RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4805
         (159 letters)



>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
           (aminotransferase) {Synechococcus sp., strain GR6
           [TaxId: 1131]}
          Length = 427

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 51  ILSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKC 110
           I+ F+G +HG     L    S  +  + +P+                 N           
Sbjct: 137 IIKFEGCYHGHADMFLVKAGSG-VATLGLPSSPGVPKKTTANTLTTPYN----------D 185

Query: 111 LAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           L  V+ L  +   +   +AG+++EPI    G       F + L++I  +
Sbjct: 186 LEAVKALFAENPGE---IAGVILEPIVGNSGFIVPDAGFLEGLREITLE 231


>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
           aminotransferase ArgD {Thermus thermophilus [TaxId:
           274]}
          Length = 387

 Score = 45.1 bits (106), Expect = 8e-07
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 26/146 (17%)

Query: 14  NIFIWYQNKQRGGASGFTKEEQESSMINQAPGAPNLSILSFKGAFHGRTLGCLSTTHSKY 73
            I     N+     SG   E  E+++            ++    F GRT+G LS T    
Sbjct: 90  AILPPELNRVFPVNSGT--EANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPK 147

Query: 74  IHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVV 133
             +  +P  +      P    P  + E   +A DE+                   A +++
Sbjct: 148 YREPFLPLVE------PVEFIPYNDVEALKRAVDEE------------------TAAVIL 183

Query: 134 EPIQSEGGDNHGSNYFFQQLQKIGKK 159
           EP+Q EGG    +  F +  ++I ++
Sbjct: 184 EPVQGEGGVRPATPEFLRAAREITQE 209


>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 404

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 5/70 (7%)

Query: 90  PKYKYPLEENERENKAEDEKCLAEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYF 149
           P                    L  +E  +   N     VA  +VEPIQ E G       +
Sbjct: 156 PTSYDGFGPFMPGFDIIPYNDLPALERALQDPN-----VAAFMVEPIQGEAGVVVPDPGY 210

Query: 150 FQQLQKIGKK 159
              ++++  +
Sbjct: 211 LMGVRELCTR 220


>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
           yoelii yoelii [TaxId: 73239]}
          Length = 404

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 128 VAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
           V   +VEPIQ E G    S+ + Q +  I KK
Sbjct: 187 VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKK 218


>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Escherichia coli [TaxId: 562]}
          Length = 425

 Score = 33.7 bits (76), Expect = 0.007
 Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 8/108 (7%)

Query: 52  LSFKGAFHGRTLGCLSTTHSKYIHKIDIPAFDWPIASFPKYKYPLEENERENKAEDEKCL 111
           ++F GA+HGRT   L+ T     +               +  YP            E   
Sbjct: 131 IAFSGAYHGRTHYTLALTGKVNPYS---AGMGLMPGHVYRALYP-----CPLHGISEDDA 182

Query: 112 AEVEDLITKYNKKGTPVAGIVVEPIQSEGGDNHGSNYFFQQLQKIGKK 159
                 I K +     +A IV+EP+Q EGG    S  F Q+L+ +  +
Sbjct: 183 IASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDE 230


>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
           {Clostridium sticklandii [TaxId: 1511]}
          Length = 516

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 122 NKKGTPVAGIVVEPIQSEGGDNHGSNYF 149
           +    P+  IVV+ I+   G N G+  +
Sbjct: 52  DTDEVPLPNIVVDHIKENNGLNLGAAMY 79


>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 222

 Score = 24.5 bits (53), Expect = 6.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 96  LEENERENKAEDEKCLAEVEDLITKYNKKGTPV 128
           ++E + E    +E+   E+  +  KYNK   P 
Sbjct: 35  IDEVQNEIDRLNEQASEEILKVEQKYNKLRQPF 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 584,626
Number of extensions: 24501
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 9
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.3 bits)