BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4808
(156 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQ-VSYNYVDVTVPALWKKY 84
KVL+TGF PF T+NPSWEAV L + IV EQ+ V Y + V A+ KK+
Sbjct: 4 KVLLTGFDPFGGETVNPSWEAVKRL-NGAAEGPASIVSEQVPTVFYKSLAVLREAM-KKH 61
Query: 85 NPDLVIHVGVSDMADKITLECKAAELCQC 113
PD++I VG + +IT E A L +
Sbjct: 62 QPDIIICVGQAGGRMQITPERVAINLNEA 90
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQ-VSYNYVDVTVPALWKKY 84
KVL+TGF PF T+NPSWEAV L + IV EQ+ V Y + V A+ KK+
Sbjct: 4 KVLLTGFDPFGGETVNPSWEAVKRL-NGAAEGPASIVSEQVPTVFYKSLAVLREAI-KKH 61
Query: 85 NPDLVIHVGVSDMADKITLECKAAELCQC 113
PD++I VG + +IT E A L +
Sbjct: 62 QPDIIICVGQAGGRMQITPERVAINLNEA 90
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
Length = 228
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 27 VLITGFGPFKTHTINPSWEAVS-LLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
+L+T F PF INPSWEA+ L ++ NIEI QI ++ + A KY
Sbjct: 26 ILVTAFDPFGGEAINPSWEAIKPLQGSQVFGANIEIC--QIPCIFDTSLEHLYAAVDKYQ 83
Query: 86 PDLVIHVGVSDMADKITLE 104
P+LVI VG + IT+E
Sbjct: 84 PELVISVGQAGGRTNITVE 102
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
Length = 216
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 27 VLITGFGPFKTHTINPSWEAVS-LLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
+L+T F PF INPSWEA+ L ++ NIEI QI ++ + A KY
Sbjct: 5 ILVTAFDPFGGEAINPSWEAIKPLQGSQVFGANIEIC--QIPCIFDTSLEHLYAAVDKYQ 62
Query: 86 PDLVIHVGVSDMADKITLE 104
P+LVI VG + IT+E
Sbjct: 63 PELVISVGQAGGRTNITVE 81
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
+L+TGF PF INPSWEAV+ L D I I+ K ++ S+ VD + +
Sbjct: 5 HILVTGFAPFDNQNINPSWEAVTQLEDIIGTHTID--KLKLPTSFKKVDNIINKTLASNH 62
Query: 86 PDLVIHVGVSDMADKITLE 104
D+V+ +G + + IT E
Sbjct: 63 YDVVLAIGQAGGRNAITPE 81
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
K+L+TGF PF NP+ + V L +RIP E+V E + VS+ + +
Sbjct: 1 MKILLTGFEPFGGDDKNPTMDIVEALSERIP----EVVGEILPVSFKRAREKLLKVLDDV 56
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ I++G++ I++E
Sbjct: 57 RPDITINLGLAPGRTHISVE 76
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
pdb|3LAC|B Chain B, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
Length = 215
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
VL+TGF PF +INP+WE L ++ +I+ +Q+ ++ + ++ P
Sbjct: 4 VLLTGFDPFGGESINPAWEVAKSLHEKTIG-EYKIISKQVPTVFHKSISVLKEYIEELAP 62
Query: 87 DLVIHVGVSDMADKITLE 104
+ +I +G + IT+E
Sbjct: 63 EFIICIGQAGGRPDITIE 80
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|B Chain B, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|C Chain C, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|D Chain D, Crystal Structure Of Pf-Pcp(1-204)-C
Length = 213
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|B Chain B, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|C Chain C, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|D Chain D, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
Length = 208
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKY 84
KVL+TGF PF INP+ L D I + ++ + V + + ++
Sbjct: 1 MKVLVTGFEPFGGEKINPTERIAKDL-DGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEI 59
Query: 85 NPDLVIHVGVSDMADKITLE 104
PD+ IHVG++ I++E
Sbjct: 60 KPDIAIHVGLAPGRSAISIE 79
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
KVLITGF PF + NP+ E ++ DR N + + VS + + ++
Sbjct: 3 KVLITGFEPFGGDSKNPT-EQIAKYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIK 61
Query: 86 PDLVIHVGVSDMADKITLE 104
P++VI++G++ IT+E
Sbjct: 62 PEIVINLGLAPTYSNITVE 80
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
pdb|2EBJ|B Chain B, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
Length = 192
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP 86
+L+TGF PF + NPS + LLP + + K + V + + L ++ P
Sbjct: 2 ILVTGFEPFGSLEHNPSQALLDLLPSEVDGKPLR--KAVLPVDAEALGEALEDLHRE-GP 58
Query: 87 DLVIHVGVSDMADKITLECKAAELC 111
V+H+G+++ +TLE A L
Sbjct: 59 KAVLHLGLAEDRPVLTLERLAVNLL 83
>pdb|1RYP|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|2 Chain 2, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|M Chain M, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|1 Chain 1, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|M Chain M, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|T Chain T, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|N Chain N, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|BB Chain b, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|M Chain M, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|1 Chain 1, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|M Chain M, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|1 Chain 1, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|M Chain M, Proteasome Inhibition By Fellutamide B
pdb|3D29|1 Chain 1, Proteasome Inhibition By Fellutamide B
pdb|3E47|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|M Chain M, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|1 Chain 1, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|N Chain N, Proteasome Activator Complex
pdb|1VSY|2 Chain 2, Proteasome Activator Complex
pdb|3L5Q|R Chain R, Proteasome Activator Complex
pdb|3L5Q|4 Chain 4, Proteasome Activator Complex
pdb|3MG4|M Chain M, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|1 Chain 1, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|M Chain M, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|1 Chain 1, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|M Chain M, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|1 Chain 1, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|M Chain M, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|1 Chain 1, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|M Chain M, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|1 Chain 1, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|M Chain M, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|AA Chain a, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|M Chain M, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|AA Chain a, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|N Chain N, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|M Chain M, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|AA Chain a, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|M Chain M, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|AA Chain a, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|M Chain M, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|AA Chain a, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 233
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 17 NALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQI 66
N L VT S L TGFG H NP V IP T +++ +E I
Sbjct: 131 NLLGVTYSSPTLATGFG---AHMANPLLRKVVDRESDIPKTTVQVAEEAI 177
>pdb|1G0U|M Chain M, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|1 Chain 1, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|M Chain M, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|0 Chain 0, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|M Chain M, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|0 Chain 0, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|M Chain M, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|1 Chain 1, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|M Chain M, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|M Chain M, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|1 Chain 1, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|7 Chain 7, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 266
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 17 NALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQI 66
N L VT S L TGFG H NP V IP T +++ +E I
Sbjct: 164 NLLGVTYSSPTLATGFG---AHMANPLLRKVVDRESDIPKTTVQVAEEAI 210
>pdb|2OT9|A Chain A, Crystal Structure Of Yaeq Protein From Pseudomonas
Syringae
Length = 180
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 64 EQIQVSYNYVDVTVPALWKKYNPDLVIH---VGVSDMADKITLECKAAE 109
EQ+ DV PALW+K D V+H VG D AD++T + E
Sbjct: 53 EQLAFGRGLSDVDEPALWEKSLDDRVLHWIEVGQPD-ADRLTWCSRRTE 100
>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
pdb|3T4E|B Chain B, 1.95 Angstrom Crystal Structure Of Shikimate
5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium In Complex With Nad
Length = 312
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 2 AQAVELDTDTRGETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNT 57
+ V+L T+ SNA+DVTA ++++ P + H+++P + +L +P T
Sbjct: 8 SSGVDLGTENLYFQSNAMDVTAKYELIGLMAYPIR-HSLSPEMQNKALEKAGLPYT 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,401,444
Number of Sequences: 62578
Number of extensions: 166550
Number of successful extensions: 561
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 28
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)