Query psy4808
Match_columns 156
No_of_seqs 118 out of 746
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 18:16:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01470 Peptidase_C15: Pyrogl 100.0 1.7E-43 3.7E-48 279.6 11.9 128 25-156 1-144 (202)
2 PRK13195 pyrrolidone-carboxyla 100.0 3.6E-42 7.8E-47 275.0 14.6 128 25-156 2-148 (222)
3 PRK13194 pyrrolidone-carboxyla 100.0 2.9E-42 6.2E-47 273.7 13.5 128 25-156 1-144 (208)
4 PRK13193 pyrrolidone-carboxyla 100.0 3.2E-42 6.9E-47 273.6 13.5 128 25-156 1-144 (209)
5 PRK13196 pyrrolidone-carboxyla 100.0 1E-41 2.2E-46 271.1 14.0 129 24-156 1-147 (211)
6 PRK13197 pyrrolidone-carboxyla 100.0 6.4E-41 1.4E-45 267.2 14.1 128 25-156 2-145 (215)
7 cd00501 Peptidase_C15 Pyroglut 100.0 5.6E-40 1.2E-44 257.5 14.4 128 25-156 1-144 (194)
8 TIGR00504 pyro_pdase pyrogluta 100.0 5.4E-40 1.2E-44 261.4 13.7 126 26-156 1-142 (212)
9 COG2039 Pcp Pyrrolidone-carbox 100.0 1.8E-40 4E-45 257.2 9.6 128 25-156 1-144 (207)
10 PF06162 DUF976: Caenorhabditi 99.8 1.2E-20 2.6E-25 143.2 9.9 120 24-147 23-166 (166)
11 KOG4755|consensus 99.7 7.9E-16 1.7E-20 121.8 10.3 133 19-155 14-169 (213)
12 PLN02778 3,5-epimerase/4-reduc 85.4 1.8 4E-05 35.5 5.1 62 22-96 7-68 (298)
13 PRK09987 dTDP-4-dehydrorhamnos 79.9 2.5 5.4E-05 34.6 3.8 61 25-95 1-64 (299)
14 PLN02572 UDP-sulfoquinovose sy 79.8 4.6 0.0001 35.3 5.7 20 75-94 126-145 (442)
15 PF04321 RmlD_sub_bind: RmlD s 76.0 4.8 0.00011 32.9 4.5 60 25-95 1-61 (286)
16 PLN02260 probable rhamnose bio 70.8 5.1 0.00011 36.7 3.7 61 23-96 379-439 (668)
17 PF06753 Bradykinin: Bradykini 68.6 1.7 3.7E-05 21.3 0.1 8 30-37 6-13 (19)
18 PRK09417 mogA molybdenum cofac 58.8 32 0.00069 27.1 5.7 81 24-105 5-87 (193)
19 PLN02653 GDP-mannose 4,6-dehyd 58.7 32 0.00069 28.3 6.0 20 76-95 74-93 (340)
20 KOG3243|consensus 53.3 17 0.00036 27.4 3.1 78 61-141 53-136 (158)
21 COG1086 Predicted nucleoside-d 52.2 23 0.0005 32.6 4.3 21 75-95 315-335 (588)
22 PF08660 Alg14: Oligosaccharid 51.1 23 0.00051 27.1 3.7 28 82-109 89-133 (170)
23 cd00758 MoCF_BD MoCF_BD: molyb 50.8 37 0.00081 24.4 4.6 65 26-96 3-69 (133)
24 TIGR01704 MTA/SAH-Nsdase 5'-me 50.3 36 0.00078 26.9 4.8 26 74-99 55-80 (228)
25 PF00994 MoCF_biosynth: Probab 50.3 20 0.00044 26.1 3.2 65 27-96 2-67 (144)
26 TIGR01472 gmd GDP-mannose 4,6- 49.4 39 0.00084 27.8 5.1 20 76-95 69-88 (343)
27 TIGR00875 fsa_talC_mipB fructo 48.4 28 0.00061 27.8 3.9 56 31-90 18-82 (213)
28 TIGR03821 AblA_like_1 lysine-2 48.1 99 0.0021 26.0 7.4 68 24-95 143-213 (321)
29 PRK14697 bifunctional 5'-methy 46.8 24 0.00051 28.2 3.3 27 73-99 56-82 (233)
30 PRK10217 dTDP-glucose 4,6-dehy 46.3 45 0.00098 27.4 5.0 20 75-94 64-83 (355)
31 PRK06714 S-adenosylhomocystein 45.8 23 0.00049 28.5 3.0 25 75-99 58-82 (236)
32 cd00886 MogA_MoaB MogA_MoaB fa 45.8 90 0.0019 23.0 6.1 68 26-97 4-73 (152)
33 PRK09620 hypothetical protein; 45.5 23 0.0005 28.4 3.0 29 75-106 77-105 (229)
34 PRK10528 multifunctional acyl- 45.5 35 0.00076 25.9 3.9 36 74-109 60-96 (191)
35 cd03522 MoeA_like MoeA_like. T 44.5 45 0.00097 28.2 4.7 70 24-97 161-231 (312)
36 PF13983 YsaB: YsaB-like lipop 43.4 13 0.00029 24.8 1.1 16 23-38 33-48 (77)
37 COG3473 Maleate cis-trans isom 43.4 69 0.0015 26.1 5.3 107 40-154 103-218 (238)
38 cd07399 MPP_YvnB Bacillus subt 41.6 14 0.0003 29.0 1.1 27 69-95 19-45 (214)
39 PRK12656 fructose-6-phosphate 40.9 44 0.00095 26.9 4.0 62 32-93 19-89 (222)
40 cd04502 SGNH_hydrolase_like_7 39.9 37 0.00081 24.8 3.2 33 77-109 42-75 (171)
41 PF00885 DMRL_synthase: 6,7-di 38.6 46 0.001 24.9 3.5 40 58-98 36-77 (144)
42 PF06925 MGDG_synth: Monogalac 37.9 28 0.0006 26.0 2.3 20 74-93 78-97 (169)
43 cd01822 Lysophospholipase_L1_l 37.4 48 0.001 24.0 3.5 35 75-109 54-89 (177)
44 KOG1780|consensus 37.3 14 0.0003 25.0 0.4 13 26-38 28-40 (77)
45 cd04501 SGNH_hydrolase_like_4 35.4 57 0.0012 24.0 3.7 34 76-109 50-84 (183)
46 PF02900 LigB: Catalytic LigB 35.1 1.1E+02 0.0023 24.7 5.5 72 75-148 31-119 (272)
47 PRK06455 riboflavin synthase; 34.7 1.1E+02 0.0023 23.5 5.0 75 24-108 3-77 (155)
48 PRK08236 hypothetical protein; 34.6 45 0.00097 26.4 3.1 27 73-99 39-67 (212)
49 TIGR02622 CDP_4_6_dhtase CDP-g 34.0 95 0.0021 25.6 5.1 19 76-94 66-84 (349)
50 KOG1371|consensus 33.8 99 0.0021 26.7 5.1 21 75-95 67-87 (343)
51 PRK13364 protocatechuate 4,5-d 33.7 1.4E+02 0.003 24.7 6.0 70 75-148 38-121 (278)
52 PLN02427 UDP-apiose/xylose syn 33.2 1.2E+02 0.0027 25.3 5.8 15 23-37 13-27 (386)
53 cd07378 MPP_ACP5 Homo sapiens 32.8 38 0.00083 27.0 2.5 23 72-94 19-41 (277)
54 PRK15181 Vi polysaccharide bio 32.7 96 0.0021 25.7 4.9 15 23-37 14-28 (348)
55 TIGR01369 CPSaseII_lrg carbamo 32.6 74 0.0016 31.2 4.7 68 22-90 552-634 (1050)
56 PLN02695 GDP-D-mannose-3',5'-e 32.4 1.3E+02 0.0028 25.4 5.7 38 6-53 7-44 (370)
57 PRK12419 riboflavin synthase s 31.4 72 0.0016 24.4 3.6 61 47-109 33-93 (158)
58 COG1087 GalE UDP-glucose 4-epi 30.8 44 0.00095 28.6 2.5 21 75-95 57-77 (329)
59 PF01048 PNP_UDP_1: Phosphoryl 30.5 79 0.0017 24.3 3.9 28 71-98 54-82 (234)
60 PF06918 DUF1280: Protein of u 30.2 2.1E+02 0.0045 23.1 6.3 75 29-109 80-182 (224)
61 TIGR02855 spore_yabG sporulati 29.8 54 0.0012 27.5 2.8 26 72-97 140-165 (283)
62 TIGR00114 lumazine-synth 6,7-d 29.7 81 0.0018 23.5 3.6 47 60-107 35-81 (138)
63 PRK07164 5'-methylthioadenosin 29.7 1.1E+02 0.0024 24.3 4.6 27 72-98 58-84 (218)
64 KOG1429|consensus 29.3 63 0.0014 27.7 3.2 26 23-54 26-51 (350)
65 PRK08125 bifunctional UDP-gluc 29.3 1E+02 0.0023 28.3 4.9 24 23-52 314-337 (660)
66 COG0623 FabI Enoyl-[acyl-carri 29.1 1.8E+02 0.0039 24.1 5.7 28 23-54 5-32 (259)
67 cd07391 MPP_PF1019 Pyrococcus 29.1 61 0.0013 24.2 2.9 25 72-96 28-52 (172)
68 PRK05294 carB carbamoyl phosph 28.9 1.1E+02 0.0024 30.0 5.3 71 22-93 552-638 (1066)
69 PRK06026 5'-methylthioadenosin 28.8 61 0.0013 25.9 2.9 21 77-97 47-72 (212)
70 PF05582 Peptidase_U57: YabG p 28.8 57 0.0012 27.5 2.8 27 71-97 140-166 (287)
71 PRK05819 deoD purine nucleosid 28.7 1.2E+02 0.0026 24.1 4.7 27 73-99 69-95 (235)
72 PF03167 UDG: Uracil DNA glyco 28.6 66 0.0014 22.6 2.9 27 70-96 71-97 (152)
73 cd08165 MPP_MPPE1 human MPPE1 27.7 54 0.0012 24.4 2.4 24 74-97 27-50 (156)
74 cd01828 sialate_O-acetylestera 27.6 93 0.002 22.5 3.6 35 74-109 38-73 (169)
75 PRK09453 phosphodiesterase; Pr 27.6 60 0.0013 24.4 2.7 21 74-94 16-36 (182)
76 cd01841 NnaC_like NnaC (CMP-Ne 27.3 1.1E+02 0.0025 22.1 4.1 29 81-109 47-76 (174)
77 cd01635 Glycosyltransferase_GT 27.2 1.4E+02 0.003 21.6 4.6 57 30-96 6-62 (229)
78 PRK12767 carbamoyl phosphate s 26.7 1.1E+02 0.0023 25.0 4.2 59 24-92 1-76 (326)
79 cd07384 MPP_Cdc1_like Saccharo 26.7 67 0.0015 24.3 2.8 25 73-97 33-57 (171)
80 PRK00061 ribH 6,7-dimethyl-8-r 26.7 96 0.0021 23.5 3.6 49 59-108 46-94 (154)
81 PRK06698 bifunctional 5'-methy 26.6 65 0.0014 28.2 3.0 26 74-99 57-82 (459)
82 COG4474 Uncharacterized protei 26.6 35 0.00076 26.7 1.2 63 24-88 1-72 (180)
83 PRK10675 UDP-galactose-4-epime 26.3 1.2E+02 0.0025 24.7 4.3 19 76-94 64-82 (338)
84 COG1091 RfbD dTDP-4-dehydrorha 26.2 58 0.0013 27.2 2.5 67 26-104 2-69 (281)
85 cd01833 XynB_like SGNH_hydrola 26.2 64 0.0014 23.1 2.5 14 84-97 39-53 (157)
86 PF03418 Peptidase_A25: Germin 25.8 2E+02 0.0044 24.9 5.7 71 23-94 94-178 (354)
87 cd07394 MPP_Vps29 Homo sapiens 25.7 53 0.0012 25.0 2.0 24 74-97 18-41 (178)
88 COG1992 Uncharacterized conser 25.4 99 0.0021 24.3 3.5 25 77-101 133-159 (181)
89 COG0775 Pfs Nucleoside phospho 25.3 81 0.0018 25.3 3.1 25 76-100 60-84 (234)
90 PRK13982 bifunctional SbtC-lik 25.3 97 0.0021 27.9 3.8 71 22-94 254-343 (475)
91 TIGR00024 SbcD_rel_arch putati 25.2 55 0.0012 26.1 2.1 26 69-94 42-67 (225)
92 PRK05584 5'-methylthioadenosin 25.1 1.6E+02 0.0034 23.0 4.7 25 75-99 57-81 (230)
93 PLN02404 6,7-dimethyl-8-ribity 25.0 1.1E+02 0.0024 22.9 3.6 49 60-109 42-90 (141)
94 cd07362 HPCD_like Class III ex 24.8 3.7E+02 0.0081 21.9 7.0 73 76-150 34-117 (272)
95 cd02067 B12-binding B12 bindin 24.8 1.1E+02 0.0024 21.2 3.4 55 39-96 35-90 (119)
96 PF09840 DUF2067: Uncharacteri 24.7 79 0.0017 24.9 2.8 29 122-155 84-112 (190)
97 PRK08945 putative oxoacyl-(acy 24.7 1.5E+02 0.0032 22.8 4.5 25 70-94 76-101 (247)
98 cd07383 MPP_Dcr2 Saccharomyces 24.6 71 0.0015 24.3 2.6 24 73-96 29-52 (199)
99 TIGR03664 fut_nucase futalosin 24.3 89 0.0019 24.7 3.2 25 75-99 45-69 (222)
100 KOG1431|consensus 23.5 1.3E+02 0.0029 25.0 4.0 61 24-94 1-64 (315)
101 TIGR00040 yfcE phosphoesterase 23.4 74 0.0016 23.2 2.4 22 75-96 17-39 (158)
102 cd05898 Ig5_KIRREL3 Fifth immu 23.0 23 0.0005 24.6 -0.4 13 143-156 72-84 (98)
103 PLN03069 magnesiumprotoporphyr 22.9 55 0.0012 32.9 2.0 16 82-97 600-615 (1220)
104 PF14605 Nup35_RRM_2: Nup53/35 22.9 62 0.0014 19.8 1.6 22 25-52 2-23 (53)
105 PRK12653 fructose-6-phosphate 22.8 1.1E+02 0.0024 24.5 3.4 16 31-46 18-33 (220)
106 PRK12655 fructose-6-phosphate 22.7 1.1E+02 0.0025 24.4 3.5 16 31-46 18-33 (220)
107 KOG1394|consensus 22.6 48 0.001 29.1 1.4 22 24-46 23-47 (440)
108 PF02585 PIG-L: GlcNAc-PI de-N 22.5 73 0.0016 22.3 2.1 28 69-96 84-111 (128)
109 PF00149 Metallophos: Calcineu 22.4 1.2E+02 0.0026 20.4 3.2 29 74-102 20-48 (200)
110 TIGR01705 MTA/SAH-nuc-hyp 5'-m 22.3 1E+02 0.0022 24.7 3.1 21 77-97 47-72 (212)
111 PRK12362 germination protease; 22.1 1.7E+02 0.0037 25.0 4.6 72 23-96 97-183 (318)
112 PLN02584 5'-methylthioadenosin 22.0 97 0.0021 25.1 3.0 25 75-99 79-103 (249)
113 PLN00016 RNA-binding protein; 22.0 1.3E+02 0.0027 25.3 3.8 16 78-93 123-138 (378)
114 PRK13405 bchH magnesium chelat 22.0 57 0.0012 32.7 1.9 16 82-97 593-608 (1209)
115 TIGR02025 BchH magnesium chela 21.8 59 0.0013 32.7 1.9 16 82-97 573-588 (1216)
116 PRK06849 hypothetical protein; 21.8 98 0.0021 26.2 3.1 66 23-94 3-85 (389)
117 PRK12815 carB carbamoyl phosph 21.7 1.2E+02 0.0027 29.8 4.1 65 23-91 554-636 (1068)
118 PRK07904 short chain dehydroge 21.3 3.1E+02 0.0067 21.4 5.8 35 61-95 62-98 (253)
119 PLN02240 UDP-glucose 4-epimera 21.0 2.2E+02 0.0047 23.2 5.0 19 76-94 72-90 (352)
120 COG0054 RibH Riboflavin syntha 20.8 1.4E+02 0.0031 22.7 3.5 47 61-108 48-94 (152)
121 PRK12493 magnesium chelatase s 20.8 63 0.0014 32.7 1.9 16 82-97 587-602 (1310)
122 COG1927 Mtd Coenzyme F420-depe 20.7 1.3E+02 0.0029 24.5 3.4 29 71-99 46-74 (277)
123 PRK12827 short chain dehydroge 20.7 3E+02 0.0066 20.7 5.5 21 74-94 75-96 (249)
124 COG3540 PhoD Phosphodiesterase 20.7 69 0.0015 29.1 2.0 16 80-95 163-178 (522)
125 cd06353 PBP1_BmpA_Med_like Per 20.3 3.1E+02 0.0068 21.8 5.7 58 33-94 8-66 (258)
126 PRK06194 hypothetical protein; 20.3 1.2E+02 0.0027 23.8 3.3 25 72-96 69-94 (287)
No 1
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=100.00 E-value=1.7e-43 Score=279.58 Aligned_cols=128 Identities=34% Similarity=0.536 Sum_probs=103.9
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||+++++||||++++.|++... .+++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~~-~~~~v~~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGva~~~~~i~lE 79 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGELI-GGAEVHTRELPVSYEKAFEALEELLEEHQPDLVIHLGVAGGRKSIRLE 79 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSEE-TTEEEEEEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE-TT-SSEEEE
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCcC-CCceEEEEEecCchHhHHHHHHHHHHhcCCcEEEEEeecCCcchhhHH
Confidence 7899999999999999999999999998666 789999999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| ++||++ ||..|+|+||+++|+++|+++ |+|+++|+|||+| |||.
T Consensus 80 r~A~N~~d~~~pD~~G~~p~~~~i~~~gp~~~~t~lp~~~l~~~l~~~--gip~~~S~dAG~Y-lCN~ 144 (202)
T PF01470_consen 80 RVAINWADFRIPDNDGRQPKDEPIVPDGPEAYFTTLPVRALVEALREA--GIPVEISNDAGRY-LCNY 144 (202)
T ss_dssp SEEES-BE-SS--TTS---ESB-SSTTS-SEEE-BS-HHHHHHHHHHT--T--EEEES---SS-HHHH
T ss_pred HHhhccCCCcCCcccCCccCCccccCCCccceecCCCHHHHHHHHHHc--CCCCcccCChhhh-HHHH
Confidence 99999 578887 689999999999999999999 9999999999999 9994
No 2
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=3.6e-42 Score=275.01 Aligned_cols=128 Identities=20% Similarity=0.264 Sum_probs=122.2
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||++++.|.+..+ .+++|...+|||+|+.+.+.+.+++++++||+|||+|++++++.|++|
T Consensus 2 ~~ILvTGF~PFgg~~~NPS~~~v~~L~~~~~-~~~~v~~~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~a~gr~~itlE 80 (222)
T PRK13195 2 SKVLVTGFGPYGVTPVNPAQLTAEELDGRTI-AGATVISRIVPNTFFESIAAAQQAIAEIEPALVIMLGEYPGRSMITVE 80 (222)
T ss_pred CEEEEeeecCCCCCCcCchHHHHHhcccccc-CCeEEEEEEeCeEehHHHHHHHHHHHHHCCCEEEEeCccCCcCceEeE
Confidence 5799999999999999999999999998766 688999999999999999999999999999999999999999999999
Q ss_pred eeecc----c---cCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----L---CQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~---~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
|+|+| + +||++ ||..|+|+||+++|+++|++. |+|+++|+|||+| |||+
T Consensus 81 rvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp~ay~stLpv~~iv~~l~~~--gipa~vS~~AGtY-vCN~ 148 (222)
T PRK13195 81 RLAQNVNDCGRYGLADCAGRVLVGEPTDPAGPVAYHATVPVRAMVLAMRKA--GVPADVSDAAGTF-VCNH 148 (222)
T ss_pred EEEEecccccccCCCCCCCCcCCCCcccCCCcceeecCCCHHHHHHHHHhc--CCCceEecCCCcc-eehH
Confidence 99999 2 89987 689999999999999999999 9999999999999 9995
No 3
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=2.9e-42 Score=273.69 Aligned_cols=128 Identities=24% Similarity=0.402 Sum_probs=122.0
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||++++.|++..+ .+++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~-~~~~v~~~~LPV~~~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~~i~lE 79 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGKKI-GDAKVFGRVLPVSFKRAREELEKVLDEIKPDITINLGLAPGRTHISVE 79 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhcccccc-CCcEEEEEEeCCchHhHHHHHHHHHHHhCCCEEEEeeccCCcceEEEE
Confidence 5699999999999999999999999998876 678899999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| ++||++ ||..|+|+||+++++++|++. |+|+++|+|||+| |||.
T Consensus 80 r~A~N~~~~~~pD~~G~~p~~~~i~~~gp~~y~ttlp~~~l~~~l~~~--gip~~~S~dAG~y-lCN~ 144 (208)
T PRK13194 80 RVAVNAIDARIPDNDGEKPEDEPIVEGAPAAYFATLPTREIVEELKKN--GIPAVLSYSAGTY-LCNY 144 (208)
T ss_pred EEEEcCCCCCCCCCCCCCCCCCcccCCCCCcccCCCCHHHHHHHHHhc--CCCcEEeCCCccc-hhHH
Confidence 99999 679987 588999999999999999999 9999999999999 9994
No 4
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=3.2e-42 Score=273.61 Aligned_cols=128 Identities=27% Similarity=0.314 Sum_probs=121.7
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||+++++|++... .+.+|+..+|||+|+.+.+.+.+++++++||+|||+|++++++.|+||
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~-~~~~v~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~~i~lE 79 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNGSTI-LKEEVKGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAPGRAKITPE 79 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhcccc-CCceEEEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccCCcCceEEE
Confidence 4699999999999999999999999998766 678899999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| ++||++ ||..|+|+||+++|+++|++. |+|+++|+|||+| |||+
T Consensus 80 r~AiN~~d~~~pDn~G~~p~~~~I~~~gp~~~~t~lp~~~l~~~l~~~--Gip~~~S~~AG~y-vCN~ 144 (209)
T PRK13193 80 KIAINYKYSREGDNAGKKYKGEKIDPLGQDGIFTNIPVEDLVDLLNEN--GIPAELSLSAGSY-LCNN 144 (209)
T ss_pred EEEEccCcCcCCccCCCCcCCCcccCCCcceeecCCCHHHHHHHHHhc--CCCceEecCCccc-hhHH
Confidence 99999 679977 688999999999999999999 9999999999999 9994
No 5
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1e-41 Score=271.09 Aligned_cols=129 Identities=21% Similarity=0.306 Sum_probs=122.8
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL 103 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l 103 (156)
+|+|||||||||++++.||||+++++|++... .+++|+..+|||+|+.+.+.++++|++++||+|||+|++++++.|+|
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~-~~~~v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~~i~l 79 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQA-GALRVHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAAGRPQVTL 79 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhcccccC-CCcEEEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccCCcCcEEE
Confidence 47899999999999999999999999999876 67889999999999999999999999999999999999999999999
Q ss_pred eeeecc----ccCCCC--------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 104 ECKAAE----LCQCTD--------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 104 E~~A~N----~~Pd~~--------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
|++|+| ++||++ ||+.|+|+||+++|++++++. |+|+++|+|||+| |||+
T Consensus 80 Er~A~N~~d~~~pDn~G~~~~~~~i~~~~~gp~~y~stLpv~~l~~~l~~~--gip~~iS~~AG~Y-lCN~ 147 (211)
T PRK13196 80 ERVAVNVMDFSIPDNAGQTYRDTPVCTEPDAPAAYLSTLPLRAILAAWHDA--GIPGHISNTAGLY-VCNF 147 (211)
T ss_pred EEEEeccccCCCCCCCCCCCCCCCcccCCCCccceecCCCHHHHHHHHHhc--CCCceEccCCCce-eehH
Confidence 999999 578877 588999999999999999999 9999999999999 9994
No 6
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=6.4e-41 Score=267.22 Aligned_cols=128 Identities=29% Similarity=0.451 Sum_probs=122.2
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||+++++|++... .+++|++.+|||+|+.+.+.+.+++++++||+|||+|++++++.|+||
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~-~~~~i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~~~~~i~lE 80 (215)
T PRK13197 2 MKILVTGFDPFGGEKINPSWEAVKQLPGKEI-GGAEIIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAGGRTDITPE 80 (215)
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHcccccc-CCcEEEEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCCCCCcEEeE
Confidence 6799999999999999999999999998877 789999999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| ++||++ ||+.|+|+||+++|++++++. |+|+++|+|||+| |||+
T Consensus 81 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~Lp~~~l~~~l~~~--gip~~~S~dAG~Y-lCN~ 145 (215)
T PRK13197 81 RVAINIDDARIPDNEGNQPIDEPIVEDGPAAYFSTLPIKAMVKAIREA--GIPASVSNTAGTF-VCNH 145 (215)
T ss_pred eeecccCCccCCCCCCCCcCCCcccCCCCceeEcCCCHHHHHHHHHHc--CCCceeccCCCce-eehH
Confidence 99999 568887 689999999999999999999 9999999999999 9994
No 7
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=100.00 E-value=5.6e-40 Score=257.47 Aligned_cols=128 Identities=34% Similarity=0.532 Sum_probs=121.7
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||+++++|++... .+++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~-~~~~i~~~~lpv~y~~~~~~~~~~~~~~~pd~vlhlG~~~~~~~i~lE 79 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLIL-GGAEVVGLELPVVFQKAVEVLPELIEEHKPDLVIHVGLAGGRSTITIE 79 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhcccccc-CCcEEEEEEcCccHHHHHHHHHHHHHHhCCCEEEEecccCCCCceeEE
Confidence 5799999999999999999999999999876 789999999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| +.||++ ||..|+|++|++++++++++. |+++++|+|||+| |||.
T Consensus 80 ~~A~n~~~~~~pD~~G~~p~~~~i~~~g~~~~~t~lp~~~l~~~l~~~--g~~~~~S~dAG~Y-lCn~ 144 (194)
T cd00501 80 RVAINIDDARIPDNEGNQPIDEPIVPGGPAAYFSTLPVKAIVKALREA--GIPARVSNDAGTY-LCNH 144 (194)
T ss_pred eEEEccCCCCCCCCCCCcCCCCcccCCCCCeeeecCCHHHHHHHHHhc--CCCceEcCCCCce-eeHH
Confidence 99999 468876 588999999999999999999 9999999999999 9994
No 8
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=100.00 E-value=5.4e-40 Score=261.40 Aligned_cols=126 Identities=27% Similarity=0.391 Sum_probs=119.9
Q ss_pred EEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEee
Q psy4808 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLEC 105 (156)
Q Consensus 26 ~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~ 105 (156)
+|||||||||++++.||||++++.|++..+ +++|+..+|||+|+.+.+.+.++|++++||+|||+|++++++.|+||+
T Consensus 1 ~ILvTGF~PF~~~~~NPS~~~v~~L~~~~~--g~~i~~~~lPV~~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~~i~lEr 78 (212)
T TIGR00504 1 KVLLTGFEPFGVDPVNPSWEAAEELDGRTI--GATVVAEILPNTFFEAIEALQQAIDEIEPDIVIMLGLAPGRSMITVER 78 (212)
T ss_pred CEEEEeccCCCCCCCCcHHHHHHhcccCcC--CcEEEEEEeCCChHHHHHHHHHHHHHHCCCEEEEeccCCCcCceeeEE
Confidence 499999999999999999999999998865 588999999999999999999999999999999999999999999999
Q ss_pred eecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 106 KAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 106 ~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
+|+| ++||++ ||..|+|+||+++|++++++. |+++++|+|||+| |||+
T Consensus 79 ~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttLpv~~l~~~l~~~--gip~~~S~dAG~y-lCN~ 142 (212)
T TIGR00504 79 VAINVNDARIPDNAGEQPIDEPIVPDGPAAYFATLPVRAMVLAMKKA--GIPADVSYTAGTF-VCNH 142 (212)
T ss_pred eEeccCcCCCCCCCCCccCCCcccCCCCceeecCCCHHHHHHHHHHc--CCCeeEeCCCCce-eeHH
Confidence 9999 579987 688999999999999999999 9999999999999 9994
No 9
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=257.24 Aligned_cols=128 Identities=30% Similarity=0.406 Sum_probs=124.2
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
++||||||+||++++.||||+++++|++..+ .+.+|...+|||+|.++.+.+.+.+++.+||+||++|+++++..|++|
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~~i-~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~iT~E 79 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNGRII-GGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIGQAGGRTKITPE 79 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCcccc-cCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEecccCCCCcCChh
Confidence 4799999999999999999999999999988 789999999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
|+|.| ++|||+ ||..|+|+||+++|+.+++++ |+|..+|+.||+| |||+
T Consensus 80 RVAINv~DarIpDN~G~qpiDepI~~dGpaAYfstlPvkamv~~~~~~--GiPA~vS~sAGTy-vCNh 144 (207)
T COG2039 80 RVAINVDDARIPDNAGNQPIDEPIDPDGPAAYFSTLPVKAMVQAIREA--GIPASVSNSAGTY-VCNH 144 (207)
T ss_pred heeeccccccCCCCCCCCcCCCccCCCCchhhhhcCcHHHHHHHHHHc--CCChhhhcccchh-hhHH
Confidence 99999 889998 789999999999999999999 9999999999999 9995
No 10
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=99.84 E-value=1.2e-20 Score=143.19 Aligned_cols=120 Identities=32% Similarity=0.458 Sum_probs=97.5
Q ss_pred ceEEEEEeec-CCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeee
Q psy4808 24 SFKVLITGFG-PFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKIT 102 (156)
Q Consensus 24 ~~~VliTGFg-pF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~ 102 (156)
.+.++||||+ ||.+...||+-.+.++|.+.. .. .+....+|++|+.|.+.++++|+. +||++||||.|+..+.|+
T Consensus 23 ~~~~vvTgF~~~fe~~nps~~viv~DEL~k~~--~~-~~l~~K~~~sYe~V~ekvpel~~~-~~~~viHL~~Hs~kNtI~ 98 (166)
T PF06162_consen 23 KKKVVVTGFDGPFEGENPSSAVIVLDELEKEG--ED-KILFFKMEVSYEEVDEKVPELWKE-QPDFVIHLASHSVKNTIY 98 (166)
T ss_pred ecceeEEecCCCccCCCCCcceeeHHHhhcCC--cc-ceeeeeccchHHHHHHHhHHHHhh-CCCeEEEecCCCCcceEE
Confidence 3568899996 997754444444459999875 23 334449999999999999999987 699999999999999999
Q ss_pred Eeeeecc----------ccCCCC------CCceEEecCCHHHHHHHHHhhc-------CCCceEEcCC
Q psy4808 103 LECKAAE----------LCQCTD------SIDVIKTALDVESLVKEFQTNK-------ANINQVLDID 147 (156)
Q Consensus 103 lE~~A~N----------~~Pd~~------gp~~~~T~l~~~~l~~~l~~~~-------~g~~v~~S~d 147 (156)
+|+.|+- ..|.++ ....++|.+|++.|++++++.+ +|+.|+.|+|
T Consensus 99 ieq~AFsdGY~~~D~nG~vPegnkv~~~~~e~~lkt~vdce~Lvkev~E~cglDg~KyGgL~Veksed 166 (166)
T PF06162_consen 99 IEQKAFSDGYCQPDKNGCVPEGNKVKCESEETVLKTFVDCEELVKEVNEKCGLDGEKYGGLKVEKSED 166 (166)
T ss_pred EEehhhcCCCcCCCCCCcCCCCCeeccCccccccccccCHHHHHHHHHHHhcccccccCcEEEEecCC
Confidence 9999997 234443 2468999999999999999997 6889999986
No 11
>KOG4755|consensus
Probab=99.65 E-value=7.9e-16 Score=121.84 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=107.5
Q ss_pred CCCCCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCC
Q psy4808 19 LDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMA 98 (156)
Q Consensus 19 ~~~~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~ 98 (156)
....+.++|+.+.++||.+...||++.++++|.+... ....+.. .+--+|+.+.+.+.++|+++. +..||+|.|+..
T Consensus 14 ~~i~~~rkvv~v~~~p~~g~~~~~aviv~dEl~k~~~-~s~~l~~-~~~~sy~~v~~~i~e~~~~~~-~~aIhl~sh~~k 90 (213)
T KOG4755|consen 14 IPITGFRKVVTVFDFPFFGKQPSPAVIVLDELVKKGG-VSKYLCF-KMCTSYETVDEIILELWEEHL-QSAIHLGSHSQK 90 (213)
T ss_pred eecCcceEEEEeccCCccCccCCchhhhHHHHHHcCC-ceeccee-cceechhhHhHHHHHhhccce-eEEEEecccccC
Confidence 4445566787777778766444999999999998763 1112222 233399999999999999977 999999999999
Q ss_pred CeeeEeeeecc----------ccCCCC-----CC-ceEEecCCHHHHHHHHHhhc-------CCCceEEcCCCCcccccC
Q psy4808 99 DKITLECKAAE----------LCQCTD-----SI-DVIKTALDVESLVKEFQTNK-------ANINQVLDIDISRVDVCN 155 (156)
Q Consensus 99 ~~i~lE~~A~N----------~~Pd~~-----gp-~~~~T~l~~~~l~~~l~~~~-------~g~~v~~S~dAG~yllCN 155 (156)
+.|.+|+.|++ .+|..+ || ...+|.+++..+++...+.+ +|++|++|.||||| |||
T Consensus 91 nti~i~~~af~~gy~~~d~~g~vp~~nkv~~~~~d~~~~s~i~c~~vv~~v~e~~~~~~~~~~gl~V~~s~dagR~-lc~ 169 (213)
T KOG4755|consen 91 NTIQIEQSAFSSGYTQKDKCGKVPEGNKVKCDGPDTGGRSCINCEIVVKDVNERCASDGQKFGGLEVEISEDAGRY-LCG 169 (213)
T ss_pred cEEEEEEecccCCccchhhcccccCCceeEeccccccccccccHHHHHHhhhhhhhhccccCCceEEEEcCcccce-ech
Confidence 99999999997 556666 56 56789999999999998876 57999999999999 998
No 12
>PLN02778 3,5-epimerase/4-reductase
Probab=85.39 E-value=1.8 Score=35.53 Aligned_cols=62 Identities=16% Similarity=0.079 Sum_probs=38.4
Q ss_pred CCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 22 TASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
.++|+|||||=.-|-| ..+++.|.... .++... ...... .+.+...++..+||+|||+.-..
T Consensus 7 ~~~~kiLVtG~tGfiG------~~l~~~L~~~g----~~V~~~--~~~~~~-~~~v~~~l~~~~~D~ViH~Aa~~ 68 (298)
T PLN02778 7 SATLKFLIYGKTGWIG------GLLGKLCQEQG----IDFHYG--SGRLEN-RASLEADIDAVKPTHVFNAAGVT 68 (298)
T ss_pred CCCCeEEEECCCCHHH------HHHHHHHHhCC----CEEEEe--cCccCC-HHHHHHHHHhcCCCEEEECCccc
Confidence 3568999999999966 45777776543 233211 111111 13455566667899999998533
No 13
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=79.94 E-value=2.5 Score=34.57 Aligned_cols=61 Identities=16% Similarity=0.235 Sum_probs=35.7
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE---EeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE---QIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~---~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
|+|||||=.-|=| ..+++.|.+.. .+..... .+..+... .+.+.++++..+||+|||+.-.
T Consensus 1 m~iLVtG~~GfiG------s~l~~~L~~~g---~V~~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVG------WELQRALAPLG---NLIALDVHSTDYCGDFSN-PEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHH------HHHHHHhhccC---CEEEeccccccccCCCCC-HHHHHHHHHhcCCCEEEECCcc
Confidence 4799999878855 45677775432 2211111 01112222 1356677777789999999754
No 14
>PLN02572 UDP-sulfoquinovose synthase
Probab=79.79 E-value=4.6 Score=35.32 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=15.2
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.++++.++||+|||++.
T Consensus 126 ~~v~~~l~~~~~D~ViHlAa 145 (442)
T PLN02572 126 EFLSEAFKSFEPDAVVHFGE 145 (442)
T ss_pred HHHHHHHHhCCCCEEEECCC
Confidence 34566667778999999984
No 15
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=75.95 E-value=4.8 Score=32.91 Aligned_cols=60 Identities=23% Similarity=0.375 Sum_probs=32.6
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE-EeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE-QIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~-~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
|+|||||=.-|-| +.+++.|.... +++... .=+++... .+.+.+++++.+||+|||++-.
T Consensus 1 MriLI~GasG~lG------~~l~~~l~~~~----~~v~~~~r~~~dl~d-~~~~~~~~~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLG------SALARALKERG----YEVIATSRSDLDLTD-PEAVAKLLEAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHH------HHHHHHHTTTS----EEEEEESTTCS-TTS-HHHHHHHHHHH--SEEEE----
T ss_pred CEEEEECCCCHHH------HHHHHHHhhCC----CEEEEeCchhcCCCC-HHHHHHHHHHhCCCeEecccee
Confidence 6899999755533 46777777633 332221 00233322 2566778888899999999753
No 16
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=70.80 E-value=5.1 Score=36.65 Aligned_cols=61 Identities=16% Similarity=0.030 Sum_probs=37.7
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
+.|+|||||=.-|-| ..+++.|.... +++.... ..... .+.+.+.+.+++||+|||++-..
T Consensus 379 ~~mkiLVtGa~G~iG------~~l~~~L~~~g----~~v~~~~--~~l~d-~~~v~~~i~~~~pd~Vih~Aa~~ 439 (668)
T PLN02260 379 PSLKFLIYGRTGWIG------GLLGKLCEKQG----IAYEYGK--GRLED-RSSLLADIRNVKPTHVFNAAGVT 439 (668)
T ss_pred CCceEEEECCCchHH------HHHHHHHHhCC----CeEEeec--ccccc-HHHHHHHHHhhCCCEEEECCccc
Confidence 356899999988866 35777776543 2221110 01111 13456677778999999999644
No 17
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=68.62 E-value=1.7 Score=21.31 Aligned_cols=8 Identities=50% Similarity=1.198 Sum_probs=6.9
Q ss_pred EeecCCCC
Q psy4808 30 TGFGPFKT 37 (156)
Q Consensus 30 TGFgpF~~ 37 (156)
+||.||.+
T Consensus 6 ~gftpfrg 13 (19)
T PF06753_consen 6 PGFTPFRG 13 (19)
T ss_pred CCCCcccc
Confidence 69999976
No 18
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=58.76 E-value=32 Score=27.06 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=53.1
Q ss_pred ceEEEEEeecCCCCCCCCchHHH-HHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCC-Cee
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEA-VSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMA-DKI 101 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~v-v~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~-~~i 101 (156)
+.-|+.+|=.-+.+...|.+..+ ...|..... ..+.+....+|=+.+...+.+.+++++.+.|+||..|=.+-. +-+
T Consensus 5 ~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~-~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rDv 83 (193)
T PRK09417 5 KIGLVSISDRASSGVYEDKGIPALEEWLASALT-SPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRDV 83 (193)
T ss_pred EEEEEEEcCcCCCCceeechHHHHHHHHHHcCC-CCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCCc
Confidence 34577788777888777887754 444544432 234454567887788888888877765578999999876533 235
Q ss_pred eEee
Q psy4808 102 TLEC 105 (156)
Q Consensus 102 ~lE~ 105 (156)
+.|.
T Consensus 84 TpeA 87 (193)
T PRK09417 84 TPEA 87 (193)
T ss_pred HHHH
Confidence 4443
No 19
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=58.73 E-value=32 Score=28.27 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=14.8
Q ss_pred HHHHHHHHhCCCEEEEEccc
Q psy4808 76 TVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv~ 95 (156)
.+.++++..+||+|||++-.
T Consensus 74 ~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 74 SLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred HHHHHHHHcCCCEEEECCcc
Confidence 34556666689999999753
No 20
>KOG3243|consensus
Probab=53.31 E-value=17 Score=27.37 Aligned_cols=78 Identities=21% Similarity=0.161 Sum_probs=49.8
Q ss_pred EEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeecc------ccCCCCCCceEEecCCHHHHHHHHH
Q psy4808 61 IVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE------LCQCTDSIDVIKTALDVESLVKEFQ 134 (156)
Q Consensus 61 i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~N------~~Pd~~gp~~~~T~l~~~~l~~~l~ 134 (156)
|..+.+|=||+-- .-...+.++...|+||++|+--.-...-+|-++-. +...+.|-+.++--|-|...-++|.
T Consensus 53 I~ie~VPGS~Elp-~g~~~~~~r~~~daVi~IGvlIkGsTmHfeyis~s~~hglm~~~~~sgvPvIfGlLTc~~eeQAL~ 131 (158)
T KOG3243|consen 53 IEIEWVPGSFELP-VGAQNLGKRGKFDAVICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVPVIFGLLTCEDEEQALN 131 (158)
T ss_pred eeEEEcCCceecc-HHHHhhhhccCceEEEEEEEEEecCchhHHHHHHHHHHHHhhhcccCCCCEEEEEeeeccHHHHHH
Confidence 5566788888743 33456667778999999999766666777766544 3333335556665555555556666
Q ss_pred hhcCCCc
Q psy4808 135 TNKANIN 141 (156)
Q Consensus 135 ~~~~g~~ 141 (156)
+. |++
T Consensus 132 Ra--G~~ 136 (158)
T KOG3243|consen 132 RA--GGK 136 (158)
T ss_pred hh--ccc
Confidence 66 554
No 21
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=52.19 E-value=23 Score=32.59 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.4
Q ss_pred hHHHHHHHHhCCCEEEEEccc
Q psy4808 75 VTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~ 95 (156)
+.+.++.+.++||+|.|-.-+
T Consensus 315 ~~~~~~~~~~kvd~VfHAAA~ 335 (588)
T COG1086 315 DRVERAMEGHKVDIVFHAAAL 335 (588)
T ss_pred HHHHHHHhcCCCceEEEhhhh
Confidence 567788889999999998763
No 22
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=51.14 E-value=23 Score=27.06 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHhCCCEEEEEcccC-----------------CCCeeeEeeeecc
Q psy4808 82 KKYNPDLVIHVGVSD-----------------MADKITLECKAAE 109 (156)
Q Consensus 82 ~~~~pd~vih~Gv~~-----------------~~~~i~lE~~A~N 109 (156)
.+.+||+||.-|-.. +.+.|.+|..|+=
T Consensus 89 ~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~aRv 133 (170)
T PF08660_consen 89 RRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFARV 133 (170)
T ss_pred HHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeeeec
Confidence 455999999988754 6888999999985
No 23
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=50.80 E-value=37 Score=24.44 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=42.5
Q ss_pred EEEEEeecCCCCCCCCchHHHHHh-CCCCCCCCCcEEEE-EEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 26 KVLITGFGPFKTHTINPSWEAVSL-LPDRIPNTNIEIVK-EQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 26 ~VliTGFgpF~~~~~NpS~~vv~~-L~~~~~~~~~~i~~-~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
-|+.||=+=..+...|.+...+.. |.+. +.++.. ..+|=+.+...+.+.+++++ .|+||..|=.+
T Consensus 3 ~ii~~G~El~~g~i~d~n~~~l~~~l~~~----G~~v~~~~~v~Dd~~~i~~~i~~~~~~--~DlvittGG~g 69 (133)
T cd00758 3 AIVTVSDELSQGQIEDTNGPALEALLEDL----GCEVIYAGVVPDDADSIRAALIEASRE--ADLVLTTGGTG 69 (133)
T ss_pred EEEEeCccccCCceEEchHHHHHHHHHHC----CCEEEEeeecCCCHHHHHHHHHHHHhc--CCEEEECCCCC
Confidence 477888776666655666655444 4443 344433 36677777777888777765 79999997654
No 24
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=50.30 E-value=36 Score=26.87 Aligned_cols=26 Identities=19% Similarity=0.373 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 74 DVTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
.-.+..++++++|++||.+|.+++-+
T Consensus 55 A~~~~~li~~~~p~~II~~G~aG~l~ 80 (228)
T TIGR01704 55 ALGATLLLEHCKPDVIINTGSAGGLA 80 (228)
T ss_pred HHHHHHHHHhCCCCEEEEEeeccCCC
Confidence 44456678889999999999998754
No 25
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=50.26 E-value=20 Score=26.06 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 27 VLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 27 VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
|+.||=+=+.+...|.+...+.++-.. .++++ ....+|=+.+...+.+.+.+++. |+||..|=-+
T Consensus 2 Ii~~GdEl~~g~~~d~n~~~l~~~l~~---~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~--D~VittGG~g 67 (144)
T PF00994_consen 2 IISTGDELLSGQIRDSNGPFLAALLEE---LGIEVIRYGIVPDDPDAIKEALRRALDRA--DLVITTGGTG 67 (144)
T ss_dssp EEEECHHHHTTSSEBHHHHHHHHHHHH---TTEEEEEEEEEESSHHHHHHHHHHHHHTT--SEEEEESSSS
T ss_pred EEEECccCcCCceEEhHHHHHHHHHHH---cCCeeeEEEEECCCHHHHHHHHHhhhccC--CEEEEcCCcC
Confidence 677777777776666666655555443 24555 45688888888888887776654 9999998654
No 26
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=49.35 E-value=39 Score=27.82 Aligned_cols=20 Identities=5% Similarity=0.245 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCEEEEEccc
Q psy4808 76 TVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv~ 95 (156)
.+.++++..+||+|+|+.-.
T Consensus 69 ~l~~~~~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 69 NLRRIIDEIKPTEIYNLAAQ 88 (343)
T ss_pred HHHHHHHhCCCCEEEECCcc
Confidence 45666677789999999864
No 27
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=48.44 E-value=28 Score=27.76 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=30.7
Q ss_pred eecCCCCCCCCchHH---------HHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEE
Q psy4808 31 GFGPFKTHTINPSWE---------AVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVI 90 (156)
Q Consensus 31 GFgpF~~~~~NpS~~---------vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vi 90 (156)
.+++|.|++.|||-. +++.+.+... + .|...++..++++..+.-.++++. .|.++|
T Consensus 18 ~~~~i~GvTTNPsll~k~g~~~~~~~~~i~~~~~-g--~vs~qv~~~~~~~mi~~a~~l~~~-~~~i~i 82 (213)
T TIGR00875 18 ELGILAGVTTNPSLIAKEGRSFWEVLKEIQEAVE-G--PVSAETISLDAEGMVEEAKELAKL-APNIVV 82 (213)
T ss_pred hcCCcceEeCCHHHHHhcCCCHHHHHHHHHHhcC-C--cEEEEEeeCCHHHHHHHHHHHHHh-CCCeEE
Confidence 478899999999943 3333332221 1 244444555555555555554443 455555
No 28
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=48.11 E-value=99 Score=26.00 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=37.5
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEE---EEeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVK---EQIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~---~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
...|++||=+||-. ..+-=+++++.|.....-..++|++ ..+| ..+.+.+-+.+++++...++.+...
T Consensus 143 i~~VvltGGEPL~~-~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p---~rit~el~~~L~~~~~~~~~~~h~d 213 (321)
T TIGR03821 143 INEVILSGGDPLMA-KDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIP---DRITSGLCDLLANSRLQTVLVVHIN 213 (321)
T ss_pred CCEEEEeCcccccC-CchHHHHHHHHHHhCCCCcEEEEecCcceeeH---HHhhHHHHHHHHhcCCcEEEEeeCC
Confidence 45799999889853 2222335555555432213455655 2333 2455566666777776666544443
No 29
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=46.83 E-value=24 Score=28.19 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 73 VDVTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 73 v~~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
+.-....++++++||.||++|.+++-+
T Consensus 56 AA~~~~~li~~f~~~~II~~G~AG~l~ 82 (233)
T PRK14697 56 AAACTQTLIHKFDVDAIINTGVAGGLH 82 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEEecccCCC
Confidence 345567778889999999999998764
No 30
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=46.27 E-value=45 Score=27.42 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=14.9
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.++++..++|+|||++-
T Consensus 64 ~~~~~~~~~~~~D~Vih~A~ 83 (355)
T PRK10217 64 AELARVFTEHQPDCVMHLAA 83 (355)
T ss_pred HHHHHHHhhcCCCEEEECCc
Confidence 34566666668999999974
No 31
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=45.79 E-value=23 Score=28.51 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.2
Q ss_pred hHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 75 VTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
-....++++++||+||++|.+++-+
T Consensus 58 ~~~~~li~~f~~~~IIn~G~aG~l~ 82 (236)
T PRK06714 58 SCVQLLISEFQPDELFMTGICGSLS 82 (236)
T ss_pred HHHHHHHHhCCCCEEEEEEcccCCC
Confidence 4456677889999999999998754
No 32
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.77 E-value=90 Score=23.03 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=45.8
Q ss_pred EEEEEeecCCCCCCCCchHHHHHh-CCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 26 KVLITGFGPFKTHTINPSWEAVSL-LPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 26 ~VliTGFgpF~~~~~NpS~~vv~~-L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
.|+.+|=+-+.+.-.|.+...+.+ |... ++++ ....+|=+.+...+.+.+.+++.+.|+||..|=.+.
T Consensus 4 ~ii~~~~e~~~g~i~d~n~~~l~~~l~~~----G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 4 AVLTVSDTRSAGEAEDRSGPALVELLEEA----GHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred EEEEEcCcccCCCCccchHHHHHHHHHHc----CCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 477889888888777776655444 5443 3343 344577777777777777766336799999987553
No 33
>PRK09620 hypothetical protein; Provisional
Probab=45.51 E-value=23 Score=28.40 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=18.9
Q ss_pred hHHHHHHHHhCCCEEEEEcccCCCCeeeEeee
Q psy4808 75 VTVPALWKKYNPDLVIHVGVSDMADKITLECK 106 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~ 106 (156)
+.+.+++++.+||+|||+.--+ -+++++.
T Consensus 77 ~~l~~~~~~~~~D~VIH~AAvs---D~~~~~~ 105 (229)
T PRK09620 77 DKMKSIITHEKVDAVIMAAAGS---DWVVDKI 105 (229)
T ss_pred HHHHHHhcccCCCEEEECcccc---ceecccc
Confidence 4555566656899999997643 3445543
No 34
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=45.46 E-value=35 Score=25.91 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 74 DVTVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
..++.+.+...+||+ +|++|.......+.+|+...|
T Consensus 60 ~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~ 96 (191)
T PRK10528 60 LARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQT 96 (191)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHH
Confidence 445556566668986 889999887666666666666
No 35
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=44.46 E-value=45 Score=28.21 Aligned_cols=70 Identities=9% Similarity=0.136 Sum_probs=47.5
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
+..|+.||-+.+.+...+.+..+++++-... ++++ ....+|=+.+...+.+.++.++ ..|+||..|-.+.
T Consensus 161 rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~---G~~v~~~~iv~Dd~~~I~~ai~~~~~~-g~DlIItTGGtsv 231 (312)
T cd03522 161 RVGLIVTGSEVYGGRIEDKFGPVLRARLAAL---GVELVEQVIVPHDEAAIAAAIAEALEA-GAELLILTGGASV 231 (312)
T ss_pred EEEEEEcCCcCCCCcEEEhHHHHHHHHHHHC---CCEEEEEEEcCCCHHHHHHHHHHHhcC-CCCEEEEeCCccc
Confidence 4467889999988776777776655543332 3444 3456777777777888777644 4799998887553
No 36
>PF13983 YsaB: YsaB-like lipoprotein
Probab=43.41 E-value=13 Score=24.76 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.9
Q ss_pred CceEEEEEeecCCCCC
Q psy4808 23 ASFKVLITGFGPFKTH 38 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~ 38 (156)
..-+|-||||+-|.+.
T Consensus 33 ~~q~idv~~FeqfQgS 48 (77)
T PF13983_consen 33 GAQKIDVTGFEQFQGS 48 (77)
T ss_pred CceeEeecchhhhccc
Confidence 3557999999999763
No 37
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=43.35 E-value=69 Score=26.08 Aligned_cols=107 Identities=14% Similarity=0.148 Sum_probs=66.5
Q ss_pred CCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeee--------ecc-c
Q psy4808 40 INPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECK--------AAE-L 110 (156)
Q Consensus 40 ~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~--------A~N-~ 110 (156)
+-||..+++.|..... ..+ .+|-.=-+.+.+...+.++.+..+++=..|+ +-.+.+.+=|+ |.+ .
T Consensus 103 vTts~Avv~aL~al~a-~ri----~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~L-gi~dn~eigr~~P~~~y~lAk~~~ 176 (238)
T COG3473 103 VTTSTAVVEALNALGA-QRI----SVLTPYIDEVNQREIEFLEANGFEIVDFKGL-GITDNLEIGRQEPWAVYRLAKEVF 176 (238)
T ss_pred eechHHHHHHHHhhCc-ceE----EEeccchhhhhhHHHHHHHhCCeEEEEeecc-CCcccchhcccChHHHHHHHHHhc
Confidence 4567777777765442 111 1233333567777888888888877544444 22233333222 222 4
Q ss_pred cCCCCCCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCccccc
Q psy4808 111 CQCTDSIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVC 154 (156)
Q Consensus 111 ~Pd~~gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllC 154 (156)
.||.++--.-+|++..-.++.+|.+.. |.||.-|+.|-.| .|
T Consensus 177 ~~~~DaiFiSCTnlRt~eii~~lE~~~-G~PVvsSN~AT~W-~~ 218 (238)
T COG3473 177 TPDADAIFISCTNLRTFEIIEKLERDT-GVPVVSSNQATLW-MA 218 (238)
T ss_pred CCCCCeEEEEeeccccHHHHHHHHHHh-CCceeeccHHHHH-HH
Confidence 466554434479999999999998887 9999999988766 44
No 38
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=41.57 E-value=14 Score=28.97 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=13.8
Q ss_pred ecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 69 SYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 69 sy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
.++...+.+.+..++.+||+|||.|=-
T Consensus 19 ~~~~~~~~i~~~~~~~~~d~iv~~GDl 45 (214)
T cd07399 19 VFDAQTDWIVDNAEALNIAFVLHLGDI 45 (214)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 344444444444444566666666653
No 39
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=40.91 E-value=44 Score=26.91 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=34.1
Q ss_pred ecCCCCCCCCchHHHHHhCCCC---------CCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEc
Q psy4808 32 FGPFKTHTINPSWEAVSLLPDR---------IPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVG 93 (156)
Q Consensus 32 FgpF~~~~~NpS~~vv~~L~~~---------~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~G 93 (156)
+++|.|++.|||-..-.--.+. .++.+-.|+.+++--++++..+.-.++++...|.++|=+=
T Consensus 19 ~~~i~GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~~~~nv~VKIP 89 (222)
T PRK12656 19 ILPLAGVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRRQCGDDVYIKVP 89 (222)
T ss_pred cCCcceEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5789999999997542111100 0111223555666666666665555555555566666443
No 40
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=39.86 E-value=37 Score=24.83 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 77 VPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 77 l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
+.+.+...+||+ +|++|.........+|+...|
T Consensus 42 ~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~ 75 (171)
T cd04502 42 FDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRD 75 (171)
T ss_pred HHhhhccCCCCEEEEEEecCcccCCCCHHHHHHH
Confidence 334444457764 677888765555566666655
No 41
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=38.61 E-value=46 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=28.0
Q ss_pred CcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEc--ccCCC
Q psy4808 58 NIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVG--VSDMA 98 (156)
Q Consensus 58 ~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~G--v~~~~ 98 (156)
...+....+|=+|+-- -.+..+++..++|.||.+| ..+..
T Consensus 36 ~~~i~~~~VPGa~ElP-~a~~~l~~~~~~Davi~lG~VI~G~T 77 (144)
T PF00885_consen 36 EENIEVIRVPGAFELP-LAAKRLAESGRYDAVIALGCVIRGET 77 (144)
T ss_dssp GGCEEEEEESSGGGHH-HHHHHHHHCSTESEEEEEEEEE--SS
T ss_pred ccceEEEEcCCHHHHH-HHHHHHhcccCccEEEEeccccCCCc
Confidence 3467888999999843 3445666776799999999 44443
No 42
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=37.91 E-value=28 Score=26.03 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=15.6
Q ss_pred hhHHHHHHHHhCCCEEEEEc
Q psy4808 74 DVTVPALWKKYNPDLVIHVG 93 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~G 93 (156)
.+.+.+++++++||+||+.=
T Consensus 78 ~~~l~~~l~~~~PD~IIsTh 97 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIISTH 97 (169)
T ss_pred HHHHHHHHhhcCCCEEEECC
Confidence 35677788899999999753
No 43
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=37.36 E-value=48 Score=24.04 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=22.3
Q ss_pred hHHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 75 VTVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 75 ~~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
+.+.+.+...+||+ +|.+|.........+|+...|
T Consensus 54 ~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~ 89 (177)
T cd01822 54 ARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRAN 89 (177)
T ss_pred HHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHH
Confidence 45555666678984 778898765444555555444
No 44
>KOG1780|consensus
Probab=37.34 E-value=14 Score=24.95 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=10.3
Q ss_pred EEEEEeecCCCCC
Q psy4808 26 KVLITGFGPFKTH 38 (156)
Q Consensus 26 ~VliTGFgpF~~~ 38 (156)
+=+++||+||-+.
T Consensus 28 ~GiLrGyD~FmNi 40 (77)
T KOG1780|consen 28 TGILRGYDPFMNI 40 (77)
T ss_pred EEEEeccchHHhh
Confidence 4489999999663
No 45
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.44 E-value=57 Score=23.99 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 76 TVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 76 ~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
.+.+.+...+||+ +|++|.+.......+|+...|
T Consensus 50 ~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~ 84 (183)
T cd04501 50 RFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDN 84 (183)
T ss_pred HHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHH
Confidence 3344445568985 688999876544445554444
No 46
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=35.09 E-value=1.1e+02 Score=24.69 Aligned_cols=72 Identities=7% Similarity=0.045 Sum_probs=37.0
Q ss_pred hHHHHHHHHhCCCEEEEEcccCCC----C---eeeEeeeecc-c------cCCCCCCceEEecCC--H-HHHHHHHHhhc
Q psy4808 75 VTVPALWKKYNPDLVIHVGVSDMA----D---KITLECKAAE-L------CQCTDSIDVIKTALD--V-ESLVKEFQTNK 137 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~~~~----~---~i~lE~~A~N-~------~Pd~~gp~~~~T~l~--~-~~l~~~l~~~~ 137 (156)
+.+.+.+.+.+||+||.++-|-.. + .+.+.....+ . .|+......+...-+ + +.|++.+.+.
T Consensus 31 ~~~~~~l~~~~pd~ivvis~h~~~~f~~~~~p~~~v~~~~~~~~~~d~~gfp~~~~~~~~~~~g~~~la~~i~~~l~~~- 109 (272)
T PF02900_consen 31 QELGRRLREAKPDVIVVISPHWFTNFFEDNMPAFAVGSGEEPEGIYDFYGFPPELYEIKYPAPGDPELAERIAEHLRKA- 109 (272)
T ss_dssp HHHHHHCHSTS-SEEEEEEEEECCS--TTCEECBEEE-SSEE-B-BS-----SSSBSSS--EEB-HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCCEEEEEeCCcchhhcccCCccEEEecCCCcccccccccccccccccCCCCCCCHHHHHHHHHHHHhc-
Confidence 344444555699999999999877 2 2334444433 1 122221222333333 3 5677888888
Q ss_pred CCCceEEcCCC
Q psy4808 138 ANINQVLDIDI 148 (156)
Q Consensus 138 ~g~~v~~S~dA 148 (156)
|+++..+.+-
T Consensus 110 -g~~~~~~~~~ 119 (272)
T PF02900_consen 110 -GFDVAASPER 119 (272)
T ss_dssp -TS-EEECSS-
T ss_pred -CCCEEeccCc
Confidence 9998775543
No 47
>PRK06455 riboflavin synthase; Provisional
Probab=34.74 E-value=1.1e+02 Score=23.47 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=46.0
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL 103 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l 103 (156)
+.-|+.|=|-.+ +=-.-+++.|.... .+..|....+|=+|+--. .+.++++..+.|.||.+|.-+.....
T Consensus 3 kigIV~s~fn~~-----~L~~gAi~~L~~~g--~~~~I~v~~VPGa~ELP~-aakkL~~~~~yDaVIaLG~VG~t~h~-- 72 (155)
T PRK06455 3 KIGIADTTFARV-----DMGSAAIDELRKLD--PSAKIIRYTVPGIKDLPV-AAKKLIEEEGCDIVMALGMPGPTEKD-- 72 (155)
T ss_pred EEEEEEEecchH-----HHHHHHHHHHHhcC--CCCceEEEECCCHHHHHH-HHHHHHhcCCCCEEEEecceeccCcc--
Confidence 345677777665 22244556666543 345577777888887433 33455666689999999997554444
Q ss_pred eeeec
Q psy4808 104 ECKAA 108 (156)
Q Consensus 104 E~~A~ 108 (156)
|-++.
T Consensus 73 d~Va~ 77 (155)
T PRK06455 73 KYCAH 77 (155)
T ss_pred hhHHH
Confidence 44444
No 48
>PRK08236 hypothetical protein; Provisional
Probab=34.58 E-value=45 Score=26.42 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHh--CCCEEEEEcccCCCC
Q psy4808 73 VDVTVPALWKKY--NPDLVIHVGVSDMAD 99 (156)
Q Consensus 73 v~~~l~~l~~~~--~pd~vih~Gv~~~~~ 99 (156)
+.-....++.++ +||+||++|++++-+
T Consensus 39 AA~~~~~li~~~~~~p~~vI~~GvAGgl~ 67 (212)
T PRK08236 39 AAASTARALAAAAAPYDLVVSAGIAGGFP 67 (212)
T ss_pred HHHHHHHHHHHhccCCCEEEEEecccCCC
Confidence 344556677877 999999999998764
No 49
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=33.98 E-value=95 Score=25.60 Aligned_cols=19 Identities=16% Similarity=0.531 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.+++++.+||+|||+.-
T Consensus 66 ~~~~~~~~~~~d~vih~A~ 84 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAA 84 (349)
T ss_pred HHHHHHhhcCCCEEEECCc
Confidence 4556666668999999975
No 50
>KOG1371|consensus
Probab=33.85 E-value=99 Score=26.69 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.0
Q ss_pred hHHHHHHHHhCCCEEEEEccc
Q psy4808 75 VTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~ 95 (156)
+.|.++.+...+|.|+|++.-
T Consensus 67 ~~L~kvF~~~~fd~V~Hfa~~ 87 (343)
T KOG1371|consen 67 EALEKLFSEVKFDAVMHFAAL 87 (343)
T ss_pred HHHHHHHhhcCCceEEeehhh
Confidence 667888888899999999874
No 51
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=33.66 E-value=1.4e+02 Score=24.73 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=39.6
Q ss_pred hHHHHHHHHhCCCEEEEEc-ccCCCCeeeEe---eeecc----ccCCCC--C-CceEEecCC--H-HHHHHHHHhhcCCC
Q psy4808 75 VTVPALWKKYNPDLVIHVG-VSDMADKITLE---CKAAE----LCQCTD--S-IDVIKTALD--V-ESLVKEFQTNKANI 140 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~G-v~~~~~~i~lE---~~A~N----~~Pd~~--g-p~~~~T~l~--~-~~l~~~l~~~~~g~ 140 (156)
+.+.+.+++.+||++|-+| -|. ..+..+ .++.. ..++.. | |......-| + ++|++.+.+. |+
T Consensus 38 ~~~~~~v~~~~PDvvVvis~dH~--~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~~~~~~~~~lA~~i~~~l~~~--gi 113 (278)
T PRK13364 38 PPVREWLEKVKPDVAVVFYNDHG--LNFFLDKMPTFAVGAAPEYSNADEGWGIPTLAPFKGDTELSWHIIESLVEE--EF 113 (278)
T ss_pred HHHHHHHHHhCCCEEEEECCchH--hhhccccCCeEEEeeCceecCChhhcCCCCCCCCCCCHHHHHHHHHHHHHc--CC
Confidence 4445556777999999999 543 223333 34444 122221 3 332233333 2 5677777788 99
Q ss_pred ceEEcCCC
Q psy4808 141 NQVLDIDI 148 (156)
Q Consensus 141 ~v~~S~dA 148 (156)
++..|++.
T Consensus 114 d~~~~~~~ 121 (278)
T PRK13364 114 DITTCQEM 121 (278)
T ss_pred CeecccCC
Confidence 99888654
No 52
>PLN02427 UDP-apiose/xylose synthase
Probab=33.22 E-value=1.2e+02 Score=25.33 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=11.7
Q ss_pred CceEEEEEeecCCCC
Q psy4808 23 ASFKVLITGFGPFKT 37 (156)
Q Consensus 23 ~~~~VliTGFgpF~~ 37 (156)
+.|+|+|||=.-|-|
T Consensus 13 ~~~~VlVTGgtGfIG 27 (386)
T PLN02427 13 KPLTICMIGAGGFIG 27 (386)
T ss_pred cCcEEEEECCcchHH
Confidence 467899999877755
No 53
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=32.84 E-value=38 Score=27.00 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHhCCCEEEEEcc
Q psy4808 72 YVDVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 72 ~v~~~l~~l~~~~~pd~vih~Gv 94 (156)
.+.+.+.++.++.+||+|||+|=
T Consensus 19 ~~~~~~~~~~~~~~~dfvv~~GD 41 (277)
T cd07378 19 AVAKAMAKVAAELGPDFILSLGD 41 (277)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCC
Confidence 45556666666679999999994
No 54
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=32.74 E-value=96 Score=25.72 Aligned_cols=15 Identities=40% Similarity=0.434 Sum_probs=11.9
Q ss_pred CceEEEEEeecCCCC
Q psy4808 23 ASFKVLITGFGPFKT 37 (156)
Q Consensus 23 ~~~~VliTGFgpF~~ 37 (156)
+.|+|+|||=.-|-|
T Consensus 14 ~~~~vlVtGatGfiG 28 (348)
T PRK15181 14 APKRWLITGVAGFIG 28 (348)
T ss_pred cCCEEEEECCccHHH
Confidence 357899999888855
No 55
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=32.64 E-value=74 Score=31.23 Aligned_cols=68 Identities=26% Similarity=0.190 Sum_probs=37.6
Q ss_pred CCceEEEEEeecCCC-CC---CCCchHHHHHhCCCCCCCCCcEEEE--EEeeeecch---------hhhHHHHHHHHhCC
Q psy4808 22 TASFKVLITGFGPFK-TH---TINPSWEAVSLLPDRIPNTNIEIVK--EQIQVSYNY---------VDVTVPALWKKYNP 86 (156)
Q Consensus 22 ~~~~~VliTGFgpF~-~~---~~NpS~~vv~~L~~~~~~~~~~i~~--~~LpVsy~~---------v~~~l~~l~~~~~p 86 (156)
...++|+|+|=||.+ +. -+-.+-.++++|.+.++ .-+-+.. ..+...|+. -.+.+.++.++++|
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~-~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~i 630 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGY-ETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKP 630 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHHhCCC-EEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCC
Confidence 346799999999984 22 23456667888877653 0000000 000111111 12555667788899
Q ss_pred CEEE
Q psy4808 87 DLVI 90 (156)
Q Consensus 87 d~vi 90 (156)
|.||
T Consensus 631 dgVI 634 (1050)
T TIGR01369 631 EGVI 634 (1050)
T ss_pred CEEE
Confidence 9877
No 56
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=32.45 E-value=1.3e+02 Score=25.39 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=23.1
Q ss_pred eeccCCcccccccCCCCCceEEEEEeecCCCCCCCCchHHHHHhCCCC
Q psy4808 6 ELDTDTRGETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDR 53 (156)
Q Consensus 6 ~~~~~~r~~~~~~~~~~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~ 53 (156)
.|...+|...... ..|+|+|||=.-|-| ..+++.|...
T Consensus 7 ~~~~~~~~~~~~~----~~~~IlVtGgtGfIG------~~l~~~L~~~ 44 (370)
T PLN02695 7 TLAELEREPYWPS----EKLRICITGAGGFIA------SHIARRLKAE 44 (370)
T ss_pred chhhcCCCCCCCC----CCCEEEEECCccHHH------HHHHHHHHhC
Confidence 3444455444433 357899999866644 4566666554
No 57
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=31.43 E-value=72 Score=24.45 Aligned_cols=61 Identities=10% Similarity=0.002 Sum_probs=36.2
Q ss_pred HHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeecc
Q psy4808 47 VSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 47 v~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~N 109 (156)
.+.|..... ....+....+|=+|+-- -.+.++.+..++|.+|.+|.-=.-.+...|-++..
T Consensus 33 ~~~l~~~G~-~~~~i~v~~VPGA~EiP-~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~~~ 93 (158)
T PRK12419 33 VAEIAARGG-AASQVDIFDVPGAFEIP-LHAQTLAKTGRYAAIVAAALVVDGGIYRHEFVAQA 93 (158)
T ss_pred HHHHHHcCC-CccceEEEECCcHHHHH-HHHHHHHhcCCCCEEEEEEEEEcCCCchhHHHHHH
Confidence 344444332 23456777888888833 23345556668999999998544444444544443
No 58
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=30.77 E-value=44 Score=28.60 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=18.2
Q ss_pred hHHHHHHHHhCCCEEEEEccc
Q psy4808 75 VTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~ 95 (156)
+.|.+++++++||.||||.-.
T Consensus 57 ~~L~~vf~~~~idaViHFAa~ 77 (329)
T COG1087 57 ALLTAVFEENKIDAVVHFAAS 77 (329)
T ss_pred HHHHHHHHhcCCCEEEECccc
Confidence 578888999999999999763
No 59
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=30.47 E-value=79 Score=24.35 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=21.6
Q ss_pred chhh-hHHHHHHHHhCCCEEEEEcccCCC
Q psy4808 71 NYVD-VTVPALWKKYNPDLVIHVGVSDMA 98 (156)
Q Consensus 71 ~~v~-~~l~~l~~~~~pd~vih~Gv~~~~ 98 (156)
..+. .....+++.++|+.||++|..++-
T Consensus 54 ~~aa~~~~~~~l~~~~~~~vi~~G~~G~~ 82 (234)
T PF01048_consen 54 VNAAVIATQRLLEEFGPDLVIMIGICGGL 82 (234)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEEEEEEEES
T ss_pred chHHHHHHHHHHHhCCCeEEEEecccccc
Confidence 3344 566677788899999999998865
No 60
>PF06918 DUF1280: Protein of unknown function (DUF1280); InterPro: IPR009689 This family represents a conserved region approximately 200 residues long within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans.
Probab=30.19 E-value=2.1e+02 Score=23.05 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=43.4
Q ss_pred EEeecCCCCCCCCchHHHHHhCCCCCCC-CCcEE---------------EEEEeeeecchhhhHHHHHHHHh--------
Q psy4808 29 ITGFGPFKTHTINPSWEAVSLLPDRIPN-TNIEI---------------VKEQIQVSYNYVDVTVPALWKKY-------- 84 (156)
Q Consensus 29 iTGFgpF~~~~~NpS~~vv~~L~~~~~~-~~~~i---------------~~~~LpVsy~~v~~~l~~l~~~~-------- 84 (156)
-+||+|| ||-.-+..|....-. ..++| ....+-|.-..+.+.|...+++.
T Consensus 80 ~lg~Dvf------~Sr~~i~~l~k~~s~~~~y~i~~~~~~k~~~~g~~v~v~~~~v~~~dv~~~l~~rle~l~~~~~L~~ 153 (224)
T PF06918_consen 80 FLGFDVF------PSRKSIDELEKKVSSIDDYEISTEKITKKTGSGKEVTVVTCVVSIKDVEKLLSRRLEQLSKSGKLIF 153 (224)
T ss_pred hCCCCCC------CCHHHHHHHHHhcCcccceEEEEEEccccCCCCeEEEEEEEEEEecCHHHHHHHHHHHHHHcCCcee
Confidence 3688888 666666666554310 12222 22233345566777666666543
Q ss_pred ----CCCEEEEEcccCCCCeeeEeeeecc
Q psy4808 85 ----NPDLVIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 85 ----~pd~vih~Gv~~~~~~i~lE~~A~N 109 (156)
.-+++|.+|-.-|.....|=-.=-|
T Consensus 154 ~~~t~d~I~l~igGDkGg~~tKl~~~i~N 182 (224)
T PF06918_consen 154 DDGTGDEIWLGIGGDKGGDETKLCLQIEN 182 (224)
T ss_pred CCCCCCCEEEEEcccCCCCceEEEEEEec
Confidence 2368999988877776665544444
No 61
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=29.79 E-value=54 Score=27.53 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=21.2
Q ss_pred hhhhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 72 YVDVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 72 ~v~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
.-.+.+..++++++||+++-.|=.+-
T Consensus 140 eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 140 EMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred hchHHHHHHHHHhCCCEEEEeCchhh
Confidence 44577889999999999998887653
No 62
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=29.75 E-value=81 Score=23.48 Aligned_cols=47 Identities=19% Similarity=0.072 Sum_probs=29.8
Q ss_pred EEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeee
Q psy4808 60 EIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKA 107 (156)
Q Consensus 60 ~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A 107 (156)
.|....+|=+|+--. .+.++.+..++|.+|.+|.-=.-.+...|-++
T Consensus 35 ~i~v~~VPGa~EiP~-a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~ 81 (138)
T TIGR00114 35 NIDVIWVPGAFELPL-AVKKLAETGKYDAVIALGCVIRGGTPHFEYVA 81 (138)
T ss_pred ceEEEECCcHHHHHH-HHHHHHhcCCCCEEEEEeeEEeCCCchhHHHH
Confidence 366778888888433 33455666789999999986333333334333
No 63
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=29.66 E-value=1.1e+02 Score=24.27 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=21.8
Q ss_pred hhhhHHHHHHHHhCCCEEEEEcccCCC
Q psy4808 72 YVDVTVPALWKKYNPDLVIHVGVSDMA 98 (156)
Q Consensus 72 ~v~~~l~~l~~~~~pd~vih~Gv~~~~ 98 (156)
.+.-....++.+++|+.+|.+|.+++-
T Consensus 58 ~aa~~~~~lI~~~~~~~iI~~G~aG~l 84 (218)
T PRK07164 58 NAALATQKLIEKYQIEIIINYGAVGSN 84 (218)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccCc
Confidence 334556777888999999999999876
No 64
>KOG1429|consensus
Probab=29.33 E-value=63 Score=27.66 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=19.7
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
+.++|+|||=+-|-+ ..+++.|...+
T Consensus 26 ~~lrI~itGgaGFIg------SHLvdkLm~eg 51 (350)
T KOG1429|consen 26 QNLRILITGGAGFIG------SHLVDKLMTEG 51 (350)
T ss_pred CCcEEEEecCcchHH------HHHHHHHHhcC
Confidence 358999999999955 46777776554
No 65
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=29.29 E-value=1e+02 Score=28.26 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=16.8
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPD 52 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~ 52 (156)
+.|+|+|||=.-|=| ..+++.|..
T Consensus 314 ~~~~VLVTGatGFIG------s~Lv~~Ll~ 337 (660)
T PRK08125 314 RRTRVLILGVNGFIG------NHLTERLLR 337 (660)
T ss_pred cCCEEEEECCCchHH------HHHHHHHHh
Confidence 467899999988855 345555543
No 66
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=29.10 E-value=1.8e+02 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=21.1
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
..|++||+|-.- ...-.|-|++.|.+.+
T Consensus 5 ~GK~~lI~Gvan----~rSIAwGIAk~l~~~G 32 (259)
T COG0623 5 EGKRILIMGVAN----NRSIAWGIAKALAEQG 32 (259)
T ss_pred CCceEEEEEecc----cccHHHHHHHHHHHcC
Confidence 468899999754 3345799999998764
No 67
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=29.09 E-value=61 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 72 YVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 72 ~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
...+.+.+++++.+||.+|++|=--
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~ 52 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLK 52 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccc
Confidence 5667777888888999999999643
No 68
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=28.90 E-value=1.1e+02 Score=30.03 Aligned_cols=71 Identities=25% Similarity=0.217 Sum_probs=38.8
Q ss_pred CCceEEEEEeecCCC-CCC---CCchHHHHHhCCCCCCCCCcEEEE--EEeeeecchh---------hhHHHHHHHHhCC
Q psy4808 22 TASFKVLITGFGPFK-THT---INPSWEAVSLLPDRIPNTNIEIVK--EQIQVSYNYV---------DVTVPALWKKYNP 86 (156)
Q Consensus 22 ~~~~~VliTGFgpF~-~~~---~NpS~~vv~~L~~~~~~~~~~i~~--~~LpVsy~~v---------~~~l~~l~~~~~p 86 (156)
...++|+|.|=||++ |.. +-.+-.++++|.+.++ .-+-+.. ..+-.+|+.+ .+.+.+++++++|
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~-~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~ 630 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGY-ETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKP 630 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHHHCCC-EEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCC
Confidence 356789999999984 222 2455566777766543 1000000 0011112211 2456677788899
Q ss_pred CEEEE-Ec
Q psy4808 87 DLVIH-VG 93 (156)
Q Consensus 87 d~vih-~G 93 (156)
|.||. +|
T Consensus 631 dgVi~~~g 638 (1066)
T PRK05294 631 KGVIVQFG 638 (1066)
T ss_pred CEEEEEeC
Confidence 98775 55
No 69
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=28.82 E-value=61 Score=25.93 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=16.9
Q ss_pred HHHHHHHhC-----CCEEEEEcccCC
Q psy4808 77 VPALWKKYN-----PDLVIHVGVSDM 97 (156)
Q Consensus 77 l~~l~~~~~-----pd~vih~Gv~~~ 97 (156)
...++.+++ ||+||.+|++++
T Consensus 47 t~~lI~~f~~~~~~pd~IIn~GvAGg 72 (212)
T PRK06026 47 LTAALARLKAAGDLPDLVVSLGSAGS 72 (212)
T ss_pred HHHHHHHhhccCCCCCEEEEecccCC
Confidence 345566666 999999999988
No 70
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=28.80 E-value=57 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=21.7
Q ss_pred chhhhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 71 NYVDVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 71 ~~v~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
..-.+.+.+++++++||+++-.|=.+-
T Consensus 140 ~eqp~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred HHhhHHHHHHHHHcCCCEEEEeCchhh
Confidence 344578889999999999999887663
No 71
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=28.68 E-value=1.2e+02 Score=24.14 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 73 VDVTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 73 v~~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
+.-.+.+++...+|+.||.+|.+++-+
T Consensus 69 aai~~~eLi~~~~~~~iI~~GtaG~l~ 95 (235)
T PRK05819 69 ISIYANELITDYGVKKLIRVGSCGALQ 95 (235)
T ss_pred HHHHHHHHHHhcCCcEEEEEecccCCC
Confidence 345566777778999999999988764
No 72
>PF03167 UDG: Uracil DNA glycosylase superfamily; InterPro: IPR005122 This entry represents various uracil-DNA glycosylases and related DNA glycosylases (3.2.2 from EC), such as uracil-DNA glycosylase [], thermophilic uracil-DNA glycosylase [], G:T/U mismatch-specific DNA glycosylase (Mug) [], and single-strand selective monofunctional uracil-DNA glycosylase (SMUG1) []. These proteins have a 3-layer alpha/beta/alpha structure. Uracil-DNA glycosylases are DNA repair enzymes that excise uracil residues from DNA by cleaving the N-glycosylic bond, initiating the base excision repair pathway. Uracil in DNA can arise either through the deamination of cytosine to form mutagenic U:G mispairs, or through the incorporation of dUMP by DNA polymerase to form U:A pairs []. These aberrant uracil residues are genotoxic []. The sequence of uracil-DNA glycosylase is extremely well conserved [] in bacteria and eukaryotes as well as in herpes viruses. More distantly related uracil-DNA glycosylases are also found in poxviruses []. In eukaryotic cells, UNG activity is found in both the nucleus and the mitochondria. Human UNG1 protein is transported to both the mitochondria and the nucleus []. The N-terminal 77 amino acids of UNG1 seem to be required for mitochondrial localization, but the presence of a mitochondrial transit peptide has not been directly demonstrated. The most N-terminal conserved region contains an aspartic acid residue which has been proposed, based on X-ray structures [] to act as a general base in the catalytic mechanism. ; PDB: 1UI0_A 1UI1_A 2C2P_A 2C2Q_A 1MTL_B 1MWI_A 1MUG_A 1MWJ_A 1OKB_B 1OE6_A ....
Probab=28.63 E-value=66 Score=22.63 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.6
Q ss_pred cchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 70 YNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 70 y~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
.+.+...+.+.++..+|.+||.+|-..
T Consensus 71 ~~~~~~~l~~~l~~~~p~iii~lG~~a 97 (152)
T PF03167_consen 71 IKECEPFLEEELEIIKPKIIICLGKEA 97 (152)
T ss_dssp TTCSHHHHHHHHHHHSSSEEEEESHHH
T ss_pred HHhhhhhHHHHHHhcCCCEEEEEchHH
Confidence 445567788888888999999999854
No 73
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=27.75 E-value=54 Score=24.37 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 74 DVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
.+...+++++.+||++|++|=-..
T Consensus 27 ~~~~~~~i~~~~pd~vv~~GDl~~ 50 (156)
T cd08165 27 ERSFQTSLWLLQPDVVFVLGDLFD 50 (156)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCC
Confidence 345567777889999999997553
No 74
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.63 E-value=93 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 74 DVTVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
.+.+.+.+ ..+||+ +|.+|.+........++...|
T Consensus 38 ~~~l~~~~-~~~pd~vvl~~G~ND~~~~~~~~~~~~~ 73 (169)
T cd01828 38 LARLDEDV-ALQPKAIFIMIGINDLAQGTSDEDIVAN 73 (169)
T ss_pred HHHHHHHh-ccCCCEEEEEeeccCCCCCCCHHHHHHH
Confidence 34455555 558885 678888776544445555444
No 75
>PRK09453 phosphodiesterase; Provisional
Probab=27.62 E-value=60 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=15.5
Q ss_pred hhHHHHHHHHhCCCEEEEEcc
Q psy4808 74 DVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~Gv 94 (156)
.+.+.+.+++.++|.++|+|=
T Consensus 16 ~~~~l~~~~~~~~d~ii~lGD 36 (182)
T PRK09453 16 TEKALELFAQSGADWLVHLGD 36 (182)
T ss_pred HHHHHHHHHhcCCCEEEEccc
Confidence 344555566678999999994
No 76
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=27.29 E-value=1.1e+02 Score=22.14 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=16.4
Q ss_pred HHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 81 WKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 81 ~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
+...+||+ +|++|..........++...|
T Consensus 47 ~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~ 76 (174)
T cd01841 47 LIQKNPSKVFLFLGTNDIGKEVSSNQFIKW 76 (174)
T ss_pred HHhcCCCEEEEEeccccCCCCCCHHHHHHH
Confidence 34457875 678888765444444444333
No 77
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=27.24 E-value=1.4e+02 Score=21.61 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=33.9
Q ss_pred EeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 30 TGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 30 TGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
+++.|=.+-.....+.+++.|.+.. .++.+.. .....+...+.+.+||+|+..+...
T Consensus 6 ~~~~~~~~G~~~~~~~l~~~L~~~g--~~v~v~~--------~~~~~~~~~~~~~~~D~i~~~~~~~ 62 (229)
T cd01635 6 TPLLPGGGGVELVLLDLAKALARRG--HEVEVVA--------LLLLLLLRILRGFKPDVVHAHGYYP 62 (229)
T ss_pred cccCCCCCCchhHHHHHHHHHHHcC--CeEEEEE--------echHHHHHHHhhcCCCEEEEcCCCc
Confidence 3344413446677888999998754 3444433 2334444555567999987666533
No 78
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=26.75 E-value=1.1e+02 Score=25.00 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=33.6
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEE----------------EEEEeeeec-chhhhHHHHHHHHhCC
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEI----------------VKEQIQVSY-NYVDVTVPALWKKYNP 86 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i----------------~~~~LpVsy-~~v~~~l~~l~~~~~p 86 (156)
+++|||||-++- . .+++.|..... ++++ ....+|..- ....+.+.++.+++++
T Consensus 1 ~~~vLv~g~~~~-------~-~~~~~l~~~~~--g~~vi~~d~~~~~~~~~~~d~~~~~p~~~~~~~~~~l~~~~~~~~i 70 (326)
T PRK12767 1 MMNILVTSAGRR-------V-QLVKALKKSLL--KGRVIGADISELAPALYFADKFYVVPKVTDPNYIDRLLDICKKEKI 70 (326)
T ss_pred CceEEEecCCcc-------H-HHHHHHHHhcc--CCEEEEECCCCcchhhHhccCcEecCCCCChhHHHHHHHHHHHhCC
Confidence 468999999642 1 56677665520 1111 122344321 1233566777788899
Q ss_pred CEEEEE
Q psy4808 87 DLVIHV 92 (156)
Q Consensus 87 d~vih~ 92 (156)
|++|..
T Consensus 71 d~ii~~ 76 (326)
T PRK12767 71 DLLIPL 76 (326)
T ss_pred CEEEEC
Confidence 998864
No 79
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=26.69 E-value=67 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 73 VDVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 73 v~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
-.+.+..++++.+||.||++|---.
T Consensus 33 ~~~~~~~~i~~~~pd~vi~lGDl~d 57 (171)
T cd07384 33 MRRAFKTALQRLKPDVVLFLGDLFD 57 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccC
Confidence 3466667778889999999997443
No 80
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=26.67 E-value=96 Score=23.52 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=30.1
Q ss_pred cEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeec
Q psy4808 59 IEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAA 108 (156)
Q Consensus 59 ~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~ 108 (156)
..+....+|=+|+--. .+..+.+..++|.+|.+|.-=.-.....|-++.
T Consensus 46 ~~i~v~~VPGa~EiP~-a~~~l~~~~~~DavIalG~VIrG~T~H~e~V~~ 94 (154)
T PRK00061 46 ENIDVVRVPGAFEIPL-AAKKLAESGKYDAVIALGAVIRGETPHFDYVAN 94 (154)
T ss_pred cceEEEECCCHHHHHH-HHHHHHHcCCCCEEEEEeeEEcCCCchHHHHHH
Confidence 4456667888887333 334556666899999999863333333444433
No 81
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=26.64 E-value=65 Score=28.20 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.2
Q ss_pred hhHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 74 DVTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
.-....++++++|+.||++|.+++-+
T Consensus 57 A~~~~~li~~~~~~~ii~~G~aG~l~ 82 (459)
T PRK06698 57 AACTQTLIHKFDVDAIINTGVAGGLH 82 (459)
T ss_pred HHHHHHHHHhcCCCEEEEEecccCCC
Confidence 34566777889999999999998764
No 82
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.61 E-value=35 Score=26.67 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=34.2
Q ss_pred ceEEEEEeecCCCC---CCCCchHHHHHhCCC-CCC---CC--CcEEEEEEeeeecchhhhHHHHHHHHhCCCE
Q psy4808 24 SFKVLITGFGPFKT---HTINPSWEAVSLLPD-RIP---NT--NIEIVKEQIQVSYNYVDVTVPALWKKYNPDL 88 (156)
Q Consensus 24 ~~~VliTGFgpF~~---~~~NpS~~vv~~L~~-~~~---~~--~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~ 88 (156)
+++|+|||+.+|.- ...||....++.--. ..+ .. ...+.+=.|-+.+-++ +.+..+ .+..|++
T Consensus 1 mk~i~vtGYk~felgiF~~k~p~~~~IKkai~~~l~~lleeGleW~litGqLG~E~WA~-Evv~eL-k~eyp~i 72 (180)
T COG4474 1 MKTILVTGYKSFELGIFKDKDPEVSYIKKAIKKKLEALLEEGLEWVLITGQLGFELWAA-EVVIEL-KEEYPHI 72 (180)
T ss_pred CceEEEecccceeeccccCCCchHHHHHHHHHHHHHHHHhcCceEEEEeccccHHHHHH-HHHHHH-HhhCCCe
Confidence 36899999999952 356787665443211 110 12 3335555677766544 334444 3335543
No 83
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=26.34 E-value=1.2e+02 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.++++..++|+|||+.-
T Consensus 64 ~~~~~~~~~~~d~vvh~a~ 82 (338)
T PRK10675 64 LLTEILHDHAIDTVIHFAG 82 (338)
T ss_pred HHHHHHhcCCCCEEEECCc
Confidence 3455555567999999853
No 84
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=26.21 E-value=58 Score=27.23 Aligned_cols=67 Identities=25% Similarity=0.317 Sum_probs=38.7
Q ss_pred EEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE-EeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE-QIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 26 ~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~-~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
+|||||=+-.-| +++.+.|.+. .++... .=.++... .+.+.+++++.+||+|||..-...-+.=.-|
T Consensus 2 ~iLi~G~~GqLG------~~L~~~l~~~-----~~v~a~~~~~~Ditd-~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~ 69 (281)
T COG1091 2 KILITGANGQLG------TELRRALPGE-----FEVIATDRAELDITD-PDAVLEVIRETRPDVVINAAAYTAVDKAESE 69 (281)
T ss_pred cEEEEcCCChHH------HHHHHHhCCC-----ceEEeccCccccccC-hHHHHHHHHhhCCCEEEECccccccccccCC
Confidence 499999765544 5677777621 122111 11122222 2445677788899999999887655443333
No 85
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.20 E-value=64 Score=23.08 Aligned_cols=14 Identities=36% Similarity=0.954 Sum_probs=6.2
Q ss_pred hCCCE-EEEEcccCC
Q psy4808 84 YNPDL-VIHVGVSDM 97 (156)
Q Consensus 84 ~~pd~-vih~Gv~~~ 97 (156)
++||+ +|++|....
T Consensus 39 ~~pd~vvi~~G~ND~ 53 (157)
T cd01833 39 AKPDVVLLHLGTNDL 53 (157)
T ss_pred CCCCEEEEeccCccc
Confidence 34443 444555443
No 86
>PF03418 Peptidase_A25: Germination protease This family belongs to family A25 of the peptidase classification.; InterPro: IPR005080 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. Metalloproteases are the most diverse of the four main types of protease, with more than 30 families identified to date []. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as abXHEbbHbc, where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family A25 (gpr protease family, clan AE). These are tetrameric proteases that makes the rate-limiting first cut in the small, acid-soluble spore proteins (SASP) of Bacillus subtilis and related species during spore germination. The enzyme lacks clear homology to other known proteases. It processes its own amino end before becoming active to cleave SASPs. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0009847 spore germination; PDB: 1C8B_A.
Probab=25.80 E-value=2e+02 Score=24.94 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=33.5
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhC----------CCCCCCCCcEEEEEE----eeeecchhhhHHHHHHHHhCCCE
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLL----------PDRIPNTNIEIVKEQ----IQVSYNYVDVTVPALWKKYNPDL 88 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L----------~~~~~~~~~~i~~~~----LpVsy~~v~~~l~~l~~~~~pd~ 88 (156)
+..++||.|.|-+.--++-=-..+++.| ++... .+++-.... |-.+-=.-.+.+..+.++.+||+
T Consensus 94 ~~~~iLVVGLGN~~vTPDALGP~vv~~l~VTRHL~~~~pe~~~-~g~r~VsaiaPGVmg~TGiET~eIi~gvv~~~kPd~ 172 (354)
T PF03418_consen 94 KEASILVVGLGNWNVTPDALGPRVVENLLVTRHLFELQPEEVD-EGYRPVSAIAPGVMGQTGIETAEIIKGVVEKIKPDL 172 (354)
T ss_dssp TT--EEEEE-S-SSSGGG-HHHHHHHT----HHHHHHS--SS--SS---EEEE-SGGG---SS-HHHHHHHHHHHH--SE
T ss_pred CCCeEEEEeCCCcCCCccccchhhhhhhhhhhhhhhhCchhhc-cCcceeeEEcCCccccccccHHHHHHHHHHhhCCCE
Confidence 4568999999987544443333444443 33322 334322332 22333345688888999999999
Q ss_pred EEEEcc
Q psy4808 89 VIHVGV 94 (156)
Q Consensus 89 vih~Gv 94 (156)
||.+=.
T Consensus 173 VIaIDA 178 (354)
T PF03418_consen 173 VIAIDA 178 (354)
T ss_dssp EEEEEE
T ss_pred EEEehh
Confidence 998854
No 87
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=25.66 E-value=53 Score=25.01 Aligned_cols=24 Identities=13% Similarity=-0.061 Sum_probs=16.6
Q ss_pred hhHHHHHHHHhCCCEEEEEcccCC
Q psy4808 74 DVTVPALWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~Gv~~~ 97 (156)
.+.+.+++++.++|.|||+|=-..
T Consensus 18 ~~~~~~~~~~~~~d~iih~GDi~~ 41 (178)
T cd07394 18 PAKFKKLLVPGKIQHVLCTGNLCS 41 (178)
T ss_pred HHHHHHHhccCCCCEEEECCCCCC
Confidence 345566666557899999998433
No 88
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=25.42 E-value=99 Score=24.30 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=17.9
Q ss_pred HHHHHHHhC--CCEEEEEcccCCCCee
Q psy4808 77 VPALWKKYN--PDLVIHVGVSDMADKI 101 (156)
Q Consensus 77 l~~l~~~~~--pd~vih~Gv~~~~~~i 101 (156)
+...+++.. ||+|+|.|-.+--..|
T Consensus 133 i~~a~~~~~~~PDVIyd~G~~GkEpmi 159 (181)
T COG1992 133 IESAFRELGGAPDVIYDLGGVGKEPMI 159 (181)
T ss_pred HHHHHHhcCCCCCEEEeCCCCCcccEE
Confidence 555666666 9999999997754333
No 89
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=25.31 E-value=81 Score=25.29 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCEEEEEcccCCCCe
Q psy4808 76 TVPALWKKYNPDLVIHVGVSDMADK 100 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv~~~~~~ 100 (156)
....++..++||+||.+|.+++-..
T Consensus 60 ~t~~~i~~~~p~~iI~~G~aGgl~~ 84 (234)
T COG0775 60 TTTLLLAKFSPDAVINTGSAGGLVS 84 (234)
T ss_pred HHHHHHHhcCCCEEEEeeeccCcCC
Confidence 3345567889999999999987653
No 90
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=25.30 E-value=97 Score=27.87 Aligned_cols=71 Identities=14% Similarity=0.079 Sum_probs=41.3
Q ss_pred CCceEEEEEeecCCC---C--CCCCch-HH----HHHhCCCCCCCCCcEEEE----EEee-----eecchhhhHHHHHHH
Q psy4808 22 TASFKVLITGFGPFK---T--HTINPS-WE----AVSLLPDRIPNTNIEIVK----EQIQ-----VSYNYVDVTVPALWK 82 (156)
Q Consensus 22 ~~~~~VliTGFgpF~---~--~~~NpS-~~----vv~~L~~~~~~~~~~i~~----~~Lp-----Vsy~~v~~~l~~l~~ 82 (156)
-..++||||+=+... . +-.|+| .. +++++...+ .++.+.. ...| +..+.+.+....+.+
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~G--A~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~ 331 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAG--AEVTLISGPVDLADPQGVKVIHVESARQMLAAVEA 331 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCC--CcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHh
Confidence 357799999965442 2 234555 43 455554433 3444332 1122 345567777777776
Q ss_pred HhCCCEEEEEcc
Q psy4808 83 KYNPDLVIHVGV 94 (156)
Q Consensus 83 ~~~pd~vih~Gv 94 (156)
....|++||..-
T Consensus 332 ~~~~Di~I~aAA 343 (475)
T PRK13982 332 ALPADIAIFAAA 343 (475)
T ss_pred hCCCCEEEEecc
Confidence 666799998765
No 91
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=25.22 E-value=55 Score=26.13 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=19.1
Q ss_pred ecchhhhHHHHHHHHhCCCEEEEEcc
Q psy4808 69 SYNYVDVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 69 sy~~v~~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.+.+.+.+++++.+||.+|++|=
T Consensus 42 ~~~~~l~rl~~li~~~~~d~vIi~GD 67 (225)
T TIGR00024 42 QFREIIERALSIADKYGIEALIINGD 67 (225)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEcCc
Confidence 45566677777777778888888886
No 92
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=25.13 E-value=1.6e+02 Score=22.96 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=20.3
Q ss_pred hHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 75 VTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
-.+..++.+++|++||.+|.+++-+
T Consensus 57 ~~~~~li~~~~~~~ii~~G~aG~l~ 81 (230)
T PRK05584 57 LTATILIEHFKVDAVINTGVAGGLA 81 (230)
T ss_pred HHHHHHHHhcCCCEEEEEEecCCCC
Confidence 4456777888999999999988754
No 93
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=24.97 E-value=1.1e+02 Score=22.88 Aligned_cols=49 Identities=18% Similarity=0.143 Sum_probs=30.5
Q ss_pred EEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeecc
Q psy4808 60 EIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 60 ~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~N 109 (156)
.+....+|=+|+-- -.+.++.+..++|.+|.+|.-=+-.+...|-++..
T Consensus 42 ~i~v~~VPGa~EiP-~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V~~~ 90 (141)
T PLN02404 42 NIDVVWVPGSFEIP-VVAQRLAKSGKYDAILCIGAVIRGDTTHYDAVANS 90 (141)
T ss_pred ceEEEEcCcHHHHH-HHHHHHHhcCCCCEEEEEEEEEeCCCchhHHHHHH
Confidence 35667788888733 23345555567999999998544444444444433
No 94
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=24.80 E-value=3.7e+02 Score=21.91 Aligned_cols=73 Identities=16% Similarity=0.086 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCEEEEEcccCCCCeee-Eeee-------eccccCCCCCCceEEecCC--H-HHHHHHHHhhcCCCceEE
Q psy4808 76 TVPALWKKYNPDLVIHVGVSDMADKIT-LECK-------AAELCQCTDSIDVIKTALD--V-ESLVKEFQTNKANINQVL 144 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv~~~~~~i~-lE~~-------A~N~~Pd~~gp~~~~T~l~--~-~~l~~~l~~~~~g~~v~~ 144 (156)
.+.+.+.+.+||.||.++-|....... +-.. .....|+....-.|...-| + +.|++.+++. |+++..
T Consensus 34 ~l~~~l~~~~Pd~IvvvS~Hw~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~y~~~g~~~LA~~i~~~l~~~--Gi~~~~ 111 (272)
T cd07362 34 EIRKRIEELKPDVILVISCHWMSSSFHHFVDATPRHGGLTAVECPDLISDVPYDYPGDPELGRLLVEEGQEA--GLRVKA 111 (272)
T ss_pred HHHHHhhHcCCCEEEEECCCcccccceeeeccCccccccccCcCCchhhccccCCCCCHHHHHHHHHHHHHc--CCceee
Confidence 344445556999999999986554310 0000 0001222110112333333 2 4567777777 999987
Q ss_pred cCCCCc
Q psy4808 145 DIDISR 150 (156)
Q Consensus 145 S~dAG~ 150 (156)
+.++.+
T Consensus 112 ~~~~~~ 117 (272)
T cd07362 112 VNDPTY 117 (272)
T ss_pred ccCCCC
Confidence 776544
No 95
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.79 E-value=1.1e+02 Score=21.20 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=29.7
Q ss_pred CCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCC-CEEEEEcccC
Q psy4808 39 TINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNP-DLVIHVGVSD 96 (156)
Q Consensus 39 ~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~p-d~vih~Gv~~ 96 (156)
..-|..++++.+.+.. .++-..+....-.+..+.+.+..+- +..| ++.|.+|=..
T Consensus 35 ~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~-~~~~~~~~i~vGG~~ 90 (119)
T cd02067 35 VDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELK-EAGLDDIPVLVGGAI 90 (119)
T ss_pred CCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHH-HcCCCCCeEEEECCC
Confidence 4456667777766544 2332233344555566655555543 3456 7766666543
No 96
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=24.67 E-value=79 Score=24.86 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=22.1
Q ss_pred ecCCHHHHHHHHHhhcCCCceEEcCCCCcccccC
Q psy4808 122 TALDVESLVKEFQTNKANINQVLDIDISRVDVCN 155 (156)
Q Consensus 122 T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN 155 (156)
.++|.+-+++.|+.. |+++++..+ +|.||
T Consensus 84 ~~vp~d~L~~~L~~~--G~~ae~~~~---~i~T~ 112 (190)
T PF09840_consen 84 YPVPPDLLVDALKLL--GYKAEYRED---VIKTD 112 (190)
T ss_pred CCCCHHHHHHHHHhC--CCeeEEeCC---eEEec
Confidence 778888888888888 888888766 54555
No 97
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=24.66 E-value=1.5e+02 Score=22.81 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=14.9
Q ss_pred cchhhhHHHHHHHHh-CCCEEEEEcc
Q psy4808 70 YNYVDVTVPALWKKY-NPDLVIHVGV 94 (156)
Q Consensus 70 y~~v~~~l~~l~~~~-~pd~vih~Gv 94 (156)
.+.+.+.+..+.+.. ++|.+||..-
T Consensus 76 ~~~~~~~~~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 76 PQNYQQLADTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 445555555544443 5799999753
No 98
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=24.59 E-value=71 Score=24.26 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 73 VDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 73 v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
....+.+++++.+||+||++|=-.
T Consensus 29 ~~~~~~~~~~~~~~d~vv~~GDl~ 52 (199)
T cd07383 29 TVAFIERVLDAEKPDLVVLTGDLI 52 (199)
T ss_pred HHHHHHHHHhhcCCCEEEECCccc
Confidence 345566677778999999999743
No 99
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=24.30 E-value=89 Score=24.65 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.1
Q ss_pred hHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 75 VTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
-.+..++.+++||++|.+|.+++-+
T Consensus 45 ~~~~~~i~~~~~~~ii~~G~aG~l~ 69 (222)
T TIGR03664 45 AATARLLARAPYELVINAGIAGGFP 69 (222)
T ss_pred HHHHHHHHhCCCCEEEEEEEcccCC
Confidence 3456677888999999999998754
No 100
>KOG1431|consensus
Probab=23.47 E-value=1.3e+02 Score=25.03 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=35.9
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEE--E-EEeeeecchhhhHHHHHHHHhCCCEEEEEcc
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIV--K-EQIQVSYNYVDVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~--~-~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv 94 (156)
+++|+|||=----| ..|++-+++... .+-... . ..+..+ -....+.++++.+|-.|||+..
T Consensus 1 s~kIlVtGg~GLVG------sAi~~vv~~q~~-~~e~wvf~~skd~DLt---~~a~t~~lF~~ekPthVIhlAA 64 (315)
T KOG1431|consen 1 SKKILVTGGTGLVG------SAIVKVVQEQGF-DDENWVFIGSKDADLT---NLADTRALFESEKPTHVIHLAA 64 (315)
T ss_pred CceEEEecCCchHH------HHHHHHHHhcCC-CCcceEEecccccccc---chHHHHHHHhccCCceeeehHh
Confidence 36899998644322 456777776654 222211 1 122211 1244567888899999999854
No 101
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=23.42 E-value=74 Score=23.19 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=15.5
Q ss_pred hHHHHHHHHh-CCCEEEEEcccC
Q psy4808 75 VTVPALWKKY-NPDLVIHVGVSD 96 (156)
Q Consensus 75 ~~l~~l~~~~-~pd~vih~Gv~~ 96 (156)
+.+.++++.. ++|.|||+|--.
T Consensus 17 ~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 17 ELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred HhHHHHHhhccCCCEEEEcCCCC
Confidence 3444555665 799999999853
No 102
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=23.00 E-value=23 Score=24.61 Aligned_cols=13 Identities=8% Similarity=-0.036 Sum_probs=9.7
Q ss_pred EEcCCCCcccccCC
Q psy4808 143 VLDIDISRVDVCNR 156 (156)
Q Consensus 143 ~~S~dAG~yllCN~ 156 (156)
..+++.|.| .|++
T Consensus 72 ~~~d~~g~Y-~C~a 84 (98)
T cd05898 72 MEADFQTHY-NCTA 84 (98)
T ss_pred ccccCCcEE-EEEE
Confidence 345669999 9985
No 103
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=22.91 E-value=55 Score=32.88 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.2
Q ss_pred HHhCCCEEEEEcccCC
Q psy4808 82 KKYNPDLVIHVGVSDM 97 (156)
Q Consensus 82 ~~~~pd~vih~Gv~~~ 97 (156)
+.++.|+|||||.|+.
T Consensus 600 ~~F~ADAviH~GtHGt 615 (1220)
T PLN03069 600 KIFKADAVLHFGTHGS 615 (1220)
T ss_pred hhcCCCEEEEcCCCCC
Confidence 3457899999999985
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=22.91 E-value=62 Score=19.78 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=13.9
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCC
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPD 52 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~ 52 (156)
..|.|+||.|=.. ..+...+..
T Consensus 2 ~wI~V~Gf~~~~~------~~vl~~F~~ 23 (53)
T PF14605_consen 2 TWISVSGFPPDLA------EEVLEHFAS 23 (53)
T ss_pred cEEEEEeECchHH------HHHHHHHHh
Confidence 4689999986322 455555554
No 105
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=22.77 E-value=1.1e+02 Score=24.49 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=13.3
Q ss_pred eecCCCCCCCCchHHH
Q psy4808 31 GFGPFKTHTINPSWEA 46 (156)
Q Consensus 31 GFgpF~~~~~NpS~~v 46 (156)
.+++|.|++.|||-..
T Consensus 18 ~~~~i~GvTTNPsll~ 33 (220)
T PRK12653 18 RIFPLAGVTTNPSIIA 33 (220)
T ss_pred hCCCccEEeCCHHHHH
Confidence 4688999999999754
No 106
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=22.71 E-value=1.1e+02 Score=24.42 Aligned_cols=16 Identities=38% Similarity=0.279 Sum_probs=13.0
Q ss_pred eecCCCCCCCCchHHH
Q psy4808 31 GFGPFKTHTINPSWEA 46 (156)
Q Consensus 31 GFgpF~~~~~NpS~~v 46 (156)
.+++|.|++.|||-..
T Consensus 18 ~~~~i~GvTTNPsll~ 33 (220)
T PRK12655 18 RIFPIAGVTTNPSIIA 33 (220)
T ss_pred hCCCccEEeCCHHHHH
Confidence 4678999999999744
No 107
>KOG1394|consensus
Probab=22.63 E-value=48 Score=29.14 Aligned_cols=22 Identities=36% Similarity=0.819 Sum_probs=17.3
Q ss_pred ceEEEEEeec---CCCCCCCCchHHH
Q psy4808 24 SFKVLITGFG---PFKTHTINPSWEA 46 (156)
Q Consensus 24 ~~~VliTGFg---pF~~~~~NpS~~v 46 (156)
+++|+|||.| || |...+.+|.=
T Consensus 23 ~rRVVITGmG~VTpl-G~~v~~~w~~ 47 (440)
T KOG1394|consen 23 MRRVVITGMGAVTPL-GNGVHTSWRN 47 (440)
T ss_pred ceeEEEeccceeecC-CCChHHHHHH
Confidence 6799999997 77 5577788863
No 108
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=22.48 E-value=73 Score=22.33 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=20.7
Q ss_pred ecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 69 SYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 69 sy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
.++.+.+.|.+++++.+||+|+..-..+
T Consensus 84 ~~~~~~~~l~~~i~~~~p~~V~t~~~~~ 111 (128)
T PF02585_consen 84 SWEELVRDLEDLIREFRPDVVFTPDPDD 111 (128)
T ss_dssp HHHHHHHHHHHHHHHH-ESEEEEE-STT
T ss_pred cHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4677888889999999999988765433
No 109
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=22.39 E-value=1.2e+02 Score=20.41 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhCCCEEEEEcccCCCCeee
Q psy4808 74 DVTVPALWKKYNPDLVIHVGVSDMADKIT 102 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~vih~Gv~~~~~~i~ 102 (156)
...+.....+.+||+||+.|=-.......
T Consensus 20 ~~~~~~~~~~~~~d~ii~~GD~~~~~~~~ 48 (200)
T PF00149_consen 20 FRKLDEIAAENKPDFIIFLGDLVDGGNPS 48 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEESTSSSSSSHH
T ss_pred HHHHHHHhccCCCCEEEeecccccccccc
Confidence 34445555667999999999865544433
No 110
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=22.25 E-value=1e+02 Score=24.71 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.4
Q ss_pred HHHHHHHh-----CCCEEEEEcccCC
Q psy4808 77 VPALWKKY-----NPDLVIHVGVSDM 97 (156)
Q Consensus 77 l~~l~~~~-----~pd~vih~Gv~~~ 97 (156)
...++.++ +||+||.+|.+++
T Consensus 47 ~~~lI~~f~~~~~~pd~VIN~GvAG~ 72 (212)
T TIGR01705 47 VGAELAGLDAADALPDLVVSLGSAGS 72 (212)
T ss_pred HHHHHHhhhhccCCCCEEEEecccCC
Confidence 34556654 8999999999987
No 111
>PRK12362 germination protease; Provisional
Probab=22.15 E-value=1.7e+02 Score=24.99 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=45.5
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCC--C---CCCcEEEEEEeeeecc----------hhhhHHHHHHHHhCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI--P---NTNIEIVKEQIQVSYN----------YVDVTVPALWKKYNPD 87 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~--~---~~~~~i~~~~LpVsy~----------~v~~~l~~l~~~~~pd 87 (156)
+..++||.|.|-+.--++-==..++..|.-.. + +.. +....=||+-- ...+.+..+.++++||
T Consensus 97 ~~~~iLVvGLGN~~vTpDaLGP~Vv~~l~vTrhl~~~~~~~--~~~~~~pV~AiaPGVmg~TGiet~Eii~gIv~k~kpd 174 (318)
T PRK12362 97 KEMTVLVVGLGNWNVTPDALGPKVVSKLMVTRHLKEYAPEE--IDEGIRPVCAIAPGVLGITGIETAEIIKGVVEKIKPD 174 (318)
T ss_pred CCCcEEEEEcCCCCcCccccchhhhhhhhhhhhhhhhcCch--hcCCCCcceEecCCcccccchhHHHHHHHHHHhcCCC
Confidence 45679999999886544444445555554221 0 101 11223455554 6788999999999999
Q ss_pred EEEEEcccC
Q psy4808 88 LVIHVGVSD 96 (156)
Q Consensus 88 ~vih~Gv~~ 96 (156)
+||.+=.-.
T Consensus 175 ~IIAIDALa 183 (318)
T PRK12362 175 LVIAIDALA 183 (318)
T ss_pred EEEEEeccc
Confidence 999886543
No 112
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=22.04 E-value=97 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.3
Q ss_pred hHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 75 VTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
-....++.+++||+||.+|.+++-+
T Consensus 79 ~~~~~li~~~~~~~II~~G~aG~l~ 103 (249)
T PLN02584 79 LVTYAAIQALKPDLIINAGTAGGFK 103 (249)
T ss_pred HHHHHHHHhcCCCEEEEEecccCcC
Confidence 3456677889999999999998843
No 113
>PLN00016 RNA-binding protein; Provisional
Probab=22.02 E-value=1.3e+02 Score=25.34 Aligned_cols=16 Identities=13% Similarity=-0.070 Sum_probs=9.4
Q ss_pred HHHHHHhCCCEEEEEc
Q psy4808 78 PALWKKYNPDLVIHVG 93 (156)
Q Consensus 78 ~~l~~~~~pd~vih~G 93 (156)
.+++...++|+|||+.
T Consensus 123 ~~~~~~~~~d~Vi~~~ 138 (378)
T PLN00016 123 KSKVAGAGFDVVYDNN 138 (378)
T ss_pred HhhhccCCccEEEeCC
Confidence 3344334678888863
No 114
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=22.00 E-value=57 Score=32.72 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=13.2
Q ss_pred HHhCCCEEEEEcccCC
Q psy4808 82 KKYNPDLVIHVGVSDM 97 (156)
Q Consensus 82 ~~~~pd~vih~Gv~~~ 97 (156)
+.++.|+|||||.|+.
T Consensus 593 ~~F~ADAviH~GtHGt 608 (1209)
T PRK13405 593 EDFGADAVLHFGTHGA 608 (1209)
T ss_pred hhcCCCEEEECCCCcc
Confidence 3457899999999985
No 115
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=21.80 E-value=59 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=13.1
Q ss_pred HHhCCCEEEEEcccCC
Q psy4808 82 KKYNPDLVIHVGVSDM 97 (156)
Q Consensus 82 ~~~~pd~vih~Gv~~~ 97 (156)
+.++.|+|||||.|+.
T Consensus 573 ~~f~ADAviH~GtHGt 588 (1216)
T TIGR02025 573 RDFKADAVLHFGTHGS 588 (1216)
T ss_pred hhcCCCEEEECCCCcC
Confidence 3457899999999985
No 116
>PRK06849 hypothetical protein; Provisional
Probab=21.79 E-value=98 Score=26.22 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=38.6
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCC------CC--c----E-E-EEEEee--e-ecchhhhHHHHHHHHhC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPN------TN--I----E-I-VKEQIQ--V-SYNYVDVTVPALWKKYN 85 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~------~~--~----~-i-~~~~Lp--V-sy~~v~~~l~~l~~~~~ 85 (156)
..|+|||||-+.. .+-.+++.|.+.+.. .. . + + ....+| - +-+...+.+.++.++++
T Consensus 3 ~~~~VLI~G~~~~------~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~ 76 (389)
T PRK06849 3 TKKTVLITGARAP------AALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQREN 76 (389)
T ss_pred CCCEEEEeCCCcH------HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 4689999986542 467788888876530 00 0 0 1 112232 1 11223466677778889
Q ss_pred CCEEEEEcc
Q psy4808 86 PDLVIHVGV 94 (156)
Q Consensus 86 pd~vih~Gv 94 (156)
+|+||-..-
T Consensus 77 id~vIP~~e 85 (389)
T PRK06849 77 IDLLIPTCE 85 (389)
T ss_pred CCEEEECCh
Confidence 999997653
No 117
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=21.66 E-value=1.2e+02 Score=29.82 Aligned_cols=65 Identities=23% Similarity=0.083 Sum_probs=38.2
Q ss_pred CceEEEEEeecCCC---CCCC-CchHHHHHhCCCCCC-----C---C----CcEE--EEEEeeeecchhhhHHHHHHHHh
Q psy4808 23 ASFKVLITGFGPFK---THTI-NPSWEAVSLLPDRIP-----N---T----NIEI--VKEQIQVSYNYVDVTVPALWKKY 84 (156)
Q Consensus 23 ~~~~VliTGFgpF~---~~~~-NpS~~vv~~L~~~~~-----~---~----~~~i--~~~~LpVsy~~v~~~l~~l~~~~ 84 (156)
.+++|+|+|=||++ +... =.+-.++++|.+.++ + . ++.+ ....-|.+ .+.+.++.+++
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~----~e~vl~I~~~e 629 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLT----LEDVLNVAEAE 629 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCC----HHHHHHHHhhc
Confidence 46899999999984 2222 256667777776553 0 0 0100 11122332 25566777888
Q ss_pred CCCEEEE
Q psy4808 85 NPDLVIH 91 (156)
Q Consensus 85 ~pd~vih 91 (156)
+||.||-
T Consensus 630 ~~dgVI~ 636 (1068)
T PRK12815 630 NIKGVIV 636 (1068)
T ss_pred CCCEEEE
Confidence 9999885
No 118
>PRK07904 short chain dehydrogenase; Provisional
Probab=21.34 E-value=3.1e+02 Score=21.43 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=18.5
Q ss_pred EEEEEeee-ecchhhhHHHHHHHHhCCCEEE-EEccc
Q psy4808 61 IVKEQIQV-SYNYVDVTVPALWKKYNPDLVI-HVGVS 95 (156)
Q Consensus 61 i~~~~LpV-sy~~v~~~l~~l~~~~~pd~vi-h~Gv~ 95 (156)
++...+.+ +.+.+.+.+.++++..++|++| +.|..
T Consensus 62 v~~~~~D~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 98 (253)
T PRK07904 62 VEVIDFDALDTDSHPKVIDAAFAGGDVDVAIVAFGLL 98 (253)
T ss_pred eEEEEecCCChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 33444444 2444555566665534689665 55654
No 119
>PLN02240 UDP-glucose 4-epimerase
Probab=20.98 E-value=2.2e+02 Score=23.20 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=13.6
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.+++++.++|+|||+.-
T Consensus 72 ~l~~~~~~~~~d~vih~a~ 90 (352)
T PLN02240 72 ALEKVFASTRFDAVIHFAG 90 (352)
T ss_pred HHHHHHHhCCCCEEEEccc
Confidence 3455555568999999864
No 120
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=20.84 E-value=1.4e+02 Score=22.72 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=33.2
Q ss_pred EEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeec
Q psy4808 61 IVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAA 108 (156)
Q Consensus 61 i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~ 108 (156)
|....+|=+|+-- -...++.+..++|.||.+|.-=+-...-.|-+|-
T Consensus 48 i~vv~VPGa~EiP-l~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~ 94 (152)
T COG0054 48 IDVVRVPGAFEIP-LAAKKLARTGKYDAVVALGAVIRGETYHFDYVAN 94 (152)
T ss_pred ceEEEeCCcchhH-HHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHH
Confidence 6677788888854 5566777788999999999854444444444443
No 121
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=20.83 E-value=63 Score=32.73 Aligned_cols=16 Identities=31% Similarity=0.582 Sum_probs=13.2
Q ss_pred HHhCCCEEEEEcccCC
Q psy4808 82 KKYNPDLVIHVGVSDM 97 (156)
Q Consensus 82 ~~~~pd~vih~Gv~~~ 97 (156)
+.++.|+|||||.|+.
T Consensus 587 ~~F~ADAviH~GtHGt 602 (1310)
T PRK12493 587 KVWGADAVLHFGTHGA 602 (1310)
T ss_pred hhcCCCEEEECCCCcC
Confidence 3457899999999985
No 122
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=20.74 E-value=1.3e+02 Score=24.54 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=22.8
Q ss_pred chhhhHHHHHHHHhCCCEEEEEcccCCCC
Q psy4808 71 NYVDVTVPALWKKYNPDLVIHVGVSDMAD 99 (156)
Q Consensus 71 ~~v~~~l~~l~~~~~pd~vih~Gv~~~~~ 99 (156)
+.+...+.+.+++.+||+||.+|-+....
T Consensus 46 e~veaav~~~~e~~~pDfvi~isPNpaaP 74 (277)
T COG1927 46 ECVEAAVTEMLEEFNPDFVIYISPNPAAP 74 (277)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 44566777888999999999999876543
No 123
>PRK12827 short chain dehydrogenase; Provisional
Probab=20.72 E-value=3e+02 Score=20.74 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=12.5
Q ss_pred hhHHHHHHHH-hCCCEEEEEcc
Q psy4808 74 DVTVPALWKK-YNPDLVIHVGV 94 (156)
Q Consensus 74 ~~~l~~l~~~-~~pd~vih~Gv 94 (156)
.+.+..+.+. .++|.+||..-
T Consensus 75 ~~~~~~~~~~~~~~d~vi~~ag 96 (249)
T PRK12827 75 RAALDAGVEEFGRLDILVNNAG 96 (249)
T ss_pred HHHHHHHHHHhCCCCEEEECCC
Confidence 3444444443 26799999864
No 124
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=20.67 E-value=69 Score=29.06 Aligned_cols=16 Identities=44% Similarity=0.625 Sum_probs=12.6
Q ss_pred HHHHhCCCEEEEEccc
Q psy4808 80 LWKKYNPDLVIHVGVS 95 (156)
Q Consensus 80 l~~~~~pd~vih~Gv~ 95 (156)
.+.+++||+|||+|-.
T Consensus 163 ~ma~~~~D~viH~GDy 178 (522)
T COG3540 163 TMAKEEPDFVIHLGDY 178 (522)
T ss_pred HHHhcCCCEEEEcCCe
Confidence 3456789999999964
No 125
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=20.34 E-value=3.1e+02 Score=21.83 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=38.2
Q ss_pred cCCCCCCCCch-HHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcc
Q psy4808 33 GPFKTHTINPS-WEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 33 gpF~~~~~NpS-~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv 94 (156)
|+..+...|-+ ++-++++.+.. ++++....-+.+.+...+.+.++.++ ++|+||..|-
T Consensus 8 g~~~D~~~n~~~~~G~~~~~~~~---gv~~~~~e~~~~~~~~~~~i~~~~~~-g~dlIi~~g~ 66 (258)
T cd06353 8 GPIGDQGWNYAHDEGRKAAEKAL---GVEVTYVENVPEGADAERVLRELAAQ-GYDLIFGTSF 66 (258)
T ss_pred CCCCccchhHHHHHHHHHHHHhc---CCeEEEEecCCchHhHHHHHHHHHHc-CCCEEEECch
Confidence 78888888888 77777776642 45543333221556667777777665 7888887553
No 126
>PRK06194 hypothetical protein; Provisional
Probab=20.25 E-value=1.2e+02 Score=23.83 Aligned_cols=25 Identities=12% Similarity=0.169 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHh-CCCEEEEEcccC
Q psy4808 72 YVDVTVPALWKKY-NPDLVIHVGVSD 96 (156)
Q Consensus 72 ~v~~~l~~l~~~~-~pd~vih~Gv~~ 96 (156)
.+.+.+..+.+.+ ++|++||..-..
T Consensus 69 ~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 69 QVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3444444444443 569999986543
Done!