Query psy4808
Match_columns 156
No_of_seqs 118 out of 746
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:16:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hps_A Pyrrolidone-carboxylate 100.0 4.7E-43 1.6E-47 280.3 15.2 131 22-156 21-167 (228)
2 4gxh_A Pyrrolidone-carboxylate 100.0 3.8E-43 1.3E-47 279.1 14.4 129 24-156 2-146 (216)
3 3ro0_A Pyrrolidone-carboxylate 100.0 6.2E-43 2.1E-47 278.9 13.8 129 24-156 2-146 (223)
4 3lac_A Pyrrolidone-carboxylate 100.0 9.7E-43 3.3E-47 276.5 14.6 129 24-156 1-145 (215)
5 3giu_A Pyrrolidone-carboxylate 100.0 6.3E-43 2.1E-47 277.6 13.4 129 23-156 2-146 (215)
6 1x10_A Pyrrolidone-carboxylate 100.0 2.2E-42 7.7E-47 273.2 14.1 128 25-156 1-144 (208)
7 1a2z_A Pyrrolidone carboxyl pe 100.0 2.4E-42 8.3E-47 275.1 14.1 128 25-156 2-145 (220)
8 1iu8_A Pyrrolidone-carboxylate 100.0 1.5E-41 5.1E-46 268.2 11.6 125 25-156 1-141 (206)
9 2ebj_A Pyrrolidone carboxyl pe 100.0 4.2E-41 1.4E-45 263.1 12.8 125 26-156 1-141 (192)
10 3s2u_A UDP-N-acetylglucosamine 84.4 0.47 1.6E-05 38.6 2.4 30 23-54 1-30 (365)
11 3sc6_A DTDP-4-dehydrorhamnose 75.0 1.7 5.8E-05 33.3 2.6 62 23-95 4-66 (287)
12 4b8w_A GDP-L-fucose synthase; 73.0 2.3 7.8E-05 32.5 2.9 66 23-95 5-71 (319)
13 3otg_A CALG1; calicheamicin, T 69.7 4.8 0.00016 32.1 4.2 31 22-54 18-48 (412)
14 1t2a_A GDP-mannose 4,6 dehydra 68.8 4.2 0.00014 32.4 3.7 28 10-37 10-37 (375)
15 2pbq_A Molybdenum cofactor bio 68.2 6.4 0.00022 29.1 4.4 78 24-105 7-89 (178)
16 1e6u_A GDP-fucose synthetase; 66.3 2.3 8E-05 32.9 1.7 61 24-95 3-65 (321)
17 1jlj_A Gephyrin; globular alph 64.7 12 0.0004 28.0 5.3 80 16-96 8-89 (189)
18 1rpn_A GDP-mannose 4,6-dehydra 61.7 6.9 0.00024 30.4 3.7 20 75-94 76-95 (335)
19 3i6i_A Putative leucoanthocyan 61.7 3.7 0.00013 32.5 2.0 29 66-95 65-93 (346)
20 4egb_A DTDP-glucose 4,6-dehydr 60.3 5.2 0.00018 31.3 2.7 21 75-95 88-108 (346)
21 2is8_A Molybdopterin biosynthe 59.8 13 0.00044 26.9 4.6 79 24-106 3-84 (164)
22 3m2p_A UDP-N-acetylglucosamine 59.1 5.7 0.00019 30.7 2.7 62 23-96 1-73 (311)
23 2pzm_A Putative nucleotide sug 57.8 12 0.0004 29.2 4.4 64 23-95 19-98 (330)
24 4amg_A Snogd; transferase, pol 57.7 8.3 0.00028 30.6 3.5 30 23-54 21-50 (400)
25 2g2c_A Putative molybdenum cof 56.9 13 0.00044 27.0 4.2 78 24-106 7-91 (167)
26 3oti_A CALG3; calicheamicin, T 55.4 11 0.00038 30.1 3.9 38 14-54 11-48 (398)
27 2ydy_A Methionine adenosyltran 54.9 6.3 0.00021 30.4 2.3 63 24-95 2-70 (315)
28 3rfq_A Pterin-4-alpha-carbinol 54.1 15 0.00052 27.5 4.2 76 24-104 32-109 (185)
29 1vl0_A DTDP-4-dehydrorhamnose 53.9 11 0.00039 28.5 3.6 62 22-94 10-72 (292)
30 1di6_A MOGA, molybdenum cofact 52.4 28 0.00097 26.1 5.6 82 24-106 5-88 (195)
31 2q1w_A Putative nucleotide sug 51.6 10 0.00036 29.6 3.1 73 14-95 11-99 (333)
32 1n7h_A GDP-D-mannose-4,6-dehyd 51.4 10 0.00035 30.2 3.1 19 76-94 97-115 (381)
33 2pk3_A GDP-6-deoxy-D-LYXO-4-he 50.9 14 0.00046 28.5 3.7 64 23-95 11-84 (321)
34 2yy7_A L-threonine dehydrogena 50.2 6.3 0.00022 30.2 1.6 20 75-94 58-77 (312)
35 1ek6_A UDP-galactose 4-epimera 47.8 13 0.00044 29.0 3.1 19 76-94 72-90 (348)
36 4fzr_A SSFS6; structural genom 46.5 18 0.00062 28.7 3.9 29 24-54 15-43 (398)
37 1orr_A CDP-tyvelose-2-epimeras 45.0 15 0.00051 28.4 3.1 19 76-94 64-82 (347)
38 1ivn_A Thioesterase I; hydrola 44.7 22 0.00077 25.0 3.8 36 74-109 51-87 (190)
39 1rvv_A Riboflavin synthase; tr 42.0 26 0.00088 25.6 3.7 47 47-95 35-81 (154)
40 3ia7_A CALG4; glycosysltransfe 41.4 14 0.00049 29.0 2.5 28 25-54 5-32 (402)
41 4f6c_A AUSA reductase domain p 40.8 45 0.0016 26.9 5.5 25 22-52 67-91 (427)
42 2c20_A UDP-glucose 4-epimerase 40.6 17 0.00057 28.1 2.7 20 75-94 57-76 (330)
43 1n2s_A DTDP-4-, DTDP-glucose o 39.1 16 0.00054 27.8 2.3 58 25-94 1-63 (299)
44 3nzo_A UDP-N-acetylglucosamine 38.9 26 0.00088 28.5 3.7 20 76-95 103-122 (399)
45 1hqk_A 6,7-dimethyl-8-ribityll 38.7 25 0.00087 25.6 3.3 47 47-95 35-81 (154)
46 3nq4_A 6,7-dimethyl-8-ribityll 38.2 32 0.0011 25.2 3.8 49 59-108 47-95 (156)
47 3enk_A UDP-glucose 4-epimerase 36.6 17 0.00057 28.2 2.1 20 75-94 68-87 (341)
48 3tsa_A SPNG, NDP-rhamnosyltran 36.6 24 0.00084 27.8 3.1 28 25-54 2-29 (391)
49 2obx_A DMRL synthase 1, 6,7-di 36.6 32 0.0011 25.2 3.5 50 59-109 45-94 (157)
50 1udb_A Epimerase, UDP-galactos 35.8 25 0.00086 27.2 3.1 19 76-94 64-82 (338)
51 1bbg_A Pollen allergen 5; prot 35.2 10 0.00036 21.3 0.5 13 142-154 16-28 (40)
52 3d7l_A LIN1944 protein; APC893 35.2 22 0.00076 25.3 2.5 61 24-94 3-67 (202)
53 1ute_A Protein (II purple acid 34.9 24 0.00083 26.6 2.8 24 72-95 30-53 (313)
54 1di0_A Lumazine synthase; tran 34.9 31 0.0011 25.3 3.2 50 59-109 44-93 (158)
55 1kz1_A 6,7-dimethyl-8-ribityll 33.8 33 0.0011 25.2 3.2 50 58-108 51-100 (159)
56 1mkz_A Molybdenum cofactor bio 33.8 65 0.0022 23.2 4.9 77 24-106 12-91 (172)
57 2p5y_A UDP-glucose 4-epimerase 32.9 28 0.00097 26.6 2.9 19 76-94 57-75 (311)
58 3sxp_A ADP-L-glycero-D-mannohe 32.3 41 0.0014 26.4 3.8 23 24-52 10-32 (362)
59 3rsc_A CALG2; TDP, enediyne, s 31.4 11 0.00036 30.2 0.1 30 23-54 19-48 (415)
60 3hp4_A GDSL-esterase; psychrot 30.8 18 0.00062 25.2 1.3 36 74-109 55-91 (185)
61 2b99_A Riboflavin synthase; lu 28.8 1.3E+02 0.0044 21.9 5.7 62 26-95 6-67 (156)
62 1ejb_A Lumazine synthase; anal 28.7 52 0.0018 24.3 3.5 60 47-108 39-103 (168)
63 2v6g_A Progesterone 5-beta-red 28.6 80 0.0027 24.4 4.9 63 25-94 2-81 (364)
64 2pjk_A 178AA long hypothetical 28.3 55 0.0019 23.9 3.7 69 24-96 17-92 (178)
65 3kbq_A Protein TA0487; structu 27.9 83 0.0028 23.1 4.6 79 23-107 4-85 (172)
66 3dci_A Arylesterase; SGNH_hydr 27.5 56 0.0019 23.8 3.6 49 72-136 87-139 (232)
67 1y5e_A Molybdenum cofactor bio 26.3 1.1E+02 0.0037 21.9 4.9 76 24-105 15-93 (169)
68 3s1x_A Probable transaldolase; 25.2 29 0.001 26.8 1.7 15 32-46 19-33 (223)
69 1c2y_A Protein (lumazine synth 24.8 49 0.0017 24.2 2.7 50 59-109 46-95 (156)
70 1z45_A GAL10 bifunctional prot 24.5 46 0.0016 29.0 3.0 19 76-94 75-93 (699)
71 2bll_A Protein YFBG; decarboxy 24.5 48 0.0017 25.4 2.9 18 75-94 59-76 (345)
72 3tgh_A Glideosome-associated p 24.3 45 0.0015 27.0 2.7 25 72-96 21-45 (342)
73 1vk2_A Uracil-DNA glycosylase 23.1 60 0.0021 24.3 3.1 72 24-95 50-139 (204)
74 1uf3_A Hypothetical protein TT 22.7 51 0.0017 23.6 2.5 18 80-97 27-44 (228)
75 1xm7_A Hypothetical protein AQ 22.4 55 0.0019 23.5 2.7 23 73-95 29-53 (195)
76 3svt_A Short-chain type dehydr 22.1 61 0.0021 24.6 3.0 35 60-94 64-100 (281)
77 2fi0_A Conserved domain protei 22.1 74 0.0025 20.1 2.9 20 122-143 59-78 (81)
78 4f6l_B AUSA reductase domain p 22.0 1.2E+02 0.0041 25.1 5.0 23 23-51 149-171 (508)
79 3nrc_A Enoyl-[acyl-carrier-pro 21.3 83 0.0029 23.8 3.7 17 19-35 21-37 (280)
80 3skv_A SSFX3; jelly roll, GDSL 21.3 55 0.0019 26.9 2.7 35 75-109 234-269 (385)
81 1uuy_A CNX1, molybdopterin bio 20.8 1.4E+02 0.0048 21.2 4.6 81 24-104 7-91 (167)
82 3mil_A Isoamyl acetate-hydroly 20.6 70 0.0024 22.9 2.9 54 73-144 59-118 (240)
83 3llv_A Exopolyphosphatase-rela 20.1 16 0.00056 24.7 -0.7 24 24-54 6-29 (141)
No 1
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=100.00 E-value=4.7e-43 Score=280.34 Aligned_cols=131 Identities=27% Similarity=0.372 Sum_probs=124.5
Q ss_pred CCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCee
Q psy4808 22 TASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKI 101 (156)
Q Consensus 22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i 101 (156)
..+++|||||||||++++.||||+++++|++..+ .+++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|
T Consensus 21 ~~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~~i-~~~~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~aggr~~i 99 (228)
T 4hps_A 21 QSMKTILVTAFDPFGGEAINPSWEAIKPLQGSQV-FGANIEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQAGGRTNI 99 (228)
T ss_dssp CCCEEEEEEEECCCTTCSCCHHHHHHGGGTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSE
T ss_pred CCCCEEEEEeccCCCCCCCChHHHHHHHhcCcCC-CCcEEEEEEcceEeHHHHHHHHHHHHhhCCCEEEEeccCCCCceE
Confidence 3467999999999999999999999999999766 679999999999999999999999999999999999999999999
Q ss_pred eEeeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 102 TLECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 102 ~lE~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
+|||+|+| ++||++ ||+.|+|+||+++|+++|++. |+|+++|+|||+| |||.
T Consensus 100 ~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~a~~stLpvk~~v~~l~~~--Gipa~vS~dAGtY-vCN~ 167 (228)
T 4hps_A 100 TVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLPIKTMVNALNTA--GIPASVSQTAGTF-VCNH 167 (228)
T ss_dssp EEECEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEEEEeccCCCCCCCcCCCCCCCCcCcCCCCceeeeCCCHHHHHHHHHHc--CCcEEEeCCCCcc-hhHH
Confidence 99999999 789987 689999999999999999999 9999999999999 9994
No 2
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=100.00 E-value=3.8e-43 Score=279.07 Aligned_cols=129 Identities=28% Similarity=0.374 Sum_probs=122.8
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL 103 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l 103 (156)
+|||||||||||++++.||||+++++|++..+ .+++|++.+|||+|+.+.+.++++|++++||+|||+|+++++..|++
T Consensus 2 MktVLvTGF~PF~~~~~NPS~~~v~~L~~~~~-~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~vi~~G~a~gr~~i~~ 80 (216)
T 4gxh_A 2 MKTILVTAFDPFGGEAINPSWEAIKPLQGSQV-FGANIEICQIPCIFDTSLEHLYAAVDKYQPELVISVGQAGGRTNITV 80 (216)
T ss_dssp -CEEEEEEECCCTTSSSCHHHHHHGGGTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEE
T ss_pred CCEEEEeeccCCCCCCCChhHHHHHhhhcccC-CCceEEEEecCccHHHHHHHHHHHHHhhCCCEEEEeccCCCCCccee
Confidence 56899999999999999999999999998766 68999999999999999999999999999999999999999999999
Q ss_pred eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
|++|+| ++||++ ||+.|+|+||+++|++++++. |+|+.+|+|||+| |||.
T Consensus 81 Er~A~N~~~~r~pDn~G~~p~~~~i~~~gp~~~~t~Lpv~~iv~~l~~~--gipa~vS~dAG~y-lCN~ 146 (216)
T 4gxh_A 81 ERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSRLPIKTMVNALNTA--GIPASVSQTAGTF-VCNH 146 (216)
T ss_dssp ECEEESCBCCSSCCTTSCCCCSBCSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEEcccCcccCCccCCCCCCCCcccCCCchheecCCCHHHHHHHHHHC--CCCEEEeCCCccc-HHHH
Confidence 999999 789887 689999999999999999999 9999999999999 9994
No 3
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=100.00 E-value=6.2e-43 Score=278.91 Aligned_cols=129 Identities=31% Similarity=0.433 Sum_probs=121.5
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL 103 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l 103 (156)
+|+|||||||||++++.||||+++++|++. +++.++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|+|
T Consensus 2 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~aggr~~i~l 80 (223)
T 3ro0_A 2 EKKVLLTGFDPFGGETVNPSWEAVKRLNGA-AEGPASIVSEQVPTVFYKSLAVLREAMKKHQPDIIICVGQAGGRMQITP 80 (223)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHTTTC-EETTEEEEEEEECSCTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSBEE
T ss_pred CCEEEEEeCCCCCCCCCChHHHHHHHhccc-cCCCcEEEEEEeeeEehhHHHHHHHHHHHhCCCEEEEeccCCCCceEEE
Confidence 679999999999999999999999999997 4234599999999999999999999999999999999999999999999
Q ss_pred eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
||+|+| ++||++ ||..|+|+||+++|+++|++. |+|+++|+|||+| |||.
T Consensus 81 Er~A~N~~d~ripDn~G~~P~d~~i~~~Gp~a~~stLpv~~~v~~l~~~--gipa~vS~dAG~y-vCN~ 146 (223)
T 3ro0_A 81 ERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRIVEEIKKE--GIPAAVSYTAGTF-VCNH 146 (223)
T ss_dssp BSEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCBCCBSCCCSS-HHHH
T ss_pred EEEEecCCCCCCCCCCCCCCCCCCCcCCCCceeecCCCHHHHHHHHHHC--CCCEEEeCCCCcc-cchH
Confidence 999999 679887 689999999999999999999 9999999999999 9994
No 4
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=100.00 E-value=9.7e-43 Score=276.54 Aligned_cols=129 Identities=23% Similarity=0.412 Sum_probs=121.0
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeE
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITL 103 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~l 103 (156)
+++|||||||||++++.||||+++++|++. +++.++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|+|
T Consensus 1 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~~i~~~~lPv~y~~~~~~l~~~~~~~~Pd~VihvG~aggr~~i~l 79 (215)
T 3lac_A 1 MKTVLLTGFDPFGGESINPAWEVAKSLHEK-TIGEYKIISKQVPTVFHKSISVLKEYIEELAPEFIICIGQAGGRPDITI 79 (215)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHTTTTC-EETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEE
T ss_pred CCEEEEEecCCCCCCCCChHHHHHHHhccc-cCCCcEEEEEEEeeEhHHHHHHHHHHHHhhCCCeEEEeccCCCCceEEE
Confidence 468999999999999999999999999994 4234599999999999999999999999999999999999999999999
Q ss_pred eeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 104 ECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 104 E~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
||+|+| ++||++ ||+.|+|+||+++|++++++. |+++++|+|||+| |||.
T Consensus 80 Er~A~N~~d~~~pDn~G~~P~~~~i~~~Gp~~~~s~Lpv~~~v~~l~~~--gipa~vS~dAG~y-vCN~ 145 (215)
T 3lac_A 80 ERVAINIDDARIADNEGNQPVDVPVVEEGPAAYWSTLPMKAIVKKLQEE--GIPASVSQTAGTF-VCNH 145 (215)
T ss_dssp ECEEESCBCCSSCCTTSCCCSSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEEeccCCCcCCCcCCCCCCCCcCcCCCCceeecCCCHHHHHHHHHhC--CCcEEEcCCCCcc-ccHH
Confidence 999999 678887 689999999999999999999 9999999999999 9994
No 5
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=100.00 E-value=6.3e-43 Score=277.62 Aligned_cols=129 Identities=27% Similarity=0.409 Sum_probs=122.1
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeee
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKIT 102 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~ 102 (156)
+.|+|||||||||++++.||||+++++|++. + .+++|++++|||+|.++.+.++++|++++||+|||+|++++++.|+
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i-~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~a~gr~~i~ 79 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLEDI-I-GTHTIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAGGRNAIT 79 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCSE-E-TTEEEEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECTTCCSBE
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhccc-c-CCcEEEEEEeceehHhHHHHHHHHHHHhCCCEEEEeccCCCCceEE
Confidence 3679999999999999999999999999997 4 7899999999999999999999999999999999999999999999
Q ss_pred Eeeeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 103 LECKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 103 lE~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
+||+|+| ++||++ ||+.|+|+||+++|+++|++. |+|+++|+|||+| |||+
T Consensus 80 lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~stLpv~~iv~~l~~~--gipa~vS~dAG~y-vCN~ 146 (215)
T 3giu_A 80 PERVAINIDDARIPDNDDFQPIDQAIHLDGAPAYFSNLPVKAMTQSIINQ--GLPGALSNSAGTF-VCNH 146 (215)
T ss_dssp EBCEEESCEECSSCCTTSCCCEEECSCTTSCSEEECCSCHHHHHHHHHHT--TCCBCCBSCCCSS-HHHH
T ss_pred EEEEEeccCCCCCCCCCCCCCCCCcccCCCccccccCCCHHHHHHHHHHc--CCCEEEeCCCCcc-ccHH
Confidence 9999999 679987 689999999999999999999 9999999999999 9994
No 6
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=100.00 E-value=2.2e-42 Score=273.23 Aligned_cols=128 Identities=20% Similarity=0.316 Sum_probs=122.4
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||+++++|++..+ .+++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|++|
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~-~~~~i~~~~lPv~~~~~~~~l~~~~~~~~pd~vi~vG~a~gr~~i~iE 79 (208)
T 1x10_A 1 MKVLVTGFEPFGGEKINPTERIAKDLDGIKI-GDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAPGRSAISIE 79 (208)
T ss_dssp CEEEEEEECCCTTCSCCHHHHHHHHHTTCEE-TTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECTTCCSEEEE
T ss_pred CEEEEEeecCCCCCCCChHHHHHHHhhccCC-CCeEEEEEEEeeEHHHHHHHHHHHHHHhCCCEEEEecCCCCCceEEeE
Confidence 4699999999999999999999999999866 789999999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| ++||++ ||+.|+|+||+++|++++++. |+++.+|+|||+| |||.
T Consensus 80 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttlpi~~iv~~l~~~--gi~~~vS~~AG~y-lCN~ 144 (208)
T 1x10_A 80 RIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKIMKKLHER--GIPAYISNSAGLY-LSNY 144 (208)
T ss_dssp CEEESCBCCSSCCTTSCCCCSBCSSTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEEcCCCcccCCCCCCCCCCCceeCCCCceeEcCCCHHHHHHHHHhC--CCCEEEecCCCcc-hhhH
Confidence 99999 679987 688999999999999999999 9999999999999 9994
No 7
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=100.00 E-value=2.4e-42 Score=275.06 Aligned_cols=128 Identities=23% Similarity=0.351 Sum_probs=122.6
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||+++++|++..+ .+++|++.+|||+|..+.+.++++|++++||+|||+|++++++.|++|
T Consensus 2 k~VLvTGF~PF~~~~~NPS~~~v~~L~~~~~-~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~aggr~~i~lE 80 (220)
T 1a2z_A 2 KKVLITGFEPFGGDSKNPTEQIAKYFDRKQI-GNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAPTYSNITVE 80 (220)
T ss_dssp EEEEEEEECCCTTCSCCHHHHHHHHHTTCEE-TTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE
T ss_pred CEEEEeeccCCCCCCCCcHHHHHHHhhcccC-CCeEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEecCCCCCceEEEE
Confidence 5799999999999999999999999999866 789999999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
|+|+| ++||++ ||+.|+|+||+++|++++++. |+++.+|+|||+| |||.
T Consensus 81 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~ttLpi~~iv~~l~~~--gip~~vS~~AG~y-lCN~ 145 (220)
T 1a2z_A 81 RIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAITKTLRDN--GIPATISYSAGTY-LCNY 145 (220)
T ss_dssp CEEESCBCCSSCCTTSCCCSSBCSCTTSCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEccCCCCCcCCCCCCCCCCCCccCCCCceeEcCCCHHHHHHHHHHC--CCCEEEeCCCCcc-hhhH
Confidence 99999 679987 688999999999999999999 9999999999999 9994
No 8
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=100.00 E-value=1.5e-41 Score=268.17 Aligned_cols=125 Identities=26% Similarity=0.426 Sum_probs=119.2
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEe
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLE 104 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE 104 (156)
|+|||||||||++++.||||+++++|++. + ++|++.+|||+|.++.+.++++|++++||+|||+|++++++.|++|
T Consensus 1 m~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i---~~i~~~~lPv~~~~~~~~l~~~~~~~~Pd~vi~vG~a~gr~~i~~E 76 (206)
T 1iu8_A 1 MKILLTGFEPFGGDDKNPTMDIVEALSER-I---PEVVGEILPVSFKRAREKLLKVLDDVRPDITINLGLAPGRTHISVE 76 (206)
T ss_dssp CCEEEEEECCCTTCSCCHHHHHHHHHHHH-C---TTEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECTTCSSEEEE
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHHhccc-e---eEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEcccCCCCceEEEE
Confidence 46999999999999999999999999987 3 7789999999999999999999999999999999999999999999
Q ss_pred eeecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 105 CKAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 105 ~~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
++|+| ++||++ ||..|+|+||+++|++++++. |+++.+|+|||+| |||.
T Consensus 77 r~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~Lpi~~iv~~l~~~--gip~~vS~~AG~y-lCN~ 141 (206)
T 1iu8_A 77 RVAVNMIDARIPDNDGEQPKDEPIVEGGPAAYFATIPTREIVEEMKKN--GIPAVLSYTAGTY-LCNF 141 (206)
T ss_dssp CEEESCEECSSCCTTSCCCEEECSSTTCCSEEECCSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEecCCCCccCCCCCCCCCCCceeCCCCceeEcCCCHHHHHHHHHhC--CCCEEEeCCCCcc-HhhH
Confidence 99999 689987 688999999999999999999 9999999999999 9994
No 9
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=4.2e-41 Score=263.08 Aligned_cols=125 Identities=21% Similarity=0.303 Sum_probs=119.9
Q ss_pred EEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEee
Q psy4808 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLEC 105 (156)
Q Consensus 26 ~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~ 105 (156)
+|||||||||++++.||||+++++|++. + .+++|++.+|||+ +.+.+.++++|++++||+|||+|++++++.|++|+
T Consensus 1 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i-~~~~i~~~~lPv~-~~~~~~l~~~~~~~~pd~vi~~G~a~~r~~i~~Er 77 (192)
T 2ebj_A 1 MILVTGFEPFGSLEHNPSQALLDLLPSE-V-DGKPLRKAVLPVD-AEALGEALEDLHREGPKAVLHLGLAEDRPVLTLER 77 (192)
T ss_dssp CEEEEEECCCTTCSCCHHHHGGGGSCSE-E-TTEEEEEEEECSC-HHHHHHHHHHHHTTCCSEEEEEEECTTCSSEEEEC
T ss_pred CEEEEeecCCCCCCCChHHHHHHHhhcc-c-CCcEEEEEEeccc-ccHHHHHHHHHHHhCCCEEEEeccCCCCceEEeEE
Confidence 5999999999999999999999999998 5 7899999999999 99999999999999999999999999999999999
Q ss_pred eecc----ccCCCC------------CCceEEecCCHHHHHHHHHhhcCCCceEEcCCCCcccccCC
Q psy4808 106 KAAE----LCQCTD------------SIDVIKTALDVESLVKEFQTNKANINQVLDIDISRVDVCNR 156 (156)
Q Consensus 106 ~A~N----~~Pd~~------------gp~~~~T~l~~~~l~~~l~~~~~g~~v~~S~dAG~yllCN~ 156 (156)
+|+| ++||++ ||..|+|+||+++|++++++. |+++.+|+|||+| |||.
T Consensus 78 ~A~N~~~~~~pDn~G~~p~~~~i~~~gp~~~~t~lp~~~iv~~l~~~--g~p~~vS~~AG~y-lCN~ 141 (192)
T 2ebj_A 78 LAVNLLDFPRPDNRGRVLEDLPIVPGGPLALPARFPVKPVLARWREA--GIPGRPSLSAGSY-LCNQ 141 (192)
T ss_dssp EEESCBCCSSCCTTCCCCCSBCSSTTSCSEEECBSCHHHHHHHHHHT--TCCEEEESCCCSS-HHHH
T ss_pred EEEcCCCccCCCCCCCCCCCCceeCCCCceeEcCCCHHHHHHHHHHC--CCCEEEeCCCCcc-HHHH
Confidence 9999 679987 688999999999999999999 9999999999999 9994
No 10
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=84.43 E-value=0.47 Score=38.63 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=21.9
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
|+++|+|+|-|. +|| .+|.-.++++|.+..
T Consensus 1 M~~~i~i~~GGT-gGH-i~palala~~L~~~g 30 (365)
T 3s2u_A 1 MKGNVLIMAGGT-GGH-VFPALACAREFQARG 30 (365)
T ss_dssp --CEEEEECCSS-HHH-HHHHHHHHHHHHHTT
T ss_pred CCCcEEEEcCCC-HHH-HHHHHHHHHHHHhCC
Confidence 567899999875 343 589999999997653
No 11
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=75.03 E-value=1.7 Score=33.28 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=38.3
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE-EeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE-QIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~-~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
|+|+|+|||=.-|-| ..+++.|.+.. ++|... ..+.+.... +.+.++++..++|+|||+.-.
T Consensus 4 M~m~ilVtGatG~iG------~~l~~~L~~~g----~~V~~~~r~~~D~~d~-~~~~~~~~~~~~d~vi~~a~~ 66 (287)
T 3sc6_A 4 MKERVIITGANGQLG------KQLQEELNPEE----YDIYPFDKKLLDITNI-SQVQQVVQEIRPHIIIHCAAY 66 (287)
T ss_dssp -CEEEEEESTTSHHH------HHHHHHSCTTT----EEEEEECTTTSCTTCH-HHHHHHHHHHCCSEEEECCCC
T ss_pred ceeEEEEECCCCHHH------HHHHHHHHhCC----CEEEEecccccCCCCH-HHHHHHHHhcCCCEEEECCcc
Confidence 345899999766644 46788887643 343332 133333332 445666676689999998653
No 12
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=73.01 E-value=2.3 Score=32.47 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=37.8
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEE-EEeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVK-EQIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~-~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
++|+|+|||=.-|-| ..+++.|.+........... ..+..+... .+.+.++++..++|+|||+.-.
T Consensus 5 ~~~~vlVtGatG~iG------~~l~~~L~~~g~~~~~~~~~~~~~~~D~~d-~~~~~~~~~~~~~d~Vih~A~~ 71 (319)
T 4b8w_A 5 QSMRILVTGGSGLVG------KAIQKVVADGAGLPGEDWVFVSSKDADLTD-TAQTRALFEKVQPTHVIHLAAM 71 (319)
T ss_dssp CCCEEEEETCSSHHH------HHHHHHHHTTTCCTTCEEEECCTTTCCTTS-HHHHHHHHHHSCCSEEEECCCC
T ss_pred cCCeEEEECCCcHHH------HHHHHHHHhcCCcccccccccCceecccCC-HHHHHHHHhhcCCCEEEECcee
Confidence 467899999877644 35666665543201111111 112333332 2456677777789999999764
No 13
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=69.70 E-value=4.8 Score=32.15 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=22.1
Q ss_pred CCceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 22 TASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
...|+|++++.+ +.| ..+|...++++|.+.+
T Consensus 18 ~~~MrIl~~~~~-~~G-h~~~~~~la~~L~~~G 48 (412)
T 3otg_A 18 GRHMRVLFASLG-THG-HTYPLLPLATAARAAG 48 (412)
T ss_dssp CCSCEEEEECCS-SHH-HHGGGHHHHHHHHHTT
T ss_pred cceeEEEEEcCC-Ccc-cHHHHHHHHHHHHHCC
Confidence 346789888855 333 3678889999998764
No 14
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=68.76 E-value=4.2 Score=32.42 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=10.5
Q ss_pred CCcccccccCCCCCceEEEEEeecCCCC
Q psy4808 10 DTRGETSNALDVTASFKVLITGFGPFKT 37 (156)
Q Consensus 10 ~~r~~~~~~~~~~~~~~VliTGFgpF~~ 37 (156)
++.|.-+..+.-.|+++|+|||=.-|-|
T Consensus 10 ~~~~~~~~~~~~~M~~~vlVtGatG~iG 37 (375)
T 1t2a_A 10 HSSGRENKYFQGHMRNVALITGITGQDG 37 (375)
T ss_dssp --------------CCEEEEETTTSHHH
T ss_pred ccccccchhhHhhcCcEEEEECCCchHH
Confidence 3445555555555557899999766633
No 15
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=68.24 E-value=6.4 Score=29.05 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred ceEEEEEeecCCCCCCCCchHH-HHHhCC---CCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CC
Q psy4808 24 SFKVLITGFGPFKTHTINPSWE-AVSLLP---DRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MA 98 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~-vv~~L~---~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~ 98 (156)
+.-|+.||=+...+...|.+.. +...|. +. ++++....+|=+.+...+.+.+.+++.+.|+||..|=.+ +.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~----G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIIT----PFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCS----CCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhC----CCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 4468999999887776666544 444343 33 344444577777888888888877644689999998654 33
Q ss_pred CeeeEee
Q psy4808 99 DKITLEC 105 (156)
Q Consensus 99 ~~i~lE~ 105 (156)
+-++.|.
T Consensus 83 ~D~t~ea 89 (178)
T 2pbq_A 83 RDVTPEA 89 (178)
T ss_dssp TCCHHHH
T ss_pred CCchHHH
Confidence 3344443
No 16
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=66.30 E-value=2.3 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=36.2
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEE--eeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQ--IQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~--LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
.|+|+|||=.-|-| ..+++.|.... .++.... ...+... .+.+.+++++.++|+|||+.-.
T Consensus 3 ~~~ilVtGatG~iG------~~l~~~L~~~g----~~v~~~~r~~~~D~~d-~~~~~~~~~~~~~d~vih~a~~ 65 (321)
T 1e6u_A 3 KQRVFIAGHRGMVG------SAIRRQLEQRG----DVELVLRTRDELNLLD-SRAVHDFFASERIDQVYLAAAK 65 (321)
T ss_dssp CEEEEEETTTSHHH------HHHHHHHTTCT----TEEEECCCTTTCCTTC-HHHHHHHHHHHCCSEEEECCCC
T ss_pred CCEEEEECCCcHHH------HHHHHHHHhCC----CeEEEEecCccCCccC-HHHHHHHHHhcCCCEEEEcCee
Confidence 47899999766644 45777776543 2322211 1122222 2345666666689999999753
No 17
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=64.70 E-value=12 Score=27.97 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=49.7
Q ss_pred cccCCCCCceEEEEEeecCCCCCCCCchHH-HHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEc
Q psy4808 16 SNALDVTASFKVLITGFGPFKTHTINPSWE-AVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVG 93 (156)
Q Consensus 16 ~~~~~~~~~~~VliTGFgpF~~~~~NpS~~-vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~G 93 (156)
........+.-|+.||=+-+.+...|.+.. +...|.+... -++++ ....+|=+.+...+.+.+++++.+.|+||..|
T Consensus 8 ~v~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~-~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 8 LTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSL-LGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp -----CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTT-TCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cccccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhc-CCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 333333345568999988776666666644 4555544211 13444 44578888888888888877644689999998
Q ss_pred ccC
Q psy4808 94 VSD 96 (156)
Q Consensus 94 v~~ 96 (156)
=.+
T Consensus 87 Gtg 89 (189)
T 1jlj_A 87 GTG 89 (189)
T ss_dssp CCS
T ss_pred CCC
Confidence 755
No 18
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=61.73 E-value=6.9 Score=30.39 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=14.7
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.++++..++|+|||+.-
T Consensus 76 ~~~~~~~~~~~~d~Vih~A~ 95 (335)
T 1rpn_A 76 CSVQRAVIKAQPQEVYNLAA 95 (335)
T ss_dssp HHHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHHHcCCCEEEECcc
Confidence 34556666668999999965
No 19
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=61.69 E-value=3.7 Score=32.50 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=19.6
Q ss_pred eeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 66 IQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 66 LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
+..++.. .+.+.++++++++|+|||+.-.
T Consensus 65 ~~~Dl~d-~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 65 VYGLINE-QEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp EECCTTC-HHHHHHHHHHTTCCEEEECCCG
T ss_pred EEeecCC-HHHHHHHHhhCCCCEEEECCch
Confidence 3445544 3456667777789999998753
No 20
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=60.25 E-value=5.2 Score=31.35 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=15.6
Q ss_pred hHHHHHHHHhCCCEEEEEccc
Q psy4808 75 VTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv~ 95 (156)
+.+.++++..++|+|||+.-.
T Consensus 88 ~~~~~~~~~~~~d~Vih~A~~ 108 (346)
T 4egb_A 88 ELLEHVIKERDVQVIVNFAAE 108 (346)
T ss_dssp HHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHhhcCCCEEEECCcc
Confidence 445666676789999999754
No 21
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=59.81 E-value=13 Score=26.88 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=51.0
Q ss_pred ceEEEEEeecCCCCCCCCchH-HHHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CCCe
Q psy4808 24 SFKVLITGFGPFKTHTINPSW-EAVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MADK 100 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~-~vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~~~ 100 (156)
+.-|+.||=+-..+...|.+. .+...|.+. ++++ ....+|=+.+...+.+.+.+++.+.|+||..|=.+ +.+-
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~----G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D 78 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGG----PFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRD 78 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTS----SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHC----CCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence 345889998877666555554 455555543 3454 34567878888888888877644679999998755 3333
Q ss_pred eeEeee
Q psy4808 101 ITLECK 106 (156)
Q Consensus 101 i~lE~~ 106 (156)
++.|..
T Consensus 79 ~t~ea~ 84 (164)
T 2is8_A 79 RTPEAT 84 (164)
T ss_dssp CHHHHH
T ss_pred ChHHHH
Confidence 544433
No 22
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=59.13 E-value=5.7 Score=30.73 Aligned_cols=62 Identities=19% Similarity=0.151 Sum_probs=33.6
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEE-----------EEEeeeecchhhhHHHHHHHHhCCCEEEE
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIV-----------KEQIQVSYNYVDVTVPALWKKYNPDLVIH 91 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~-----------~~~LpVsy~~v~~~l~~l~~~~~pd~vih 91 (156)
|+|+|+|||=.-|-| ..+++.|.+... .+.+. ...+..++. .+.+.++++ ++|+|||
T Consensus 1 M~~~vlVtGatG~iG------~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~Dl~--~~~~~~~~~--~~d~Vih 68 (311)
T 3m2p_A 1 MSLKIAVTGGTGFLG------QYVVESIKNDGN--TPIILTRSIGNKAINDYEYRVSDYT--LEDLINQLN--DVDAVVH 68 (311)
T ss_dssp -CCEEEEETTTSHHH------HHHHHHHHHTTC--EEEEEESCCC-----CCEEEECCCC--HHHHHHHTT--TCSEEEE
T ss_pred CCCEEEEECCCcHHH------HHHHHHHHhCCC--EEEEEeCCCCcccCCceEEEEcccc--HHHHHHhhc--CCCEEEE
Confidence 357899999776644 345666654331 11111 011233333 344555554 7899999
Q ss_pred EcccC
Q psy4808 92 VGVSD 96 (156)
Q Consensus 92 ~Gv~~ 96 (156)
+.-..
T Consensus 69 ~a~~~ 73 (311)
T 3m2p_A 69 LAATR 73 (311)
T ss_dssp CCCCC
T ss_pred ccccC
Confidence 87644
No 23
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=57.77 E-value=12 Score=29.25 Aligned_cols=64 Identities=16% Similarity=0.197 Sum_probs=34.9
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEE----------------EEeeeecchhhhHHHHHHHHhCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVK----------------EQIQVSYNYVDVTVPALWKKYNP 86 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~----------------~~LpVsy~~v~~~l~~l~~~~~p 86 (156)
..|+|+|||=.-|=| ..+++.|.+... .+.+.. ..+..+... .+.+.+++++.++
T Consensus 19 ~~~~vlVTGasG~iG------~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d-~~~~~~~~~~~~~ 89 (330)
T 2pzm_A 19 SHMRILITGGAGCLG------SNLIEHWLPQGH--EILVIDNFATGKREVLPPVAGLSVIEGSVTD-AGLLERAFDSFKP 89 (330)
T ss_dssp TCCEEEEETTTSHHH------HHHHHHHGGGTC--EEEEEECCSSSCGGGSCSCTTEEEEECCTTC-HHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCHHH------HHHHHHHHHCCC--EEEEEECCCccchhhhhccCCceEEEeeCCC-HHHHHHHHhhcCC
Confidence 367899999876644 456666654331 111100 112222222 1335566665589
Q ss_pred CEEEEEccc
Q psy4808 87 DLVIHVGVS 95 (156)
Q Consensus 87 d~vih~Gv~ 95 (156)
|+|||+.-.
T Consensus 90 D~vih~A~~ 98 (330)
T 2pzm_A 90 THVVHSAAA 98 (330)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999998653
No 24
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=57.69 E-value=8.3 Score=30.55 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=23.3
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
+.||||++.|+-. | -.||.-.++++|...+
T Consensus 21 ~~MRIL~~~~p~~-G-Hv~P~l~LA~~L~~rG 50 (400)
T 4amg_A 21 QSMRALFITSPGL-S-HILPTVPLAQALRALG 50 (400)
T ss_dssp CCCEEEEECCSSH-H-HHGGGHHHHHHHHHTT
T ss_pred CCCeEEEECCCch-h-HHHHHHHHHHHHHHCC
Confidence 3679999877643 3 4799999999998765
No 25
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=56.94 E-value=13 Score=26.99 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=49.5
Q ss_pred ceEEEEEeecCCCCCCCCchHH-HHHh----CCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-
Q psy4808 24 SFKVLITGFGPFKTHTINPSWE-AVSL----LPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD- 96 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~-vv~~----L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~- 96 (156)
+.-|+.||=+...+...|.+.. +.+. |.+. ++++ ....+|=+.+...+.+.+++++ +.|+||..|=.+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~----G~~v~~~~iv~Dd~~~I~~~l~~a~~~-~~DlVittGG~g~ 81 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDY----SYELISEVVVPEGYDTVVEAIATALKQ-GARFIITAGGTGI 81 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----C----EEEEEEEEEECSSHHHHHHHHHHHHHT-TCSEEEEESCCSS
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHC----CCEEeEEEEeCCCHHHHHHHHHHHHhC-CCCEEEECCCCCC
Confidence 4458999988887766665544 4455 4432 4454 3457787888888888877764 479999998755
Q ss_pred CCCeeeEeee
Q psy4808 97 MADKITLECK 106 (156)
Q Consensus 97 ~~~~i~lE~~ 106 (156)
+.+-++.|..
T Consensus 82 ~~~D~t~ea~ 91 (167)
T 2g2c_A 82 RAKNQTPEAT 91 (167)
T ss_dssp STTCCHHHHH
T ss_pred CCCcChHHHH
Confidence 3334554443
No 26
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=55.37 E-value=11 Score=30.07 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=21.7
Q ss_pred cccccCCCCCceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 14 ETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 14 ~~~~~~~~~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
.++...|.. .|+|+++.++ +.+ -.||.-.++++|...+
T Consensus 11 ~~~~~~~~~-~MrIl~~~~~-~~G-hv~~~~~La~~L~~~G 48 (398)
T 3oti_A 11 HSSGHIEGR-HMRVLFVSSP-GIG-HLFPLIQLAWGFRTAG 48 (398)
T ss_dssp --------C-CCEEEEECCS-SHH-HHGGGHHHHHHHHHTT
T ss_pred ccccchhhh-cCEEEEEcCC-Ccc-hHhHHHHHHHHHHHCC
Confidence 344445533 4688888775 433 3688999999998764
No 27
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A
Probab=54.94 E-value=6.3 Score=30.40 Aligned_cols=63 Identities=14% Similarity=0.094 Sum_probs=30.8
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE------EeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE------QIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~------~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
.|+|+|||=.-|-| ..+++.|..... .+.+..+ .+..+.... +.+.++++..++|+|||+.-.
T Consensus 2 ~~~vlVtGatG~iG------~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~Dl~d~-~~~~~~~~~~~~d~vih~A~~ 70 (315)
T 2ydy_A 2 NRRVLVTGATGLLG------RAVHKEFQQNNW--HAVGCGFRRARPKFEQVNLLDS-NAVHHIIHDFQPHVIVHCAAE 70 (315)
T ss_dssp CCEEEEETTTSHHH------HHHHHHHHTTTC--EEEEEC-------------------CHHHHHHHCCSEEEECC--
T ss_pred CCeEEEECCCcHHH------HHHHHHHHhCCC--eEEEEccCCCCCCeEEecCCCH-HHHHHHHHhhCCCEEEECCcc
Confidence 46899999866644 456777765431 2211110 111222221 234455555579999998653
No 28
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=54.05 E-value=15 Score=27.46 Aligned_cols=76 Identities=14% Similarity=0.042 Sum_probs=48.5
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CCCee
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MADKI 101 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~~~i 101 (156)
+.-|+.||=+-..+. .|.+...+.++-... ++++ ....+|=+.+...+.+.+.++ .+.|+||..|=.+ +.+-+
T Consensus 32 rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~---G~~v~~~~iv~Dd~~~I~~al~~a~~-~~~DlVIttGGts~g~~D~ 106 (185)
T 3rfq_A 32 RALVVVVDDRTAHGD-EDHSGPLVTELLTEA---GFVVDGVVAVEADEVDIRNALNTAVI-GGVDLVVSVGGTGVTPRDV 106 (185)
T ss_dssp EEEEEEECHHHHTTC-CCSHHHHHHHHHHHT---TEEEEEEEEECSCHHHHHHHHHHHHH-TTCSEEEEESCCSSSTTCC
T ss_pred EEEEEEECcccCCCC-cCcHHHHHHHHHHHC---CCEEEEEEEeCCCHHHHHHHHHHHHh-CCCCEEEECCCCCCCCccc
Confidence 446789998876666 666655554443332 3454 345688888888888877764 3679999998655 33334
Q ss_pred eEe
Q psy4808 102 TLE 104 (156)
Q Consensus 102 ~lE 104 (156)
+.|
T Consensus 107 t~e 109 (185)
T 3rfq_A 107 TPE 109 (185)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 29
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2
Probab=53.86 E-value=11 Score=28.54 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=36.8
Q ss_pred CCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEe-eeecchhhhHHHHHHHHhCCCEEEEEcc
Q psy4808 22 TASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQI-QVSYNYVDVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~L-pVsy~~v~~~l~~l~~~~~pd~vih~Gv 94 (156)
+..++|+|||=.-|-| ..+++.|.... .+|....- +.+.... +.+.++++..++|+|||+.-
T Consensus 10 ~~~~~vlVtGatG~iG------~~l~~~L~~~g----~~V~~~~r~~~Dl~d~-~~~~~~~~~~~~d~vih~A~ 72 (292)
T 1vl0_A 10 HHHMKILITGANGQLG------REIQKQLKGKN----VEVIPTDVQDLDITNV-LAVNKFFNEKKPNVVINCAA 72 (292)
T ss_dssp --CEEEEEESTTSHHH------HHHHHHHTTSS----EEEEEECTTTCCTTCH-HHHHHHHHHHCCSEEEECCC
T ss_pred cccceEEEECCCChHH------HHHHHHHHhCC----CeEEeccCccCCCCCH-HHHHHHHHhcCCCEEEECCc
Confidence 3477999999877744 45777776543 34332211 2233222 34556666558999999865
No 30
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=52.40 E-value=28 Score=26.05 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=48.3
Q ss_pred ceEEEEEeecCCCCCCCCchHH-HHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CCCee
Q psy4808 24 SFKVLITGFGPFKTHTINPSWE-AVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MADKI 101 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~-vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~~~i 101 (156)
+.-|+.||=+-..+...|.+.. +.+.|.+.+. ..+.+....+|=+.+...+.+.+++++.+.|+||..|=.+ +.+-+
T Consensus 5 rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~-~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~ 83 (195)
T 1di6_A 5 RIGLVSISDRASSGVYQDKGIPALEEWLTSALT-TPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDV 83 (195)
T ss_dssp EEEEEEEECC-------CCHHHHHHHHHHHHBC-SCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred EEEEEEECCCCCCCeEEchHHHHHHHHHHHcCC-CCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcc
Confidence 4468889988887766666544 5555555432 1112455678888888888888887755689999998765 33335
Q ss_pred eEeee
Q psy4808 102 TLECK 106 (156)
Q Consensus 102 ~lE~~ 106 (156)
+.|..
T Consensus 84 T~ea~ 88 (195)
T 1di6_A 84 TPDAT 88 (195)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 31
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=51.61 E-value=10 Score=29.61 Aligned_cols=73 Identities=22% Similarity=0.142 Sum_probs=33.9
Q ss_pred cccccCCCCCceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEE----------------EEEeeeecchhhhHH
Q psy4808 14 ETSNALDVTASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIV----------------KEQIQVSYNYVDVTV 77 (156)
Q Consensus 14 ~~~~~~~~~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~----------------~~~LpVsy~~v~~~l 77 (156)
+.+..+...++|+|+|||=.-|-| ..+++.|..... .+.+. ...+..+.... +.+
T Consensus 11 ~~~~~~~~~~~~~vlVTGatG~iG------~~l~~~L~~~g~--~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~-~~~ 81 (333)
T 2q1w_A 11 SSGLVPRGSHMKKVFITGICGQIG------SHIAELLLERGD--KVVGIDNFATGRREHLKDHPNLTFVEGSIADH-ALV 81 (333)
T ss_dssp ----------CCEEEEETTTSHHH------HHHHHHHHHTTC--EEEEEECCSSCCGGGSCCCTTEEEEECCTTCH-HHH
T ss_pred cCceeeecCCCCEEEEeCCccHHH------HHHHHHHHHCCC--EEEEEECCCccchhhHhhcCCceEEEEeCCCH-HHH
Confidence 334444444567999999766633 345555543321 11100 11122333322 345
Q ss_pred HHHHHHhCCCEEEEEccc
Q psy4808 78 PALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 78 ~~l~~~~~pd~vih~Gv~ 95 (156)
.++++..++|+|||+.-.
T Consensus 82 ~~~~~~~~~D~vih~A~~ 99 (333)
T 2q1w_A 82 NQLIGDLQPDAVVHTAAS 99 (333)
T ss_dssp HHHHHHHCCSEEEECCCC
T ss_pred HHHHhccCCcEEEECcee
Confidence 566666679999998653
No 32
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Probab=51.35 E-value=10 Score=30.17 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.++++..++|+|||+.-
T Consensus 97 ~~~~~~~~~~~d~Vih~A~ 115 (381)
T 1n7h_A 97 SLRRWIDVIKPDEVYNLAA 115 (381)
T ss_dssp HHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHhcCCCEEEECCc
Confidence 4556666668999999865
No 33
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Probab=50.88 E-value=14 Score=28.47 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=34.9
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEE----------EEeeeecchhhhHHHHHHHHhCCCEEEEE
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVK----------EQIQVSYNYVDVTVPALWKKYNPDLVIHV 92 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~----------~~LpVsy~~v~~~l~~l~~~~~pd~vih~ 92 (156)
+.++|+|||=.-|=| ..+++.|.+... .+.+.. ..+..+... .+.+.++++..++|+|||+
T Consensus 11 ~~~~vlVTGatG~iG------~~l~~~L~~~G~--~V~~~~r~~~~~~l~~~~~~~Dl~d-~~~~~~~~~~~~~d~vih~ 81 (321)
T 2pk3_A 11 GSMRALITGVAGFVG------KYLANHLTEQNV--EVFGTSRNNEAKLPNVEMISLDIMD-SQRVKKVISDIKPDYIFHL 81 (321)
T ss_dssp --CEEEEETTTSHHH------HHHHHHHHHTTC--EEEEEESCTTCCCTTEEEEECCTTC-HHHHHHHHHHHCCSEEEEC
T ss_pred CcceEEEECCCChHH------HHHHHHHHHCCC--EEEEEecCCccccceeeEEECCCCC-HHHHHHHHHhcCCCEEEEc
Confidence 478999999877744 356666654331 111110 112223322 2345566666679999998
Q ss_pred ccc
Q psy4808 93 GVS 95 (156)
Q Consensus 93 Gv~ 95 (156)
.-.
T Consensus 82 A~~ 84 (321)
T 2pk3_A 82 AAK 84 (321)
T ss_dssp CSC
T ss_pred Ccc
Confidence 653
No 34
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=50.18 E-value=6.3 Score=30.21 Aligned_cols=20 Identities=5% Similarity=-0.077 Sum_probs=14.8
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.+++++.++|+|||+.-
T Consensus 58 ~~~~~~~~~~~~d~vih~a~ 77 (312)
T 2yy7_A 58 NQIEHLVEVHKITDIYLMAA 77 (312)
T ss_dssp HHHHHHHHHTTCCEEEECCC
T ss_pred HHHHHHHhhcCCCEEEECCc
Confidence 34566666668999999964
No 35
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*
Probab=47.80 E-value=13 Score=28.99 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.++++..++|+|||+.-
T Consensus 72 ~~~~~~~~~~~d~vih~A~ 90 (348)
T 1ek6_A 72 ALQRLFKKYSFMAVIHFAG 90 (348)
T ss_dssp HHHHHHHHCCEEEEEECCS
T ss_pred HHHHHHHhcCCCEEEECCC
Confidence 4555666557899999864
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=46.53 E-value=18 Score=28.73 Aligned_cols=29 Identities=10% Similarity=-0.039 Sum_probs=21.2
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
+|+|+++.++ +.+ ..||...++++|...+
T Consensus 15 ~MrIl~~~~~-~~g-h~~~~~~La~~L~~~G 43 (398)
T 4fzr_A 15 HMRILVIAGC-SEG-FVMPLVPLSWALRAAG 43 (398)
T ss_dssp CCEEEEECCS-SHH-HHGGGHHHHHHHHHTT
T ss_pred ceEEEEEcCC-Ccc-hHHHHHHHHHHHHHCC
Confidence 5688887665 333 2688899999998765
No 37
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=45.04 E-value=15 Score=28.44 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.++++..++|+|||+.-
T Consensus 64 ~~~~~~~~~~~d~vih~A~ 82 (347)
T 1orr_A 64 DVTRLITKYMPDSCFHLAG 82 (347)
T ss_dssp HHHHHHHHHCCSEEEECCC
T ss_pred HHHHHHhccCCCEEEECCc
Confidence 4555666567999999875
No 38
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=44.65 E-value=22 Score=24.97 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 74 DVTVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
...+.+.+...+||+ +|++|..........|+...|
T Consensus 51 ~~~~~~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~ 87 (190)
T 1ivn_A 51 LARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQT 87 (190)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeeccccccCCCHHHHHHH
Confidence 345555666678996 678998776555555554444
No 39
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=41.99 E-value=26 Score=25.62 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=31.5
Q ss_pred HHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 47 VSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 47 v~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
.+.|..... ...+|....+|=+|+ ..-.+.++.+..++|.||.+|.-
T Consensus 35 ~~~l~~~gv-~~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~V 81 (154)
T 1rvv_A 35 EDALLRHGV-DTNDIDVAWVPGAFE-IPFAAKKMAETKKYDAIITLGTV 81 (154)
T ss_dssp HHHHHHTTC-CGGGEEEEEESSGGG-HHHHHHHHHHTSCCSEEEEEEEE
T ss_pred HHHHHHcCC-CccceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeee
Confidence 344444332 334577888999998 33344566666789999999985
No 40
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=41.35 E-value=14 Score=29.01 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=21.6
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
++|+++.++-+ || .||...++++|...+
T Consensus 5 ~~il~~~~~~~-Gh-v~~~~~La~~L~~~G 32 (402)
T 3ia7_A 5 RHILFANVQGH-GH-VYPSLGLVSELARRG 32 (402)
T ss_dssp CEEEEECCSSH-HH-HHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCC-cc-cccHHHHHHHHHhCC
Confidence 48998887643 33 589999999998765
No 41
>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}
Probab=40.78 E-value=45 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=17.5
Q ss_pred CCceEEEEEeecCCCCCCCCchHHHHHhCCC
Q psy4808 22 TASFKVLITGFGPFKTHTINPSWEAVSLLPD 52 (156)
Q Consensus 22 ~~~~~VliTGFgpF~~~~~NpS~~vv~~L~~ 52 (156)
...++|+|||=.-|=| ..+++.|..
T Consensus 67 ~~~~~vlVTGatG~iG------~~l~~~L~~ 91 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLG------AYLIEALQG 91 (427)
T ss_dssp CCCEEEEEECTTSHHH------HHHHHHHTT
T ss_pred CCCCEEEEecCCcHHH------HHHHHHHHc
Confidence 3467899999877644 467777743
No 42
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=40.63 E-value=17 Score=28.08 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=14.4
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.+++++.++|+|||+.-
T Consensus 57 ~~~~~~~~~~~~d~vih~a~ 76 (330)
T 2c20_A 57 AFLRDVFTQENIEAVMHFAA 76 (330)
T ss_dssp HHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHhhcCCCEEEECCc
Confidence 34556666568899999865
No 43
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*
Probab=39.08 E-value=16 Score=27.75 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=34.5
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE-----EeeeecchhhhHHHHHHHHhCCCEEEEEcc
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE-----QIQVSYNYVDVTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~-----~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv 94 (156)
|+|+|||=.-|-| ..+++.|. .. .+|... .+..+.... +.+.++++..++|+|||+.-
T Consensus 1 m~ilVtGatG~iG------~~l~~~L~-~g----~~V~~~~r~~~~~~~D~~d~-~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVG------WELQRSLA-PV----GNLIALDVHSKEFCGDFSNP-KGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHH------HHHHHHTT-TT----SEEEEECTTCSSSCCCTTCH-HHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHH------HHHHHHhh-cC----CeEEEeccccccccccCCCH-HHHHHHHHhcCCCEEEECcc
Confidence 4799999866644 46777776 43 233222 122333322 34566666668999999964
No 44
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=38.88 E-value=26 Score=28.53 Aligned_cols=20 Identities=10% Similarity=-0.022 Sum_probs=14.3
Q ss_pred HHHHHHHHhCCCEEEEEccc
Q psy4808 76 TVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv~ 95 (156)
.+..+.+..+||+|+|++-.
T Consensus 103 ~~~~~~~~~~~D~Vih~Aa~ 122 (399)
T 3nzo_A 103 YDAFIKADGQYDYVLNLSAL 122 (399)
T ss_dssp HHHHHHHCCCCSEEEECCCC
T ss_pred HHHHHHHhCCCCEEEECCCc
Confidence 34555555799999998754
No 45
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=38.71 E-value=25 Score=25.63 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=31.1
Q ss_pred HHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 47 VSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 47 v~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
.+.|..... ...+|....+|=+|+ ..-...++.+..++|.||.+|.-
T Consensus 35 ~~~l~~~gv-~~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIalG~V 81 (154)
T 1hqk_A 35 IDCIVRHGG-REEDITLVRVPGSWE-IPVAAGELARKEDIDAVIAIGVL 81 (154)
T ss_dssp HHHHHHTTC-CGGGEEEEEESSGGG-HHHHHHHHHTCTTCCEEEEEEEE
T ss_pred HHHHHHcCC-CccceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeee
Confidence 344444332 334577888999998 33344556666689999999985
No 46
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=38.20 E-value=32 Score=25.16 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=32.1
Q ss_pred cEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeec
Q psy4808 59 IEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAA 108 (156)
Q Consensus 59 ~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~ 108 (156)
-.|....+|=+|+ ..-...++.+..++|.||.+|.-=+-.....|-++.
T Consensus 47 ~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~ 95 (156)
T 3nq4_A 47 DNITVVWVPGAYE-LPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAG 95 (156)
T ss_dssp TSEEEEEESSTTT-HHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHHHHH
T ss_pred cceEEEEcCcHHH-HHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHH
Confidence 3567778999998 344455666677899999999853333333344433
No 47
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=36.62 E-value=17 Score=28.21 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=14.9
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.++++..++|+|||+.-
T Consensus 68 ~~~~~~~~~~~~d~vih~A~ 87 (341)
T 3enk_A 68 RALARIFDAHPITAAIHFAA 87 (341)
T ss_dssp HHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHhccCCcEEEECcc
Confidence 44566666678999999874
No 48
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=36.62 E-value=24 Score=27.75 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=19.6
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
|+|+++.++ +.+ ..||.-.++++|...+
T Consensus 2 MrIl~~~~~-~~g-h~~~~~~la~~L~~~G 29 (391)
T 3tsa_A 2 MRVLVVPLP-YPT-HLMAMVPLCWALQASG 29 (391)
T ss_dssp CEEEEECCS-CHH-HHHTTHHHHHHHHHTT
T ss_pred cEEEEEcCC-Ccc-hhhhHHHHHHHHHHCC
Confidence 578777765 222 4577888999998765
No 49
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=36.60 E-value=32 Score=25.18 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=33.4
Q ss_pred cEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeecc
Q psy4808 59 IEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 59 ~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~N 109 (156)
-+|....+|=+|+ ..-.+.++.+..++|.||.+|.-=+-.....|-++..
T Consensus 45 ~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~ 94 (157)
T 2obx_A 45 FAVDVFDVPGAYE-IPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASA 94 (157)
T ss_dssp EEEEEEEESSGGG-HHHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHH
T ss_pred cceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHH
Confidence 3577888999998 3334456666678999999999633344444444443
No 50
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*
Probab=35.83 E-value=25 Score=27.16 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=13.7
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.++++..++|+|||+.-
T Consensus 64 ~~~~~~~~~~~D~vih~A~ 82 (338)
T 1udb_A 64 LMTEILHDHAIDTVIHFAG 82 (338)
T ss_dssp HHHHHHHHTTCSEEEECCS
T ss_pred HHHHHhhccCCCEEEECCc
Confidence 4555666567999999864
No 51
>1bbg_A Pollen allergen 5; protein allergen, small highly disulfide bonded; NMR {Ambrosia trifida} SCOP: g.6.1.1 PDB: 2bbg_A 3bbg_A
Probab=35.21 E-value=10 Score=21.27 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=9.8
Q ss_pred eEEcCCCCccccc
Q psy4808 142 QVLDIDISRVDVC 154 (156)
Q Consensus 142 v~~S~dAG~yllC 154 (156)
--.+.|+|||-||
T Consensus 16 ~YCcS~~GrYCVC 28 (40)
T 1bbg_A 16 KYCCSPIGKYCVC 28 (40)
T ss_dssp SEEECSSSSSCEE
T ss_pred ceecCCCCceEEE
Confidence 3467899999666
No 52
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=35.20 E-value=22 Score=25.33 Aligned_cols=61 Identities=10% Similarity=0.185 Sum_probs=33.7
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEE---EeeeecchhhhHHHHHHHHh-CCCEEEEEcc
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKE---QIQVSYNYVDVTVPALWKKY-NPDLVIHVGV 94 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~---~LpVsy~~v~~~l~~l~~~~-~pd~vih~Gv 94 (156)
+|+|+|||=.-|=| ..+++.|. .. ..+.+... .++.+.... +.+.+++++. ++|++||..-
T Consensus 3 kM~vlVtGasg~iG------~~~~~~l~-~g--~~V~~~~r~~~~~~~D~~~~-~~~~~~~~~~~~~d~vi~~ag 67 (202)
T 3d7l_A 3 AMKILLIGASGTLG------SAVKERLE-KK--AEVITAGRHSGDVTVDITNI-DSIKKMYEQVGKVDAIVSATG 67 (202)
T ss_dssp SCEEEEETTTSHHH------HHHHHHHT-TT--SEEEEEESSSSSEECCTTCH-HHHHHHHHHHCCEEEEEECCC
T ss_pred CcEEEEEcCCcHHH------HHHHHHHH-CC--CeEEEEecCccceeeecCCH-HHHHHHHHHhCCCCEEEECCC
Confidence 35799999766533 56777776 43 22222111 123333322 3345555554 6899999754
No 53
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=34.89 E-value=24 Score=26.63 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 72 YVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 72 ~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
.+.+.+.+++++.+||+|||+|=-
T Consensus 30 ~~~~~l~~~~~~~~~d~vv~~GD~ 53 (313)
T 1ute_A 30 ANAKAIATTVKTLGADFILSLGDN 53 (313)
T ss_dssp HHHHHHHHHHHHHCCSEEEECSCC
T ss_pred HHHHHHHHHHHhcCCCEEEECCCc
Confidence 344555565667799999999984
No 54
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=34.88 E-value=31 Score=25.26 Aligned_cols=50 Identities=8% Similarity=0.055 Sum_probs=33.7
Q ss_pred cEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeecc
Q psy4808 59 IEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 59 ~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~N 109 (156)
-++....+|=+|+ ..-.+.++.+..++|.||.+|.-=+-.....|-++..
T Consensus 44 ~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~ 93 (158)
T 1di0_A 44 VEVEIFDVPGAYE-IPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATA 93 (158)
T ss_dssp EEEEEEEESSGGG-HHHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHH
T ss_pred cceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHH
Confidence 3577888999998 3334456666678999999999643344445545443
No 55
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=33.84 E-value=33 Score=25.22 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=32.5
Q ss_pred CcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeec
Q psy4808 58 NIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAA 108 (156)
Q Consensus 58 ~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~ 108 (156)
..+|....+|=+|+ ..-.+.++.+..++|.||.+|.-=+-.....|-++.
T Consensus 51 ~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~ 100 (159)
T 1kz1_A 51 LENIDIESVPGSWE-LPQGIRASIARNTYDAVIGIGVLIKGSTMHFEYISE 100 (159)
T ss_dssp GGGEEEEECSSGGG-HHHHHHHHHHHSCCSEEEEEEEEECCSSSHHHHHHH
T ss_pred ccceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHH
Confidence 34577788999998 333445666667899999999853333333444443
No 56
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=33.83 E-value=65 Score=23.25 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=48.0
Q ss_pred ceEEEEEeecCCCCCCCCch-HHHHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCC-CCe
Q psy4808 24 SFKVLITGFGPFKTHTINPS-WEAVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDM-ADK 100 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS-~~vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~-~~~ 100 (156)
+.-|+.||=+ .+...|.+ ..+.+.|.+. ++++ ....+|=+.+...+.+.+++++.+.|+||..|=.+- .+-
T Consensus 12 ~v~Ii~tGdE--~g~i~D~n~~~l~~~L~~~----G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D 85 (172)
T 1mkz_A 12 RIAILTVSNR--RGEEDDTSGHYLRDSAQEA----GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGD 85 (172)
T ss_dssp EEEEEEECSS--CCGGGCHHHHHHHHHHHHT----TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTC
T ss_pred EEEEEEEeCC--CCcccCccHHHHHHHHHHC----CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCC
Confidence 4457889988 34444544 3456666553 3344 345678777788888887776535799999987553 333
Q ss_pred eeEeee
Q psy4808 101 ITLECK 106 (156)
Q Consensus 101 i~lE~~ 106 (156)
++.|..
T Consensus 86 ~t~ea~ 91 (172)
T 1mkz_A 86 QAPEAL 91 (172)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 444433
No 57
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Probab=32.90 E-value=28 Score=26.57 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.+++++.++|.|+|+.-
T Consensus 57 ~~~~~~~~~~~d~vi~~a~ 75 (311)
T 2p5y_A 57 GVERAFREFRPTHVSHQAA 75 (311)
T ss_dssp HHHHHHHHHCCSEEEECCS
T ss_pred HHHHHHHhcCCCEEEECcc
Confidence 4556666668999999864
No 58
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=32.26 E-value=41 Score=26.39 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=15.1
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCC
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPD 52 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~ 52 (156)
.|+|+|||=.-|=| ..+++.|.+
T Consensus 10 ~~~vlVTGatG~IG------~~l~~~L~~ 32 (362)
T 3sxp_A 10 NQTILITGGAGFVG------SNLAFHFQE 32 (362)
T ss_dssp TCEEEEETTTSHHH------HHHHHHHHH
T ss_pred CCEEEEECCCCHHH------HHHHHHHHh
Confidence 57899998776643 345555544
No 59
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=31.42 E-value=11 Score=30.23 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=22.8
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
.+++|+++.++.+++ .+|.-.++++|...+
T Consensus 19 ~m~rIl~~~~~~~GH--v~p~l~La~~L~~~G 48 (415)
T 3rsc_A 19 HMAHLLIVNVASHGL--ILPTLTVVTELVRRG 48 (415)
T ss_dssp CCCEEEEECCSCHHH--HGGGHHHHHHHHHTT
T ss_pred cCCEEEEEeCCCccc--cccHHHHHHHHHHCC
Confidence 357899988764333 689999999998765
No 60
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=30.77 E-value=18 Score=25.16 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 74 DVTVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 74 ~~~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
...+.+.+..++||+ +|++|.........+|....|
T Consensus 55 ~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~ 91 (185)
T 3hp4_A 55 LRRLDALLEQYEPTHVLIELGANDGLRGFPVKKMQTN 91 (185)
T ss_dssp HHHHHHHHHHHCCSEEEEECCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEeecccCCCCcCHHHHHHH
Confidence 345566666679996 667887654334444444444
No 61
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=28.76 E-value=1.3e+02 Score=21.90 Aligned_cols=62 Identities=19% Similarity=0.299 Sum_probs=38.4
Q ss_pred EEEEEeecCCCCCCCCchHHHHHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEccc
Q psy4808 26 KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVS 95 (156)
Q Consensus 26 ~VliTGFgpF~~~~~NpS~~vv~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~ 95 (156)
-|+++=|-. .+=-.-..+.|..... ..++....+|=+|+--. .+.++.+..++|.||.+|.-
T Consensus 6 ~IV~arfn~-----~~Ll~gA~~~L~~~G~--~~~i~~~~VPGafEiP~-aak~la~~~~yDavIaLG~V 67 (156)
T 2b99_A 6 GIVDTTFAR-----VDMASIAIKKLKELSP--NIKIIRKTVPGIKDLPV-ACKKLLEEEGCDIVMALGMP 67 (156)
T ss_dssp EEEEESSCS-----SCCHHHHHHHHHHHCT--TCEEEEEEESSGGGHHH-HHHHHHHHSCCSEEEEEECC
T ss_pred EEEEEecch-----HHHHHHHHHHHHHcCC--CCeEEEEECCcHHHHHH-HHHHHHhcCCCCEEEEeccc
Confidence 355555544 3333445555655442 33455578898888433 33555666789999999997
No 62
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=28.67 E-value=52 Score=24.33 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHhCCCCCCCCCcEEEEEEeeeecchhhhHHHHHHH-----HhCCCEEEEEcccCCCCeeeEeeeec
Q psy4808 47 VSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWK-----KYNPDLVIHVGVSDMADKITLECKAA 108 (156)
Q Consensus 47 v~~L~~~~~~~~~~i~~~~LpVsy~~v~~~l~~l~~-----~~~pd~vih~Gv~~~~~~i~lE~~A~ 108 (156)
.+.|..... ...+|....+|=+|+ ..-.+.++.+ ..++|.||.+|.-=+-.....|-++.
T Consensus 39 ~~~L~~~Gv-~~~~i~v~~VPGafE-iP~aak~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~ 103 (168)
T 1ejb_A 39 IERMASLGV-EENNIIIETVPGSYE-LPWGTKRFVDRQAKLGKPLDVVIPIGVLIKGSTMHFEYISD 103 (168)
T ss_dssp HHHHHHTTC-CGGGEEEEECSSGGG-HHHHHHHHHHHHHHTTCCCSEEEEEEEEECCSSSHHHHHHH
T ss_pred HHHHHHcCC-CccceEEEECCcHHH-HHHHHHHHHhhccccCCCcCEEEEecccccCCchHHHHHHH
Confidence 344444332 334577888999998 3333344544 35789999999863333333444443
No 63
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Probab=28.62 E-value=80 Score=24.36 Aligned_cols=63 Identities=14% Similarity=-0.009 Sum_probs=33.4
Q ss_pred eEEEEEeecCCCCCCCCchHHHHHhCCCCCC-CCCcEEEEE---------------EeeeecchhhhHHHHHHHHhC-CC
Q psy4808 25 FKVLITGFGPFKTHTINPSWEAVSLLPDRIP-NTNIEIVKE---------------QIQVSYNYVDVTVPALWKKYN-PD 87 (156)
Q Consensus 25 ~~VliTGFgpF~~~~~NpS~~vv~~L~~~~~-~~~~~i~~~---------------~LpVsy~~v~~~l~~l~~~~~-pd 87 (156)
|+|+|||=.-|-| ..+++.|.+... +...+|... .+..+.... +.+.++++..+ +|
T Consensus 2 ~~vlVtGatG~iG------~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~-~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 2 SVALIVGVTGIIG------NSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDP-DDSQAKLSPLTDVT 74 (364)
T ss_dssp EEEEEETTTSHHH------HHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSH-HHHHHHHTTCTTCC
T ss_pred CEEEEECCCcHHH------HHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCH-HHHHHHHhcCCCCC
Confidence 6899998766644 466777765430 000233221 112222221 34555665544 89
Q ss_pred EEEEEcc
Q psy4808 88 LVIHVGV 94 (156)
Q Consensus 88 ~vih~Gv 94 (156)
+|||+.-
T Consensus 75 ~vih~a~ 81 (364)
T 2v6g_A 75 HVFYVTW 81 (364)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999864
No 64
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=28.25 E-value=55 Score=23.91 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=44.2
Q ss_pred ceEEEEEeecCC----C-CCCCCchHH-HHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 24 SFKVLITGFGPF----K-THTINPSWE-AVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 24 ~~~VliTGFgpF----~-~~~~NpS~~-vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
+.-|+.||=+-+ . +...|.+.. +...|.+. ++++ ....+|=+.+...+.+.+.+++...|+||..|=.+
T Consensus 17 rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~----G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s 92 (178)
T 2pjk_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIEN----GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTG 92 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHT----TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCS
T ss_pred EEEEEEeCcccccccccCCeEeehHHHHHHHHHHHC----CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 445788995443 3 455555544 44555443 3344 34468888888888888877653479999998654
No 65
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=27.94 E-value=83 Score=23.07 Aligned_cols=79 Identities=18% Similarity=0.150 Sum_probs=52.1
Q ss_pred CceEEEEEeecCCCCCCCCchHH-HHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWE-AVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MAD 99 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~-vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~~ 99 (156)
++.-|+.||=+=..|...|.+.. +++.|.+. ++++ ....+|=+.+...+.+.+++++ .|+||..|=.+ +.+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~----G~~v~~~~iv~Dd~~~I~~~l~~a~~~--~DlVittGG~g~~~~ 77 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYH----GYQVRRGFVVMDDLDEIGWAFRVALEV--SDLVVSSGGLGPTFD 77 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHT----TCEEEEEEEECSCHHHHHHHHHHHHHH--CSEEEEESCCSSSTT
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHC----CCEEEEEEEeCCCHHHHHHHHHHHHhc--CCEEEEcCCCcCCcc
Confidence 34568999987665666665554 44455443 3444 3456787888888888887765 69999998544 444
Q ss_pred eeeEeeee
Q psy4808 100 KITLECKA 107 (156)
Q Consensus 100 ~i~lE~~A 107 (156)
-++.|..|
T Consensus 78 D~T~ea~a 85 (172)
T 3kbq_A 78 DMTVEGFA 85 (172)
T ss_dssp CCHHHHHH
T ss_pred cchHHHHH
Confidence 56666655
No 66
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=27.55 E-value=56 Score=23.85 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=30.2
Q ss_pred hhhhHHHHHHHHhCC-CE-EEEEcccCCCCee--eEeeeeccccCCCCCCceEEecCCHHHHHHHHHhh
Q psy4808 72 YVDVTVPALWKKYNP-DL-VIHVGVSDMADKI--TLECKAAELCQCTDSIDVIKTALDVESLVKEFQTN 136 (156)
Q Consensus 72 ~v~~~l~~l~~~~~p-d~-vih~Gv~~~~~~i--~lE~~A~N~~Pd~~gp~~~~T~l~~~~l~~~l~~~ 136 (156)
.....+.+.+...+| |+ +|++|........ ..|... -+++++++++++.
T Consensus 87 ~~~~~l~~~l~~~~p~d~VvI~~GtND~~~~~~~~~~~~~----------------~~l~~li~~ir~~ 139 (232)
T 3dci_A 87 NGARALEVALSCHMPLDLVIIMLGTNDIKPVHGGRAEAAV----------------SGMRRLAQIVETF 139 (232)
T ss_dssp BHHHHHHHHHHHHCSCSEEEEECCTTTTSGGGTSSHHHHH----------------HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhhCCCCCEEEEEeccCCCccccCCCHHHHH----------------HHHHHHHHHHHHh
Confidence 345667777777888 85 7789987654332 222222 2356777777775
No 67
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=26.28 E-value=1.1e+02 Score=21.89 Aligned_cols=76 Identities=18% Similarity=0.163 Sum_probs=46.7
Q ss_pred ceEEEEEeecCCCCCCCCch-HHHHHhCCCCCCCCCcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CCCe
Q psy4808 24 SFKVLITGFGPFKTHTINPS-WEAVSLLPDRIPNTNIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MADK 100 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS-~~vv~~L~~~~~~~~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~~~ 100 (156)
+.-|+.||=+- +...|.+ ..+...|.+.+ +++ ....+|=+.+...+.+.+.+++.+.|+||..|=.+ +.+-
T Consensus 15 rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~~G----~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D 88 (169)
T 1y5e_A 15 RCKIVTISDTR--TEETDKSGQLLHELLKEAG----HKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRD 88 (169)
T ss_dssp EEEEEEECSSC--CTTTCHHHHHHHHHHHHHT----CEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTC
T ss_pred EEEEEEEcCcc--CeeccChHHHHHHHHHHCC----CeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence 44578899876 4444544 44555555433 343 34567777777778887777633679999998654 3333
Q ss_pred eeEee
Q psy4808 101 ITLEC 105 (156)
Q Consensus 101 i~lE~ 105 (156)
++.|.
T Consensus 89 ~t~ea 93 (169)
T 1y5e_A 89 VTIEA 93 (169)
T ss_dssp CHHHH
T ss_pred CcHHH
Confidence 44443
No 68
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=25.16 E-value=29 Score=26.82 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.1
Q ss_pred ecCCCCCCCCchHHH
Q psy4808 32 FGPFKTHTINPSWEA 46 (156)
Q Consensus 32 FgpF~~~~~NpS~~v 46 (156)
+|++.|++.|||-..
T Consensus 19 ~g~i~GVTTNPsli~ 33 (223)
T 3s1x_A 19 WGIVDGVTTNPTLIS 33 (223)
T ss_dssp HTCCCEEECCHHHHH
T ss_pred cCCcccccCCHHHHH
Confidence 578899999999543
No 69
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=24.75 E-value=49 Score=24.16 Aligned_cols=50 Identities=18% Similarity=0.157 Sum_probs=31.8
Q ss_pred cEEEEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccCCCCeeeEeeeecc
Q psy4808 59 IEIVKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 59 ~~i~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~~~~~i~lE~~A~N 109 (156)
..+....+|=+|+ ..-.+.++.+..++|.||.+|.-=+-.....|-++..
T Consensus 46 ~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~ 95 (156)
T 1c2y_A 46 EDIDVVWVPGAYE-LGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNS 95 (156)
T ss_dssp SCCEEEEESSHHH-HHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHH
T ss_pred CceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHH
Confidence 3466778888888 3334455666678999999998633334444444433
No 70
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=24.55 E-value=46 Score=28.98 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCEEEEEcc
Q psy4808 76 TVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 76 ~l~~l~~~~~pd~vih~Gv 94 (156)
.+.+++++.++|+|||+.-
T Consensus 75 ~l~~~~~~~~~D~Vih~A~ 93 (699)
T 1z45_A 75 GLEKVFKEYKIDSVIHFAG 93 (699)
T ss_dssp HHHHHHHHSCCCEEEECCS
T ss_pred HHHHHHHhCCCCEEEECCc
Confidence 4555666568999999864
No 71
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A
Probab=24.48 E-value=48 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=12.1
Q ss_pred hHHHHHHHHhCCCEEEEEcc
Q psy4808 75 VTVPALWKKYNPDLVIHVGV 94 (156)
Q Consensus 75 ~~l~~l~~~~~pd~vih~Gv 94 (156)
+.+.++++ ++|+|||+.-
T Consensus 59 ~~~~~~~~--~~d~vih~A~ 76 (345)
T 2bll_A 59 EWIEYHVK--KCDVVLPLVA 76 (345)
T ss_dssp HHHHHHHH--HCSEEEECBC
T ss_pred HHHHhhcc--CCCEEEEccc
Confidence 34555554 5799999854
No 72
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7}
Probab=24.30 E-value=45 Score=27.01 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHhCCCEEEEEcccC
Q psy4808 72 YVDVTVPALWKKYNPDLVIHVGVSD 96 (156)
Q Consensus 72 ~v~~~l~~l~~~~~pd~vih~Gv~~ 96 (156)
.+.+.+.+..++.+||+||+.|-.-
T Consensus 21 ~va~~m~~~~~~~~pd~vl~~GD~~ 45 (342)
T 3tgh_A 21 LNAKYFKQFIKNERVTFIVSPGSNF 45 (342)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSCSB
T ss_pred HHHHHHHHHHhhcCCCEEEECCCcc
Confidence 3445666677778999999999743
No 73
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=23.07 E-value=60 Score=24.28 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=40.7
Q ss_pred ceEEEEEeecCCC-----CCC-CCchHHHHH-hCCCCCCC-CCcEEEEEE--eee--------ecchhhhHHHHHHHHhC
Q psy4808 24 SFKVLITGFGPFK-----THT-INPSWEAVS-LLPDRIPN-TNIEIVKEQ--IQV--------SYNYVDVTVPALWKKYN 85 (156)
Q Consensus 24 ~~~VliTGFgpF~-----~~~-~NpS~~vv~-~L~~~~~~-~~~~i~~~~--LpV--------sy~~v~~~l~~l~~~~~ 85 (156)
..+|+|-|-.|=. |.+ ..+|..... .|...++. .++-|...+ -|- ..+.|...+.+.++..+
T Consensus 50 ~a~lm~VGeaPG~~e~~~G~pF~g~sG~~L~~~L~~~Gl~r~~~yitn~vkc~P~~nr~P~~~Ei~~C~~~L~~ei~~~~ 129 (204)
T 1vk2_A 50 DTRIVFVGEGPGEEEDKTGRPFVGRAGMLLTELLRESGIRREDVYICNVVKCRPPNNRTPTPEEQAACGHFLLAQIEIIN 129 (204)
T ss_dssp TCSEEEEESCCCHHHHHHTCSSCSHHHHHHHHHHHHTTCCGGGSEEEESCSSCCGGGCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCcchhhcCCCCcChHHHHHHHHHHHcCCCcCcEEEecccCCcCCCCcCCCHHHHHHHHHHHHHHHHhCC
Confidence 4578998887621 111 247755443 33333331 233332221 111 23346777888888899
Q ss_pred CCEEEEEccc
Q psy4808 86 PDLVIHVGVS 95 (156)
Q Consensus 86 pd~vih~Gv~ 95 (156)
|.+||.+|..
T Consensus 130 P~vIv~lG~~ 139 (204)
T 1vk2_A 130 PDVIVALGAT 139 (204)
T ss_dssp CSEEEEESHH
T ss_pred ccEEEeecHH
Confidence 9999999975
No 74
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.68 E-value=51 Score=23.56 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=13.3
Q ss_pred HHHHhCCCEEEEEcccCC
Q psy4808 80 LWKKYNPDLVIHVGVSDM 97 (156)
Q Consensus 80 l~~~~~pd~vih~Gv~~~ 97 (156)
.+++.+||+|||.|=-..
T Consensus 27 ~~~~~~~D~vi~~GDl~~ 44 (228)
T 1uf3_A 27 LAPDTGADAIALIGNLMP 44 (228)
T ss_dssp HHHHHTCSEEEEESCSSC
T ss_pred HHhhcCCCEEEECCCCCC
Confidence 344558999999997543
No 75
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=22.39 E-value=55 Score=23.45 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=14.3
Q ss_pred hhhHHHHHHHH--hCCCEEEEEccc
Q psy4808 73 VDVTVPALWKK--YNPDLVIHVGVS 95 (156)
Q Consensus 73 v~~~l~~l~~~--~~pd~vih~Gv~ 95 (156)
..+.+.+.|++ .++|+|||+|--
T Consensus 29 ~~~~l~~~~~~~~~~~D~vi~~GDl 53 (195)
T 1xm7_A 29 FEIVILTNLLKVLKPEDTLYHLGDF 53 (195)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECSCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCC
Confidence 34445555554 367888888864
No 76
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=22.09 E-value=61 Score=24.56 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=20.0
Q ss_pred EEEEEEeeeec-chhhhHHHHHHHHh-CCCEEEEEcc
Q psy4808 60 EIVKEQIQVSY-NYVDVTVPALWKKY-NPDLVIHVGV 94 (156)
Q Consensus 60 ~i~~~~LpVsy-~~v~~~l~~l~~~~-~pd~vih~Gv 94 (156)
++......++- +.+.+.+.++.+++ ++|++||..-
T Consensus 64 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 100 (281)
T 3svt_A 64 AIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAG 100 (281)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 44455555543 33445555555544 6799999754
No 77
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=22.05 E-value=74 Score=20.13 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=17.6
Q ss_pred ecCCHHHHHHHHHhhcCCCceE
Q psy4808 122 TALDVESLVKEFQTNKANINQV 143 (156)
Q Consensus 122 T~l~~~~l~~~l~~~~~g~~v~ 143 (156)
-.+|+++++++|++. |+.+.
T Consensus 59 ~gid~d~l~~~L~~~--g~~~~ 78 (81)
T 2fi0_A 59 AGTPMDKIVRTLEAN--GYEVI 78 (81)
T ss_dssp HTCCHHHHHHHHHHT--TCEEE
T ss_pred cCCCHHHHHHHHHHc--CCEee
Confidence 459999999999999 99875
No 78
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=22.01 E-value=1.2e+02 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=16.4
Q ss_pred CceEEEEEeecCCCCCCCCchHHHHHhCC
Q psy4808 23 ASFKVLITGFGPFKTHTINPSWEAVSLLP 51 (156)
Q Consensus 23 ~~~~VliTGFgpF~~~~~NpS~~vv~~L~ 51 (156)
..++|+|||=.-|-| ..+++.|.
T Consensus 149 ~~~~VLVTGatG~iG------~~l~~~L~ 171 (508)
T 4f6l_B 149 PLGNTLLTGATGFLG------AYLIEALQ 171 (508)
T ss_dssp CCEEEEESCTTSHHH------HHHHHHTB
T ss_pred CCCeEEEECCccchH------HHHHHHHH
Confidence 357999999876644 46777773
No 79
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=21.33 E-value=83 Score=23.79 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=11.2
Q ss_pred CCCCCceEEEEEeecCC
Q psy4808 19 LDVTASFKVLITGFGPF 35 (156)
Q Consensus 19 ~~~~~~~~VliTGFgpF 35 (156)
|.....|+|+|||=..|
T Consensus 21 M~~l~~k~vlVTGasg~ 37 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSN 37 (280)
T ss_dssp -CTTTTCEEEECCCCST
T ss_pred ccccCCCEEEEECCCCC
Confidence 33344679999996555
No 80
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=21.30 E-value=55 Score=26.93 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=22.1
Q ss_pred hHHHHHHHHhCCCE-EEEEcccCCCCeeeEeeeecc
Q psy4808 75 VTVPALWKKYNPDL-VIHVGVSDMADKITLECKAAE 109 (156)
Q Consensus 75 ~~l~~l~~~~~pd~-vih~Gv~~~~~~i~lE~~A~N 109 (156)
..+.+++.+.+||+ ||++|.+.....+..+....|
T Consensus 234 ~~~~~~l~~~~pdlVvI~lGtND~~~~~~~~~~~~~ 269 (385)
T 3skv_A 234 PMFARLIRDLPADLISLRVGTSNFMDGDGFVDFPAN 269 (385)
T ss_dssp HHHHHHHHHSCCSEEEEEESHHHHTTTCCTTTHHHH
T ss_pred HHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHH
Confidence 35566667778986 688998765444444444443
No 81
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=20.77 E-value=1.4e+02 Score=21.17 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=47.1
Q ss_pred ceEEEEEeecCCCCCCCCchH-HHHHhCCCCCCCC-CcEE-EEEEeeeecchhhhHHHHHHHHhCCCEEEEEcccC-CCC
Q psy4808 24 SFKVLITGFGPFKTHTINPSW-EAVSLLPDRIPNT-NIEI-VKEQIQVSYNYVDVTVPALWKKYNPDLVIHVGVSD-MAD 99 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~-~vv~~L~~~~~~~-~~~i-~~~~LpVsy~~v~~~l~~l~~~~~pd~vih~Gv~~-~~~ 99 (156)
+.-|+.||=+=..+...|.+. .+.+.|......- ++++ ....+|=+.+...+.+.+.++..+.|+||..|=.+ +.+
T Consensus 7 rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~ 86 (167)
T 1uuy_A 7 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPR 86 (167)
T ss_dssp EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT
T ss_pred EEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC
Confidence 345788887655555555443 2344443321001 4554 34567777777888887776534689999998654 333
Q ss_pred eeeEe
Q psy4808 100 KITLE 104 (156)
Q Consensus 100 ~i~lE 104 (156)
-++.|
T Consensus 87 D~t~~ 91 (167)
T 1uuy_A 87 DVTPE 91 (167)
T ss_dssp CCHHH
T ss_pred CchHH
Confidence 34433
No 82
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=20.63 E-value=70 Score=22.87 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred hhhHHHHHHHH-hCCCE-EEEEcccCCC----CeeeEeeeeccccCCCCCCceEEecCCHHHHHHHHHhhcCCCceEE
Q psy4808 73 VDVTVPALWKK-YNPDL-VIHVGVSDMA----DKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANINQVL 144 (156)
Q Consensus 73 v~~~l~~l~~~-~~pd~-vih~Gv~~~~----~~i~lE~~A~N~~Pd~~gp~~~~T~l~~~~l~~~l~~~~~g~~v~~ 144 (156)
....+.+.+.. .+||+ +|++|..... ....+|... -+++++++.+++. |.++.+
T Consensus 59 ~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~----------------~~l~~~i~~~~~~--~~~vil 118 (240)
T 3mil_A 59 ALKILPEILKHESNIVMATIFLGANDACSAGPQSVPLPEFI----------------DNIRQMVSLMKSY--HIRPII 118 (240)
T ss_dssp HHHHHHHHHHHCCCEEEEEEECCTTTTSSSSTTCCCHHHHH----------------HHHHHHHHHHHHT--TCEEEE
T ss_pred HHHHHHHHhcccCCCCEEEEEeecCcCCccCCCCCCHHHHH----------------HHHHHHHHHHHHc--CCeEEE
Confidence 33445555554 47885 6788886542 122222221 2467777777777 666544
No 83
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=20.14 E-value=16 Score=24.69 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=17.2
Q ss_pred ceEEEEEeecCCCCCCCCchHHHHHhCCCCC
Q psy4808 24 SFKVLITGFGPFKTHTINPSWEAVSLLPDRI 54 (156)
Q Consensus 24 ~~~VliTGFgpF~~~~~NpS~~vv~~L~~~~ 54 (156)
+++|+|+|+|.++ ..+++.|.+..
T Consensus 6 ~~~v~I~G~G~iG-------~~la~~L~~~g 29 (141)
T 3llv_A 6 RYEYIVIGSEAAG-------VGLVRELTAAG 29 (141)
T ss_dssp CCSEEEECCSHHH-------HHHHHHHHHTT
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCC
Confidence 4689999998875 35667776543
Done!