RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4808
         (156 letters)



>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
           aminopeptidase) {Bacillus amyloliquefaciens [TaxId:
           1390]}
          Length = 210

 Score = 95.1 bits (236), Expect = 1e-25
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 17/127 (13%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF   T+NPSWEAV  L          IV EQ+   +      +    KK+ 
Sbjct: 4   KVLLTGFDPFGGETVNPSWEAVKRLNGAA-EGPASIVSEQVPTVFYKSLAVLREAIKKHQ 62

Query: 86  PDLVIHVGVSDMADKITLECKA----------------AELCQCTDSIDVIKTALDVESL 129
           PD++I VG +    +IT E  A                              T L ++ +
Sbjct: 63  PDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGPAAYWTGLPIKRI 122

Query: 130 VKEFQTN 136
           V+E +  
Sbjct: 123 VEEIKKE 129


>d1a2za_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
           aminopeptidase) {Archaeon Thermococcus litoralis [TaxId:
           2265]}
          Length = 220

 Score = 94.0 bits (233), Expect = 4e-25
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 17/131 (12%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVLITGF PF   + NP+ +       +    N  +    + VS     + +    ++  
Sbjct: 3   KVLITGFEPFGGDSKNPTEQIAKYFDRKQI-GNAMVYGRVLPVSVKRATIELKRYLEEIK 61

Query: 86  PDLVIHVGVSDMADKITLECKAAELCQCT----------------DSIDVIKTALDVESL 129
           P++VI++G++     IT+E  A  +                    D+       L V ++
Sbjct: 62  PEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAPLAYMATLPVRAI 121

Query: 130 VKEFQTNKANI 140
            K  + N    
Sbjct: 122 TKTLRDNGIPA 132


>d1iofa_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
           aminopeptidase) {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 208

 Score = 89.7 bits (222), Expect = 1e-23
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 17/127 (13%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           KVL+TGF PF    INP+      L       + ++    + V +      +    ++  
Sbjct: 2   KVLVTGFEPFGGEKINPTERIAKDLDGIKI-GDAQVFGRVLPVVFGKAKEVLEKTLEEIK 60

Query: 86  PDLVIHVGVSDMADKITLECKA----------AELCQCTDS------IDVIKTALDVESL 129
           PD+ IHVG++     I++E  A           E  +  D            + L ++ +
Sbjct: 61  PDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAPTAYFSTLPIKKI 120

Query: 130 VKEFQTN 136
           +K+    
Sbjct: 121 MKKLHER 127


>d1iu8a_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
           aminopeptidase) {Archaeon Pyrococcus horikoshii [TaxId:
           53953]}
          Length = 206

 Score = 87.8 bits (217), Expect = 6e-23
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 26  KVLITGFGPFKTHTINPSWEAVSLLPDRIPNTNIEIVKEQIQVSYNYVDVTVPALWKKYN 85
           K+L+TGF PF     NP+ + V  L +RIP    E+V E + VS+      +  +     
Sbjct: 2   KILLTGFEPFGGDDKNPTMDIVEALSERIP----EVVGEILPVSFKRAREKLLKVLDDVR 57

Query: 86  PDLVIHVGVSDMADKITLECKA 107
           PD+ I++G++     I++E  A
Sbjct: 58  PDITINLGLAPGRTHISVERVA 79


>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
          {Streptococcus suis, serotype 2 [TaxId: 1307]}
          Length = 361

 Score = 27.0 bits (59), Expect = 1.0
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 14/79 (17%)

Query: 26 KVLITGFGPFK-THT----INPSWEAVSLLPDRIPNT----NIEIVKEQIQVSYNYVDVT 76
          K+LITG   F  +      I  + + V  + D++       ++  + E  + ++ + D+ 
Sbjct: 2  KILITGGAGFIGSAVVRHIIKNTQDTVVNI-DKLTYAGNLESLSDISESNRYNFEHADIC 60

Query: 77 ----VPALWKKYNPDLVIH 91
              +  ++++Y PD V+H
Sbjct: 61 DSAEITRIFEQYQPDAVMH 79


>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
           domain {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 388

 Score = 25.8 bits (55), Expect = 3.0
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 80  LWKKYNPDLVIHVGVSDMADKITLECKAAELCQ 112
           L+K  +    +   V+D+  ++TL  K  ++ Q
Sbjct: 4   LYK--DATKPVEDRVADLLGRMTLAEKIGQMTQ 34


>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 57

 Score = 24.1 bits (52), Expect = 3.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 129 LVKEFQTNKANINQVL 144
           LVK+ Q  K  +NQVL
Sbjct: 22  LVKKCQVPKKTLNQVL 37


>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
           mosquito (Anopheles gambiae) [TaxId: 7165]}
          Length = 175

 Score = 25.2 bits (55), Expect = 3.3
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 82  KKYNPDLVIHVGVSDMADKITLECKAAELCQCTDSIDVIKTALDVESLVKEFQTNKANIN 141
           K+     V  V ++      T      +  +  D  + ++  L  E  V  F+T   +  
Sbjct: 76  KEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALR--LRQEIRVDPFRTGFGHAK 133

Query: 142 QVLDIDISRVDVC 154
           +   ID++ V +C
Sbjct: 134 EPGSIDLNAVRLC 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,571
Number of extensions: 24616
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 12
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.1 bits)