BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4809
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F2K|A Chain A, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|1F2K|B Chain B, Crystal Structure Of Acanthamoeba Castellanii Profilin Ii,
Cubic Crystal Form
pdb|2ACG|A Chain A, Acanthamoeba Castellanii Profilin Ii
Length = 125
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 9 LVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPI 68
L F+ + S+G LAG RY+ + D+ + K G GV +KT +A++I +Y + I
Sbjct: 45 LANAFKDATAIRSNGFELAGTRYVTIRADDRSVYGKKGSAGVITVKTSKAILIGVYNEKI 104
Query: 69 QPQQAASVVEKLGDYLVSCGY 89
QP AA+VVEKL DYL+ G+
Sbjct: 105 QPGTAANVVEKLADYLIGQGF 125
>pdb|1PRQ|A Chain A, Acanthamoeba Castellanii Profilin Ia
pdb|2PRF|A Chain A, Three Dimensional Solution Structure Of Acanthamoeba
Profilin I
Length = 125
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 9 LVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPI 68
L F D + +SG LAG Y+ L D+ I K G GV +KT +++++ +Y + I
Sbjct: 45 LASAFNNADPIRASGFDLAGVHYVTLRADDRSIYGKKGSAGVITVKTSKSILVGVYNEKI 104
Query: 69 QPQQAASVVEKLGDYLVSCGY 89
QP AA+VVEKL DYL+ G+
Sbjct: 105 QPGTAANVVEKLADYLIGQGF 125
>pdb|1ACF|A Chain A, Acanthamoeba Castellanii Profilin Ib
Length = 125
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 9 LVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPI 68
L F D + + G LAG Y+ L D+ I K G GV +KT +A+++ +Y + I
Sbjct: 45 LAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGKKGSSGVITVKTSKAILVGVYNEKI 104
Query: 69 QPQQAASVVEKLGDYLVSCGY 89
QP AA+VVEKL DYL+ G+
Sbjct: 105 QPGTAANVVEKLADYLIGQGF 125
>pdb|1YPR|A Chain A, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1YPR|B Chain B, Saccharomyces Cerevisiae (Yeast) Profilin
pdb|1K0K|A Chain A, Yeast Profilin, Cubic Crystal Form
Length = 125
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 54/89 (60%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVV 60
L +E+G++VQGF+ L S+G+ + G +++ L D+ I + GV C++T+Q V+
Sbjct: 37 LQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVI 96
Query: 61 ISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
I+ Y +Q +A +VE+L DYL+ Y
Sbjct: 97 IAHYPPTVQAGEATKIVEQLADYLIGVQY 125
>pdb|1G5U|A Chain A, Latex Profilin Hevb8
pdb|1G5U|B Chain B, Latex Profilin Hevb8
Length = 131
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG-TDKVIRAKLGKVGVHCMKTQQAV 59
DE+ +++ F++ L +G+ L G +Y+ + G VIR K G G+ +T QA+
Sbjct: 42 FKSDEVAAVMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGSGGITVKRTGQAL 101
Query: 60 VISLYEDPIQPQQAASVVEKLGDYLVSCG 88
+I +Y++P+ P Q +VE+LGDYL+ G
Sbjct: 102 IIGIYDEPLTPGQCNMIVERLGDYLLDQG 130
>pdb|1CQA|A Chain A, Birch Pollen Profilin
Length = 133
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 5 ELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG-TDKVIRAKLGKVGVHCMKTQQAVVISL 63
E+ +++ FE+ L +G+ L G +Y+ + G VIR K G G+ KT QA+V +
Sbjct: 48 EITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGI 107
Query: 64 YEDPIQPQQAASVVEKLGDYLVSCG 88
YE+P+ P Q VVE+LGDYL+ G
Sbjct: 108 YEEPVTPGQCNMVVERLGDYLIDQG 132
>pdb|3D9Y|A Chain A, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3D9Y|B Chain B, Crystal Structure Of Profilin From Schizosaccharomyces
Pombe
pdb|3DAV|A Chain A, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
pdb|3DAV|B Chain B, Schizosaccharomyces Pombe Profilin Crystallized From
Sodium Formate
Length = 127
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVV 60
LS E+ L GF+ + +G+ LAG +YI + + I KL K G+ C+ T+ ++
Sbjct: 39 LSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCIL 98
Query: 61 ISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
+S Y + P +AA + E L DYLV GY
Sbjct: 99 VSHYPETTLPGEAAKITEALADYLVGVGY 127
>pdb|1A0K|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 131
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTD-KVIRAKLGKVGVHCMKTQQAV 59
L E+ + + FE+ L +G+ L G +Y+ + G VIR K G GV KT QA+
Sbjct: 42 LKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQAL 101
Query: 60 VISLYEDPIQPQQAASVVEKLGDYLVS 86
V Y++P+ Q VVE+LGDYL+
Sbjct: 102 VFGFYDEPMTGGQCNLVVERLGDYLIE 128
>pdb|3NUL|A Chain A, Profilin I From Arabidopsis Thaliana
Length = 130
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTD-KVIRAKLGKVGVHCMKTQQAV 59
L E+ + + FE+ L +G+ L G +Y + G VIR K G GV KT QA+
Sbjct: 41 LKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYXVIQGEQGAVIRGKKGPGGVTIKKTNQAL 100
Query: 60 VISLYEDPIQPQQAASVVEKLGDYLVS 86
V Y++P Q VVE+LGDYL+
Sbjct: 101 VFGFYDEPXTGGQCNLVVERLGDYLIE 127
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 5 ELGKLVQGFEK-QDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVH 51
E +L Q FE Q +L SS GNR++Y V++A L G H
Sbjct: 441 EETQLFQDFEPVQTLLLSSK---KGNRFVYAGSNSGVVQAPLAFCGKH 485
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 7 GKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKL---GKVGVHC 52
GK+V Q V LA N+Y +G+D+VIR ++ K G+ C
Sbjct: 676 GKIVATDCYQSAEAPHSVALASNKYSVKAGSDEVIRIEIDITDKNGIPC 724
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 63 LYEDPIQPQQAASVVEKLGDYLVSCGY 89
LY D QP+QAA VV +L GY
Sbjct: 151 LYADVAQPEQAAIVVRNARFFLRDGGY 177
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 25 TLAGNRYIYLSGTDKV------IRAKLGKVGVHCMKTQQAV 59
T+ GNRY Y+SGT + A L G + ++ +QA+
Sbjct: 213 TITGNRYAYMSGTSMASPHVAGLAALLASQGRNNIEIRQAI 253
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 3 KDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVG--------VHCMK 54
K E G L +GF + D + S + + G + YL T+ I G+ G + MK
Sbjct: 713 KIEKGDLKKGFSEADNVVSGELYIGGQEHFYLE-TNCTIAVPKGEAGEMELFVSTQNTMK 771
Query: 55 TQQAV 59
TQ V
Sbjct: 772 TQSFV 776
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 3 KDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVG--------VHCMK 54
K E G L +GF + D + S + + G + YL T+ I G+ G + MK
Sbjct: 713 KIEKGDLKKGFSEADNVVSGELYIGGQEHFYLE-TNCTIAVPKGEAGEMELFVSTQNTMK 771
Query: 55 TQQAV 59
TQ V
Sbjct: 772 TQSFV 776
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 25.4 bits (54), Expect = 8.6, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 3 KDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVG--------VHCMK 54
K E G L +GF + D + S + + G + YL T+ I G+ G + MK
Sbjct: 713 KIEKGDLKKGFSEADNVVSGELYIGGQEHFYLE-TNCTIAVPKGEAGEMELFVSTQNTMK 771
Query: 55 TQQAV 59
TQ V
Sbjct: 772 TQSFV 776
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 3 KDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG--TDKVIRAKLGKVGV-----HCMKT 55
K E G L +GF + D + S + + G + YL T V + + G++ + + MKT
Sbjct: 714 KIEKGDLKKGFSEADNVVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKT 773
Query: 56 QQAV 59
Q V
Sbjct: 774 QSFV 777
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 3 KDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG--TDKVIRAKLGKVGV-----HCMKT 55
K E G L +GF + D + S + + G + YL T V + + G++ + + MKT
Sbjct: 714 KIEKGDLKKGFSEADNVVSGEIYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQNTMKT 773
Query: 56 QQAV 59
Q V
Sbjct: 774 QSFV 777
>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|B Chain B, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|C Chain C, Crystal Structure Of Ispg (Gcpe)
pdb|3NOY|D Chain D, Crystal Structure Of Ispg (Gcpe)
Length = 366
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 14 EKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDP-IQPQQ 72
E+ D+ G+T AG GT +I++ +G + M V +SL +DP ++ +
Sbjct: 201 ERTDVPLHIGITEAG------MGTKGIIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVET 254
Query: 73 AASVVEKLG 81
A +++ LG
Sbjct: 255 AYEILKSLG 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,500,856
Number of Sequences: 62578
Number of extensions: 84111
Number of successful extensions: 228
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 19
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)