Query psy4809
Match_columns 89
No_of_seqs 101 out of 383
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:17:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nul_A Profilin I; cytoskeleto 100.0 2.7E-36 9.1E-41 195.3 12.3 89 1-89 41-130 (130)
2 1ypr_A Profilin; actin-binding 100.0 2.4E-36 8.1E-41 194.4 11.8 89 1-89 37-125 (125)
3 3d9y_A Profilin; yeast, actin- 100.0 1.6E-36 5.6E-41 195.5 10.7 89 1-89 39-127 (127)
4 1acf_A Profilin I; protein bin 100.0 7.9E-36 2.7E-40 191.8 10.8 89 1-89 37-125 (125)
5 2v8f_A Profilin-2, profilin II 100.0 9.5E-33 3.3E-37 180.6 11.8 87 1-89 43-140 (140)
6 2pbd_P Profilin-1, profilin I; 100.0 2.3E-32 7.8E-37 178.6 12.1 87 1-89 42-139 (139)
7 3nec_A Profilin, inflammatory 100.0 6.8E-32 2.3E-36 180.9 7.5 87 1-89 68-166 (166)
8 2jkg_A Profilin; proline-rich 100.0 1E-31 3.6E-36 181.0 7.5 86 2-89 74-171 (179)
9 4g29_A Secreted effector prote 55.0 9.2 0.00031 25.4 2.7 20 70-89 39-58 (186)
10 3uoa_B Mucosa-associated lymph 54.9 16 0.00056 26.8 4.3 35 55-89 5-41 (390)
11 3bij_A Uncharacterized protein 51.6 21 0.00071 24.5 4.3 34 56-89 4-45 (285)
12 2c71_A Glycoside hydrolase, fa 48.2 27 0.00094 22.7 4.3 31 58-89 150-180 (216)
13 2eap_A Lymphocyte cytosolic pr 45.1 6.8 0.00023 23.2 0.8 13 77-89 24-36 (90)
14 1p3h_A 10 kDa chaperonin; beta 43.4 14 0.00047 22.1 2.0 18 21-38 75-92 (99)
15 1pcq_O Groes protein; chaperon 42.7 14 0.00049 21.9 2.0 18 21-38 73-90 (97)
16 4af8_A Metacaspase MCA2; hydro 42.7 28 0.00096 25.3 3.9 34 56-89 93-128 (367)
17 2h54_A Caspase-1; allosteric s 42.6 41 0.0014 21.7 4.4 33 57-89 45-79 (178)
18 3fni_A Putative diflavin flavo 41.2 51 0.0017 20.3 4.6 32 54-88 2-33 (159)
19 3nx6_A 10KDA chaperonin; bacte 40.6 19 0.00065 21.3 2.3 18 21-38 72-89 (95)
20 1ik9_C DNA ligase IV; DNA END 38.5 22 0.00076 17.3 2.0 14 1-14 22-35 (37)
21 2jmk_A Hypothetical protein TA 38.3 64 0.0022 19.3 5.5 38 49-89 67-105 (111)
22 2cc0_A Acetyl-xylan esterase; 38.3 38 0.0013 21.5 3.7 19 71-89 159-177 (195)
23 2ck3_D ATP synthase subunit be 37.8 24 0.00082 26.7 3.0 35 55-89 217-253 (482)
24 3gqb_A V-type ATP synthase alp 36.9 26 0.00088 27.2 3.0 33 57-89 285-318 (578)
25 3vr4_A V-type sodium ATPase ca 36.6 25 0.00085 27.4 2.9 33 57-89 296-329 (600)
26 1fx0_A ATP synthase alpha chai 36.5 35 0.0012 26.0 3.7 34 56-89 221-255 (507)
27 1we3_O CPN10(groes); chaperoni 35.0 18 0.0006 21.7 1.5 18 21-38 77-94 (100)
28 2wj8_A Nucleoprotein; RNA bind 33.6 15 0.00053 26.6 1.3 29 60-88 333-361 (391)
29 4f6o_A Metacaspase-1; rossmann 33.6 36 0.0012 24.5 3.3 34 56-89 54-90 (350)
30 1fx0_B ATP synthase beta chain 31.6 24 0.00081 26.8 2.1 34 56-89 231-266 (498)
31 2w3z_A Putative deacetylase; P 31.5 66 0.0022 22.4 4.3 31 58-89 275-305 (311)
32 2z8u_A Tata-box-binding protei 31.4 92 0.0031 20.4 4.7 40 46-89 57-96 (188)
33 3mfy_A V-type ATP synthase alp 30.3 25 0.00086 27.3 2.0 33 57-89 291-324 (588)
34 3oaa_A ATP synthase subunit al 30.0 37 0.0013 25.9 2.9 34 56-89 220-254 (513)
35 2qe7_A ATP synthase subunit al 29.8 36 0.0012 25.8 2.8 34 56-89 220-254 (502)
36 3ct5_A Morphogenesis protein 1 28.8 59 0.002 20.5 3.4 26 64-89 5-30 (159)
37 1f4p_A Flavodoxin; electron tr 28.4 77 0.0026 18.6 3.8 19 70-88 11-29 (147)
38 3c5y_A Ribose/galactose isomer 28.1 50 0.0017 22.7 3.0 33 57-89 18-50 (231)
39 2c61_A A-type ATP synthase non 28.0 35 0.0012 25.6 2.5 34 56-89 214-249 (469)
40 2r9v_A ATP synthase subunit al 27.6 37 0.0012 25.9 2.5 33 57-89 234-267 (515)
41 3gqb_B V-type ATP synthase bet 27.4 64 0.0022 24.2 3.8 34 56-89 216-251 (464)
42 3eik_A Tata-box-binding protei 27.3 1.4E+02 0.0049 20.0 5.4 36 50-89 91-126 (218)
43 3f6r_A Flavodoxin; FMN binding 27.1 98 0.0034 18.2 4.1 20 69-88 11-30 (148)
44 3vr4_D V-type sodium ATPase su 26.2 51 0.0018 24.8 3.1 34 56-89 213-248 (465)
45 1czn_A Flavodoxin; FMN binding 26.1 90 0.0031 18.8 3.8 34 55-88 80-113 (169)
46 2ck3_A ATP synthase subunit al 25.9 41 0.0014 25.6 2.5 33 57-89 229-262 (510)
47 1ais_A TBP, protein (tata-bind 24.1 1.5E+02 0.0052 19.2 5.3 39 47-89 54-92 (182)
48 2hna_A Protein MIOC, flavodoxi 23.8 71 0.0024 18.9 3.0 20 69-88 11-30 (147)
49 3iz6_M 40S ribosomal protein S 23.1 26 0.00088 22.5 0.8 19 1-19 59-77 (152)
50 3ice_A Transcription terminati 22.9 65 0.0022 24.0 3.0 33 57-89 228-261 (422)
51 2j32_A Caspase-3; Pro-caspase3 22.2 1E+02 0.0035 20.6 3.8 33 57-89 18-55 (250)
52 2ra8_A Uncharacterized protein 22.1 2.1E+02 0.0071 20.0 7.5 51 28-89 12-65 (362)
53 5nul_A Flavodoxin; electron tr 22.1 1.1E+02 0.0037 17.7 3.5 31 54-89 78-108 (138)
54 1mp9_A Tata-binding protein; t 20.9 1.2E+02 0.004 20.0 3.7 37 49-89 60-96 (198)
No 1
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=2.7e-36 Score=195.26 Aligned_cols=89 Identities=37% Similarity=0.671 Sum_probs=87.4
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEec-CcEEEEecCCceEEEEEcCceEEEEEeCCCCChhhHHHHHHH
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGT-DKVIRAKLGKVGVHCMKTQQAVVISLYEDPIQPQQAASVVEK 79 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~d-~~~i~~kkg~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~ 79 (89)
|+|+|++.|++.|+||+.++++||+|+|+||+++|+| +++||+||+++|++++||+|+||||+|+++++|++|+++||+
T Consensus 41 ~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~~~i~~kkg~~Gv~i~kT~~aivig~y~e~~~~g~~~~~ve~ 120 (130)
T 3nul_A 41 LKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVER 120 (130)
T ss_dssp CCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETTTEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCCcEEEEecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q psy4809 80 LGDYLVSCGY 89 (89)
Q Consensus 80 lAdyL~~~gy 89 (89)
|||||+++||
T Consensus 121 ladYL~~~GY 130 (130)
T 3nul_A 121 LGDYLIESEL 130 (130)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999999998
No 2
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=2.4e-36 Score=194.38 Aligned_cols=89 Identities=35% Similarity=0.707 Sum_probs=87.5
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEecCcEEEEecCCceEEEEEcCceEEEEEeCCCCChhhHHHHHHHH
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPIQPQQAASVVEKL 80 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~d~~~i~~kkg~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~l 80 (89)
++|+|+++|+++|+||+.++++||+|+|+||+++|.|+++||+||+++|++++||+|+||||+|+++++|++|+++||+|
T Consensus 37 ~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d~~~i~~kk~~~Gi~i~kT~~aivI~~y~e~~~~g~~~~~ve~l 116 (125)
T 1ypr_A 37 LQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVIIAHYPPTVQAGEATKIVEQL 116 (125)
T ss_dssp CCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEECSSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecCCcEEEEecCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q psy4809 81 GDYLVSCGY 89 (89)
Q Consensus 81 AdyL~~~gy 89 (89)
||||+++||
T Consensus 117 adYL~~~gy 125 (125)
T 1ypr_A 117 ADYLIGVQY 125 (125)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 999999998
No 3
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=1.6e-36 Score=195.45 Aligned_cols=89 Identities=36% Similarity=0.670 Sum_probs=87.6
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEecCcEEEEecCCceEEEEEcCceEEEEEeCCCCChhhHHHHHHHH
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPIQPQQAASVVEKL 80 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~d~~~i~~kkg~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~l 80 (89)
++|+|++.|++.|+||+.++++||+|+|+||+++|+|+++||+||+++|++|+||+|+||||+|+++++|++|+++||+|
T Consensus 39 ~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d~~~i~~kkg~~Gv~i~kT~~aivi~~y~e~~~~g~~~~~ve~l 118 (127)
T 3d9y_A 39 LSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEAL 118 (127)
T ss_dssp CCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEECSSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeCcceEEEEcCCceEEEEECCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q psy4809 81 GDYLVSCGY 89 (89)
Q Consensus 81 AdyL~~~gy 89 (89)
||||+++||
T Consensus 119 adYL~~~Gy 127 (127)
T 3d9y_A 119 ADYLVGVGY 127 (127)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHcCC
Confidence 999999998
No 4
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=7.9e-36 Score=191.81 Aligned_cols=89 Identities=37% Similarity=0.645 Sum_probs=87.4
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEecCcEEEEecCCceEEEEEcCceEEEEEeCCCCChhhHHHHHHHH
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPIQPQQAASVVEKL 80 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~d~~~i~~kkg~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~l 80 (89)
++|+|++.|++.|+||+.++++||+|+|+||+++|.|+++||+|++++|++++||+++||||+|+++++|++|+++||+|
T Consensus 37 ~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d~~~i~~kk~~~Gv~i~kT~~aivI~~y~~~~~~g~~~~~ve~l 116 (125)
T 1acf_A 37 VTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGKKGSSGVITVKTSKAILVGVYNEKIQPGTAANVVEKL 116 (125)
T ss_dssp CCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEESSSEEEEEETTEEEEEEECSSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEecCcEEEeecCCCeEEEEECCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q psy4809 81 GDYLVSCGY 89 (89)
Q Consensus 81 AdyL~~~gy 89 (89)
||||+++||
T Consensus 117 adyL~~~gy 125 (125)
T 1acf_A 117 ADYLIGQGF 125 (125)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHcCC
Confidence 999999998
No 5
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=100.00 E-value=9.5e-33 Score=180.64 Aligned_cols=87 Identities=17% Similarity=0.298 Sum_probs=84.3
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEe----c-CcE--EEEecCCce----EEEEEcCceEEEEEeCCCCC
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG----T-DKV--IRAKLGKVG----VHCMKTQQAVVISLYEDPIQ 69 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~----d-~~~--i~~kkg~~G----~~i~KT~~aiiIg~y~~~~~ 69 (89)
++|+|+++|+ + +||+.++++||+|+|+||+++|+ | +++ +|+||+++| ++++||+|+||||+|+++++
T Consensus 43 ~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~ir~~l~~d~~~~~di~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~ 120 (140)
T 2v8f_A 43 ITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVH 120 (140)
T ss_dssp CCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEEEEETTSTTTCEEEEEECCCSSSCCCEEEEEECSSEEEEEEECTTCC
T ss_pred CCHHHHHHHH-c-CCccccccCCeEECCEEEEEEecccccCCCceEEEEEecCCCCCceeEEEEEcCCEEEEEEcCCCCC
Confidence 6899999999 7 99999999999999999999999 7 778 999999999 99999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q psy4809 70 PQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 70 ~~~~~~~ve~lAdyL~~~gy 89 (89)
|++|+++||+|||||+++||
T Consensus 121 ~g~~~~~ve~ladYL~~~Gy 140 (140)
T 2v8f_A 121 GGGLNKKAYSMAKYLRDSGF 140 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998
No 6
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=100.00 E-value=2.3e-32 Score=178.59 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=83.7
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEe----c-CcEE--EEecCCce----EEEEEcCceEEEEEeCCCCC
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG----T-DKVI--RAKLGKVG----VHCMKTQQAVVISLYEDPIQ 69 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~----d-~~~i--~~kkg~~G----~~i~KT~~aiiIg~y~~~~~ 69 (89)
++|+|+++|+ . +||+.++++||+|+|+||+++|+ | ++++ |+|++++| ++++||+|+||||+|+++++
T Consensus 42 ~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir~~~~~d~~~~id~~~kk~~~G~~~~v~i~KT~~alvI~~y~e~~~ 119 (139)
T 2pbd_P 42 ITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFNVTVTKTDKTLVLLMGKEGVH 119 (139)
T ss_dssp CCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEEEETTCTTTCEEEEEECCSTTCCCCEEEEEECSSEEEEEEECTTCC
T ss_pred CCHHHHHHHH-c-cCcccccccCeEECCEEEEEEecccccCCCcEEeeeeccCCCCCceEEEEEEcCCEEEEEEcCCCCC
Confidence 6899999999 6 79999999999999999999999 7 6788 99999999 99999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q psy4809 70 PQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 70 ~~~~~~~ve~lAdyL~~~gy 89 (89)
|++|+++||+|||||+++||
T Consensus 120 ~g~~~~~ve~ladYL~~~Gy 139 (139)
T 2pbd_P 120 GGLINKKCYEMASHLRRSQY 139 (139)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998
No 7
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=99.97 E-value=6.8e-32 Score=180.89 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=82.2
Q ss_pred CCHHHHHHHHhhcCCCccccccceEEcceEEEEEEecC---------cEEEEecCCceEEEEEcCc-eEEEEEeCCC--C
Q psy4809 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTD---------KVIRAKLGKVGVHCMKTQQ-AVVISLYEDP--I 68 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~d~---------~~i~~kkg~~G~~i~KT~~-aiiIg~y~~~--~ 68 (89)
|+|+|+++|+++|++. ++++||+|+|+||+++|.|+ +++|+||+++|++|+||+| +||||+|+++ +
T Consensus 68 ~~~~E~~~i~~~f~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~~Gv~i~KT~~~aiVI~~y~e~~~~ 145 (166)
T 3nec_A 68 VSINEASTIKAAVDDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIKTPNGSIVIALYDEEKEQ 145 (166)
T ss_dssp EEECHHHHHHHHHHHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEECTTSEEEEEEEEGGGTC
T ss_pred CCHHHHHHHHHHhhcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCCceEEEEEeCCCEEEEEEccCCCcc
Confidence 3789999999999873 47899999999999999986 6789999999999999999 9999999999 8
Q ss_pred ChhhHHHHHHHHHHHHHhCCC
Q psy4809 69 QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 69 ~~~~~~~~ve~lAdyL~~~gy 89 (89)
+|++|+++||+|||||+++||
T Consensus 146 ~~g~~~~~ve~ladYL~~~GY 166 (166)
T 3nec_A 146 DKGNSRTSALAFAEYLHQSGY 166 (166)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998
No 8
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=99.97 E-value=1e-31 Score=180.96 Aligned_cols=86 Identities=19% Similarity=0.290 Sum_probs=80.6
Q ss_pred CHHHHHHHHhhcCCCccccccceEEcceEEEEEEec-C--------cEEEEecCCceEEEEEc-CceEEEEEeCCC--CC
Q psy4809 2 SKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGT-D--------KVIRAKLGKVGVHCMKT-QQAVVISLYEDP--IQ 69 (89)
Q Consensus 2 s~~E~~~i~~~f~~~~~~~~~Gi~l~G~kY~~~r~d-~--------~~i~~kkg~~G~~i~KT-~~aiiIg~y~~~--~~ 69 (89)
+|+|+++|+++|++ .++++||+|+|+||+++|.| + +++|+||+++|++|+|| +|+||||+|+++ ++
T Consensus 74 ~~~E~~~I~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgkgGv~ivKT~~qaiVIg~YdE~k~~~ 151 (179)
T 2jkg_A 74 TINEGQTILVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVKVPGGNILVVLYDEEKEQD 151 (179)
T ss_dssp EECHHHHHHHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEETTTEEEEEEEEGGGTCC
T ss_pred CHHHHHHHHHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCCCcEEEEEECCCeEEEEEecCCCCcC
Confidence 68999999999976 67889999999999999999 6 78999999999999999 999999999999 99
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q psy4809 70 PQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 70 ~~~~~~~ve~lAdyL~~~gy 89 (89)
|++|+++|++|||||+++||
T Consensus 152 ~g~c~~~ve~LadYL~~~Gy 171 (179)
T 2jkg_A 152 RGNSKIAALTFAKELAESSQ 171 (179)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999997
No 9
>4g29_A Secreted effector protein SSEI; cysteine protease superfamily, protein binding; 1.70A {Salmonella enterica subsp} PDB: 4g2b_A
Probab=55.05 E-value=9.2 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHhCCC
Q psy4809 70 PQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 70 ~~~~~~~ve~lAdyL~~~gy 89 (89)
.++|...+..++++|++.||
T Consensus 39 ~~~Ce~s~~~V~~~Lk~~gy 58 (186)
T 4g29_A 39 VGQCESLMTPVSNFMNEKGF 58 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 47899999999999999997
No 10
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1; paracaspase, lymphoma, NF-KB signalling, caspase fold, immun fold, hydrolase-hydrolase inhibitor complex; 1.75A {Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Probab=54.94 E-value=16 Score=26.79 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=25.9
Q ss_pred cCceEEEEE--eCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 55 TQQAVVISL--YEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 55 T~~aiiIg~--y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
.+-|+|||. |+....-..|..-++.|++.|++.||
T Consensus 5 ~r~ALIIGn~~Y~~~~~L~ga~~DA~~L~~~L~~lGF 41 (390)
T 3uoa_B 5 DKVALLIGNMNYREHPKLKAPLVDVYELTNLLRQLDF 41 (390)
T ss_dssp CEEEEEEECCCCSSSCCCSTHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEecCCCCcccCCChHHHHHHHHHHHHHcCC
Confidence 346899997 44432334588889999999999886
No 11
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.50A {Geobacter sulfurreducens pca}
Probab=51.61 E-value=21 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.149 Sum_probs=25.5
Q ss_pred CceEEEEEeC-------CCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 56 QQAVVISLYE-------DPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 56 ~~aiiIg~y~-------~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.|||||.-. ... .-..|..-++.|++.|++.||
T Consensus 4 ~~ALlIGi~~Y~~~~Y~~~~~~L~~~~nDa~~~~~~L~~~Gf 45 (285)
T 3bij_A 4 GIALALGLNAVDPKHYGGWAGKLNACEADAEDMAAIAAERGF 45 (285)
T ss_dssp EEEEEEECSCCCTTTTTTCCCCCSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEeCCccccccCCCcccCCCCHHHHHHHHHHHHHcCC
Confidence 4689999854 222 234699999999999998876
No 12
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme, dockerin type I\:polysaccharide...; acetyl-xylan, esterases, metal-ION; 1.05A {Clostridium thermocellum} SCOP: c.6.2.3 PDB: 2c79_A
Probab=48.21 E-value=27 Score=22.74 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 58 AVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 58 aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
.||+ +++....+.+..++...+-++|++.||
T Consensus 150 ~IiL-~Hd~~~~~~~t~~al~~ii~~l~~~Gy 180 (216)
T 2c71_A 150 TIIL-LHDVQPEPHPTPEALDIIIPTLKSRGY 180 (216)
T ss_dssp BEEE-EESCCSSSCCHHHHHHHHHHHHHHTTC
T ss_pred cEEE-EECCCCChHHHHHHHHHHHHHHHHCCC
Confidence 4544 445433345677899999999999998
No 13
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.14 E-value=6.8 Score=23.20 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=10.9
Q ss_pred HHHHHHHHHhCCC
Q psy4809 77 VEKLGDYLVSCGY 89 (89)
Q Consensus 77 ve~lAdyL~~~gy 89 (89)
.+.+||||++.||
T Consensus 24 p~~VadWLkk~g~ 36 (90)
T 2eap_A 24 PDSLADYFKKLNY 36 (90)
T ss_dssp TTTHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 3578999999987
No 14
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=43.41 E-value=14 Score=22.07 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=15.4
Q ss_pred ccceEEcceEEEEEEecC
Q psy4809 21 SSGVTLAGNRYIYLSGTD 38 (89)
Q Consensus 21 ~~Gi~l~G~kY~~~r~d~ 38 (89)
.+-+.++|++|+++|.+|
T Consensus 75 Gtevk~dgeey~i~re~D 92 (99)
T 1p3h_A 75 GTEIKYNGEEYLILSARD 92 (99)
T ss_dssp CEEEEETTEEEEEEEGGG
T ss_pred CeEEEECCEEEEEEEhHh
Confidence 456999999999999876
No 15
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=42.74 E-value=14 Score=21.91 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.3
Q ss_pred ccceEEcceEEEEEEecC
Q psy4809 21 SSGVTLAGNRYIYLSGTD 38 (89)
Q Consensus 21 ~~Gi~l~G~kY~~~r~d~ 38 (89)
.+-+.++|++|+++|.+|
T Consensus 73 Gtevk~dgeey~i~re~D 90 (97)
T 1pcq_O 73 VKSEKIDNEEVLIMSESD 90 (97)
T ss_dssp CEEEEETTEEEEEEEGGG
T ss_pred CeEEEECCEEEEEEEhHH
Confidence 355999999999999876
No 16
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=42.68 E-value=28 Score=25.32 Aligned_cols=34 Identities=15% Similarity=0.075 Sum_probs=26.1
Q ss_pred CceEEEEEeCCCC--ChhhHHHHHHHHHHHHHhCCC
Q psy4809 56 QQAVVISLYEDPI--QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~--~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.|+|||.-.-+. .-..|..-++.|+++|++.||
T Consensus 93 r~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~GF 128 (367)
T 4af8_A 93 VRALFIGINYYGTSAALSGCCNDVKQMLATLQKRGL 128 (367)
T ss_dssp EEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHTTC
T ss_pred eEEEEEEeCCCCCccCCCCHHHHHHHHHHHHHHcCC
Confidence 4689998865442 234699999999999998776
No 17
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=42.58 E-value=41 Score=21.72 Aligned_cols=33 Identities=21% Similarity=0.184 Sum_probs=23.8
Q ss_pred ceEEEEEeC--CCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYE--DPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~--~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
.||||+... .-.....+..-++.|++-|++.||
T Consensus 45 ~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF 79 (178)
T 2h54_A 45 LALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGY 79 (178)
T ss_dssp EEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTC
T ss_pred EEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCC
Confidence 466776643 322445688899999999999987
No 18
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=41.24 E-value=51 Score=20.30 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=23.7
Q ss_pred EcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCC
Q psy4809 54 KTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCG 88 (89)
Q Consensus 54 KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~g 88 (89)
|+++-++|.++.. .|+..+.++.+|+-|.+.|
T Consensus 2 ~~~~kv~IvY~S~---~GnT~~iA~~ia~~l~~~g 33 (159)
T 3fni_A 2 KAETSIGVFYVSE---YGYSDRLAQAIINGITKTG 33 (159)
T ss_dssp CCCCEEEEEECTT---STTHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECC---ChHHHHHHHHHHHHHHHCC
Confidence 4555666666553 4889999999999998765
No 19
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=40.64 E-value=19 Score=21.28 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.2
Q ss_pred ccceEEcceEEEEEEecC
Q psy4809 21 SSGVTLAGNRYIYLSGTD 38 (89)
Q Consensus 21 ~~Gi~l~G~kY~~~r~d~ 38 (89)
.+-+.++|++|+++|.+|
T Consensus 72 Gtevk~dg~ey~i~re~D 89 (95)
T 3nx6_A 72 GSSYKSEGVEYKVLREDD 89 (95)
T ss_dssp SEEEEETTEEEEEEEGGG
T ss_pred CeEEEECCEEEEEEEHHH
Confidence 456889999999999875
No 20
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=38.47 E-value=22 Score=17.27 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=11.4
Q ss_pred CCHHHHHHHHhhcC
Q psy4809 1 LSKDELGKLVQGFE 14 (89)
Q Consensus 1 ~s~~E~~~i~~~f~ 14 (89)
++++|++.|++.++
T Consensus 22 ~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 22 TDLNQLKEVFSGIK 35 (37)
T ss_dssp CCHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHcc
Confidence 47899999998764
No 21
>2jmk_A Hypothetical protein TA0956; protein binding; NMR {Thermoplasma acidophilum} PDB: 2k24_A
Probab=38.35 E-value=64 Score=19.30 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=25.3
Q ss_pred eEEEEEcC-ceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 49 GVHCMKTQ-QAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 49 G~~i~KT~-~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
|++++-.. +.+=|.+.+ .-++..+.++..++-.+..||
T Consensus 67 GFvviN~dKK~mSvsFsd---~~~~~K~~i~ei~kkykd~Gy 105 (111)
T 2jmk_A 67 GFVVVNADKKLMSVSFSD---IDENMKKVIKATAEKFKNKGF 105 (111)
T ss_dssp EEEEEETTTTEEEEEECS---CCTTHHHHHHHHHHHGGGGCC
T ss_pred EEEEEecCCeEEEEEeeh---hhhhHHHHHHHHHHHhhcCCc
Confidence 45544444 444444433 235788899999999999998
No 22
>2cc0_A Acetyl-xylan esterase; hydrolase, carbohydrate esterase; 1.6A {Streptomyces lividans} SCOP: c.6.2.3
Probab=38.33 E-value=38 Score=21.50 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHhCCC
Q psy4809 71 QQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 71 ~~~~~~ve~lAdyL~~~gy 89 (89)
.+..++...+-++|++.||
T Consensus 159 ~~t~~al~~ii~~l~~~Gy 177 (195)
T 2cc0_A 159 ANTLAAIPRIAQTLAGKGL 177 (195)
T ss_dssp HHHHHHHHHHHHHHHHTTE
T ss_pred hhHHHHHHHHHHHHHHCCC
Confidence 3567889999999999997
No 23
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=37.84 E-value=24 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=26.2
Q ss_pred cCceEEEEEeCCCC-ChhhHHHHHHHHHHHHHh-CCC
Q psy4809 55 TQQAVVISLYEDPI-QPQQAASVVEKLGDYLVS-CGY 89 (89)
Q Consensus 55 T~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~-~gy 89 (89)
.++.+|++..+++. ..-.+....-.+|+||++ +|+
T Consensus 217 ~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~ 253 (482)
T 2ck3_D 217 SKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQ 253 (482)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677888888765 234577788889999999 775
No 24
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=36.86 E-value=26 Score=27.22 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=23.7
Q ss_pred ceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.+|.+..+++. ..-.+..+.-.+|+||+++|+
T Consensus 285 tvvv~~tsd~p~~~R~~~~~~altiAEyfrd~G~ 318 (578)
T 3gqb_A 285 TVLIANTSNMPVAAREASIYVGVTIAEYFRDQGF 318 (578)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467777777764 223466677789999999985
No 25
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=36.60 E-value=25 Score=27.42 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=23.8
Q ss_pred ceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.+|.+..+++. ..-.+..+.-.+|+||+++|+
T Consensus 296 tvvV~~tsd~p~~~R~~~~~~altiAEyfrd~G~ 329 (600)
T 3vr4_A 296 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 329 (600)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467777777764 233466677889999999885
No 26
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=36.54 E-value=35 Score=25.96 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=24.7
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
++.+|.+..+++. ..-.+..+.-.+|+|++.+|+
T Consensus 221 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 255 (507)
T 1fx0_A 221 YTIVVAETADSPATLQYLAPYTGAALAEYFMYRER 255 (507)
T ss_dssp SEEEEEECTTSCGGGTTHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4467777777764 233577788889999999885
No 27
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=34.96 E-value=18 Score=21.67 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.2
Q ss_pred ccceEEcceEEEEEEecC
Q psy4809 21 SSGVTLAGNRYIYLSGTD 38 (89)
Q Consensus 21 ~~Gi~l~G~kY~~~r~d~ 38 (89)
.+-+.++|++|+++|.+|
T Consensus 77 Gtevk~dgeeyli~re~D 94 (100)
T 1we3_O 77 GTEIEIDGEEYVILSERD 94 (100)
T ss_dssp SEEEECSSCEEEEECTTT
T ss_pred CeEEEECCEEEEEEEhHH
Confidence 456899999999999876
No 28
>2wj8_A Nucleoprotein; RNA binding protein RNA complex, nucleocapsid (N), ribonucleoprotein, respiratory syncytial virus (RSV); 3.29A {Human respiratory syncytial virus astrain long} PDB: 2yhm_A 2yhp_A 2yhq_A
Probab=33.65 E-value=15 Score=26.61 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=23.2
Q ss_pred EEEEeCCCCChhhHHHHHHHHHHHHHhCC
Q psy4809 60 VISLYEDPIQPQQAASVVEKLGDYLVSCG 88 (89)
Q Consensus 60 iIg~y~~~~~~~~~~~~ve~lAdyL~~~g 88 (89)
|||+|...........+.+.-|+.|+++|
T Consensus 333 IiG~YrG~~~N~eLf~AA~~YA~~Lkenn 361 (391)
T 2wj8_A 333 IMGEYRGTPRNQDLYDAAKAYAEQLKENG 361 (391)
T ss_dssp CCSSCCCCCSCHHHHHHHHHHHHHHTTCC
T ss_pred eeeeccCCCCChHHHHHHHHHHHHHHhcC
Confidence 57888887766678888888888888875
No 29
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae}
Probab=33.63 E-value=36 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=25.0
Q ss_pred CceEEEEEeCCCC--ChhhHHHHHHHHHHHHHhC-CC
Q psy4809 56 QQAVVISLYEDPI--QPQQAASVVEKLGDYLVSC-GY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~--~~~~~~~~ve~lAdyL~~~-gy 89 (89)
+.|||||.-.-+. .-..|..-++.|+++|++. ||
T Consensus 54 r~ALlIGIn~Y~~~~~L~g~vnDA~~m~~~L~~~~Gf 90 (350)
T 4f6o_A 54 RKALIIGINYIGSKNQLRGCINDAHNIFNFLTNGYGY 90 (350)
T ss_dssp EEEEEEECCCTTSTTCCSSHHHHHHHHHHHHHHHSCC
T ss_pred EEEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4689999854332 2246999999999999985 65
No 30
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=31.55 E-value=24 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=25.8
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHHh-CCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLVS-CGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~-~gy 89 (89)
++.+|++..+++. ..-.+....-.+|+||+. +|+
T Consensus 231 rtvvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~ 266 (498)
T 1fx0_B 231 KVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQ 266 (498)
T ss_dssp CEEEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCC
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5678888888865 334577778889999999 775
No 31
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=31.50 E-value=66 Score=22.36 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=23.2
Q ss_pred eEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 58 AVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 58 aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
..||-+++... .....++...+-++|++.||
T Consensus 275 g~IIL~Hd~~g-~~~t~~aL~~iI~~Lk~~Gy 305 (311)
T 2w3z_A 275 VQVVLMHDISE-KTITLASLPQIIRYYKDRGY 305 (311)
T ss_dssp EEEEEEECSTT-CHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCC-hhhHHHHHHHHHHHHHHCCC
Confidence 35667777432 24677899999999999998
No 32
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=31.41 E-value=92 Score=20.37 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=29.1
Q ss_pred CCceEEEEEcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 46 GKVGVHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 46 g~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
.+.-+.|..+.+-++-|.. +...+..++.++++.|++.||
T Consensus 57 Pk~t~lIF~SGKiv~TGAk----S~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 57 PKVALLIFRSGKVNCTGAK----SKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp TTEEEEECTTSEEEEEEES----SHHHHHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEeCCCeEEEecCC----CHHHHHHHHHHHHHHHHhcCC
Confidence 3444566666666666654 345899999999999999885
No 33
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=30.25 E-value=25 Score=27.34 Aligned_cols=33 Identities=12% Similarity=0.317 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.+|.+..+++. ..-.+..+.-.+|+|++++|+
T Consensus 291 tvvV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~ 324 (588)
T 3mfy_A 291 TVLIANTSNMPVAAREASIYTGITIAEYFRDMGY 324 (588)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355566666553 223466667789999999885
No 34
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=30.04 E-value=37 Score=25.90 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=23.0
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
++.+|.+.-+++. ..-.+-.+.-.+|+|++++|+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 254 (513)
T 3oaa_A 220 NTIVVVATASESAALQYLAPYAGCAMGEYFRDRGE 254 (513)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666666654 223466777889999999885
No 35
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=29.83 E-value=36 Score=25.85 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=22.6
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
++.+|.+..+++. ..-.+..+.-.+|+|++.+|+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 254 (502)
T 2qe7_A 220 YTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGK 254 (502)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3456666666653 222456667789999999885
No 36
>3ct5_A Morphogenesis protein 1; cell WALL, hydrolase, infection, late protein; HET: NAG; 1.37A {Bacteriophage phi-29} PDB: 3csz_A* 3csr_A* 3ct0_A* 3ct1_A*
Probab=28.78 E-value=59 Score=20.50 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.3
Q ss_pred eCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 64 YEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 64 y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
..+..+++...+.+..+.+||++.||
T Consensus 5 ~~~~~t~~~~~~~a~~i~~~l~~~G~ 30 (159)
T 3ct5_A 5 SNKYLTMSEMKVNAQYILNYLSSNGW 30 (159)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 35667889999999999999999886
No 37
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=28.38 E-value=77 Score=18.61 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHhCC
Q psy4809 70 PQQAASVVEKLGDYLVSCG 88 (89)
Q Consensus 70 ~~~~~~~ve~lAdyL~~~g 88 (89)
.|++...++.+++.|.+.|
T Consensus 11 ~Gnt~~~a~~i~~~l~~~g 29 (147)
T 1f4p_A 11 TGNTEYTAETIARELADAG 29 (147)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhcC
Confidence 3789999999999987654
No 38
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=28.12 E-value=50 Score=22.66 Aligned_cols=33 Identities=27% Similarity=0.212 Sum_probs=25.7
Q ss_pred ceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
+...|+.-.+..+.+....--+.|.+||.+.||
T Consensus 18 ~~mkiali~~~sqa~kN~~lKe~i~~~L~~~G~ 50 (231)
T 3c5y_A 18 QGMKIALIIENSQAAKNAVVHEALTTVAEPLGH 50 (231)
T ss_dssp -CCEEEECCCGGGGGGHHHHHHHHHHHHGGGTC
T ss_pred hcceEEEEecCCHhhhHHHHHHHHHHHHHHCCC
Confidence 345677777878888877888889999998876
No 39
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=28.03 E-value=35 Score=25.61 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=23.7
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHH-hCCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLV-SCGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~-~~gy 89 (89)
++.+|++..+++. ..-.+..+.-.+|+|++ ++|+
T Consensus 214 rtvvV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~ 249 (469)
T 2c61_A 214 RAVVFLNLADDPAVERIVTPRMALTAAEYLAYEHGM 249 (469)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4567777777764 22346777778999999 5774
No 40
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=27.58 E-value=37 Score=25.94 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred ceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.+|.+..+++. ..-.+..+.-.+|+|++.+|+
T Consensus 234 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 267 (515)
T 2r9v_A 234 TTVVVASASDPASLQYIAPYAGCAMGEYFAYSGR 267 (515)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456666666643 223456667789999999885
No 41
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=27.36 E-value=64 Score=24.25 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=24.0
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHHh-CCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLVS-CGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~-~gy 89 (89)
++.+|++..+++. ..-.+..+.-.+|+||+. +|+
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~ 251 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDY 251 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3566778877765 233467777889999997 574
No 42
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=27.30 E-value=1.4e+02 Score=20.04 Aligned_cols=36 Identities=6% Similarity=0.179 Sum_probs=25.2
Q ss_pred EEEEEcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 50 VHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 50 ~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.|..+.+.++.|. .+...+..++.++++-|++.|+
T Consensus 91 ~LIF~SGKiV~TGA----kS~e~a~~A~~ki~~~L~~lG~ 126 (218)
T 3eik_A 91 ALIFASGKMVITGA----KSEKSSRMAAQRYAKIIHKLGF 126 (218)
T ss_dssp EEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCeEEEEec----CCHHHHHHHHHHHHHHHHHcCC
Confidence 34444444444443 3567899999999999999885
No 43
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=27.13 E-value=98 Score=18.17 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=16.7
Q ss_pred ChhhHHHHHHHHHHHHHhCC
Q psy4809 69 QPQQAASVVEKLGDYLVSCG 88 (89)
Q Consensus 69 ~~~~~~~~ve~lAdyL~~~g 88 (89)
..|++...++.+++.|.+.|
T Consensus 11 ~tGnT~~~A~~ia~~l~~~g 30 (148)
T 3f6r_A 11 STGNTESIAQKLEELIAAGG 30 (148)
T ss_dssp SSSHHHHHHHHHHHHHHTTT
T ss_pred CCchHHHHHHHHHHHHHhCC
Confidence 35789999999999998765
No 44
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=26.23 E-value=51 Score=24.78 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCC-ChhhHHHHHHHHHHHHHh-CCC
Q psy4809 56 QQAVVISLYEDPI-QPQQAASVVEKLGDYLVS-CGY 89 (89)
Q Consensus 56 ~~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~-~gy 89 (89)
++.+|++..+++. ..-.+..+.-.+|+|++. +|+
T Consensus 213 rtvvV~atsd~p~~~r~~a~~~a~tiAEyfrd~~G~ 248 (465)
T 3vr4_D 213 RSVMFMNLANDPAIERIATPRMALTAAEYLAYEKGM 248 (465)
T ss_dssp GEEEEEEETTSCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3466677777764 223466677789999997 574
No 45
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=26.08 E-value=90 Score=18.82 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=22.7
Q ss_pred cCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCC
Q psy4809 55 TQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCG 88 (89)
Q Consensus 55 T~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~g 88 (89)
-+...+++.++....+..-..+...|.+.|.+.|
T Consensus 80 gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g 113 (169)
T 1czn_A 80 GKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLG 113 (169)
T ss_dssp TCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCC
Confidence 3567888888775444334466777888877655
No 46
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=25.94 E-value=41 Score=25.61 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=21.8
Q ss_pred ceEEEEEeCCCC-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPI-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.+|.+..+++. ..-.+..+.-.+|+|++.+|+
T Consensus 229 tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~ 262 (510)
T 2ck3_A 229 TIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGK 262 (510)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456666666653 222455667789999999885
No 47
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=24.12 E-value=1.5e+02 Score=19.15 Aligned_cols=39 Identities=28% Similarity=0.272 Sum_probs=27.2
Q ss_pred CceEEEEEcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 47 KVGVHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 47 ~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.-+.|..+.+-++-|. .+...+..++.++++.|++.|+
T Consensus 54 ~~t~lIF~SGKiv~TGa----kS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 54 KVALLIFSSGKLVVTGA----KSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp CCEEEECTTSEEEEEEE----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEeCCCeEEEecC----CCHHHHHHHHHHHHHHHHHcCC
Confidence 33445555555555554 2456899999999999999885
No 48
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=23.78 E-value=71 Score=18.95 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=16.3
Q ss_pred ChhhHHHHHHHHHHHHHhCC
Q psy4809 69 QPQQAASVVEKLGDYLVSCG 88 (89)
Q Consensus 69 ~~~~~~~~ve~lAdyL~~~g 88 (89)
..|++...++.+|+.|.+.|
T Consensus 11 ~tGnT~~~A~~ia~~l~~~g 30 (147)
T 2hna_A 11 TLGGAEYVAEHLAEKLEEAG 30 (147)
T ss_dssp TSCCCHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHCC
Confidence 34788999999999998755
No 49
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.14 E-value=26 Score=22.48 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.9
Q ss_pred CCHHHHHHHHhhcCCCccc
Q psy4809 1 LSKDELGKLVQGFEKQDIL 19 (89)
Q Consensus 1 ~s~~E~~~i~~~f~~~~~~ 19 (89)
||++|+..|.+.+++|.++
T Consensus 59 Lt~~ei~~l~~~i~~~~~~ 77 (152)
T 3iz6_M 59 LSAEEMDRLMAVVHNPRQF 77 (152)
T ss_dssp SCHHHHHHHHHHHHSCSSC
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 6899999999998887554
No 50
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=22.89 E-value=65 Score=23.99 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=22.3
Q ss_pred ceEEEEEeCCCCCh-hhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISLYEDPIQP-QQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~y~~~~~~-~~~~~~ve~lAdyL~~~gy 89 (89)
..+|.+..+++... -.+...+-.+|+||+++|.
T Consensus 228 ~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~ 261 (422)
T 3ice_A 228 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 261 (422)
T ss_dssp SEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45777777776521 2345566788999999874
No 51
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.17 E-value=1e+02 Score=20.63 Aligned_cols=33 Identities=9% Similarity=0.220 Sum_probs=23.5
Q ss_pred ceEEEEE--eCCC--C-ChhhHHHHHHHHHHHHHhCCC
Q psy4809 57 QAVVISL--YEDP--I-QPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 57 ~aiiIg~--y~~~--~-~~~~~~~~ve~lAdyL~~~gy 89 (89)
-||||+. |+.. + .......-++.|++-|++.||
T Consensus 18 ~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF 55 (250)
T 2j32_A 18 LCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKY 55 (250)
T ss_dssp EEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTC
T ss_pred EEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCC
Confidence 4778876 4321 2 334567779999999999987
No 52
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=22.11 E-value=2.1e+02 Score=20.04 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=38.1
Q ss_pred ceEEEEEEecCcE---EEEecCCceEEEEEcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 28 GNRYIYLSGTDKV---IRAKLGKVGVHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 28 G~kY~~~r~d~~~---i~~kkg~~G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
-.||..+..++.+ -|||-|..|-.-.|+ -.++..|.++.++|...=+..||
T Consensus 12 ~~kf~~~~~~~~~~~~~~GriG~~g~~~~~~-----------f~~~~~a~~~~~~l~~~k~~kGy 65 (362)
T 2ra8_A 12 SQKFWSIDVRGTDVIVNYGKLGTDGQTQVKN-----------FSSAGEAEKAAGKLIAEKTKKGY 65 (362)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSCCEEEEEE-----------CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCceEEEEEeccEEEEEECCCCCCceEEeee-----------CCCHHHHHHHHHHHHHHHHhcCC
Confidence 3577777777654 368888888877666 24678899999999887777777
No 53
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=22.07 E-value=1.1e+02 Score=17.73 Aligned_cols=31 Identities=6% Similarity=0.082 Sum_probs=22.0
Q ss_pred EcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 54 KTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 54 KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
+.+...+++.|..+. + .++..|.+.|.+.|.
T Consensus 78 ~~k~~~~f~t~g~~~--~---~a~~~l~~~l~~~G~ 108 (138)
T 5nul_A 78 SGKKVALFGSYGWGD--G---KWMRDFEERMNGYGC 108 (138)
T ss_dssp TTCEEEEEEEESSSC--S---HHHHHHHHHHHHTTC
T ss_pred CCCEEEEEEecCCCC--C---hHHHHHHHHHHHCCC
Confidence 456788888887642 2 567888888887763
No 54
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=20.93 E-value=1.2e+02 Score=20.04 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=25.5
Q ss_pred eEEEEEcCceEEEEEeCCCCChhhHHHHHHHHHHHHHhCCC
Q psy4809 49 GVHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89 (89)
Q Consensus 49 G~~i~KT~~aiiIg~y~~~~~~~~~~~~ve~lAdyL~~~gy 89 (89)
-+.|..+.+-++-|. .+...+..++.++++.|++.|+
T Consensus 60 t~lIF~SGKiv~TGa----kS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 60 TSLIFKSGKMVVTGA----KSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp EEEECTTSEEEEECC----SSHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCeEEEecc----CCHHHHHHHHHHHHHHHHHcCC
Confidence 344444444444442 3456899999999999999886
Done!