RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4809
(89 letters)
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces
cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Length = 125
Score = 98.5 bits (245), Expect = 1e-28
Identities = 31/89 (34%), Positives = 54/89 (60%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVV 60
L +E+G++VQGF+ L S+G+ + G +++ L D+ I + GV C++T+Q V+
Sbjct: 37 LQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVI 96
Query: 61 ISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
I+ Y +Q +A +VE+L DYL+ Y
Sbjct: 97 IAHYPPTVQAGEATKIVEQLADYLIGVQY 125
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A
{Schizosaccharomyces pombe} PDB: 3dav_A
Length = 127
Score = 98.5 bits (245), Expect = 2e-28
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVV 60
LS E+ L GF+ + +G+ LAG +YI + + I KL K G+ C+ T+ ++
Sbjct: 39 LSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCIL 98
Query: 61 ISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
+S Y + P +AA + E L DYLV GY
Sbjct: 99 VSHYPETTLPGEAAKITEALADYLVGVGY 127
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle
protein; 2.00A {Acanthamoeba castellanii} SCOP:
d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Length = 125
Score = 93.6 bits (232), Expect = 1e-26
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVV 60
++ + L F D + + G LAG Y+ L D+ I K G GV +KT +A++
Sbjct: 37 VTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGKKGSSGVITVKTSKAIL 96
Query: 61 ISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
+ +Y + IQP AA+VVEKL DYL+ G+
Sbjct: 97 VGVYNEKIQPGTAANVVEKLADYLIGQGF 125
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A
{Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A
1cqa_A 1g5u_A
Length = 130
Score = 92.0 bits (228), Expect = 6e-26
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTD-KVIRAKLGKVGVHCMKTQQAV 59
L E+ + + FE+ L +G+ L G +Y+ + G VIR K G GV KT QA+
Sbjct: 41 LKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQAL 100
Query: 60 VISLYEDPIQPQQAASVVEKLGDYLVSCG 88
V Y++P+ Q VVE+LGDYL+
Sbjct: 101 VFGFYDEPMTGGQCNLVVERLGDYLIESE 129
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding,
cytoplasm, acetylation, cytoskeleton, actin-binding;
1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Length = 140
Score = 68.2 bits (166), Expect = 1e-16
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYI-----YLSGTDKVIRAKLGKVG------ 49
++ E+ +V + ++ ++G+TL + D + + G
Sbjct: 43 ITPVEIDMIVG--KDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYN 100
Query: 50 VHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
V + + +V + ++ + + YL G+
Sbjct: 101 VAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF 140
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin,
poly-proline, loading poly-Pro site, GAB domain,
structural protein; HET: HIC ATP; 1.50A {Homo sapiens}
SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A*
2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P*
3u4l_P* 3ub5_P*
Length = 139
Score = 59.4 bits (143), Expect = 4e-13
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 1 LSKDELGKLVQGFEKQDILTSSGVTLAGNRYI-----YLSGTDKVIRAKLGKVG------ 49
++ E+G LV + + +G+TL G + L + + + G
Sbjct: 42 ITPAEVGVLVG--KDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTFN 99
Query: 50 VHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
V KT + +V+ + ++ + ++ +L Y
Sbjct: 100 VTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding
protein; HET: MSE; 1.70A {Toxoplasma gondii}
Length = 166
Score = 58.8 bits (141), Expect = 1e-12
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 14/98 (14%)
Query: 4 DELGKLVQGFEKQDILTSSGVTLAGNRYIYLSG---------TDKVIRAKLGKVGVHCMK 54
+E + + D +GV + G +Y + T + K G H +K
Sbjct: 71 NEASTIKAAVD--DGSAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSKGGAHLIK 128
Query: 55 T-QQAVVISLYEDPIQ--PQQAASVVEKLGDYLVSCGY 89
T ++VI+LY++ + + + +YL GY
Sbjct: 129 TPNGSIVIALYDEEKEQDKGNSRTSALAFAEYLHQSGY 166
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria,
cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Length = 179
Score = 53.4 bits (127), Expect = 2e-10
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 4 DELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTD---------KVIRAKLGKVGVHCMK 54
+E ++ F + GV L G +Y +++ V K G+H +K
Sbjct: 76 NEGQTILVVFN--EGYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLKGGLHLVK 133
Query: 55 TQ-QAVVISLYEDPIQ--PQQAASVVEKLGDYLVS 86
+++ LY++ + + L
Sbjct: 134 VPGGNILVVLYDEEKEQDRGNSKIAALTFAKELAE 168
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 1.8
Identities = 12/67 (17%), Positives = 17/67 (25%), Gaps = 42/67 (62%)
Query: 14 EKQDI--LTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVISLYEDPIQPQ 71
EKQ + L +S +K LY D P
Sbjct: 18 EKQALKKLQAS------------------------------LK--------LYADDSAPA 39
Query: 72 QA--ASV 76
A A++
Sbjct: 40 LAIKATM 46
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers,
NAD binding DOMA amino acid insertional region,
hydrolase; HET: ADN NAD; 1.60A {Mycobacterium
tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Length = 494
Score = 25.5 bits (56), Expect = 2.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 46 GKVGVHCMKTQQAVVISLYEDPIQPQQAA 74
GK MK Q A V DPI QA
Sbjct: 286 GKGCAEAMKGQGARVSVTEIDPINALQAM 314
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 24.4 bits (54), Expect = 6.2
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 4/21 (19%)
Query: 17 DILTSSGVTLAGNRYIYLSGT 37
DI++ T+ GNRY Y+SGT
Sbjct: 209 DIVS----TITGNRYAYMSGT 225
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 24.3 bits (53), Expect = 6.2
Identities = 4/21 (19%), Positives = 6/21 (28%), Gaps = 4/21 (19%)
Query: 17 DILTSSGVTLAGNRYIYLSGT 37
+I + SGT
Sbjct: 255 NITF----LRPDAKTGTGSGT 271
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 24.4 bits (54), Expect = 6.6
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 4/21 (19%)
Query: 17 DILTSSGVTLAGNRYIYLSGT 37
I + T + Y LSGT
Sbjct: 208 SIYS----TYPTSTYASLSGT 224
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 24.1 bits (53), Expect = 7.7
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 54 KTQQAVVISLYEDPIQP-----QQAASVVEKLGDYL-VSCGY 89
QA+ ++ P +Q VV ++G Y V +
Sbjct: 188 PKPQAICLA-------PSRELARQIMDVVTEMGKYTEVKTAF 222
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 24.1 bits (52), Expect = 7.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 25 TLAGNRYIYLSGT 37
T RYIY +GT
Sbjct: 394 TANNGRYIYQAGT 406
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 24.3 bits (53), Expect = 7.9
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 17 DILTSSGVTLAGNRYIYLSGT 37
DIL+ T + Y L GT
Sbjct: 229 DILS----TYPDDSYETLMGT 245
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP
1PE; 2.70A {Escherichia coli}
Length = 616
Score = 24.1 bits (53), Expect = 9.0
Identities = 7/14 (50%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 42 RAKLGKVGVHCMKT 55
RA G +GV C+ T
Sbjct: 86 RATAGNIGV-CLGT 98
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 23.7 bits (52), Expect = 10.0
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 17 DILTSSGVTLAGNRYIYLSGT 37
I + TL GN+Y +GT
Sbjct: 204 SIQS----TLPGNKYGAYNGT 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.378
Gapped
Lambda K H
0.267 0.0609 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,291,901
Number of extensions: 66249
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 26
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)