RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4809
         (89 letters)



>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 125

 Score =  102 bits (257), Expect = 1e-30
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query: 1   LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVV 60
           L  +E+G++VQGF+    L S+G+ + G +++ L   D+ I  +    GV C++T+Q V+
Sbjct: 37  LQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRADDRSIYGRHDAEGVVCVRTKQTVI 96

Query: 61  ISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
           I+ Y   +Q  +A  +VE+L DYL+   Y
Sbjct: 97  IAHYPPTVQAGEATKIVEQLADYLIGVQY 125


>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein)
           {Acanthamoeba castellanii [TaxId: 5755]}
          Length = 125

 Score =  102 bits (256), Expect = 1e-30
 Identities = 33/88 (37%), Positives = 49/88 (55%)

Query: 2   SKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTDKVIRAKLGKVGVHCMKTQQAVVI 61
           +  +   L   F   D + + G  LAG  Y+ L   D+ I  K G  GV  +KT +A+++
Sbjct: 38  TPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRADDRSIYGKKGSSGVITVKTSKAILV 97

Query: 62  SLYEDPIQPQQAASVVEKLGDYLVSCGY 89
            +Y + IQP  AA+VVEKL DYL+  G+
Sbjct: 98  GVYNEKIQPGTAANVVEKLADYLIGQGF 125


>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 130

 Score = 96.8 bits (241), Expect = 3e-28
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 1   LSKDELGKLVQGFEKQDILTSSGVTLAGNRYIYLSGTD-KVIRAKLGKVGVHCMKTQQAV 59
           L   E+  + + FE+   L  +G+ L G +Y+ + G    VIR K G  GV   KT QA+
Sbjct: 41  LKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQAL 100

Query: 60  VISLYEDPIQPQQAASVVEKLGDYLVSCG 88
           V   Y++P+   Q   VVE+LGDYL+   
Sbjct: 101 VFGFYDEPMTGGQCNLVVERLGDYLIESE 129


>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human
           (Homo sapiens), isoform I [TaxId: 9606]}
          Length = 139

 Score = 70.7 bits (173), Expect = 6e-18
 Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 12/101 (11%)

Query: 1   LSKDELGKLVQGFEK-QDILTSSGVTLAGNRYIYL-----SGTDKVIRAKLGKVG----- 49
                  ++     K +     +G+TL G +   +        +  +  +    G     
Sbjct: 39  FVNITPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMDLRTKSTGGAPTF 98

Query: 50  -VHCMKTQQAVVISLYEDPIQPQQAASVVEKLGDYLVSCGY 89
            V   KT + +V+ + ++ +          ++  +L    Y
Sbjct: 99  NVTVTKTDKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY 139


>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
           (Homo sapiens), isoform II [TaxId: 9606]}
          Length = 138

 Score = 65.4 bits (159), Expect = 7e-16
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 13  FEKQDILTSSGVTLAGNRYIYLSGTD-----------KVIRAKLGKVGVHCMKTQQAVVI 61
            + ++   ++G+TL   +   +  +               +       V   +  +A+VI
Sbjct: 52  GKDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVI 111

Query: 62  SLYEDPIQPQQAASVVEKLGDYL 84
            + ++ +          +L  YL
Sbjct: 112 VMGKEGVHGGTLNKKAYELALYL 134


>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
          {Rhodococcus erythropolis [TaxId: 1833]}
          Length = 197

 Score = 23.2 bits (50), Expect = 5.1
 Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 2/27 (7%)

Query: 55 TQQAV--VISLYEDPIQPQQAASVVEK 79
              V      +E+   P++ A +V +
Sbjct: 28 PDGYVEGWKKTFEEDFSPRRGAELVAR 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.378 

Gapped
Lambda     K      H
   0.267   0.0628    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 305,821
Number of extensions: 11576
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 6
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)