BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy481
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 105/152 (69%), Gaps = 8/152 (5%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVL--NNTAVGIGSGSTVVYAVDRLAERIKAEKL-----KI 53
+ N +E+AKR AAY+AVD+N+ ++ +GIGSGSTVVY +R+ + + K K
Sbjct: 14 LGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKF 73
Query: 54 VCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVA 113
+C+PT FQ+R LIL N + LG +E +P + DGADEVDENL LIKGGG CL QEK+V+
Sbjct: 74 ICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVS 133
Query: 114 SCTPKLVIIADHTKQS-KNLGDRYKKGIPIEV 144
+ +++AD K+S K+LG +++G+PIE+
Sbjct: 134 TSAKTFIVVADSRKKSPKHLGKNWRQGVPIEI 165
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
Length = 244
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTSFQAR 63
++ K+I AY+AVD+ V +N +G+G+GSTV Y ++R+ +K+ KLK +VC+PTS
Sbjct: 9 MDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTE 68
Query: 64 QLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIA 123
K + L LE H ++ IDG DE+D NL LIKG GG L +EK+VAS + L+II
Sbjct: 69 LKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIG 128
Query: 124 DHTKQSKNLGDRYKKGIPIEV 144
D +K N G +PIE+
Sbjct: 129 DESKLCTN-GLGMTGAVPIEI 148
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64
V++ K++AA +A++ V ++ +GIGSGSTV + L ER+ A L++ CV TS + Q
Sbjct: 24 VQQLKKMAALKALE-FVEDDMRLGIGSGSTVNEFIPLLGERV-ANGLRVTCVATSQYSEQ 81
Query: 65 LILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
L K + + LE P+L IDGADE+ + LIKGGGG L EKIVAS + + +IAD
Sbjct: 82 LCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIAD 141
Query: 125 HTKQSKNLGDRYKKGIPIEVS 145
TK K LG +PIEV+
Sbjct: 142 ETKMVKTLG---AFALPIEVN 159
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|B Chain B, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|C Chain C, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|D Chain D, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
Length = 226
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 93/161 (57%), Gaps = 10/161 (6%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60
M+N E+ K A +AV V + +G+G+GST + L RI+ E+L + +PTSF
Sbjct: 1 MSN--EDLKLKVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSF 57
Query: 61 QARQLILKNNMVLGDLETHPDLSCVIDGADEVDEN-LVLIKGGGGCLTQEKIVASCTPKL 119
+A+ L ++ + L L+ + D+ DGADEV+E L LIKGGGGC TQEKIV +
Sbjct: 58 EAKMLAMQYEIPLVTLDEY-DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEF 116
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEV---SYHTVPPILYRSG 157
V++ D +K K LG+++ IP+EV +Y V L G
Sbjct: 117 VVLVDESKLVKKLGEKFP--IPVEVIPSAYRVVIRALSEMG 155
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-phosphate Isomerase
pdb|1UJ6|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Arabinose-5-Phosphate
Length = 227
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 11/157 (7%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTS 59
M +E K+ AA+ A+ V + VG+G+GST YAV LA R++ +LK +V VPTS
Sbjct: 1 MERPLESYKKEAAHAAIA-YVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTS 59
Query: 60 FQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKL 119
+L + + L DL + IDGADE+ L LIKG GG L +EKIV +
Sbjct: 60 RATEELAKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEF 118
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRS 156
++IADHTK+ LG + +P+E+ P YR+
Sbjct: 119 IVIADHTKKVPVLG---RGPVPVEIV-----PFGYRA 147
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Ribose-5-Phosphate
Length = 227
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 11/157 (7%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTS 59
M +E K+ AA+ A+ V + VG+G+GST YAV LA R++ +LK +V VPTS
Sbjct: 1 MERPLESYKKEAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTS 59
Query: 60 FQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKL 119
+L + + L DL + IDGADE+ L LIKG GG L +EKIV +
Sbjct: 60 RATEELAKREGIPLVDLPPE-GVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEF 118
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRS 156
++IADHTK+ LG + +P+E+ P YR+
Sbjct: 119 IVIADHTKKVPVLG---RGPVPVEIV-----PFGYRA 147
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 83/141 (58%), Gaps = 4/141 (2%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIK-AEKLKIVCVPTSFQAR 63
VEE K+IAA +A+ + ++ +G+G+GST Y + L E++K E IV VPTS+QA+
Sbjct: 3 VEEMKKIAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAK 61
Query: 64 QLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIA 123
L +++++ + L+ + +DGADEVD NL LIKG G LT EKI+ +++
Sbjct: 62 LLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLV 121
Query: 124 DHTKQSKNLGDRYKKGIPIEV 144
D K L K +PIEV
Sbjct: 122 DERKLVDYLCQ--KMPVPIEV 140
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
pdb|4GMK|B Chain B, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
Length = 228
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 79/139 (56%), Gaps = 4/139 (2%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
+E K++ +AV+ + + VG+G+GSTV Y VD L +R+ E L IV V TS + +
Sbjct: 5 DELKQLVGTKAVE-WIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQ 63
Query: 66 ILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125
+V+ D++ + IDGADE+ + IKGGG L EKIVA+ + K + I D
Sbjct: 64 AKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDE 123
Query: 126 TKQSKNLGDRYKKGIPIEV 144
+K +LG + +P+EV
Sbjct: 124 SKMVDDLG---QFPLPVEV 139
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
pdb|3L7O|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
Length = 225
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 10/143 (6%)
Query: 5 VEEAKRIA---AYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ 61
+EE K+IA A Q V+D ++ VG+G+GST Y V+ + R++ E L+++ V TS +
Sbjct: 1 MEELKKIAGVRAAQYVEDGMI----VGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSR 56
Query: 62 ARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVI 121
+ L ++ + +DGADEVD N IKGGGG L EKIV + T +
Sbjct: 57 TTAQAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIW 116
Query: 122 IADHTKQSKNLGDRYKKGIPIEV 144
+ D +K LG ++ +P+EV
Sbjct: 117 VVDESKMVDTLG-AFR--LPVEV 136
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 79/145 (54%), Gaps = 15/145 (10%)
Query: 6 EEAKRI---AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLA---ERIKAEKLKIVCVPTS 59
+E KR+ AA + V DNV +G+G+GST +D LA +R + V +S
Sbjct: 12 DELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKDRYRG------AVSSS 65
Query: 60 FQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKL 119
+ + + + + DL L +DGADE+DE+ +IKGGGG LT+EKIVAS
Sbjct: 66 VATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETF 125
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEV 144
V IAD +K+ LG + +P+EV
Sbjct: 126 VCIADASKRVAMLG---QFPLPVEV 147
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 12/141 (8%)
Query: 7 EAKRIAAYQAVDDNVLNNTAVGIGSGSTV---VYAVDRLAERIKAEKLKIVCVPTSFQAR 63
E K++AA QA V + VG+GSGSTV + A+ + ++I+ V S ++
Sbjct: 5 EMKKLAA-QAALQYVKADRIVGVGSGSTVNCFIEALGTIKDKIQG------AVAASKESE 57
Query: 64 QLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIA 123
+L+ K + + + L +DGADE++ ++IKGGG LT+EKIVA+ K + I
Sbjct: 58 ELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIV 117
Query: 124 DHTKQSKNLGDRYKKGIPIEV 144
D +KQ LG + +P+EV
Sbjct: 118 DSSKQVDVLGSTFP--LPVEV 136
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268.
pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268
Length = 219
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
+E K+ + A+ V T VG+G+GST + +D L K +I +S A
Sbjct: 4 DELKKAVGWAALQ-YVQPGTIVGVGTGSTAAHFIDALG----TXKGQIEGAVSSSDASTE 58
Query: 66 ILKN-NMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
LK+ + + DL L +DGADE++ + IKGGG LT+EKI+AS K + IAD
Sbjct: 59 KLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIAD 118
Query: 125 HTKQSKNLGDRYKKGIPIEV 144
+KQ LG K +P+EV
Sbjct: 119 ASKQVDILG---KFPLPVEV 135
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1O8B|A Chain A, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate.
pdb|1O8B|B Chain B, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate
Length = 219
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
+E K+ + A+ V T VG+G+GST + +D L K +I +S A
Sbjct: 4 DELKKAVGWAALQ-YVQPGTIVGVGTGSTAAHFIDALG----TXKGQIEGAVSSSDASTE 58
Query: 66 ILKN-NMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
LK+ + + DL L +DGADE++ + IKGGG LT+EKI+AS K + IAD
Sbjct: 59 KLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIAD 118
Query: 125 HTKQSKNLGDRYKKGIPIEV 144
+KQ LG K +P+EV
Sbjct: 119 ASKQVDILG---KFPLPVEV 135
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|B Chain B, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|C Chain C, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|D Chain D, Crystal Structure Of Ribose-5-Isomerase A
pdb|4IO1|A Chain A, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
pdb|4IO1|B Chain B, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
Length = 224
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 9/140 (6%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
+E K++AA +A ++ +G+G+GSTV + ++ L +K+K V + R+L
Sbjct: 10 DELKKLAATEAAK-SITTEITLGVGTGSTVGFLIEELVNY--RDKIKTVVSSSEDSTRKL 66
Query: 66 -ILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
L ++V DL ++ IDGADE + + LIKGGG LT+EKI + K + I D
Sbjct: 67 KALGFDVV--DLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIID 124
Query: 125 HTKQSKNLGDRYKKGIPIEV 144
+K+ LG+ +PIEV
Sbjct: 125 ESKKVNTLGNF---PLPIEV 141
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENQ|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENV|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENV|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
Length = 235
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 13/142 (9%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRL---AERIKAEKLKIVCVPTSFQA 62
+E K+ A + A+ V + VG+G+GSTV + +D L +E IK V +S +
Sbjct: 21 DEMKKAAGWAALK-YVEKGSIVGVGTGSTVNHFIDALGTMSEEIKG------AVSSSVAS 73
Query: 63 RQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVII 122
+ + + + D L +DGADE++ + +IKGGG LT+EKIVA+ K + I
Sbjct: 74 TEKLEALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICI 133
Query: 123 ADHTKQSKNLGDRYKKGIPIEV 144
D TK LG +P+EV
Sbjct: 134 VDGTKAVDVLGTFP---LPVEV 152
>pdb|2AFR|A Chain A, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
pdb|2AFV|A Chain A, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
pdb|2AFV|B Chain B, The Crystal Structure Of Putative Precorrin Isomerase Cbic
In Cobalamin Biosynthesis
Length = 231
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 17/80 (21%)
Query: 3 NLVEEAKRIAAYQAVDD-------NVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK--- 52
+++E AKR + +A++ N+LN + + IG+ T + +++L I+ E +K
Sbjct: 106 DVIENAKRKNSTRAIESIQKANSFNLLNESIIVIGNAPTALLEIEKL---IRQEGIKPAL 162
Query: 53 IVCVPTSF----QARQLILK 68
IV VP F ++++ ILK
Sbjct: 163 IVGVPVGFVSAKESKESILK 182
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 101 GGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIP 141
G GC+T+++ C V + +LGD YKK +P
Sbjct: 541 GFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVP 581
>pdb|3GQC|A Chain A, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|B Chain B, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|C Chain C, Structure Of Human Rev1-Dna-Dntp Ternary Complex
pdb|3GQC|D Chain D, Structure Of Human Rev1-Dna-Dntp Ternary Complex
Length = 504
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 59 SFQARQLILKNNMVLGDL-ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTP 117
S++ARQL +KN M G + P+L V E + T SC
Sbjct: 183 SYEARQLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDE 242
Query: 118 KLVIIADHTKQSKNLGDRYKKGIPIEVSYHT 148
LV I + ++K D + + +E+ T
Sbjct: 243 ALVDITEILAETKLTPDEFANAVRMEIKDQT 273
>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
pdb|3D8X|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nadph
Dependent Thioredoxin Reductase 1
Length = 326
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 84 CVIDGADEVDEN--LVLIKGGGGCLTQEKIVASCTPKLVIIA--DHTKQSKNLGDRYKKG 139
V DGA + N L +I GG + + + K+ ++ DH + S + R +K
Sbjct: 150 AVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKN 209
Query: 140 IPIEVSYHTV 149
IE+ Y+TV
Sbjct: 210 EKIEILYNTV 219
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 31 SGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
SG VYA ++AER + E IV V SF R L
Sbjct: 274 SGGANVYAALKIAERPEMEGKTIVTVIPSFGERYL 308
>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
pdb|3ITJ|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin
Reductase 1 (trr1)
Length = 338
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 84 CVIDGADEVDEN--LVLIKGGGGCLTQEKIVASCTPKLVIIA--DHTKQSKNLGDRYKKG 139
V DGA + N L +I GG + + + K+ ++ DH + S + R +K
Sbjct: 162 AVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKN 221
Query: 140 IPIEVSYHTV 149
IE+ Y+TV
Sbjct: 222 EKIEILYNTV 231
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 30 GSGSTVVYAVDRLAERIKAEKLKI---VCVPTSFQARQLILKNNMVLGDLETHPDLSCVI 86
G+G T + + L E++K + KI + VPT R+L L+ + V+ L H +SC++
Sbjct: 68 GTGKTAAFVIPTL-EKVKPKLNKIQALIMVPT----RELALQTSQVVRTLGKHCGISCMV 122
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 31 SGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
SG VYA ++AER + E IV + SF R L
Sbjct: 295 SGGANVYAALKIAERPEMEGKTIVTIIPSFGERYL 329
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 109 EKIVASCTPKLVIIADHTKQSKNLGDRYKKGI 140
EKI+A T KL I DH K+ +L + KK I
Sbjct: 104 EKIIAVPTSKLDITFDHIKELDDLCEMLKKRI 135
>pdb|2EB0|A Chain A, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
pdb|2EB0|B Chain B, Crystal Structure Of Methanococcus Jannaschii Putative
Family Ii Inorganic Pyrophosphatase
Length = 307
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 96 LVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYH-----TVP 150
VL K G + + +++ S K +I+ DH+++S++ D + + + +H T
Sbjct: 41 FVLRKFG---VMEPELIESAKGKEIILVDHSEKSQSFDDLEEGKLIAIIDHHKVGLTTTE 97
Query: 151 PILYRS 156
PILY +
Sbjct: 98 PILYYA 103
>pdb|3V4C|A Chain A, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3V4C|B Chain B, Crystal Structure Of A Semialdehyde Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 528
Score = 26.2 bits (56), Expect = 9.8, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 74 GDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLG 133
G T+P ++ VI+GAD ++ + L +A T + +
Sbjct: 320 GQFCTNPGIAVVIEGAD-----------------ADRFTTAAVEALAKVAPQTXLTDGIA 362
Query: 134 DRYKKGIPIEVSYHTVPPILYRSGSGPDG 162
Y+ G + + V P+L SG D
Sbjct: 363 KAYRDGQARFATRNAVKPLLATESSGRDA 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,054,807
Number of Sequences: 62578
Number of extensions: 201296
Number of successful extensions: 514
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 39
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 47 (22.7 bits)