Query psy481
Match_columns 166
No_of_seqs 106 out of 1060
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 18:19:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00021 rpiA ribose 5-phosph 100.0 5E-40 1.1E-44 266.5 15.6 154 9-166 2-165 (218)
2 PRK00702 ribose-5-phosphate is 100.0 9E-40 1.9E-44 265.4 15.9 150 5-159 3-152 (220)
3 COG0120 RpiA Ribose 5-phosphat 100.0 1.6E-39 3.4E-44 263.0 16.0 158 4-166 2-170 (227)
4 PRK13978 ribose-5-phosphate is 100.0 2.8E-39 6E-44 263.0 16.5 150 6-158 5-154 (228)
5 cd01398 RPI_A RPI_A: Ribose 5- 100.0 4.4E-39 9.6E-44 260.1 16.7 153 9-165 2-165 (213)
6 PLN02384 ribose-5-phosphate is 100.0 2.2E-38 4.8E-43 261.9 16.3 152 5-158 32-184 (264)
7 KOG3075|consensus 100.0 1.2E-29 2.6E-34 207.2 13.7 156 3-158 22-178 (261)
8 PF00455 DeoRC: DeoR C termina 100.0 7E-29 1.5E-33 192.5 11.9 121 5-132 2-143 (161)
9 PRK10906 DNA-binding transcrip 99.9 5.2E-27 1.1E-31 193.9 13.1 123 4-133 73-216 (252)
10 PRK10681 DNA-binding transcrip 99.9 5E-27 1.1E-31 193.7 12.0 122 4-132 74-216 (252)
11 PRK09802 DNA-binding transcrip 99.9 1.1E-26 2.4E-31 193.5 12.9 122 4-132 88-230 (269)
12 PRK10434 srlR DNA-bindng trans 99.9 2.4E-26 5.2E-31 190.1 13.5 123 4-133 73-216 (256)
13 PRK10411 DNA-binding transcrip 99.9 2.2E-26 4.7E-31 188.9 12.9 121 4-132 75-216 (240)
14 PRK13509 transcriptional repre 99.9 4.5E-26 9.7E-31 188.0 13.0 120 4-132 75-214 (251)
15 COG1349 GlpR Transcriptional r 99.9 5.1E-26 1.1E-30 188.0 13.2 125 3-133 72-216 (253)
16 PF06026 Rib_5-P_isom_A: Ribos 99.9 1.5E-25 3.2E-30 176.1 8.4 103 53-158 1-103 (173)
17 COG1184 GCD2 Translation initi 98.4 2.9E-06 6.4E-11 72.0 11.2 124 4-132 101-237 (301)
18 PRK08535 translation initiatio 98.4 4.4E-06 9.6E-11 71.2 11.6 122 6-132 104-238 (310)
19 PRK08335 translation initiatio 98.4 9.8E-06 2.1E-10 68.2 13.4 132 5-145 92-237 (275)
20 TIGR00511 ribulose_e2b2 ribose 98.4 4.5E-06 9.7E-11 71.0 11.0 121 6-132 99-233 (301)
21 TIGR00524 eIF-2B_rel eIF-2B al 98.4 1.1E-05 2.5E-10 68.6 13.3 131 7-145 103-258 (303)
22 TIGR00512 salvage_mtnA S-methy 98.3 1.4E-05 3E-10 68.9 12.8 134 6-146 126-287 (331)
23 KOG1466|consensus 98.1 4.9E-05 1.1E-09 63.5 10.7 134 7-147 115-262 (313)
24 PRK05720 mtnA methylthioribose 98.1 8.7E-05 1.9E-09 64.3 12.5 132 7-145 131-286 (344)
25 PF01008 IF-2B: Initiation fac 98.0 3.3E-05 7.3E-10 64.3 9.1 122 6-132 91-226 (282)
26 PRK05772 translation initiatio 98.0 0.00013 2.8E-09 63.7 12.1 130 6-144 150-305 (363)
27 COG2057 AtoA Acyl CoA:acetate/ 98.0 3.2E-05 7E-10 63.1 7.4 110 6-128 5-151 (225)
28 PRK06036 translation initiatio 97.7 0.00068 1.5E-08 58.7 12.4 119 7-132 132-275 (339)
29 PRK06371 translation initiatio 97.7 0.00088 1.9E-08 57.8 12.8 118 9-132 123-265 (329)
30 PRK06372 translation initiatio 97.7 0.0005 1.1E-08 57.3 10.6 114 10-131 75-200 (253)
31 PRK08334 translation initiatio 97.6 0.0014 3E-08 57.1 13.1 133 6-145 144-299 (356)
32 TIGR02428 pcaJ_scoB_fam 3-oxoa 97.2 0.0018 3.9E-08 52.3 7.9 109 8-127 2-145 (207)
33 COG1788 AtoD Acyl CoA:acetate/ 97.2 0.0026 5.6E-08 51.9 8.5 113 8-125 3-191 (220)
34 KOG1465|consensus 97.0 0.0047 1E-07 52.8 8.9 139 9-152 149-304 (353)
35 PRK09920 acetyl-CoA:acetoacety 97.0 0.0058 1.3E-07 49.9 9.2 111 9-124 4-190 (219)
36 TIGR02429 pcaI_scoA_fam 3-oxoa 96.7 0.012 2.7E-07 48.1 8.8 45 80-125 150-194 (222)
37 PF04198 Sugar-bind: Putative 96.2 0.0056 1.2E-07 50.7 3.9 87 6-96 32-159 (255)
38 TIGR03458 YgfH_subfam succinat 96.1 0.038 8.3E-07 50.1 9.3 112 13-127 5-160 (485)
39 PF02550 AcetylCoA_hydro: Acet 95.6 0.13 2.9E-06 40.8 9.4 50 81-133 124-173 (198)
40 COG2390 DeoR Transcriptional r 95.5 0.021 4.6E-07 49.2 4.8 90 6-98 94-224 (321)
41 TIGR01584 citF citrate lyase, 95.3 0.21 4.5E-06 45.4 10.5 103 21-126 40-189 (492)
42 KOG1467|consensus 95.3 0.1 2.2E-06 47.3 8.3 116 12-132 349-477 (556)
43 cd00458 SugarP_isomerase Sugar 93.8 0.45 9.8E-06 36.8 8.0 88 22-132 19-142 (169)
44 PRK15418 transcriptional regul 93.2 0.14 3.1E-06 43.8 4.6 50 7-58 96-148 (318)
45 PF04223 CitF: Citrate lyase, 92.3 0.98 2.1E-05 40.5 8.6 102 21-125 17-165 (466)
46 COG0427 ACH1 Acetyl-CoA hydrol 92.0 0.8 1.7E-05 41.6 7.9 113 12-127 18-173 (501)
47 COG3051 CitF Citrate lyase, al 91.6 0.63 1.4E-05 41.2 6.6 109 15-126 55-211 (513)
48 COG0182 Predicted translation 90.8 4.7 0.0001 35.0 11.0 130 7-144 134-288 (346)
49 TIGR01584 citF citrate lyase, 88.7 0.75 1.6E-05 41.9 4.8 47 6-55 229-281 (492)
50 TIGR01110 mdcA malonate decarb 87.9 8.6 0.00019 35.5 11.0 104 20-125 37-183 (543)
51 PF01144 CoA_trans: Coenzyme A 87.4 1.5 3.3E-05 34.9 5.5 44 12-60 4-51 (217)
52 COG0373 HemA Glutamyl-tRNA red 86.3 9 0.0002 34.3 10.1 94 21-126 176-274 (414)
53 PF04223 CitF: Citrate lyase, 83.9 5.2 0.00011 36.0 7.4 113 9-127 209-373 (466)
54 PF02254 TrkA_N: TrkA-N domain 81.4 7.2 0.00016 27.3 6.3 61 26-90 1-71 (116)
55 PF08679 DsrD: Dissimilatory s 73.5 0.57 1.2E-05 31.4 -1.3 32 6-37 30-61 (67)
56 PF01488 Shikimate_DH: Shikima 72.3 10 0.00022 27.9 5.1 76 12-91 2-85 (135)
57 cd01399 GlcN6P_deaminase GlcN6 64.5 7.2 0.00016 31.0 3.0 32 12-44 7-40 (232)
58 PF00070 Pyr_redox: Pyridine n 56.0 24 0.00053 23.1 4.1 32 26-61 2-33 (80)
59 cd00423 Pterin_binding Pterin 55.4 51 0.0011 27.1 6.6 61 10-74 24-100 (258)
60 TIGR03458 YgfH_subfam succinat 55.2 18 0.00039 33.0 4.2 52 6-61 222-283 (485)
61 PRK10669 putative cation:proto 53.3 49 0.0011 30.2 6.8 49 24-76 418-466 (558)
62 PRK00443 nagB glucosamine-6-ph 52.2 19 0.00041 29.2 3.6 22 23-44 33-54 (261)
63 PF02824 TGS: TGS domain; Int 48.8 13 0.00029 23.7 1.8 27 21-47 5-31 (60)
64 PF05991 NYN_YacP: YacP-like N 48.2 61 0.0013 25.0 5.7 53 25-77 69-121 (166)
65 PRK13940 glutamyl-tRNA reducta 47.8 98 0.0021 27.6 7.6 68 21-91 179-252 (414)
66 COG4670 Acyl CoA:acetate/3-ket 45.4 42 0.0009 30.9 4.9 49 9-58 4-57 (527)
67 COG0634 Hpt Hypoxanthine-guani 45.3 23 0.0005 28.2 2.9 34 21-57 91-128 (178)
68 PF00156 Pribosyltran: Phospho 44.5 33 0.00072 24.0 3.5 18 28-45 97-114 (125)
69 cd05213 NAD_bind_Glutamyl_tRNA 44.1 1.9E+02 0.0042 24.3 9.6 67 22-91 177-248 (311)
70 PF01555 N6_N4_Mtase: DNA meth 44.1 21 0.00046 27.4 2.6 31 12-43 180-213 (231)
71 TIGR03249 KdgD 5-dehydro-4-deo 42.5 64 0.0014 26.9 5.4 57 3-60 54-110 (296)
72 PRK10494 hypothetical protein; 42.2 1.1E+02 0.0025 25.2 6.8 65 10-77 140-208 (259)
73 PF14572 Pribosyl_synth: Phosp 41.9 58 0.0013 26.0 4.7 18 28-45 92-109 (184)
74 PF01269 Fibrillarin: Fibrilla 41.9 98 0.0021 25.6 6.2 67 20-91 70-153 (229)
75 PF02558 ApbA: Ketopantoate re 41.6 1.2E+02 0.0026 22.0 6.3 63 26-93 1-79 (151)
76 PRK08811 uroporphyrinogen-III 40.4 49 0.0011 27.4 4.3 52 23-74 190-241 (266)
77 PF02492 cobW: CobW/HypB/UreG, 40.4 80 0.0017 24.1 5.3 94 28-129 8-127 (178)
78 PRK03562 glutathione-regulated 39.9 94 0.002 29.1 6.5 49 23-75 400-448 (621)
79 TIGR01110 mdcA malonate decarb 38.9 43 0.00093 31.1 4.0 39 6-45 222-263 (543)
80 PRK10646 ADP-binding protein; 38.8 62 0.0013 24.9 4.3 37 6-45 11-51 (153)
81 COG2230 Cfa Cyclopropane fatty 38.8 1E+02 0.0023 26.2 6.1 40 20-66 69-111 (283)
82 PF02367 UPF0079: Uncharacteri 38.1 27 0.00058 25.9 2.2 33 10-45 2-38 (123)
83 PF00732 GMC_oxred_N: GMC oxid 38.0 32 0.0007 28.0 2.9 21 25-45 2-22 (296)
84 PRK03659 glutathione-regulated 37.8 1.1E+02 0.0025 28.3 6.7 49 23-75 400-448 (601)
85 COG2242 CobL Precorrin-6B meth 37.7 2.1E+02 0.0046 22.9 7.8 77 6-90 19-111 (187)
86 COG0371 GldA Glycerol dehydrog 37.4 1E+02 0.0022 27.2 5.9 52 5-62 69-120 (360)
87 COG0329 DapA Dihydrodipicolina 37.3 70 0.0015 27.0 4.9 57 4-61 54-111 (299)
88 COG0378 HypB Ni2+-binding GTPa 37.0 57 0.0012 26.5 4.0 42 29-75 22-69 (202)
89 PRK05205 bifunctional pyrimidi 36.5 34 0.00074 26.4 2.7 25 21-45 93-121 (176)
90 COG1102 Cmk Cytidylate kinase 36.4 52 0.0011 26.2 3.6 40 30-76 10-49 (179)
91 TIGR00273 iron-sulfur cluster- 36.0 93 0.002 27.9 5.6 52 80-134 180-233 (432)
92 TIGR00284 dihydropteroate synt 35.3 1.3E+02 0.0029 27.6 6.6 62 10-75 165-233 (499)
93 cd00952 CHBPH_aldolase Trans-o 34.7 85 0.0018 26.5 5.0 56 3-59 57-113 (309)
94 COG3051 CitF Citrate lyase, al 34.5 1.2E+02 0.0026 27.3 5.9 89 10-98 255-383 (513)
95 cd00951 KDGDH 5-dehydro-4-deox 34.5 93 0.002 25.9 5.2 57 3-60 49-105 (289)
96 TIGR01012 Sa_S2_E_A ribosomal 33.9 2.3E+02 0.0049 22.8 7.0 72 5-77 44-138 (196)
97 COG0802 Predicted ATPase or ki 33.9 83 0.0018 24.3 4.3 72 5-88 7-82 (149)
98 PRK11524 putative methyltransf 33.0 53 0.0012 27.3 3.4 32 11-43 196-230 (284)
99 TIGR00460 fmt methionyl-tRNA f 32.0 2.4E+02 0.0051 23.9 7.3 61 26-89 3-86 (313)
100 PRK09162 hypoxanthine-guanine 31.9 40 0.00086 26.3 2.3 25 21-45 95-123 (181)
101 COG2242 CobL Precorrin-6B meth 31.5 1.6E+02 0.0036 23.5 5.8 60 13-74 93-157 (187)
102 PF02698 DUF218: DUF218 domain 31.2 1.3E+02 0.0027 22.1 5.0 57 8-64 55-112 (155)
103 COG1412 Uncharacterized protei 31.1 1.8E+02 0.0039 22.0 5.7 28 52-79 99-126 (136)
104 cd02042 ParA ParA and ParB of 31.0 1.7E+02 0.0036 19.7 5.5 19 111-129 57-75 (104)
105 cd00408 DHDPS-like Dihydrodipi 30.7 1.5E+02 0.0033 24.1 5.8 54 4-58 47-101 (281)
106 cd00739 DHPS DHPS subgroup of 30.7 2.2E+02 0.0048 23.5 6.7 61 11-75 25-101 (257)
107 PRK12491 pyrroline-5-carboxyla 30.3 2.1E+02 0.0046 23.6 6.6 65 26-90 5-72 (272)
108 PF02589 DUF162: Uncharacteris 30.2 23 0.00049 27.4 0.7 51 81-133 84-135 (189)
109 PRK03620 5-dehydro-4-deoxygluc 29.8 1.3E+02 0.0029 25.2 5.4 56 3-59 56-111 (303)
110 TIGR03778 VPDSG_CTERM VPDSG-CT 29.7 46 0.00099 18.2 1.6 14 30-43 3-16 (26)
111 PF08241 Methyltransf_11: Meth 29.7 54 0.0012 21.1 2.4 34 27-67 3-36 (95)
112 PRK00129 upp uracil phosphorib 29.5 86 0.0019 24.9 4.0 25 21-45 122-150 (209)
113 PRK11613 folP dihydropteroate 29.4 2.2E+02 0.0048 24.0 6.6 60 11-74 39-114 (282)
114 PF04900 Fcf1: Fcf1; InterPro 29.3 1E+02 0.0022 21.4 3.9 42 31-78 50-93 (101)
115 COG1136 SalX ABC-type antimicr 29.2 1.7E+02 0.0037 24.0 5.7 54 8-66 147-209 (226)
116 TIGR01203 HGPRTase hypoxanthin 28.9 57 0.0012 25.0 2.7 17 29-45 94-110 (166)
117 PRK14694 putative mercuric red 28.8 2.1E+02 0.0045 25.3 6.7 48 23-74 178-236 (468)
118 PF13738 Pyr_redox_3: Pyridine 28.7 68 0.0015 24.2 3.2 35 21-59 165-199 (203)
119 PF03807 F420_oxidored: NADP o 28.7 1.7E+02 0.0038 19.3 5.0 66 26-92 2-72 (96)
120 cd00950 DHDPS Dihydrodipicolin 28.6 1.8E+02 0.0039 23.9 5.8 56 3-59 49-105 (284)
121 cd05564 PTS_IIB_chitobiose_lic 28.4 1.4E+02 0.0031 20.7 4.5 36 27-62 4-39 (96)
122 PF07021 MetW: Methionine bios 28.1 3.2E+02 0.0069 22.0 7.8 96 17-126 8-112 (193)
123 PTZ00149 hypoxanthine phosphor 27.9 56 0.0012 27.1 2.7 25 21-45 148-176 (241)
124 PRK13512 coenzyme A disulfide 27.6 2.3E+02 0.005 24.8 6.7 49 22-74 147-207 (438)
125 PRK15423 hypoxanthine phosphor 27.5 62 0.0014 25.3 2.8 25 21-45 90-118 (178)
126 PRK06988 putative formyltransf 27.4 2.8E+02 0.0062 23.5 7.0 61 26-89 5-85 (312)
127 PRK13699 putative methylase; P 27.3 80 0.0017 25.5 3.5 28 12-39 152-182 (227)
128 cd08242 MDR_like Medium chain 27.2 3.4E+02 0.0073 22.0 8.6 65 21-89 153-222 (319)
129 TIGR00201 comF comF family pro 26.9 67 0.0014 25.0 2.9 34 21-57 150-187 (190)
130 PRK07239 bifunctional uroporph 26.9 1.2E+02 0.0026 26.1 4.7 50 24-73 202-257 (381)
131 PRK11595 DNA utilization prote 26.9 66 0.0014 25.9 2.9 25 21-45 185-213 (227)
132 PTZ00271 hypoxanthine-guanine 26.6 64 0.0014 26.1 2.7 25 21-45 116-144 (211)
133 PF13344 Hydrolase_6: Haloacid 26.4 1.4E+02 0.003 20.8 4.2 34 36-73 20-58 (101)
134 cd06259 YdcF-like YdcF-like. Y 26.2 2.6E+02 0.0056 20.3 6.0 54 11-64 55-109 (150)
135 PRK00005 fmt methionyl-tRNA fo 26.0 3.2E+02 0.007 23.0 7.1 61 26-89 3-86 (309)
136 KOG4777|consensus 26.0 79 0.0017 27.1 3.2 113 31-163 13-143 (361)
137 PRK09496 trkA potassium transp 25.9 2.2E+02 0.0048 24.7 6.3 47 25-75 2-49 (453)
138 COG1924 Activator of 2-hydroxy 25.9 31 0.00067 30.7 0.8 19 21-39 132-150 (396)
139 PF00701 DHDPS: Dihydrodipicol 25.7 1.2E+02 0.0027 24.9 4.4 55 3-58 50-105 (289)
140 PRK04147 N-acetylneuraminate l 25.7 1.5E+02 0.0032 24.7 4.9 56 3-59 53-109 (293)
141 PF08284 RVP_2: Retroviral asp 25.6 33 0.00071 25.6 0.8 20 26-45 34-53 (135)
142 TIGR02053 MerA mercuric reduct 25.5 2.7E+02 0.0059 24.4 6.8 33 23-59 166-198 (463)
143 PRK05948 precorrin-2 methyltra 25.3 3.8E+02 0.0081 21.9 7.4 62 11-75 80-147 (238)
144 PRK10834 vancomycin high tempe 25.1 3.6E+02 0.0078 22.3 7.0 67 8-76 98-167 (239)
145 TIGR00683 nanA N-acetylneurami 25.1 1.9E+02 0.0042 24.1 5.5 54 4-58 51-105 (290)
146 cd00954 NAL N-Acetylneuraminic 25.0 2.2E+02 0.0047 23.6 5.8 30 4-34 51-80 (288)
147 PRK12770 putative glutamate sy 25.0 2.9E+02 0.0063 23.3 6.6 50 23-75 172-229 (352)
148 PF02353 CMAS: Mycolic acid cy 24.9 3.1E+02 0.0067 22.8 6.7 39 21-66 60-101 (273)
149 cd06578 HemD Uroporphyrinogen- 24.9 1.9E+02 0.0042 22.1 5.2 51 25-75 175-225 (239)
150 PF02602 HEM4: Uroporphyrinoge 24.7 1.1E+02 0.0025 23.7 3.9 51 23-74 168-218 (231)
151 COG4098 comFA Superfamily II D 24.6 3.9E+02 0.0085 24.0 7.3 113 9-127 102-245 (441)
152 TIGR01091 upp uracil phosphori 24.4 75 0.0016 25.3 2.8 25 21-45 120-148 (207)
153 TIGR00150 HI0065_YjeE ATPase, 24.4 1.7E+02 0.0037 21.8 4.5 35 8-45 7-45 (133)
154 PRK05249 soluble pyridine nucl 24.1 2.4E+02 0.0051 24.7 6.1 34 23-60 175-208 (461)
155 TIGR03169 Nterm_to_SelD pyridi 24.1 4.2E+02 0.0091 22.2 7.5 52 24-75 146-210 (364)
156 PF02073 Peptidase_M29: Thermo 23.4 3.2E+02 0.0069 24.2 6.7 59 7-66 5-67 (398)
157 cd08177 MAR Maleylacetate redu 23.2 4.6E+02 0.01 22.2 8.6 41 22-67 77-117 (337)
158 KOG0523|consensus 23.2 1.3E+02 0.0028 28.4 4.3 71 24-95 506-586 (632)
159 PRK05928 hemD uroporphyrinogen 23.1 2.1E+02 0.0045 22.3 5.1 52 23-74 177-229 (249)
160 PRK07246 bifunctional ATP-depe 23.1 2.1E+02 0.0046 27.8 6.0 55 8-66 249-307 (820)
161 PF02887 PK_C: Pyruvate kinase 23.0 85 0.0018 22.3 2.6 45 26-76 21-66 (117)
162 TIGR01496 DHPS dihydropteroate 22.9 3.8E+02 0.0083 22.0 6.8 61 11-75 24-100 (257)
163 PRK06327 dihydrolipoamide dehy 22.7 3.3E+02 0.0072 24.1 6.8 33 23-59 183-215 (475)
164 PF04977 DivIC: Septum formati 22.6 1E+02 0.0023 19.9 2.8 23 6-29 54-76 (80)
165 PRK11749 dihydropyrimidine deh 22.6 3.3E+02 0.0071 24.0 6.7 51 22-75 272-330 (457)
166 TIGR03286 methan_mark_15 putat 22.6 42 0.00091 30.0 1.1 19 21-39 141-159 (404)
167 PLN00203 glutamyl-tRNA reducta 22.5 2.9E+02 0.0063 25.4 6.5 65 23-90 266-338 (519)
168 TIGR01292 TRX_reduct thioredox 22.0 2.3E+02 0.0049 22.6 5.2 50 21-74 139-195 (300)
169 PRK03170 dihydrodipicolinate s 21.9 2.8E+02 0.006 22.9 5.9 55 4-59 51-106 (292)
170 COG1954 GlpP Glycerol-3-phosph 21.8 29 0.00063 27.6 -0.1 50 116-165 98-148 (181)
171 cd08254 hydroxyacyl_CoA_DH 6-h 21.7 3.2E+02 0.0069 22.1 6.1 48 21-71 163-210 (338)
172 COG1889 NOP1 Fibrillarin-like 21.7 76 0.0016 26.2 2.2 40 21-66 74-116 (231)
173 PRK10537 voltage-gated potassi 21.6 4.9E+02 0.011 23.0 7.6 35 21-59 238-272 (393)
174 TIGR01438 TGR thioredoxin and 21.3 3.9E+02 0.0085 23.9 7.0 34 22-59 179-212 (484)
175 PRK09496 trkA potassium transp 20.9 2.5E+02 0.0054 24.3 5.6 49 22-74 230-280 (453)
176 PF04430 DUF498: Protein of un 20.8 74 0.0016 22.6 1.9 39 23-63 53-91 (110)
177 PRK09590 celB cellobiose phosp 20.7 2.5E+02 0.0055 20.0 4.7 36 26-61 5-40 (104)
178 PF02938 GAD: GAD domain; Int 20.6 1.3E+02 0.0028 20.8 3.0 25 6-33 63-87 (95)
179 PRK03092 ribose-phosphate pyro 20.3 1.9E+02 0.0042 24.5 4.6 55 21-78 199-262 (304)
180 PRK05752 uroporphyrinogen-III 20.3 2.4E+02 0.0051 22.8 5.0 50 24-74 183-232 (255)
181 PRK06522 2-dehydropantoate 2-r 20.3 4.4E+02 0.0095 21.3 6.7 63 26-92 3-77 (304)
182 TIGR00674 dapA dihydrodipicoli 20.3 3.2E+02 0.007 22.5 5.9 33 3-36 47-79 (285)
183 PF13638 PIN_4: PIN domain; PD 20.2 1.2E+02 0.0025 21.7 2.8 39 36-76 94-132 (133)
184 COG2932 Predicted transcriptio 20.2 58 0.0012 25.8 1.3 28 20-59 136-163 (214)
185 PRK13748 putative mercuric red 20.0 3.6E+02 0.0079 24.3 6.6 49 22-74 269-328 (561)
No 1
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=100.00 E-value=5e-40 Score=266.53 Aligned_cols=154 Identities=44% Similarity=0.630 Sum_probs=140.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEEEEc
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDG 88 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~af~g 88 (166)
|++||++|++ +|++||+||||+|||+.+++++|.++.+.+++++++||||+.++.+|.+.|++++.+.+..++|+||+|
T Consensus 2 K~~IA~~A~~-~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iDiafdG 80 (218)
T TIGR00021 2 KRAAAEAAAE-YVEDGMVVGLGTGSTVAYFIEALGERVKQEGLDIVGVPTSKQTAELARELGIPLSSLDEVPELDLAIDG 80 (218)
T ss_pred HHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHhhhccCCCEEEEeCCHHHHHHHHHCCCCEEcHhHCCccCEEEEC
Confidence 8999999999 999999999999999999999998753323347999999999999998889999999888799999999
Q ss_pred cccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC----------
Q psy481 89 ADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS---------- 158 (166)
Q Consensus 89 ad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~---------- 158 (166)
||+||+++++++++++++++||+++++|+++|+|+|+|||+++|++ +|+||||.|++|.+|.++|.+
T Consensus 81 aD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg~---~plPvEV~p~~~~~v~~~l~~~g~~~~~R~~ 157 (218)
T TIGR00021 81 ADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKLVDKLGK---FPLPVEVVPFAWKAVARKLEKLGGEPTLRQG 157 (218)
T ss_pred CCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEchhhhcccCC---CCccEEECccHHHHHHHHHHHcCCCcEEeec
Confidence 9999999999999999999999999999999999999999999984 799999999999999999964
Q ss_pred CCCCCccC
Q psy481 159 GPDGQVKS 166 (166)
Q Consensus 159 ~~~~~~~~ 166 (166)
+++||+++
T Consensus 158 ~~~~p~vT 165 (218)
T TIGR00021 158 NKGGPVVT 165 (218)
T ss_pred CCCCcEEC
Confidence 26677753
No 2
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=9e-40 Score=265.38 Aligned_cols=150 Identities=38% Similarity=0.505 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccE
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSC 84 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~ 84 (166)
+.++|++||++|++ +|+|||+||||+|||+.+++++|.++.+.+ +++++||||+.++.++.+.|++++.+.++.++|+
T Consensus 3 ~~~~K~~IA~~Aa~-lI~dg~~IgLgsGST~~~l~~~L~~~~~~~-~~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iD~ 80 (220)
T PRK00702 3 QDELKKAAAEAAAE-YVEDGMIVGLGTGSTAAYFIDALGERVKEG-LIIGGVPTSEASTELAKELGIPLFDLNEVDSLDL 80 (220)
T ss_pred HHHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHhhhccC-CCEEEECCcHHHHHHHHhCCCeEEcHHHCCccCE
Confidence 56789999999999 999999999999999999999998753212 4699999999999999889999999998879999
Q ss_pred EEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcCC
Q psy481 85 VIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG 159 (166)
Q Consensus 85 af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~~ 159 (166)
+|+|||+||+++++++++++++++||+++++|+++|+|+|+|||+.+|++ +|+||||.|++|++|.++|.+.
T Consensus 81 afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~~~vil~D~sK~v~~lg~---~~lPvEV~p~~~~~v~~~l~~~ 152 (220)
T PRK00702 81 YVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVDESKLVDVLGK---FPLPVEVIPFARSAVARELEKL 152 (220)
T ss_pred EEECCCeECCCCCcEECcHHHHHHHHHHHHhcCcEEEEEEcchhhhhcCC---CCccEEECccHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999985 7999999999999999999753
No 3
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=262.98 Aligned_cols=158 Identities=41% Similarity=0.606 Sum_probs=147.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
.+.+.|+..|++|++ +|++||+||||||||+.+|+++|.++.+.+ ++++.||+|.+++.+|.+.|+++..+....++|
T Consensus 2 ~~~~~K~~aa~~A~~-~v~~gmviGlGTGST~~~fI~~Lg~~~~~e-~~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~lD 79 (227)
T COG0120 2 DQDELKKAAAKAALE-YVKDGMVIGLGTGSTAAYFIEALGRRVKGE-LDIGGVPTSFQTEELARELGIPVSSLNEVDSLD 79 (227)
T ss_pred chHHHHHHHHHHHHH-HhcCCCEEEEcCcHHHHHHHHHHHHhhccC-ccEEEEeCCHHHHHHHHHcCCeecCccccCccc
Confidence 567899999999999 999999999999999999999998643222 589999999999999999999999999998899
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhc------
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSG------ 157 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~------ 157 (166)
+||||||+||++++++||+|+|+++||+++++|+++|+++|+||++++||. ||+||||.|++|.+|.+++.
T Consensus 80 l~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG~---fplPVEVip~a~~~v~r~l~~~g~~~ 156 (227)
T COG0120 80 LAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLGK---FPLPVEVIPFARSAVLRKLEKLGGKP 156 (227)
T ss_pred eEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcCC---CCcCEEEchhHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999999999984 89999999999999999994
Q ss_pred -----CCCCCCccC
Q psy481 158 -----SGPDGQVKS 166 (166)
Q Consensus 158 -----~~~~~~~~~ 166 (166)
..++|||++
T Consensus 157 ~lR~~~~k~GpviT 170 (227)
T COG0120 157 TLREGEGKDGPVIT 170 (227)
T ss_pred cccccccCCCCEEe
Confidence 678999863
No 4
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=2.8e-39 Score=263.05 Aligned_cols=150 Identities=30% Similarity=0.454 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEE
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCV 85 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~a 85 (166)
.+.|+++|++|++ ||++||+||||||||+.+++++|.++++.+.+++++|++|..++.+|.++|+++..+.+..++|+|
T Consensus 5 ~~~K~~aa~~A~~-~V~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~~t~~~a~~~Gipl~~l~~~~~iDia 83 (228)
T PRK13978 5 KALKLMTLNDVLS-QINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEINDVDHIDLA 83 (228)
T ss_pred HHHHHHHHHHHHH-hCCCCCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCcHHHHHHHHHcCCcEechhhCCceeEE
Confidence 4579999999999 999999999999999999999999886544567999999999999999999999999998899999
Q ss_pred EEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC
Q psy481 86 IDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS 158 (166)
Q Consensus 86 f~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~ 158 (166)
|||||+||+++++++|+|+++++||+++++|+++|+++|+||++++|+. ++|+||||.|++|++|.++|.+
T Consensus 84 iDGADevd~~lnlIKGgGgal~rEKiva~~A~~~iii~D~sK~v~~Lg~--~~plPVEV~p~~~~~v~~~l~~ 154 (228)
T PRK13978 84 IDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGE--TFKLPVEVDKFNWYHILRKIES 154 (228)
T ss_pred EecCceecCCccEEecCcHHHHHHHHHHHhcCcEEEEEeCcceecccCC--CCCeEEEEcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 2799999999999999999974
No 5
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=100.00 E-value=4.4e-39 Score=260.12 Aligned_cols=153 Identities=45% Similarity=0.647 Sum_probs=138.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEEEEc
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDG 88 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~af~g 88 (166)
|++||++|++ +|++||+||||+|||+.+++++|.++...+..++++||||+.++.++.+.+++++.+++.+++|++|+|
T Consensus 2 K~~IA~~A~~-~I~~g~~I~ldsGST~~~l~~~L~~~~~~~~~~itvVTnS~~~a~~l~~~~i~vi~lg~~~~~D~af~G 80 (213)
T cd01398 2 KRAAARAAVD-YVEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAIDG 80 (213)
T ss_pred HHHHHHHHHH-hCCCCCEEEECchHHHHHHHHHHHHhhhccCCCEEEEeCcHHHHHHHHhCCCeEEeCCCccccCEEEEC
Confidence 8999999999 999999999999999999999998652211237999999999999887789999999987899999999
Q ss_pred cccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcCC---------
Q psy481 89 ADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG--------- 159 (166)
Q Consensus 89 ad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~~--------- 159 (166)
||++|+++++++++++++++||+++++|+++|+|+|||||+++|++ +|+||||.|++|.+|.++|.+.
T Consensus 81 ad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~~---~~lPvEV~p~~~~~v~~~l~~~g~~~~~R~~ 157 (213)
T cd01398 81 ADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGE---FPLPVEVVPFAWSYVARELEKLGGKPVLREG 157 (213)
T ss_pred CCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCCC---CCeeEEEChhhHHHHHHHHHHcCCCcEEccc
Confidence 9999998888899999999999998899999999999999999985 7999999999999999999643
Q ss_pred --CCCCcc
Q psy481 160 --PDGQVK 165 (166)
Q Consensus 160 --~~~~~~ 165 (166)
++||++
T Consensus 158 ~~~~~p~~ 165 (213)
T cd01398 158 SGKGGPVV 165 (213)
T ss_pred CCCCCcEE
Confidence 567775
No 6
>PLN02384 ribose-5-phosphate isomerase
Probab=100.00 E-value=2.2e-38 Score=261.93 Aligned_cols=152 Identities=39% Similarity=0.585 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCC-CeEEEcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKL-KIVCVPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~-~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
+.+.|+++|++|++ ||++||+||||||||+.+++++|.++++.+.+ ++++|++|..++.+|.+.|+++..+.+..++|
T Consensus 32 ~~~~K~~aA~~A~~-~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T~~~a~~~GIpl~~l~~v~~iD 110 (264)
T PLN02384 32 QDELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVD 110 (264)
T ss_pred HHHHHHHHHHHHHH-hccCCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHHHHHHHHcCCcEeccccCCccc
Confidence 45679999999999 99999999999999999999999988654433 49999999999999999999999999988999
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS 158 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~ 158 (166)
+||||||+||+++++++|+|+++++||+++.+|+++|+++|+||++++|+.. ++|+||||.|++|.+|.++|.+
T Consensus 111 iaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V~~Lg~~-~~plPVEV~p~a~~~v~~~L~~ 184 (264)
T PLN02384 111 LAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGS-GLAMPVEVVPFCWKFTAEKLQS 184 (264)
T ss_pred EEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCcceecccCCC-CCCEEEEECccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999842 1799999999999999999975
No 7
>KOG3075|consensus
Probab=99.97 E-value=1.2e-29 Score=207.23 Aligned_cols=156 Identities=51% Similarity=0.738 Sum_probs=145.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcC-CCeEEEcChHHHHHHHHhCCCeeeeCCCCCc
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK-LKIVCVPTSFQARQLILKNNMVLGDLETHPD 81 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~-~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~ 81 (166)
..+.+.|++.|++|.+.++++|++||||||||+.+.+++|.+.+..++ .+++.|+.|..++.++.+.|+++..+.....
T Consensus 22 ~~~e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~~d~hp~ 101 (261)
T KOG3075|consen 22 SPQEEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSDLDSHPV 101 (261)
T ss_pred CchHHHHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchhhHHHHHhcCCccccCCCCce
Confidence 467889999999999977888999999999999999999988765455 4799999999999999999999999999999
Q ss_pred ccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC
Q psy481 82 LSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS 158 (166)
Q Consensus 82 ~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~ 158 (166)
+|++|+|||++|+++++++++|++.++||++.-+|+++|+++|+.|+.+.|+..++..+||||+|++|..+.++|.+
T Consensus 102 iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~~~l~~ 178 (261)
T KOG3075|consen 102 IDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSE 178 (261)
T ss_pred eEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999988887789999999999999999955
No 8
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=99.96 E-value=7e-29 Score=192.53 Aligned_cols=121 Identities=19% Similarity=0.227 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhC-CCeeeeCCC-----
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKN-NMVLGDLET----- 78 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~-~i~v~~l~~----- 78 (166)
+.++|++||++|++ +|+|||+||||+|||+++++++|.++ .+++|||||+.++..|.+. +++++.++.
T Consensus 2 n~~~K~~IA~~A~~-~I~~~~~Ifld~GtT~~~la~~L~~~-----~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~ 75 (161)
T PF00455_consen 2 NAEEKRAIARKAAS-LIEDGDTIFLDSGTTTLELAKYLPDK-----KNLTVVTNSLPIANELSENPNIEVILLGGEVNPK 75 (161)
T ss_pred CHHHHHHHHHHHHH-hCCCCCEEEEECchHHHHHHHHhhcC-----CceEEEECCHHHHHHHHhcCceEEEEeCCEEEcC
Confidence 57899999999999 99999999999999999999999875 3899999999999999755 688877631
Q ss_pred --------------CCcccEEEEccccccCCCccccCCc-chHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 --------------HPDLSCVIDGADEVDENLVLIKGGG-GCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 --------------~~~~D~af~gad~vd~~~~~~~~~~-~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.+++|++|+|++|++++++++.... ++.++ +.|+++|+++|+|+|||||+++-
T Consensus 76 ~~~~~G~~a~~~l~~~~~d~afi~~~gi~~~~G~~~~~~~~a~vk-~~~~~~s~~~ill~D~sKf~~~~ 143 (161)
T PF00455_consen 76 SLSFVGPIALEALRQFRFDKAFIGADGISEEGGLTTSDEEEAEVK-RAMIENSKQVILLADSSKFGRNS 143 (161)
T ss_pred CCcEECchHHHHHHhhccceEEecccEecCCCccccchHHHHHHH-HHHHHhcCeEEEEeChhhcCCee
Confidence 1489999999999999888865444 56665 77779999999999999998774
No 9
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=99.95 E-value=5.2e-27 Score=193.86 Aligned_cols=123 Identities=16% Similarity=0.178 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCCC----
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLET---- 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~~---- 78 (166)
.+.++|++||++|++ +|+|||+||||+|||+++++++|.++ .++||||||+.++..|. .++++++.++.
T Consensus 73 ~~~~~K~~IA~~Aa~-~I~~g~tIflD~GtT~~~la~~L~~~-----~~ltVvTNsl~ia~~l~~~~~~~villGG~~~~ 146 (252)
T PRK10906 73 TQTEEKERIARKVAS-QIPNGATLFIDIGTTPEAVAHALLNH-----SNLRIVTNNLNVANTLMAKEDFRIILAGGELRS 146 (252)
T ss_pred hcHHHHHHHHHHHHh-hCCCCCEEEEcCcHHHHHHHHHhcCC-----CCcEEEECcHHHHHHHhhCCCCEEEEECCEEec
Confidence 467899999999999 99999999999999999999999763 27999999999999885 56788877641
Q ss_pred ---------------CCcccEEEEccccccCCCccccCC-cchHHHHHHHHhhCCceEEEEcCCCcccccC
Q psy481 79 ---------------HPDLSCVIDGADEVDENLVLIKGG-GGCLTQEKIVASCTPKLVIIADHTKQSKNLG 133 (166)
Q Consensus 79 ---------------~~~~D~af~gad~vd~~~~~~~~~-~~a~~~ek~i~~~A~~~illaD~sKf~~~l~ 133 (166)
.+++|++|+||+|+|++++++... .++.++ |.|+++|+++|+|+|||||+++-.
T Consensus 147 ~~~~~~G~~a~~~l~~~~~d~afi~~~Gi~~~~G~t~~~~~ea~~k-~~~~~~a~~~illaD~sKf~~~~~ 216 (252)
T PRK10906 147 RDGGIIGEATLDFISQFRLDFGILGISGIDSDGSLLEFDYHEVRTK-RAIIENSRHVMLVVDHSKFGRNAM 216 (252)
T ss_pred CCCccCCHHHHHHHHhccCCEEEEcCCEECCCCCcCCCCHHHHHHH-HHHHHhcCcEEEEEccchhCCcce
Confidence 148999999999999888775544 456665 677789999999999999988753
No 10
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=99.94 E-value=5e-27 Score=193.72 Aligned_cols=122 Identities=18% Similarity=0.060 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCCC----
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLET---- 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~~---- 78 (166)
.+.++|++||++|++ +|+|||+||||+|||++++|++|.+. .++||||||+.++.+|. ..+++++.++.
T Consensus 74 ~~~~~K~~IA~~Aa~-lI~~g~tIflD~GtT~~~la~~L~~~-----~~ltvvTnsl~i~~~l~~~~~~~villGG~~~~ 147 (252)
T PRK10681 74 RLVEEKRRAAQLAAT-LVEPNQTLFFDCGTTTPWIIEAIDNE-----LPFTAVCYSLNTFLALQEKPHCRAILCGGEFHA 147 (252)
T ss_pred hCHHHHHHHHHHHHh-hcCCCCEEEEECCccHHHHHHhcCCC-----CCeEEEECCHHHHHHHhhCCCCEEEEECcEEec
Confidence 456889999999999 99999999999999999999999763 27999999999999886 56788877641
Q ss_pred ---------------CCcccEEEEccccccCCCcccc-CCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 ---------------HPDLSCVIDGADEVDENLVLIK-GGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 ---------------~~~~D~af~gad~vd~~~~~~~-~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.+++|++|+||+|+|++++++. ...++.++ |.|+++|+++|+|+|||||++.-
T Consensus 148 ~~~~~~G~~~~~~l~~~~~D~afig~~gi~~~~G~~~~~~~ea~vk-~~~~~~a~~~illaD~sKf~~~~ 216 (252)
T PRK10681 148 SNAIFKPLDFQQTLDNICPDIAFYSAAGVHVSKGATCFNLEELPVK-HWAMAMAQKHVLVVDHSKFGKVR 216 (252)
T ss_pred CcceeeCHHHHHHHHhhCCCEEEEeCceecCCCCcCCCCHHHHHHH-HHHHHhhCcEEEEEcccccCcee
Confidence 1489999999999998887755 44456665 77779999999999999998774
No 11
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=99.94 E-value=1.1e-26 Score=193.52 Aligned_cols=122 Identities=14% Similarity=0.194 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCCC----
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLET---- 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~~---- 78 (166)
.+.++|++||++|++ +|+|||+||||+|||+++++++|.++ .++||||||+.++..|. ..+++++.++.
T Consensus 88 ~~~~~K~~IA~~Aa~-~I~dgd~Ifld~GtT~~~la~~L~~~-----~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~ 161 (269)
T PRK09802 88 LNTAMKRSVAKAAVE-LIQPGHRVILDSGTTTFEIARLMRKH-----TDVIAMTNGMNVANALLEAEGVELLMTGGHLRR 161 (269)
T ss_pred hCHHHHHHHHHHHHh-hCCCCCEEEECCchHHHHHHHhcCcC-----CCeEEEeCCHHHHHHHHhCCCCEEEEECCEEec
Confidence 456899999999999 99999999999999999999999764 26999999999999886 56788877631
Q ss_pred ---------------CCcccEEEEccccccCCCccccCC-cchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 ---------------HPDLSCVIDGADEVDENLVLIKGG-GGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 ---------------~~~~D~af~gad~vd~~~~~~~~~-~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.+++|++|+||+|++.+++++... .++.++ +.|+++|+++|+|+|||||++.-
T Consensus 162 ~~~~~~G~~a~~~l~~~~~d~afig~~gi~~~~G~t~~~~~ea~~k-r~~i~~s~~~ill~D~sKf~~~~ 230 (269)
T PRK09802 162 QSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLN-RRMCEVAERIIVVTDSSKFNRSS 230 (269)
T ss_pred CCCceECHHHHHHHHhccCCEEEEcCceecCCCCcCCCCHHHHHHH-HHHHHHcCcEEEEEeccccCCcc
Confidence 148999999999999988876544 456665 77779999999999999998774
No 12
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=99.94 E-value=2.4e-26 Score=190.13 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=104.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHh-CC-CeeeeCCC---
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILK-NN-MVLGDLET--- 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~-~~-i~v~~l~~--- 78 (166)
.+.++|++||++|++ +|+|||+||||+|||+++++++|.+. .++||||||+.++..|.+ .+ ++++.++.
T Consensus 73 ~~~~~K~~IA~~Aa~-~I~~g~tIfld~GtT~~~la~~L~~~-----~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~ 146 (256)
T PRK10434 73 INTHKKELIAEAAVS-LIHDGDSIILDAGSTVLQMVPLLSRF-----NNITVMTNSLHIVNALSELDNEQTILMPGGTFR 146 (256)
T ss_pred hhHHHHHHHHHHHHh-hCCCCCEEEEcCcHHHHHHHHHhccC-----CCeEEEECCHHHHHHHhhCCCCCEEEEECCEEe
Confidence 457899999999999 99999999999999999999999864 269999999999998864 44 67776631
Q ss_pred ----------------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccC
Q psy481 79 ----------------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLG 133 (166)
Q Consensus 79 ----------------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~ 133 (166)
.+++|++|+||+|++.+++++.....+.++ +.|+++|+++|+|+||+||++.-.
T Consensus 147 ~~~~~~~G~~a~~~l~~~~~D~afi~~~gi~~~~G~t~~~~~~~~k-~~~~~~a~~~illaD~sKf~~~~~ 216 (256)
T PRK10434 147 KKSASFHGQLAENAFEHFTFDKLFIGTDGIDLNAGVTTFNEVYTVS-KAMCNAAREIILMADSSKFGRKSP 216 (256)
T ss_pred CCCCeEECHHHHHHHHhCcCCEEEEcCceecCCCCcCCCCHHHHHH-HHHHHHcCcEEEEECCcccCCcee
Confidence 148999999999999888886555556655 788899999999999999988753
No 13
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=99.94 E-value=2.2e-26 Score=188.91 Aligned_cols=121 Identities=13% Similarity=0.123 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCCC----
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLET---- 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~~---- 78 (166)
.+.++|++||++|++ +|+|||+||||+|||+.+++++|.++ ++||||||+.++..|. .++++++.++.
T Consensus 75 ~~~~~K~~IA~~Aa~-lI~~gd~Ifld~GtT~~~l~~~L~~~------~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~ 147 (240)
T PRK10411 75 SHYAHKADIAREALA-WIEEGMVIALDASSTCWYLARQLPDI------NIQVFTNSHPICQELGKRERIQLISSGGTLER 147 (240)
T ss_pred hHHHHHHHHHHHHHH-hCCCCCEEEEcCcHHHHHHHHhhCCC------CeEEEeCCHHHHHHHhcCCCCEEEEECCEEeC
Confidence 467899999999999 99999999999999999999999764 7999999999999886 57788876631
Q ss_pred ---------------CCcccEEEEccccccCCCccccCCc-chHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 ---------------HPDLSCVIDGADEVDENLVLIKGGG-GCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 ---------------~~~~D~af~gad~vd~~~~~~~~~~-~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.+++|++|+||+|++.++++..... ++.++ +.++++|+++|+|+|||||++.-
T Consensus 148 ~~~~~~G~~a~~~l~~~~~d~afis~~gi~~~~G~~~~~~~ea~~k-~~~~~~a~~~ill~D~sKf~~~~ 216 (240)
T PRK10411 148 KYGCYVNPSLISQLKSLEIDLFIFSCEGIDSSGALWDSNAINADYK-SMLLKRAAQSLLLIDKSKFNRSG 216 (240)
T ss_pred CCCceECHHHHHHHHhcCCCEEEEeceeECCCCCcccCCHHHHHHH-HHHHHHhCcEEEEEeccccCCcc
Confidence 1489999999999998888865444 45554 78889999999999999998764
No 14
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=99.94 E-value=4.5e-26 Score=188.04 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCCC----
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLET---- 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~~---- 78 (166)
.+.++|++||++|++ +|+|||+||||+|||+++++++|.++ ++||||||+.++..|. ..+++++.++.
T Consensus 75 ~~~~~K~~IA~~Aa~-~I~~g~~Ifld~GsT~~~la~~L~~~------~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~ 147 (251)
T PRK13509 75 QNHDEKVRIAKAASQ-LCNPGESVVINCGSTAFLLGRELCGK------PVQIITNYLPLANYLIDQEHDSVIIMGGQYNK 147 (251)
T ss_pred hCHHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHhCCC------CeEEEeCCHHHHHHHHhCCCCEEEEECCeEcC
Confidence 356799999999999 99999999999999999999999754 6999999999999886 56678776631
Q ss_pred --------------CCcccEEEEccccccCCCccccCCc-chHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 --------------HPDLSCVIDGADEVDENLVLIKGGG-GCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 --------------~~~~D~af~gad~vd~~~~~~~~~~-~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.+++|++|+||+|++.+ +++.... ++.++ +.|+++|+++|+|+|||||++.-
T Consensus 148 ~~~~~~G~~~~~l~~~~~d~aFig~~gi~~~-G~~~~~~~e~~~k-~~~~~~s~~~illaDssKfg~~~ 214 (251)
T PRK13509 148 SQSITLSPQGSENSLYAGHWMFTSGKGLTAD-GLYKTDMLTAMAE-QKMLSVVGKLVVLVDSSKIGERA 214 (251)
T ss_pred CcceeECHHHHHHHhCcCCEEEECCCcCCCC-cCCCCCHHHHHHH-HHHHHHhCcEEEEEcccccCcee
Confidence 14899999999999965 5654443 46655 77779999999999999998874
No 15
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=99.94 E-value=5.1e-26 Score=188.03 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=105.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCCC---
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLET--- 78 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~~--- 78 (166)
..+.++|++||++|++ +|+|||+||||+|||++++|++|.+. .++||||||++++..|. +.++.++.++.
T Consensus 72 ~~~~~eK~~IA~~Aa~-lI~~g~~ifld~GTT~~~la~~L~~~-----~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~ 145 (253)
T COG1349 72 ALNTEEKRAIAKAAAT-LIEDGDTIFLDAGTTTLALARALPDD-----NNLTVITNSLNIAAALLEKPNIEVILLGGTVR 145 (253)
T ss_pred HhhHHHHHHHHHHHHh-hCCCCCEEEECCCcHHHHHHHHhCcC-----CCeEEEeCCHHHHHHHHhCCCCeEEEeCcEEE
Confidence 3567899999999999 99999999999999999999999864 25999999999999885 55677766531
Q ss_pred ----------------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccC
Q psy481 79 ----------------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLG 133 (166)
Q Consensus 79 ----------------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~ 133 (166)
.+++|++|+|++|++.+.++..........++.|+++|+++|+|+|||||+++..
T Consensus 146 ~~~~~~~G~~a~~~l~~~~~d~aFig~~gi~~~~g~~~~~~~ea~~k~~~~~~a~~~~ll~D~sKf~~~~~ 216 (253)
T COG1349 146 KKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEGGLTTFNEEEAEVKRAMIEAAREVILLADSSKFGRVAP 216 (253)
T ss_pred cCCCeEEcHHHHHHHHhCcccEEEEeccccCCCCCcCcCCHHHHHHHHHHHHhhCcEEEEEcCCccCCcee
Confidence 1489999999999999888866555433345788899999999999999988853
No 16
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=99.92 E-value=1.5e-25 Score=176.11 Aligned_cols=103 Identities=44% Similarity=0.579 Sum_probs=91.2
Q ss_pred eEEEcChHHHHHHHHhCCCeeeeCCCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 53 IVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 53 ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
+++||+|..++.++++.|+++..+.+..++|+||+|||+||.+++++||+|+++++||+++++|+++|+++|++|++++|
T Consensus 1 I~~V~tS~~T~~~a~~~Gi~l~~~~~~~~iDl~iDGaDevd~~l~lIKGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 1 IVGVPTSEATELLARKLGIPLVDLDEVDRIDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp EEEEESSHHHHHHHHHTT-EBE-GGGSSSEEEEEEE-SEEETTSEEE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred CEEECChHHHHHHHHHcCCcEEccccCCcceEEEECchhhcCCCCEEECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 57999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCcccEEEccCChHHHHHHhcC
Q psy481 133 GDRYKKGIPIEVSYHTVPPILYRSGS 158 (166)
Q Consensus 133 ~~~~~~~~pvev~p~~~~~v~~~~~~ 158 (166)
++ +|+||||.|++|.+|.++|.+
T Consensus 81 g~---~plPvEV~p~a~~~v~~~l~~ 103 (173)
T PF06026_consen 81 GK---FPLPVEVVPFAWSYVLRRLKE 103 (173)
T ss_dssp TS---S-EEEEE-GGGHHHHHHHHHH
T ss_pred CC---CceeEEEcHHHHHHHHHHHHH
Confidence 83 799999999999999999975
No 17
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=2.9e-06 Score=72.03 Aligned_cols=124 Identities=18% Similarity=0.119 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH------HHHHHHhCCCeeeeC
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ------ARQLILKNNMVLGDL 76 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~------ia~~l~~~~i~v~~l 76 (166)
.....++.||..+++ +|+||++|. .+-++|+..+...-.++ ++.=-++||-|-+ .+.+|++.|++++.+
T Consensus 101 ~~~~a~~~ia~~~a~-~i~dg~~IlTh~~S~~v~~~l~~A~~~---~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 101 RVEKAKERIAEIGAE-RIHDGDVILTHSFSKTVLEVLKTAADR---GKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred HHHHHHHHHHHHHHh-hccCCCEEEEecCcHHHHHHHHHhhhc---CCceEEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 346778999999999 899999765 78899999988887764 1111456776643 577899999987776
Q ss_pred CC------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 77 ET------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 77 ~~------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
-+ ..++|++|+|+|+|..+|+++.--|...+. -...+...-+++++.+-||..+.
T Consensus 177 ~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA-~~A~e~~~Pf~v~aesyKf~p~~ 237 (301)
T COG1184 177 VDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLA-LAARELRVPFYVVAESYKFVPKT 237 (301)
T ss_pred echHHHHHHHhCCEEEECccceecCCcEEeccchHHHH-HHHHHhCCCEEEEeeeecccccc
Confidence 32 137999999999999999887655554443 34445567899999999999964
No 18
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=98.40 E-value=4.4e-06 Score=71.24 Aligned_cols=122 Identities=14% Similarity=0.094 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcCCCeEEEcChH------HHHHHHHhCCCeeeeCCC
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF------QARQLILKNNMVLGDLET 78 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~------~ia~~l~~~~i~v~~l~~ 78 (166)
....++||+.|++ +|++|++|. .+-++|+..++....++ ++.--++|+-|- .++..|.+.|+++..+.+
T Consensus 104 ~~~~~~I~~~a~~-~i~~g~~ILT~~~S~tv~~~l~~A~~~---~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~D 179 (310)
T PRK08535 104 ENAVEKIGEIGAK-RIRDGDVIMTHCNSSAALSVIKTAHEQ---GKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVD 179 (310)
T ss_pred HHHHHHHHHHHHH-HcCCCCEEEEeCCcHHHHHHHHHHHHC---CCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEeh
Confidence 3457789999999 999999766 45577888877766543 221123455443 367788899998776532
Q ss_pred C------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 H------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 ~------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
. .++|++|+|||.|-.+|++..--|...+- -+.-+...-+|++++++||..+.
T Consensus 180 sav~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A-~~Ak~~~vPv~V~a~~~K~~~~~ 238 (310)
T PRK08535 180 SAVRYFMKDVDKVVVGADAITANGAVINKIGTSQIA-LAAHEARVPFMVAAETYKFSPKT 238 (310)
T ss_pred hHHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHH-HHHHHhCCCEEEecccceecCCC
Confidence 1 37999999999999999886654443332 34445677999999999999775
No 19
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=98.39 E-value=9.8e-06 Score=68.20 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEE-CcChhHHHHHHHHHHHHhhcC-CCeEEEcC------hHHHHHHHHhCCCeeeeC
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGI-GSGSTVVYAVDRLAERIKAEK-LKIVCVPT------SFQARQLILKNNMVLGDL 76 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~l-dsGsT~~~la~~L~~~~~~~~-~~ltvVTn------S~~ia~~l~~~~i~v~~l 76 (166)
..+.+++|++.+++ +|++|++|.- +-++|+..++....+. ++ ..+ +|+- ....+.+|.+.|+++..+
T Consensus 92 ~~~~~~~I~~~a~~-~I~~g~~ILTh~~S~tv~~~l~~A~~~---gk~~~V-~v~EsrP~~qG~~la~eL~~~GI~vtlI 166 (275)
T PRK08335 92 MEEAKREIGNIGSE-LIDDGDVIITHSFSSAVLEILKTAKRK---GKRFKV-ILTESAPDYEGLALANELEFLGIEFEVI 166 (275)
T ss_pred HHHHHHHHHHHHHH-HcCCCCEEEEECCcHHHHHHHHHHHHc---CCceEE-EEecCCCchhHHHHHHHHHHCCCCEEEE
Confidence 35668889999999 9999996654 5466777777766543 22 233 3333 234577888999987765
Q ss_pred CCC------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEc
Q psy481 77 ETH------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVS 145 (166)
Q Consensus 77 ~~~------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~ 145 (166)
-+. .++|++++|||.|..+|++..--|...+- -+..+...-+|++++++||...+.. ..+|+|=.
T Consensus 167 ~Dsa~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA-~~Ak~~~vPfyV~a~~~k~~~~~~~---~~i~ieer 237 (275)
T PRK08335 167 TDAQLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLA-LACHDNGVPFYVAAETFKFHPELKS---EEVELVER 237 (275)
T ss_pred eccHHHHHHHhCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEECccceecccCCC---CCcccccc
Confidence 321 36999999999999998876654444432 3334566799999999999988753 25666443
No 20
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=98.37 E-value=4.5e-06 Score=70.96 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcC-CCeEEEcChH------HHHHHHHhCCCeeeeCC
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEK-LKIVCVPTSF------QARQLILKNNMVLGDLE 77 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~-~~ltvVTnS~------~ia~~l~~~~i~v~~l~ 77 (166)
.+..++|++.|++ +|++|++|. .+-++|+..++....++ ++ ..+ +|+-|- .++..|.+.|+++..+.
T Consensus 99 ~~a~~~I~~~a~~-~i~~g~~ILT~~~S~tv~~~l~~a~~~---~~~f~V-~v~EsrP~~~G~~~a~~L~~~gI~vtlI~ 173 (301)
T TIGR00511 99 DKAQERIGEIGAK-RIRDGDVVMTHCNSEAALSVIKTAFEQ---GKDIEV-IATETRPRKQGHITAKELRDYGIPVTLIV 173 (301)
T ss_pred HHHHHHHHHHHHH-HcCCCCEEEEECCcHHHHHHHHHHHHc---CCcEEE-EEecCCCcchHHHHHHHHHHCCCCEEEEe
Confidence 4567889999999 999999766 45577888777766543 22 233 444443 36778889999876653
Q ss_pred C------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 78 T------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 78 ~------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
+ ..++|++|+|||.|-.+|++..--|...+- -+..+....+|+++++.||..+.
T Consensus 174 Dsa~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA-~~Ak~~~vPv~V~a~~~K~~~~~ 233 (301)
T TIGR00511 174 DSAVRYFMKEVDHVVVGADAITANGALINKIGTSQLA-LAAREARVPFMVAAETYKFHPKT 233 (301)
T ss_pred hhHHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHH-HHHHHhCCCEEEEcccceecCCC
Confidence 2 137999999999999999887655444432 34445667999999999999875
No 21
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=98.36 E-value=1.1e-05 Score=68.62 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEECcC---------hhHHHHHHHHHHHHhhcC-CCeEEEcCh-------HHHHHHHHhC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIGSG---------STVVYAVDRLAERIKAEK-LKIVCVPTS-------FQARQLILKN 69 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ldsG---------sT~~~la~~L~~~~~~~~-~~ltvVTnS-------~~ia~~l~~~ 69 (166)
+..++||+.|++ +|++|++|.-=+. +|+..+.+...++ ++ ..+ +|+-| -.++.+|.+.
T Consensus 103 ~~~~~Ia~~a~~-~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~---g~~~~V-~v~EsrP~~~G~~~~a~~L~~~ 177 (303)
T TIGR00524 103 ETNRKIGENGAK-LIKDGDTVLTHCNAGALATSDYGTALGVIRSAWED---GKRIRV-IACETRPRNQGSRLTAWELMQD 177 (303)
T ss_pred HHHHHHHHHHHH-HccCCCEEEEecCCccccccCcchHHHHHHHHHHc---CCceEE-EECCCCCccchHHHHHHHHHHC
Confidence 455789999999 9999997776543 4777777766543 22 233 44432 3467788899
Q ss_pred CCeeeeCCC------CC--cccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCccc
Q psy481 70 NMVLGDLET------HP--DLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIP 141 (166)
Q Consensus 70 ~i~v~~l~~------~~--~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~p 141 (166)
|+++..+.+ .. ++|++|+|||.|-.+|++..--|...+- -+..+....+|+++++.||..+.... ..+|
T Consensus 178 gI~vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA-~~Ak~~~vPv~V~a~s~K~~~~~~~g--~~i~ 254 (303)
T TIGR00524 178 GIDVTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLA-VLAKEFRIPFFVAAPLSTFDTKTSCG--EDIV 254 (303)
T ss_pred CCCEEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHH-HHHHHhCCCEEEecccccccCCCCCc--cccc
Confidence 998766521 12 6999999999999999887655544432 23345567899999999999874221 2466
Q ss_pred EEEc
Q psy481 142 IEVS 145 (166)
Q Consensus 142 vev~ 145 (166)
+|-.
T Consensus 255 ~e~~ 258 (303)
T TIGR00524 255 IEER 258 (303)
T ss_pred cccC
Confidence 6544
No 22
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=98.31 E-value=1.4e-05 Score=68.93 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCCCCCC----EEEE--CcC-------hhHHHHHHHHHHHHhhcCCCeEEEcChH-------HHHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNT----AVGI--GSG-------STVVYAVDRLAERIKAEKLKIVCVPTSF-------QARQL 65 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~----vI~l--dsG-------sT~~~la~~L~~~~~~~~~~ltvVTnS~-------~ia~~ 65 (166)
.+..++|++.+++ +|+||+ +|.- .+| +|+..+++...++ ++.--++|+-|- .++.+
T Consensus 126 ~~~~~~I~~~g~~-~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~---g~~~~V~v~EsrP~~qG~rlta~~ 201 (331)
T TIGR00512 126 LEDNRAIGENGAA-LIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK---GRLEHVYADETRPRLQGARLTAWE 201 (331)
T ss_pred HHHHHHHHHHHHH-HhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc---CCceEEEECCCCchhhHHHHHHHH
Confidence 3456789999999 999999 7776 233 2777777666543 221233444332 23667
Q ss_pred HHhCCCeeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcC
Q psy481 66 ILKNNMVLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYK 137 (166)
Q Consensus 66 l~~~~i~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~ 137 (166)
|.+.|+++..+-+ ..++|++++|||.|-.+|++..--|...+- -+.-+...-+|++++.+||...... +
T Consensus 202 L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA-~~Ak~~~vPfyV~a~~~kfd~~~~~-~- 278 (331)
T TIGR00512 202 LVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAANGDTANKIGTYQLA-VLAKHHGVPFYVAAPTSTIDLETKD-G- 278 (331)
T ss_pred HHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEeccccccccCCCC-c-
Confidence 8899998766532 126999999999999999886654443332 3344566789999999999877532 1
Q ss_pred CcccEEEcc
Q psy481 138 KGIPIEVSY 146 (166)
Q Consensus 138 ~~~pvev~p 146 (166)
..+|+|-.+
T Consensus 279 ~~i~iE~r~ 287 (331)
T TIGR00512 279 AEIPIEERP 287 (331)
T ss_pred cccccccCC
Confidence 246666544
No 23
>KOG1466|consensus
Probab=98.07 E-value=4.9e-05 Score=63.52 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCC-eEEEcC------hHHHHHHHHhCCCeeeeCCC-
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPT------SFQARQLILKNNMVLGDLET- 78 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~-ltvVTn------S~~ia~~l~~~~i~v~~l~~- 78 (166)
..+++||+.+-. ||.||++|..-+=|-+.. +.|...-+. ++. -..||- .-..+.+|.+.|+++..+-+
T Consensus 115 ~sR~~IA~l~~~-Fi~dg~~ILtHg~SRvVl--~~L~~Aa~~-~~~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDS 190 (313)
T KOG1466|consen 115 KSRQKIAMLAQD-FITDGCTILTHGYSRVVL--EVLLTAAQN-KKRFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDS 190 (313)
T ss_pred HHHHHHHHHhhh-HhhCCCEEEEcchhHHHH--HHHHHHHhc-CceEEEEEecCCCCCchhHHHHHHHhcCCCeEEEehh
Confidence 346789999998 999999999877665533 444322111 122 335663 34567788999998876532
Q ss_pred -----CCcccEEEEccccccCCCccccCCcchHHHHHHHHhh-CCceEEEEcCCCcccccCCCcCCcccEEEccC
Q psy481 79 -----HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASC-TPKLVIIADHTKQSKNLGDRYKKGIPIEVSYH 147 (166)
Q Consensus 79 -----~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~-A~~~illaD~sKf~~~l~~~~~~~~pvev~p~ 147 (166)
..++|..|.||+||-++||+++--|...+ .+++++ =+-+|++|.+-||++-++=+ ...+|-+-.|+
T Consensus 191 aVgyvMe~vD~VlVGAEGVvEsGGIIN~iGTyq~--~v~Ak~~~kPfYV~AES~KFvRlfPLn-Q~Dlp~~~~p~ 262 (313)
T KOG1466|consen 191 AVGYVMERVDLVLVGAEGVVESGGIINKIGTYQV--AVCAKSMNKPFYVVAESHKFVRLFPLN-QKDLPPALPPF 262 (313)
T ss_pred hHHHHHhhccEEEEccceeeecCceeeecccchh--hhhHHhcCCCeEEEeeccceeeeccCc-ccccccccCCc
Confidence 14899999999999999999876554333 233333 35799999999998765421 14566665444
No 24
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=98.06 E-value=8.7e-05 Score=64.34 Aligned_cols=132 Identities=16% Similarity=0.116 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEE--CcCh-------hHHHHHHHHHHHHhhcCCCeEEEcChHH-------HHHHHHhCC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGI--GSGS-------TVVYAVDRLAERIKAEKLKIVCVPTSFQ-------ARQLILKNN 70 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~l--dsGs-------T~~~la~~L~~~~~~~~~~ltvVTnS~~-------ia~~l~~~~ 70 (166)
+..++|++.+++ +|++|++|.- .||+ |++.+++...++ ++.--++|+-|-+ ++.+|.+.|
T Consensus 131 ~~~~~I~~~g~~-~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~~---gk~~~V~v~EsRP~~qG~~lta~eL~~~G 206 (344)
T PRK05720 131 EINRAIGEHGLT-LIRKGQGILTHCNAGWLATAGYGTALAPIYAAKEK---GIDIHVYADETRPRLQGARLTAWELYQAG 206 (344)
T ss_pred HHHHHHHHHHHH-HccCCCEEEEecCCCcceecchhHHHHHHHHHHHc---CCceEEEEcCCCChhhhHHHHHHHHHHCC
Confidence 455689999999 9999998774 2443 455566655432 2212234444322 467788999
Q ss_pred CeeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccE
Q psy481 71 MVLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPI 142 (166)
Q Consensus 71 i~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pv 142 (166)
+++..+-+ ...+|++|+|||.|-.+|++..--|...+- -+.-+...-+|++++.+||..+.... -.+|+
T Consensus 207 I~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lA-l~Ak~~~vPfyV~a~~~kfd~~~~~g--~~i~i 283 (344)
T PRK05720 207 IDVTVITDNMAAHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLA-IAAKYHGVPFYVAAPSSTIDLTLADG--KEIPI 283 (344)
T ss_pred CCEEEEcccHHHHHhcccCCCEEEEcccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEeccccccCcCCCCC--ccccc
Confidence 98776532 125999999999999999886655444432 34445667899999999998775321 24666
Q ss_pred EEc
Q psy481 143 EVS 145 (166)
Q Consensus 143 ev~ 145 (166)
|-.
T Consensus 284 E~r 286 (344)
T PRK05720 284 EER 286 (344)
T ss_pred ccC
Confidence 544
No 25
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=98.03 E-value=3.3e-05 Score=64.27 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCEE-EECcChhHHHHHHHHHHHHhhcCCCeEEEcChH------HHHHHHHhCCCeeeeCCC
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAV-GIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF------QARQLILKNNMVLGDLET 78 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI-~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~------~ia~~l~~~~i~v~~l~~ 78 (166)
....++|+..+.+ +|++|++| -.|-++|+..+.....+. .....+ +|+-|- ..|..|.+.|+++..+.+
T Consensus 91 ~~~~~~I~~~~~~-~I~~~~~ILT~~~S~~v~~~l~~a~~~--~~~~~V-~v~es~P~~eG~~~a~~L~~~gi~v~~i~d 166 (282)
T PF01008_consen 91 EQAREKIADHASE-LINDGDTILTHGYSSTVERFLLSAKKK--GKKFRV-IVLESRPYNEGRLMAKELAEAGIPVTLIPD 166 (282)
T ss_dssp HHHHHHHHHHHHC-CC-TTEEEEEES--SHHHHHHHHHHHT--TEEEEE-EEE--TTTTHHHTHHHHHHHTT-EEEEE-G
T ss_pred HHHHHHHHHHHHH-hccCCeEEEEeCCchHHHHHHHHHHHc--CCeEEE-EEccCCcchhhhhHHHHhhhcceeEEEEec
Confidence 4567789999998 99999966 468888888877775442 011233 444444 467788889998776532
Q ss_pred C------Cc-ccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 79 H------PD-LSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 79 ~------~~-~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
. .+ +|++++|||.|-.+|+++.--|...+- -+.-+...-+|+++++.||..+.
T Consensus 167 ~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a-~~Ak~~~vPv~v~~~~~K~~~~~ 226 (282)
T PF01008_consen 167 SAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLA-LAAKEFNVPVYVLAESYKFSPRY 226 (282)
T ss_dssp GGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHH-HHHHHTT-EEEEE--GGGBETTC
T ss_pred hHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHH-HHHHhhCCCEEEEcccccccccc
Confidence 1 36 999999999999999887655543332 23334567899999999998875
No 26
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.98 E-value=0.00013 Score=63.65 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEC--cCh--------hHHHHHHHHHHHHhhcCCCe-EEEcChHH-------HHHHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIG--SGS--------TVVYAVDRLAERIKAEKLKI-VCVPTSFQ-------ARQLIL 67 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ld--sGs--------T~~~la~~L~~~~~~~~~~l-tvVTnS~~-------ia~~l~ 67 (166)
.+..++|++.+++ +|+||++|.-= ||+ |+..++....++ ++ ++ ++++-|-+ ++.+|.
T Consensus 150 ~~~~~~I~~~g~~-~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~~---gk-~f~V~v~EsRP~~qG~rlta~eL~ 224 (363)
T PRK05772 150 YDAEIQMGLYGLE-KLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKAL---GM-SVSVIAPETRPWLQGSRLTVYELM 224 (363)
T ss_pred HHHHHHHHHHHHh-hcCCCCEEEEecCCcchhhccccccHHHHHHHHHHC---CC-eEEEEECCCCccchhHHHHHHHHH
Confidence 4567789999999 99999977542 332 445555555432 22 33 34444322 356888
Q ss_pred hCCCeeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCc
Q psy481 68 KNNMVLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKG 139 (166)
Q Consensus 68 ~~~i~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~ 139 (166)
+.|+++..+-+ ...+|++|+|||.|-.+|++..--|...+- -+.-++..-+|++++++||..+... -.
T Consensus 225 ~~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA-~~Ak~~~vPfyV~ap~~k~d~~~~~---~~ 300 (363)
T PRK05772 225 EEGIKVTLITDTAVGLVMYKDMVNNVMVGADRILRDGHVFNKIGTFKEA-VIAHELGIPFYALAPTSTFDLKSDV---ND 300 (363)
T ss_pred HCCCCEEEEehhHHHHHHhhcCCCEEEECccEEecCCCEeehhhhHHHH-HHHHHhCCCEEEEccccccCccccc---cc
Confidence 99998766531 125999999999999998876544443332 3444566789999999999987642 24
Q ss_pred ccEEE
Q psy481 140 IPIEV 144 (166)
Q Consensus 140 ~pvev 144 (166)
+|+|-
T Consensus 301 i~iee 305 (363)
T PRK05772 301 VKIEE 305 (363)
T ss_pred ccccc
Confidence 56544
No 27
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=97.95 E-value=3.2e-05 Score=63.10 Aligned_cols=110 Identities=19% Similarity=0.297 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHH-------------HHhCC-C
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL-------------ILKNN-M 71 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~-------------l~~~~-i 71 (166)
...|.++|++|+. .++||+.|.||.| --..+|+++++ ++.+.+.|.+...- +...| .
T Consensus 5 ~~~~e~ia~r~A~-el~dG~~VnlGIG-lPtlvan~~~~-------~~~~~~~seng~Lg~g~~p~~~~~d~~linaG~~ 75 (225)
T COG2057 5 KTEREMIAKRAAR-ELKDGDYVNLGIG-LPTLVANYAPE-------GMNVLLQSENGLLGVGPAPLPGEEDADLINAGKQ 75 (225)
T ss_pred chhHHHHHHHHHH-hccCCCEEEecCC-chHHhHhhccc-------ccceEEecCceeEEecCCCCCCCCCcchhhCCCc
Confidence 4689999999999 7999999999999 67778888875 34456665554221 11111 1
Q ss_pred eeeeCC--------------CCCcccEEEEccccccCCCcc---------ccCCcchHHHHHHHHhhCCceEEEEcCCCc
Q psy481 72 VLGDLE--------------THPDLSCVIDGADEVDENLVL---------IKGGGGCLTQEKIVASCTPKLVIIADHTKQ 128 (166)
Q Consensus 72 ~v~~l~--------------~~~~~D~af~gad~vd~~~~~---------~~~~~~a~~~ek~i~~~A~~~illaD~sKf 128 (166)
++..+. +-.++|++|+|+-.||..+++ ++|.+++.- ++..|+++|++.+|+|-
T Consensus 76 ~vt~~pg~~~f~sa~sf~~irGGhidv~vLGa~QVd~~Gnlanw~Ipgk~vpGmGGAmd----l~~gakkvii~m~H~~k 151 (225)
T COG2057 76 PVTALPGASVFDSADSFAMIRGGHIDVAVLGAAQVDEYGNLANWMIPGKMVPGMGGAMD----LVTGAKKVIVVMEHTKK 151 (225)
T ss_pred eeEecCCceEEchHHHHHHHhCCceEEEEecceeecccCceeeeeECCccccCCccchh----hhcCCcEEEEEeeeecc
Confidence 222211 113899999999999987643 334444442 34688999999999985
No 28
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.74 E-value=0.00068 Score=58.71 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEC--cCh-------hHHHHHHHHHHHHhhcCCCeE-EEcChH------H-HHHHHHhC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIG--SGS-------TVVYAVDRLAERIKAEKLKIV-CVPTSF------Q-ARQLILKN 69 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ld--sGs-------T~~~la~~L~~~~~~~~~~lt-vVTnS~------~-ia~~l~~~ 69 (166)
+..++|++.+++ +|++|++|.-= ||+ |++.+++...++ ++ ++. +|+-|- . ++.+|.+.
T Consensus 132 ~~~~~I~~~g~~-~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~---gk-~~~V~v~EtRP~~qG~rlta~eL~~~ 206 (339)
T PRK06036 132 ARNKLIGKHGAK-LLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQ---GK-EIKVIACETRPLNQGSRLTTWELMQD 206 (339)
T ss_pred HHHHHHHHHHHH-HccCCCEEEEecCCccccccccchHHHHHHHHHHc---CC-ceEEEEcCCCchhhHHHHHHHHHHHc
Confidence 456788999999 99999987763 443 556666665542 22 233 444332 2 46688899
Q ss_pred CCeeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 70 NMVLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 70 ~i~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
|+++..+-+ ...+|+++.|||.|-.+ ++.. .-|....--+..++..-+|+++..+||....
T Consensus 207 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~an-Gv~N-KiGT~~lA~~Ak~~~vPfyV~ap~s~~d~~~ 275 (339)
T PRK06036 207 NIPVTLITDSMAGIVMRQGMVDKVIVGADRITRD-AVFN-KIGTYTHSVLAKEHEIPFYVAAPLSTFDFEG 275 (339)
T ss_pred CCCEEEEehhHHHHHhccCCCCEEEECccchhhc-Ceeh-hhhHHHHHHHHHHhCCCEEEEeecCccCCCc
Confidence 998766522 12499999999999988 4433 3333333234445667899999999997764
No 29
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=97.72 E-value=0.00088 Score=57.81 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEEC--cCh-------hHHHHHHHHHHHHhhcCCCeE-EEcChH------H-HHHHHHhCCC
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIG--SGS-------TVVYAVDRLAERIKAEKLKIV-CVPTSF------Q-ARQLILKNNM 71 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ld--sGs-------T~~~la~~L~~~~~~~~~~lt-vVTnS~------~-ia~~l~~~~i 71 (166)
-++|++.|++ +|++|++|.-= +|+ |++.+++...+. ++ ++. +|+-|- . ++.+|.+.|+
T Consensus 123 ~~~I~~~g~~-~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~---gk-~f~V~v~EsRP~~qG~rlta~eL~~~GI 197 (329)
T PRK06371 123 SKKIGEYGNE-LIKNGARILTHCNAGALAVVDWGTALAPIRIAHRN---GK-NIFVFVDETRPRLQGARLTAWELAQEGI 197 (329)
T ss_pred HHHHHHHHHH-HcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHc---CC-eeEEEECCCCCcchHHHHHHHHHHHCCC
Confidence 4679999999 99999987662 344 445666665533 22 233 344422 2 4678889999
Q ss_pred eeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 72 VLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 72 ~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
++..+-+ ...+|++|+|||.|-.+|++..--|...+- -+.-+...-+|+++..++|....
T Consensus 198 ~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lA-l~Ak~~~VPfyV~a~~~t~d~~~ 265 (329)
T PRK06371 198 DHAIIADNAAGYFMRKKEIDLVIVGADRIASNGDFANKIGTYEKA-VLAKVNGIPFYVAAPGSTFDFSI 265 (329)
T ss_pred CEEEEcccHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEeccccccCCCC
Confidence 8775422 125999999999999998886544443332 33345566899999988886654
No 30
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=97.70 E-value=0.0005 Score=57.30 Aligned_cols=114 Identities=18% Similarity=0.129 Sum_probs=76.9
Q ss_pred HHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh------HHHHHHHHhCCCeeeeCCC-----
Q psy481 10 RIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS------FQARQLILKNNMVLGDLET----- 78 (166)
Q Consensus 10 ~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS------~~ia~~l~~~~i~v~~l~~----- 78 (166)
+.|++.|++ +|.++-++-+++++|+..+...-. ...-++|+-| ..++..|.+.|+++..+..
T Consensus 75 ~~~~~~A~~-~i~~dvILT~s~S~~v~~~l~~~~------~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~ 147 (253)
T PRK06372 75 KMAIEHAKP-LFNDSVIGTISSSQVLKAFISSSE------KIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCE 147 (253)
T ss_pred HHHHHHHHh-hcCCCEEEEeCCcHHHHHHHHhcC------CCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHH
Confidence 457778888 795443555677777766653311 1123455543 3457788889998765532
Q ss_pred -CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccc
Q psy481 79 -HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKN 131 (166)
Q Consensus 79 -~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~ 131 (166)
..++|++|+|||.|-.+|++..--|...+- .+..+...-+|+++...||..+
T Consensus 148 ~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~A-l~A~~~~vPv~V~~~s~Kf~~~ 200 (253)
T PRK06372 148 AVLNVDAVIVGSDSVLYDGGLIHKNGTFPLA-LCARYLKKPFYSLTISMKIERN 200 (253)
T ss_pred HHHhCCEEEECccEEecCCCEeehhhHHHHH-HHHHHcCCCEEEEeeccccCCC
Confidence 136999999999999999886655444432 3444566789999999999765
No 31
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=97.65 E-value=0.0014 Score=57.10 Aligned_cols=133 Identities=16% Similarity=0.102 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEEC-c-------ChhHHHHHHHHHHHHhhcCCCeEEEcCh------HHH-HHHHHhCC
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIG-S-------GSTVVYAVDRLAERIKAEKLKIVCVPTS------FQA-RQLILKNN 70 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ld-s-------GsT~~~la~~L~~~~~~~~~~ltvVTnS------~~i-a~~l~~~~ 70 (166)
.+..++|++.+++ +|++|+++--. + ..|+..+++...++ ++.-..+++-| ... +.+|.+.|
T Consensus 144 ~~~~~~Ig~~g~~-li~dg~ILTHcnaG~LAt~~~gTal~vi~~A~~~---gk~~~V~v~EtRP~~qG~rlta~eL~~~G 219 (356)
T PRK08334 144 VEANLRMGHYGAE-VLPEGNVLTHCNAGSLATVHLGTVGAVLRVMHKD---GTLKLLWVDETRPVLQGARLSAWEYHYDG 219 (356)
T ss_pred HHHHHHHHHHHHh-hcCCCCEEEecCcchhhhcccchHHHHHHHHHHc---CCeEEEEECCCCchhhHHHHHHHHHHHCC
Confidence 3557889999999 99999944333 1 23566666666543 22223355523 223 55788999
Q ss_pred CeeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccE
Q psy481 71 MVLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPI 142 (166)
Q Consensus 71 i~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pv 142 (166)
+++..+-+ ..++|+++.|||.|-.+|++..--|...+- -+.-++..-+|+++..+||....... ..+|+
T Consensus 220 I~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA-~~Ak~~~vPfyV~Ap~~t~d~~~~~~--~~i~i 296 (356)
T PRK08334 220 IPLKLISDNMAGFVMQQGKVDAIIVGADRIVANGDFANKIGTYTLA-VLAKEHGIPFFTVAPLSTIDMSLKSG--KEIPI 296 (356)
T ss_pred CCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEeehhhHHHHH-HHHHHhCCCEEEEcccCccCCCCCCC--ccccc
Confidence 98766521 126999999999999998886654443332 33345667899999999998765321 24666
Q ss_pred EEc
Q psy481 143 EVS 145 (166)
Q Consensus 143 ev~ 145 (166)
|-.
T Consensus 297 E~r 299 (356)
T PRK08334 297 EER 299 (356)
T ss_pred ccC
Confidence 654
No 32
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=97.21 E-value=0.0018 Score=52.31 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHH----------H-HHHhCC------
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQAR----------Q-LILKNN------ 70 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia----------~-~l~~~~------ 70 (166)
.++.||+.|++ +|+||++|.+|.| .-..++.+|.+. +++++.|-+=-+- . .+.+.+
T Consensus 2 ~~~~Ia~~aA~-~i~dg~~v~lGiG-iP~~va~~l~~~-----~~l~l~~E~G~~g~~p~p~~~~~~~~l~~~g~~~~~~ 74 (207)
T TIGR02428 2 TRDQIAARAAQ-ELKDGDYVNLGIG-IPTLVANYLPEG-----IEVFLQSENGILGMGPAPEPGEEDPDLINAGKQPVTL 74 (207)
T ss_pred hHHHHHHHHHH-hcCCCCEEEEeec-HHHHHHHHHhcC-----CeEEEEEeCceecCccCCCCCCcCHHHHhCCCCceee
Confidence 37889999999 8999999999999 667777777652 3677766542210 0 233321
Q ss_pred ---Ceeee------CCCCCcccEEEEccccccCCCccc---------cCCcchHHHHHHHHhhCCceEEEEcCCC
Q psy481 71 ---MVLGD------LETHPDLSCVIDGADEVDENLVLI---------KGGGGCLTQEKIVASCTPKLVIIADHTK 127 (166)
Q Consensus 71 ---i~v~~------l~~~~~~D~af~gad~vd~~~~~~---------~~~~~a~~~ek~i~~~A~~~illaD~sK 127 (166)
..++. +-+..++|++|+|+-+||..+++- .|.|++. -+...|+++++...|++
T Consensus 75 ~~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~~~~~~G~GG~~----d~~~~a~~~i~~~~~t~ 145 (207)
T TIGR02428 75 LPGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLANWMIPGKLVPGMGGAM----DLVAGAKRVIVAMEHTT 145 (207)
T ss_pred ccCcEEecChhheeeEcCCceeEEEechHHhCCCCcccccccCCccccccCchh----hhhcCCCEEEEEEeeEC
Confidence 11111 112247999999999999865431 2222222 23457789988887743
No 33
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=97.19 E-value=0.0026 Score=51.93 Aligned_cols=113 Identities=16% Similarity=0.132 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCCCCCCEEEECcC---hhHHHHHHHHHHHHhhcCCCeEEEcChH---H--HHHHHHhCCCe-eee---
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIGSG---STVVYAVDRLAERIKAEKLKIVCVPTSF---Q--ARQLILKNNMV-LGD--- 75 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ldsG---sT~~~la~~L~~~~~~~~~~ltvVTnS~---~--ia~~l~~~~i~-v~~--- 75 (166)
.|..-+.+|++ +++|||+|.+|.= -+-..++.+|.++ +-+++|+|+|+- + ...++....++ ++.
T Consensus 3 ~k~~s~~ea~~-~~~dG~ti~~gGFg~~g~P~alI~ali~~---GvkdLt~I~n~~g~~d~glg~li~~~~vkk~i~S~i 78 (220)
T COG1788 3 KKLSSAEEAVA-NVKDGDTIMIGGFGTCGIPEALIHALIRQ---GVKDLTVISNNAGFPDLGLGKLIGNGQVKKMIASYI 78 (220)
T ss_pred chhhhHHHHHh-hCCCCCEEEEccccccCChHHHHHHHHHc---CCcceEEEecCCCCCcccHHHHhhcCcEEEEEEecc
Confidence 46667888888 8999999998753 4556778888754 557999999994 3 22222332232 100
Q ss_pred ----------------------------------------------------------------CCCCCcccEEEEcccc
Q psy481 76 ----------------------------------------------------------------LETHPDLSCVIDGADE 91 (166)
Q Consensus 76 ----------------------------------------------------------------l~~~~~~D~af~gad~ 91 (166)
+..-.+.|++|+-+.-
T Consensus 79 g~n~~~~r~~~~geleve~~pqgtLaerirAgg~Glp~~~t~tg~Gt~v~~gk~~~~~~G~~yvle~~lraDvAiI~a~k 158 (220)
T COG1788 79 GSNPEFGRQMLAGELEVELVPQGTLAERIRAGGAGLPGFPTRTGVGTLVAEGKVTRPFDGEPYVLEPALRADVALIHAHK 158 (220)
T ss_pred CCCHHHHHHhhcceEEEEECCchHHHHHHHhhhcCCCcceeccccCceeecCcEEEeeCCeEEEEecccCcceEEEEeee
Confidence 0011389999999999
Q ss_pred ccCCCccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 92 VDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 92 vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
-|..+|+...+..-.+- ..++-.|+++|+=+++
T Consensus 159 aD~~GNl~y~~t~~nfn-~~~A~AAk~~IvevEe 191 (220)
T COG1788 159 ADSHGNLTYRGTARNFN-PLMAMAAKRTIVEVEE 191 (220)
T ss_pred cCCcCCEEEEcccccCC-HHHHhhcCeEEEEEEe
Confidence 99999996544333232 5666789999987654
No 34
>KOG1465|consensus
Probab=97.03 E-value=0.0047 Score=52.82 Aligned_cols=139 Identities=17% Similarity=0.105 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCCCCCEE-EECcChhHHHHHHHHHHHHhhcCCCeEEEc----ChH--HHHHHHHhCCCeeeeCCC---
Q psy481 9 KRIAAYQAVDDNVLNNTAV-GIGSGSTVVYAVDRLAERIKAEKLKIVCVP----TSF--QARQLILKNNMVLGDLET--- 78 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI-~ldsGsT~~~la~~L~~~~~~~~~~ltvVT----nS~--~ia~~l~~~~i~v~~l~~--- 78 (166)
.+.||..|.+ +|.++++| -+|++.|+..|...=.++ +++-.++|+ |.- ..|..|.+.|++.+.+..
T Consensus 149 ~E~Ia~Qa~e-hihsnEviLT~g~SrTV~~FL~~A~kk---~Rkf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaV 224 (353)
T KOG1465|consen 149 RENIAVQAIE-HIHSNEVILTLGSSRTVENFLKHAAKK---GRKFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAV 224 (353)
T ss_pred hHhHHHHHHH-HhccCceEEecCccHHHHHHHHHHHhc---cCceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHH
Confidence 3569999999 99999976 478999999888776543 222123443 332 345567789998655432
Q ss_pred ---CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCC----cCCcccEEEccCChHH
Q psy481 79 ---HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDR----YKKGIPIEVSYHTVPP 151 (166)
Q Consensus 79 ---~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~----~~~~~pvev~p~~~~~ 151 (166)
..++.+.++|+.++=.+|++....|..... .+.-+.|--+|++|...|+..-...+ .++.-|=|++|+.-..
T Consensus 225 fA~MsrVnKVIigt~avl~NGgl~~~~G~~~vA-laAk~h~vPv~VlAp~yKLsPlyp~~~ds~~~f~s~~~il~~~e~~ 303 (353)
T KOG1465|consen 225 FAMMSRVNKVIIGTHAVLANGGLRAPSGVHTVA-LAAKHHSVPVIVLAPMYKLSPLYPTNPDSFHEFRSPSEILPFSEGD 303 (353)
T ss_pred HHHhhhcceEEEEeeeEecCCCeeccchHHHHH-HHHHhcCCcEEEecchhhcCCCCCCCHHHHHhcCCcccccCccccC
Confidence 248999999999999999986665544433 34456777899999999987664321 1255677888877643
Q ss_pred H
Q psy481 152 I 152 (166)
Q Consensus 152 v 152 (166)
.
T Consensus 304 ~ 304 (353)
T KOG1465|consen 304 P 304 (353)
T ss_pred c
Confidence 3
No 35
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=97.02 E-value=0.0058 Score=49.89 Aligned_cols=111 Identities=12% Similarity=0.004 Sum_probs=72.1
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcCh---hHHHHHHHHHHHHhhcCCCeEEEcChHH----HHHHHHhCCC--ee------
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGS---TVVYAVDRLAERIKAEKLKIVCVPTSFQ----ARQLILKNNM--VL------ 73 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGs---T~~~la~~L~~~~~~~~~~ltvVTnS~~----ia~~l~~~~i--~v------ 73 (166)
|..=+++|++ +|+|||+|.+|.-. +-..++++|.++ +.+++|++.|+.. -...|...|. ++
T Consensus 4 K~~s~~eAv~-~I~DG~ti~~gGf~~~~~P~ali~al~r~---~~~dLtli~~~~g~~~~g~~~L~~~G~Vkr~i~s~~g 79 (219)
T PRK09920 4 KLMTLQDATG-FFRDGMTIMVGGFMGIGTPSRLVEALLES---GVRDLTLIANDTAFVDTGIGPLIVNGRVKKVIASHIG 79 (219)
T ss_pred ccCcHHHHHh-cCCCCCEEEECcccCcCCHHHHHHHHHhc---CCCceEEEEeCCCCCCcchhhHhhCCCEeEEEecccc
Confidence 4455788998 89999999998754 567777777654 4468999985531 1122333331 11
Q ss_pred ----------------eeC-------------------------C--------------------CCCcccEEEEccccc
Q psy481 74 ----------------GDL-------------------------E--------------------THPDLSCVIDGADEV 92 (166)
Q Consensus 74 ----------------~~l-------------------------~--------------------~~~~~D~af~gad~v 92 (166)
..+ + ...++|++|+=+..-
T Consensus 80 ~~p~~~~~~~~g~ie~~~~pqg~l~~~lRA~a~G~Pg~~t~~glGT~v~~gk~~~~~~G~~~l~~~a~~~DvAlI~a~~A 159 (219)
T PRK09920 80 TNPETGRRMISGEMDVELVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRA 159 (219)
T ss_pred CCHHHHHHHHcCCeEEEECCHHHHHHHHHHHHCCCCceeeccccCccccCCCceeEECCeEEEEEecCCCcEEEEEeccc
Confidence 100 0 013799999999999
Q ss_pred cCCCccccCCcchHHHHHHHHhhCCceEEEEc
Q psy481 93 DENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124 (166)
Q Consensus 93 d~~~~~~~~~~~a~~~ek~i~~~A~~~illaD 124 (166)
|..+|+...++...+ +..++..|+.+|+=++
T Consensus 160 D~~GN~~~~~~~~~~-~~~~A~AA~~vIv~ve 190 (219)
T PRK09920 160 DTLGNLTYQLSARNF-NPLIALAADITLVEPD 190 (219)
T ss_pred CCCCCEEEECccccC-CHHHHhhCCeEEEEEE
Confidence 999999665443333 3457788887776554
No 36
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=96.72 E-value=0.012 Score=48.06 Aligned_cols=45 Identities=11% Similarity=-0.056 Sum_probs=33.2
Q ss_pred CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 80 PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 80 ~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
.++|++|+=+..-|+.+|+.-.++...+ +..++..|+.+|+=++.
T Consensus 150 ~~~DvAlIha~~AD~~GN~~~~~~~~~~-~~~~A~AAk~vIv~vE~ 194 (222)
T TIGR02429 150 LPADFALIKAHKADRWGNLTYRKAARNF-GPIMAMAAKTTIAQVSQ 194 (222)
T ss_pred CCCcEEEEEecccCCCCcEEEECccccC-CHHHHhhcCcEEEEEEE
Confidence 3899999999999999999655443333 34577889997775543
No 37
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=96.20 E-value=0.0056 Score=50.75 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcC----CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc-----------ChHHHHHHH-HhC
Q psy481 6 EEAKRIAAYQAVDDN----VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP-----------TSFQARQLI-LKN 69 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~----I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT-----------nS~~ia~~l-~~~ 69 (166)
.+.++.+|+.|++ | +++|++|+++-|+|+.+++++|... ...+++||+ ++..++..+ ...
T Consensus 32 ~~~~~~l~~~aA~-~L~~~l~~~~~iGv~wG~Tl~~~~~~l~~~---~~~~~~vV~l~Gg~~~~~~~~~~~i~~~lA~~~ 107 (255)
T PF04198_consen 32 EDILESLGEAAAE-YLSELLKDGDVIGVGWGRTLYAVANHLPPK---SLPNVTVVPLIGGVGNSNSYQANEIARRLAEKL 107 (255)
T ss_dssp HHHHHHHHHHHHH-HHHHH--TTEEEEE-TSHHHHHHHHTS--S---SSSCEEEEESBSBTTTSSGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHhCCCCCEEEEcchHHHHHHHHhcCcc---CCCCcEEEECCCCCCCCCCcCHHHHHHHHHHHh
Confidence 5668888888886 5 6899999999999999999999863 234788884 566666655 455
Q ss_pred CCeeeeCC-------------------------CCCcccEEEEccccccCCC
Q psy481 70 NMVLGDLE-------------------------THPDLSCVIDGADEVDENL 96 (166)
Q Consensus 70 ~i~v~~l~-------------------------~~~~~D~af~gad~vd~~~ 96 (166)
|-+...+. ...+.|+++.|...++...
T Consensus 108 g~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~~~ 159 (255)
T PF04198_consen 108 GGKYYFLPAPAFVDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSSDS 159 (255)
T ss_dssp TSEEE---SBSB-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHHHH
T ss_pred CCcEEEEeCCccCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCCcc
Confidence 55433321 1137999999999998743
No 38
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=96.15 E-value=0.038 Score=50.08 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=72.1
Q ss_pred HHHHHhcCCCCCCEEEECcC---hhHHHHHHHHHHHHhh-----cCCCeEEEcChHH---HHHHHHhCC-Cee-------
Q psy481 13 AYQAVDDNVLNNTAVGIGSG---STVVYAVDRLAERIKA-----EKLKIVCVPTSFQ---ARQLILKNN-MVL------- 73 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~ldsG---sT~~~la~~L~~~~~~-----~~~~ltvVTnS~~---ia~~l~~~~-i~v------- 73 (166)
+++|++ +|+|||+|++|.. .+-..+.++|.++-.. ..+++++++.... ....+...+ ++.
T Consensus 5 aeEAv~-lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~~~~~~g~p~~vtll~~~~~g~~~~~~l~~~g~v~~~is~~~s 83 (485)
T TIGR03458 5 ADEAAA-LIKDGMTVGMSGFTPAGYPKAVPAALAKRAKAAHAAGEPFKITLLTGASTGPELDGVLAEADAIARRLPYQSD 83 (485)
T ss_pred HHHHHH-hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCCccEEEEEecccCCcccccccccCCEEEEecccCC
Confidence 688998 8999999999974 6778888888765221 1136676662221 111111111 221
Q ss_pred --------------eeC---------C-CC-CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCC
Q psy481 74 --------------GDL---------E-TH-PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127 (166)
Q Consensus 74 --------------~~l---------~-~~-~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sK 127 (166)
+.. . .. .++|++++.+.-.|..|++.-+.... ..+.++++|+++|+-++..-
T Consensus 84 p~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~D~~Gn~slg~s~~--~~~~aa~aAk~VIvEVN~~m 160 (485)
T TIGR03458 84 PTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAITEDGRIIPTSSVG--NNPTFLELADKVIVEVNTWQ 160 (485)
T ss_pred HHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeCCCCceEEEecccc--hHHHHHHhCCEEEEEECCCC
Confidence 111 0 11 26899999999999998886664333 23677789999999887654
No 39
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=95.61 E-value=0.13 Score=40.79 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=35.5
Q ss_pred cccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccC
Q psy481 81 DLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLG 133 (166)
Q Consensus 81 ~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~ 133 (166)
.+|++++.+...|++|.+..|-+.. ..+.+++.|+.+|+-+... .=++.|
T Consensus 124 ~~Dvaii~vSp~De~Gy~slG~s~~--~~~~~ie~A~~vI~eVN~~-~P~~~G 173 (198)
T PF02550_consen 124 PIDVAIIQVSPMDEHGYFSLGTSVD--YTKAAIEQAKKVIVEVNPN-MPRTFG 173 (198)
T ss_dssp H-SEEEEEECEE-TTSEEECTTBHB--THHHHHHHTSEEEEEEETT-STS-EE
T ss_pred CCCEEEEEecCcCCCCCEeecHHHH--hHHHHHhcCCeEEEEcCCC-CCCCCC
Confidence 4899999999999998887764433 3468889999999998643 444444
No 40
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=95.55 E-value=0.021 Score=49.16 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHh---cCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc------------ChHHHHHHH-HhC
Q psy481 6 EEAKRIAAYQAVD---DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP------------TSFQARQLI-LKN 69 (166)
Q Consensus 6 ~~~K~~IA~~A~~---~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT------------nS~~ia~~l-~~~ 69 (166)
....+++|+.|+. +.|++||+|+++.|+|+..+++++... ...+++||+ +...++..+ .+.
T Consensus 94 ~~~~~~lg~aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~---~~~~~~vV~l~GG~~~~~~~~~~~~~~~~~A~k~ 170 (321)
T COG2390 94 DSILRRLGRAAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPA---PLRDVKVVQLTGGVGHADGSYNANTIALRLAEKL 170 (321)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEEeccHHHHHHHHhcCcC---ccCCeEEEECCCCCCCCccccCHHHHHHHHHHHh
Confidence 3445557777775 247999999999999999999999753 123676664 333444444 344
Q ss_pred CCeeeeC----------------CC---------CCcccEEEEccccccCCCcc
Q psy481 70 NMVLGDL----------------ET---------HPDLSCVIDGADEVDENLVL 98 (166)
Q Consensus 70 ~i~v~~l----------------~~---------~~~~D~af~gad~vd~~~~~ 98 (166)
+-+-..+ .+ ..+.|++|.|+..+.++..+
T Consensus 171 ~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~~ 224 (321)
T COG2390 171 GAESYLLPAPLVASSPELREALLQEPSVREVLDLARSADLALVGIGSLSANSTL 224 (321)
T ss_pred CCcEEeeecCccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccchh
Confidence 4321111 00 13799999999999876554
No 41
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=95.32 E-value=0.21 Score=45.40 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCCCCEEEE-----CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHH----HHhCCC-e-eee--------------
Q psy481 21 VLNNTAVGI-----GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL----ILKNNM-V-LGD-------------- 75 (166)
Q Consensus 21 I~dg~vI~l-----dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~----l~~~~i-~-v~~-------------- 75 (166)
++|||||-. +.=-.+-++.+.+.++ +-+++|+-++|+.-++. ..+.|. . +..
T Consensus 40 l~dgmtisfhhh~r~gd~v~n~v~~~~~~~---g~k~l~~~~ssl~~~h~~lv~~i~~g~vt~i~~sg~~g~~~~~is~g 116 (492)
T TIGR01584 40 LKDGMTISFHHHFREGDYVVNMVMRIIADM---GFKDLTLAPSSLTSVHDPLVEHIKKGVVTGITSSGLRGTLGDEISKG 116 (492)
T ss_pred CcCCcEEEeeccccCccHHHHHHHHHHHHc---CcCCcEEecccCcchhHHHHHHHhcCeEEEEEeCCcCchHHHHHhcC
Confidence 899999964 4445555666677665 55799999999876552 234442 1 111
Q ss_pred -------C-----------CCCCcccEEEEccccccCCCcccc--C--CcchHHHHHHHHhhCCceEEEEcCC
Q psy481 76 -------L-----------ETHPDLSCVIDGADEVDENLVLIK--G--GGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 76 -------l-----------~~~~~~D~af~gad~vd~~~~~~~--~--~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
+ ....++|+||+++.--|+.+++.. | .++.....+..+++|+++|+.+|.-
T Consensus 117 ~l~~p~~~~shggr~r~i~~g~l~iDVAfI~Vsp~D~~Gn~sg~~G~s~~gslgya~~dA~~A~kVIaevn~~ 189 (492)
T TIGR01584 117 ILKKPVIIRSHGGRARAIETGELHIDVAFLGVPCCDEMGNANGMTGKSPCGSLGYAIVDAQYADKVVAITDSL 189 (492)
T ss_pred CCCCCeEEecCCcHHHHHhcCCCCCCEEEEeCCCcccCCCCcccCCCcccCccchhHHHHHhCCEEEEEECCC
Confidence 0 012379999999999999887751 1 2234445567888999999999864
No 42
>KOG1467|consensus
Probab=95.26 E-value=0.1 Score=47.25 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=73.5
Q ss_pred HHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH-----HHHHHHhCCCeeee--CCC----C
Q psy481 12 AAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ-----ARQLILKNNMVLGD--LET----H 79 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~-----ia~~l~~~~i~v~~--l~~----~ 79 (166)
|-+.|.+ -|+|||+|. -|+++++.+++.+=.+. . .+..+.||-.-.. ....|...|+++.- +.. .
T Consensus 349 I~q~a~~-KI~dgdviltyg~s~vV~~ill~A~~~-~-k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim 425 (556)
T KOG1467|consen 349 ISQHAVT-KIQDGDVLLTYGSSSVVNMILLEAKEL-G-KKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIM 425 (556)
T ss_pred HHHHHHH-HhhcCCEEEEecchHHHHHHHHHHHHh-C-cceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHH
Confidence 4444555 499999765 58888888887774332 1 1234555543322 34456678886432 211 1
Q ss_pred CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCC-ceEEEEcCCCccccc
Q psy481 80 PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTP-KLVIIADHTKQSKNL 132 (166)
Q Consensus 80 ~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~-~~illaD~sKf~~~l 132 (166)
...++.|+||.++-.+|.++.--|.+.+ .++++..+ -|++.|.+.||.+|.
T Consensus 426 ~evtkvfLGahailsNG~vysR~GTa~v--alvAna~nVPVlVCCE~yKF~eRv 477 (556)
T KOG1467|consen 426 LEVTKVFLGAHAILSNGAVYSRVGTACV--ALVANAFNVPVLVCCEAYKFHERV 477 (556)
T ss_pred HhcceeeechhhhhcCcchhhhcchHHH--HHHhcccCCCEEEEechhhhhhhh
Confidence 3689999999999888766554444443 35554333 578889999999885
No 43
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=93.80 E-value=0.45 Score=36.81 Aligned_cols=88 Identities=25% Similarity=0.411 Sum_probs=55.4
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcC-CCeEEEcChH-------------HHHHHHHh-CCCe---eeeC-------
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEK-LKIVCVPTSF-------------QARQLILK-NNMV---LGDL------- 76 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~-~~ltvVTnS~-------------~ia~~l~~-~~i~---v~~l------- 76 (166)
++..+|++.+|||...+.+.|.+....+. .++.++..+. .+...|.+ ..++ +...
T Consensus 19 ~~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~~~i~~~~v~~~~~~~~~~ 98 (169)
T cd00458 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIE 98 (169)
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECccccCCCCCchHHHHHHHHHhhccCCCCHHHeecCCCCCCcH
Confidence 45569999999999999999975422111 2577777776 33333432 2232 1111
Q ss_pred -----------CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 77 -----------ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 77 -----------~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.....+|++++|.. .+|++++++++..+-...+
T Consensus 99 ~~a~~y~~~~~~~~~~~Dl~lLG~G-----------------------~~a~~i~~~~~G~~Ka~~l 142 (169)
T cd00458 99 KACEKYEREILDQVDAIDLAVDGAG-----------------------YRAGTVIVLVDGRKKVDYL 142 (169)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECcC-----------------------ccccEEEEEecChhHHHHH
Confidence 12236799999888 5778888888887644433
No 44
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=93.16 E-value=0.14 Score=43.79 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHh---cCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 7 EAKRIAAYQAVD---DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 7 ~~K~~IA~~A~~---~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
+..+++|+.|++ +++++|++|+++.|+|+..+++++.... ..++++||+-
T Consensus 96 ~~~~~vg~~aA~~L~~~l~~~~~IGvswG~Tl~~~~~~l~~~~--~~~~~~vV~l 148 (318)
T PRK15418 96 DIGGRLGIGAAHMLMSLLQPQQLLAVGFGEATMNTLQHLSGFI--SSQQIRLVTL 148 (318)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCEEEEcchHHHHHHHHhccccC--CCCCCEEEEc
Confidence 345678888875 1468999999999999999999986310 1247888764
No 45
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=92.28 E-value=0.98 Score=40.51 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=54.2
Q ss_pred CCCCCEEEE-----CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH----HHHhCCC-e-eee--------------
Q psy481 21 VLNNTAVGI-----GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ----LILKNNM-V-LGD-------------- 75 (166)
Q Consensus 21 I~dg~vI~l-----dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~----~l~~~~i-~-v~~-------------- 75 (166)
++|||||-. +.=-.+-++.+.|.++ +-+++|+-++|+.-++ ...+.|. . +..
T Consensus 17 lkDGMTISFHHH~RnGD~V~nmVm~~i~~m---GiKdLtiaaSSl~~~h~~lv~~I~~GvVt~I~tsg~rG~lg~aiS~G 93 (466)
T PF04223_consen 17 LKDGMTISFHHHLRNGDYVLNMVMDEIAEM---GIKDLTIAASSLFPVHDPLVEHIKSGVVTRIETSGMRGPLGEAISEG 93 (466)
T ss_dssp --TT-EEEE--TTGGGB-HHHHHHHHHHHT---T--SEEEEES---GGGGGHHHHHHTTSEEEEEESEEHHHHHHHHHCT
T ss_pred CcCCcEEEeehhccCccHHHHHHHHHHHHc---CCCCcEEecccchhhHHHHHHHHhcCeeeEEEeCCcCchHHHHHhCC
Confidence 789999975 3334445555666654 4479999999998655 2234553 1 111
Q ss_pred -------C-----------CCCCcccEEEEccccccCCCccccCCc----chHHHHHHHHhhCCceEEEEcC
Q psy481 76 -------L-----------ETHPDLSCVIDGADEVDENLVLIKGGG----GCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 76 -------l-----------~~~~~~D~af~gad~vd~~~~~~~~~~----~a~~~ek~i~~~A~~~illaD~ 125 (166)
+ ....++|+||++|-.-|+-+|+.--.| +.+=+-..=++.|++++++.|+
T Consensus 94 ~l~~Pvi~rSHGGR~raIe~Ge~~IDVAFi~AP~~D~~GN~nG~~G~saCGsLGYa~~DA~yA~~VV~iTD~ 165 (466)
T PF04223_consen 94 KLKKPVIIRSHGGRARAIESGELHIDVAFIAAPSCDEYGNANGVGGKSACGSLGYAMVDAQYADKVVAITDN 165 (466)
T ss_dssp --SS-EEE-BHHHHHHHHHCTSS--SEEEEEESEEETTS-EESSSSSS--S--CCHHHHHHH-SEEEEEESS
T ss_pred CCCCCEEEeCCCCchhheecCCcceEEEEEcCCccccccCcCCCcCCccccccccchhhHHhcCcEEEEecC
Confidence 0 112389999999999998777633222 1111223446789999999996
No 46
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=92.03 E-value=0.8 Score=41.64 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=70.5
Q ss_pred HHHHHHhcCCCCCCEEEEC--cChhHHHHHHHHHHHHhhcC-----CCe-EEEcChHH--HHHHHHhCCC--e-----ee
Q psy481 12 AAYQAVDDNVLNNTAVGIG--SGSTVVYAVDRLAERIKAEK-----LKI-VCVPTSFQ--ARQLILKNNM--V-----LG 74 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~ld--sGsT~~~la~~L~~~~~~~~-----~~l-tvVTnS~~--ia~~l~~~~i--~-----v~ 74 (166)
=+.+|+. +|++||.|+.+ ++-+-..+.++|.+|.+... +.+ ++.+-|.. .-..+.+.+. + +.
T Consensus 18 t~~Eaa~-~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~~~~~~~l~i~~~~gas~~~~~~~~~~~a~~~~~r~p~q~~ 96 (501)
T COG0427 18 TPEEAAS-LIKDGDHLGMSFTGAGEPKALPEALARRAEANHGELKDLRVLLFTGASIGADEDLKLAEAGEVIRRAPYQVY 96 (501)
T ss_pred CHHHHHH-hhcCCCEEeecccCCCCchhhHHHHHHHHHhcccccCceEEEEEeccccCcchhhhhhcccchhhhCccccC
Confidence 3889999 99999999998 44566677777776533221 122 33344443 2223333321 1 10
Q ss_pred e------------------------C--CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCC
Q psy481 75 D------------------------L--ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127 (166)
Q Consensus 75 ~------------------------l--~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sK 127 (166)
. + +....+|++++-+..+++++.++.+.+-... +..+..|++||+-+.+.-
T Consensus 97 ~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i~~~G~~i~g~svg~~--~~~~~~A~kVIveVN~~~ 173 (501)
T COG0427 97 SPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAIDEHGYIIPGTSVGNS--KSWAEGAEKVIVEVNKYM 173 (501)
T ss_pred HHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccccCCceEeeccccCCc--HHHHhhccEEEEEhhccC
Confidence 0 0 1122489999999999999888776554443 346789999998776543
No 47
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=91.61 E-value=0.63 Score=41.20 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=68.1
Q ss_pred HHHhcC-CCCCCEEEE-----CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHH----HHhCCC--eeeeC------
Q psy481 15 QAVDDN-VLNNTAVGI-----GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL----ILKNNM--VLGDL------ 76 (166)
Q Consensus 15 ~A~~~~-I~dg~vI~l-----dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~----l~~~~i--~v~~l------ 76 (166)
+|..+- ++|||+|-. |.-.++-.+.+.|.++ +.+|++.-++|+...+. -.+.|+ +++.-
T Consensus 55 EaI~~sGlkdGMTiSFHH~fR~GD~vvN~Vm~~Ia~m---GfKnLtlA~SSl~~~h~pliehIknGVVt~I~sSGlRg~l 131 (513)
T COG3051 55 EAIRRSGLKDGMTISFHHAFRGGDLVVNMVMDVIAKM---GFKNLTLASSSLSDCHAPLVEHIKNGVVTRIYSSGLRGPL 131 (513)
T ss_pred HHHHHhCccCCeEEEeeehhcCCceeHHHHHHHHHHh---CccceeeccchhhhhhHHHHHHHhcCEeeeEeeccccchH
Confidence 444333 799999954 6667777777777765 55799999999887652 234453 22210
Q ss_pred --------------------------CCCCcccEEEEccccccCCCcc--ccCCc--chHHHHHHHHhhCCceEEEEcCC
Q psy481 77 --------------------------ETHPDLSCVIDGADEVDENLVL--IKGGG--GCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 77 --------------------------~~~~~~D~af~gad~vd~~~~~--~~~~~--~a~~~ek~i~~~A~~~illaD~s 126 (166)
....++|+||+|+-.-|+=+++ .+|.. +..=+-++=++.|+++++|.|+=
T Consensus 132 g~~IS~Gll~~PV~i~SHGGRv~~i~sGel~IDvAFlgvP~cDe~GNaNG~~GKa~cGSlGYA~vDA~yAd~VV~lTe~l 211 (513)
T COG3051 132 GEEISRGLLAEPVQIHSHGGRVHLVQSGELHIDVAFLGVPSCDEFGNANGFTGKACCGSLGYAMVDAQYADQVVMLTEEL 211 (513)
T ss_pred HHHHhhhHhhCCeEEeccCceEEEeecCceeEEEEEecCCChhhhcCcCCCcCccccccccceeechhhcceEEEehhhc
Confidence 0123899999998777754433 11111 22222245578899999998863
No 48
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=90.79 E-value=4.7 Score=35.04 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhcCCCCCCEEE--ECcChh-------HHHHHHHHHHHHhhcCCCeEEEcChH--------HHHHHHHhC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVG--IGSGST-------VVYAVDRLAERIKAEKLKIVCVPTSF--------QARQLILKN 69 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~--ldsGsT-------~~~la~~L~~~~~~~~~~ltvVTnS~--------~ia~~l~~~ 69 (166)
+.-++|++.-++ ++++|+.|. ..+|+- .+-+++..... .+++.|+..-. -++-+|.+.
T Consensus 134 e~n~~iG~~G~~-ll~~~~~VLThCNaGaLAt~~~GTAlgviR~a~~~----gk~i~v~a~ETRP~lQGARLTawEL~~~ 208 (346)
T COG0182 134 EANRAIGENGAE-LLPDGDTVLTHCNAGALATVGYGTALGVIRSAHEE----GKDIRVFADETRPYLQGARLTAWELVQD 208 (346)
T ss_pred HHHHHHHHHHHH-hhccCCeEEeeecCCceeecCccchHHHHHHHHHC----CCeeEEEeCCCccccccceeeHHHHhhc
Confidence 344678999999 999999876 344432 33344544432 24677766533 246788999
Q ss_pred CCeeeeCCC--------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCccc
Q psy481 70 NMVLGDLET--------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIP 141 (166)
Q Consensus 70 ~i~v~~l~~--------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~p 141 (166)
|+++..+-+ ...+|.++.|||-|-.+|...+--|... .--+..+..-.+|+.+..|-|...+.. + -.+|
T Consensus 209 GIpvtLItD~aag~~M~~g~Id~viVGADRI~~nGdvaNKIGTY~-lAvlAk~~gIPFyVaAP~sTiD~~~~~-G-~~I~ 285 (346)
T COG0182 209 GIPVTLITDNAAGHLMQQGMIDAVIVGADRIAANGDVANKIGTYQ-LAVLAKHHGIPFYVAAPLSTIDFELKS-G-EDIP 285 (346)
T ss_pred CCceEEEeccHHHHHHHhCCCcEEEEccceeecCCcchhhhhHHH-HHHHHHHcCCCeEEEcccCccccccCC-C-Cccc
Confidence 998776522 2369999999999988874432222111 111223445589999999999888853 1 2588
Q ss_pred EEE
Q psy481 142 IEV 144 (166)
Q Consensus 142 vev 144 (166)
||=
T Consensus 286 IEE 288 (346)
T COG0182 286 IEE 288 (346)
T ss_pred eee
Confidence 874
No 49
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=88.65 E-value=0.75 Score=41.86 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCC------CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEE
Q psy481 6 EEAKRIAAYQAVDDNV------LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC 55 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I------~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltv 55 (166)
.+..++||+.+++ +| +||.++=+|.|..-.+++++|.++.+ .++++-
T Consensus 229 ~p~e~~IA~~vA~-lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~mk--dlGIht 281 (492)
T TIGR01584 229 DPKELLIAKMAND-VIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKMI--DHNIKA 281 (492)
T ss_pred CHHHHHHHHHHHH-HHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHHH--hCCCcc
Confidence 4567889999999 87 89999999999999999999987632 245444
No 50
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=87.87 E-value=8.6 Score=35.48 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=61.4
Q ss_pred CCCCCCEEEECcCh--hHHHHHHHHHHHHhhcCCCeEEEcC--hHHHHHHHHhCCC--eee-------------------
Q psy481 20 NVLNNTAVGIGSGS--TVVYAVDRLAERIKAEKLKIVCVPT--SFQARQLILKNNM--VLG------------------- 74 (166)
Q Consensus 20 ~I~dg~vI~ldsGs--T~~~la~~L~~~~~~~~~~ltvVTn--S~~ia~~l~~~~i--~v~------------------- 74 (166)
.|+|||+|.|..=+ -..++++.|.+-++.+..+++.|-. +...-..|-..|+ ++.
T Consensus 37 ~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~~R~~~av~~G~ 116 (543)
T TIGR01110 37 VIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQSLRIAQLLEDGK 116 (543)
T ss_pred hCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcchHHHHHHHHcCC
Confidence 79999999997643 2344455443322222235666655 4444444455554 221
Q ss_pred ----eCCC----------CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCC----ceEEEEcC
Q psy481 75 ----DLET----------HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTP----KLVIIADH 125 (166)
Q Consensus 75 ----~l~~----------~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~----~~illaD~ 125 (166)
.+.. ..++|++++-+.-.|.++++..|.... .+..++++|+ .+|+-++.
T Consensus 117 id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~GN~slG~s~~--~~~aaaeAAk~~agiVIVEVNe 183 (543)
T TIGR01110 117 LEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRDGNLYTGPNTE--DTPAIVEATAFRDGIVIAQVNE 183 (543)
T ss_pred eeEeehhchHhhhhhhhhccCCcEEEEECCcCCCCCeEEecCccc--chHHHHHhhhhcCCEEEEEECc
Confidence 1111 136899999999999999986544322 2356666766 77776665
No 51
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=87.44 E-value=1.5 Score=34.90 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCCCCEEEEC----cChhHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 12 AAYQAVDDNVLNNTAVGIG----SGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~ld----sGsT~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
++..+++ +|+|||+|++| +| +-..++.+|.++ ...+++++.+.-
T Consensus 4 ~~eAva~-~I~dG~~v~~GG~~~~~-~P~al~~~l~r~---~~~~l~~~~~~~ 51 (217)
T PF01144_consen 4 LAEAVAR-LIRDGDTVAVGGFGSSG-IPMALVRELARQ---GHRDLTLVISEA 51 (217)
T ss_dssp HHHHHTC-T--TTEEEEE-SBTTBT-HHHHHHHHHHHH---TTTSEEEEESTT
T ss_pred HHHHHhc-cCCCCCEEEECCCcccC-cHHHHHHHHHhc---CCCCcEEEEeCC
Confidence 3444444 89999999999 66 444666677643 123555444433
No 52
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=86.30 E-value=9 Score=34.29 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=65.8
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH-HhCCCeeeeCCCC----CcccEEEEccccccCC
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI-LKNNMVLGDLETH----PDLSCVIDGADEVDEN 95 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l-~~~~i~v~~l~~~----~~~D~af~gad~vd~~ 95 (166)
+++-.+++||+|-+...+|++|..+ +-..++|.-=+..-|..| .+.+.....+.+. ...|+.|.+..+-++-
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~---g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEK---GVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhC---CCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 5566699999999999999999865 334688888888888866 5788777776542 4799999988876543
Q ss_pred CccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 96 LVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 96 ~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
.. ....+..+..+ ++ .+++|=.
T Consensus 253 i~-------~~~ve~a~~~r-~~-~livDia 274 (414)
T COG0373 253 IT-------REMVERALKIR-KR-LLIVDIA 274 (414)
T ss_pred cC-------HHHHHHHHhcc-cC-eEEEEec
Confidence 21 11234555433 22 7777744
No 53
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=83.87 E-value=5.2 Score=36.03 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=59.8
Q ss_pred HHHHHHHHHh-----cCCCCCCEEEECcChhHHHHHHHHHHHHhhcC-C---CeEEEcChHHHHHHHHhCCC-e-eeeC-
Q psy481 9 KRIAAYQAVD-----DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK-L---KIVCVPTSFQARQLILKNNM-V-LGDL- 76 (166)
Q Consensus 9 K~~IA~~A~~-----~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~-~---~ltvVTnS~~ia~~l~~~~i-~-v~~l- 76 (166)
...||+.|++ -|++||-..--|+|-+.++++++|++.+++++ + .+=-||.-+ . .|.+.|+ + +...
T Consensus 209 ~L~IA~~aa~vI~asg~~kdGFSfQtGaGGaSLAv~~~l~~~M~~~~Ik~sFa~GGIT~~~--v-~mleeGL~~~l~DvQ 285 (466)
T PF04223_consen 209 ELLIAEYAAKVIEASGYFKDGFSFQTGAGGASLAVARFLREKMREKGIKGSFALGGITGYM--V-DMLEEGLFRKLLDVQ 285 (466)
T ss_dssp HHHHHHHHHHHHHCTTT-STTEEEE--SSHHHHHHHHHHHHHHHHTT--EEEEECEE-HHH--H-HHHHTTSECEEEECE
T ss_pred HHHHHHHHHHHHHhCcceecCceEEcCCchHHHHHHHHHHHHHHHcCcEEEEECCcccHHH--H-HHHHcccchhheecc
Confidence 3567777665 15699999999999999999999987655432 1 111233221 1 2334443 2 1110
Q ss_pred -------------------------C------CCCcccEEEEccccccCCCcc--ccCCcc-------hHHHHHHHHhhC
Q psy481 77 -------------------------E------THPDLSCVIDGADEVDENLVL--IKGGGG-------CLTQEKIVASCT 116 (166)
Q Consensus 77 -------------------------~------~~~~~D~af~gad~vd~~~~~--~~~~~~-------a~~~ek~i~~~A 116 (166)
+ ...+.|+.++||-+||.+||. +.+..+ -+- -. +.-|
T Consensus 286 ~FDl~Av~S~~~np~H~eisas~YAnP~nkg~~vn~LD~viLgAlEvD~dFNVNV~TgSdG~i~Ga~GGH~--Dt-AagA 362 (466)
T PF04223_consen 286 CFDLDAVESIRENPNHQEISASEYANPHNKGAVVNQLDVVILGALEVDTDFNVNVLTGSDGVIRGASGGHP--DT-AAGA 362 (466)
T ss_dssp ESSHHHHHHHHHTTTEEE--HHHHC-TTSS--GGGG-SEEEE--SEEETT--EE-SB-TTS-B-CE-CTHH--HH-HHHS
T ss_pred cCCHHHHHHHHhCCCcEEEcHHHhcCCCCCCcccccccEEEEeeeeeccccceeEEECCCceEecCCCCCc--ch-hhhc
Confidence 0 013799999999999988865 333322 222 12 3467
Q ss_pred CceEEEEcCCC
Q psy481 117 PKLVIIADHTK 127 (166)
Q Consensus 117 ~~~illaD~sK 127 (166)
+-.|+++...+
T Consensus 363 kltIiv~PL~r 373 (466)
T PF04223_consen 363 KLTIIVAPLVR 373 (466)
T ss_dssp SEEEEE--SEE
T ss_pred CeEEEEchhhc
Confidence 88888887643
No 54
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=81.40 E-value=7.2 Score=27.29 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=45.3
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCC----------CCcccEEEEccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLET----------HPDLSCVIDGAD 90 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~----------~~~~D~af~gad 90 (166)
+|.+|.|.....+++.|.+. ..++++|..+.+....+...+.+++.-+. ..+.|..+...+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~----~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG----GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT----TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC----CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence 57899999999999999864 13699999999999999888877665321 235666666554
No 55
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=73.53 E-value=0.57 Score=31.41 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVY 37 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~ 37 (166)
.+.|.+-+++++..+|++|-..|--|||||.+
T Consensus 30 pd~k~R~vKKi~~~LV~Eg~l~yWSSGSTTmY 61 (67)
T PF08679_consen 30 PDAKPREVKKIVNELVNEGKLEYWSSGSTTMY 61 (67)
T ss_dssp TTS-HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CCcCHHHHHHHHHHHHhhCeEEEEcCCCcEEe
Confidence 34567777788776999999999999999854
No 56
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=72.30 E-value=10 Score=27.93 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=53.7
Q ss_pred HHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hC---CCeeeeCCCC----Cccc
Q psy481 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KN---NMVLGDLETH----PDLS 83 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~---~i~v~~l~~~----~~~D 83 (166)
+|++... -++...++.||+|-+...++.+|..+ +-.+++++.-+.+-+..+. .. ++....+.+. ..+|
T Consensus 2 la~~~~~-~l~~~~vlviGaGg~ar~v~~~L~~~---g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~D 77 (135)
T PF01488_consen 2 LAKKKFG-DLKGKRVLVIGAGGAARAVAAALAAL---GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEAD 77 (135)
T ss_dssp HHCTHHS-TGTTSEEEEESSSHHHHHHHHHHHHT---TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTES
T ss_pred hhHHhcC-CcCCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCC
Confidence 4566665 48889999999999999999999875 3346999988888777663 33 3456665543 2688
Q ss_pred EEEEcccc
Q psy481 84 CVIDGADE 91 (166)
Q Consensus 84 ~af~gad~ 91 (166)
+.|-....
T Consensus 78 ivI~aT~~ 85 (135)
T PF01488_consen 78 IVINATPS 85 (135)
T ss_dssp EEEE-SST
T ss_pred eEEEecCC
Confidence 77764443
No 57
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=64.54 E-value=7.2 Score=30.96 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=25.4
Q ss_pred HHHHHHhcCCCC--CCEEEECcChhHHHHHHHHHH
Q psy481 12 AAYQAVDDNVLN--NTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 12 IA~~A~~~~I~d--g~vI~ldsGsT~~~la~~L~~ 44 (166)
+|+...+ .+++ +.+|++..|+|...+.+.|..
T Consensus 7 ~a~~l~~-~i~~~~~~~i~lsgG~T~~~~~~~l~~ 40 (232)
T cd01399 7 AAELIAE-LIREKPPAVLGLATGSTPLGVYEELIE 40 (232)
T ss_pred HHHHHHH-HHHhCCCcEEEEcCCCCHHHHHHHHHH
Confidence 4444444 5666 789999999999999999974
No 58
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=56.03 E-value=24 Score=23.14 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=25.4
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ 61 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ 61 (166)
++.+|+|-+-.++|..|.+. ...+|++..+-.
T Consensus 2 vvViGgG~ig~E~A~~l~~~----g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL----GKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT----TSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHh----CcEEEEEeccch
Confidence 68899999999999999864 236888876543
No 59
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=55.40 E-value=51 Score=27.07 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCCC-CEEEECcChh---------------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCee
Q psy481 10 RIAAYQAVDDNVLNN-TAVGIGSGST---------------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVL 73 (166)
Q Consensus 10 ~~IA~~A~~~~I~dg-~vI~ldsGsT---------------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v 73 (166)
..+.+.|.+ ++++| |+|=||.+|| +..+++.|.+. ....+.+=|.+.+++..+-+.+..+
T Consensus 24 ~~~~~~a~~-~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~---~~~piSIDT~~~~v~~aaL~~g~~i 99 (258)
T cd00423 24 DKALEHARR-MVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGE---PDVPISVDTFNAEVAEAALKAGADI 99 (258)
T ss_pred HHHHHHHHH-HHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhc---CCCeEEEeCCcHHHHHHHHHhCCCE
Confidence 445666777 78888 7999999999 44444444321 1234778889999988777777654
Q ss_pred e
Q psy481 74 G 74 (166)
Q Consensus 74 ~ 74 (166)
+
T Consensus 100 I 100 (258)
T cd00423 100 I 100 (258)
T ss_pred E
Confidence 4
No 60
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=55.20 E-value=18 Score=33.03 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcCCC----CC------CEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH
Q psy481 6 EEAKRIAAYQAVDDNVL----NN------TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ 61 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~----dg------~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ 61 (166)
.+.-++||+..++ +|+ || ++|=+|-|+.-.+++..|.++ ..+++-|-|-=+.
T Consensus 222 ~~~~~~Ia~~va~-~i~~~~~dG~~~~~~~tlQ~GiG~ipnAv~~~L~~~---~~kdLgihtem~~ 283 (485)
T TIGR03458 222 DEVSQKIAGHLID-FLDHEVKAGRLPKNLLPLQSGVGNIANAVLAGLGDS---PFENLTMYTEVIQ 283 (485)
T ss_pred CHHHHHHHHHHHH-HHHHHHhcCCCCCCCCceeecCChHHHHHHHHHhcC---CCCCceEEeeech
Confidence 4567889999999 876 88 999999999999999999763 1125555554443
No 61
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=53.31 E-value=49 Score=30.19 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=41.3
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeC
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL 76 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l 76 (166)
+.+|.+|.|..-..+++.|.++ +.++++|-++.+-...+++.+.+++.-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~----g~~vvvId~d~~~~~~~~~~g~~~i~G 466 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA----GIPLVVIETSRTRVDELRERGIRAVLG 466 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHCCCeEEEc
Confidence 7899999999999999999764 237999999999888888888776653
No 62
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=52.16 E-value=19 Score=29.24 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.1
Q ss_pred CCCEEEECcChhHHHHHHHHHH
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~ 44 (166)
++++|+|..|+|...+.+.|.+
T Consensus 33 ~~~~iglsgG~T~~~~~~~L~~ 54 (261)
T PRK00443 33 RPFVLGLATGSSPLETYKALIE 54 (261)
T ss_pred CceEEEecCCCCHHHHHHHHHH
Confidence 6789999999999999999984
No 63
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=48.81 E-value=13 Score=23.71 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=23.7
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHh
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIK 47 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~ 47 (166)
.+||...-+-.|+|+..+|+.|...+.
T Consensus 5 lpdG~~~~~~~g~T~~d~A~~I~~~l~ 31 (60)
T PF02824_consen 5 LPDGSIKELPEGSTVLDVAYSIHSSLA 31 (60)
T ss_dssp ETTSCEEEEETTBBHHHHHHHHSHHHH
T ss_pred CCCCCeeeCCCCCCHHHHHHHHCHHHH
Confidence 489999999999999999999976543
No 64
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=48.17 E-value=61 Score=24.96 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=39.8
Q ss_pred CEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCC
Q psy481 25 TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLE 77 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~ 77 (166)
.+||=..|.|.-.+++.+..........++|||++-.+.......|...+...
T Consensus 69 ~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ 121 (166)
T PF05991_consen 69 EVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSE 121 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHH
Confidence 47777888888888888865533213479999999999988888887666543
No 65
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=47.80 E-value=98 Score=27.55 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=46.0
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCC-CeeeeCCC----CCcccEEEEcccc
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNN-MVLGDLET----HPDLSCVIDGADE 91 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~-i~v~~l~~----~~~~D~af~gad~ 91 (166)
+++-.++.||+|-+...++++|..+ +...++++.-+..-+..+. ..+ .....+.+ ....|+.|-+...
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~---g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTAL---APKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHc---CCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC
Confidence 3455699999999999999999864 2235888887877777664 444 44444332 2357777766554
No 66
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=45.45 E-value=42 Score=30.87 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcChh---HHHHHHHHHHHHhh-c-CCCeEEEcC
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGST---VVYAVDRLAERIKA-E-KLKIVCVPT 58 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGsT---~~~la~~L~~~~~~-~-~~~ltvVTn 58 (166)
|..=|.+|+. +|+||+||.+.+-.- -.+++++|.++... + ..++|++-.
T Consensus 4 K~isa~ea~~-~I~DG~~vavsgf~~a~~Pe~ll~al~~r~~~tghPr~Lt~i~~ 57 (527)
T COG4670 4 KVISAQEAAA-LIKDGATVAVSGFNGAGCPEELLKALGERYLETGHPRDLTFISP 57 (527)
T ss_pred ccccHHHHHh-hCCCCCEEEeccccccCCHHHHHHHHHHHHHhhCCCCceEEEcc
Confidence 5556889999 999999999976553 34566666654322 2 257888754
No 67
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=45.27 E-value=23 Score=28.18 Aligned_cols=34 Identities=24% Similarity=0.204 Sum_probs=24.6
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
|++-|++. ||||.|..++.+.|..| +..++.++|
T Consensus 91 i~grdVLiVeDIiDsG~TLs~i~~~l~~r---~a~sv~i~t 128 (178)
T COG0634 91 IKGRDVLIVEDIIDSGLTLSKVRDLLKER---GAKSVRIAT 128 (178)
T ss_pred CCCCeEEEEecccccChhHHHHHHHHHhC---CCCeEEEEE
Confidence 66677775 68999999999999876 223454444
No 68
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=44.53 E-value=33 Score=24.03 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=15.7
Q ss_pred EECcChhHHHHHHHHHHH
Q psy481 28 GIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 28 ~ldsGsT~~~la~~L~~~ 45 (166)
.++||+|+..+++.|++.
T Consensus 97 vi~tG~Tl~~~~~~L~~~ 114 (125)
T PF00156_consen 97 VIDTGGTLKEAIELLKEA 114 (125)
T ss_dssp EESSSHHHHHHHHHHHHT
T ss_pred eEcccHHHHHHHHHHHhC
Confidence 467999999999999865
No 69
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=44.12 E-value=1.9e+02 Score=24.26 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=43.2
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH-HhCCCeeeeCCC----CCcccEEEEcccc
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI-LKNNMVLGDLET----HPDLSCVIDGADE 91 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l-~~~~i~v~~l~~----~~~~D~af~gad~ 91 (166)
....+..+|+|..-..+++.|... +...++++..+..-+..+ .+.+........ ....|+.|.....
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~---g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAK---GVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGA 248 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHc---CCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCC
Confidence 445588899999999999999763 223687887777766544 455654433221 1246777765443
No 70
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=44.09 E-value=21 Score=27.38 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCCCCEE---EECcChhHHHHHHHHH
Q psy481 12 AAYQAVDDNVLNNTAV---GIGSGSTVVYAVDRLA 43 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI---~ldsGsT~~~la~~L~ 43 (166)
+.+..++.+-++||+| |.|||||..+ |..|.
T Consensus 180 l~~~lI~~~t~~gdiVlDpF~GSGTT~~a-a~~l~ 213 (231)
T PF01555_consen 180 LIERLIKASTNPGDIVLDPFAGSGTTAVA-AEELG 213 (231)
T ss_dssp HHHHHHHHHS-TT-EEEETT-TTTHHHHH-HHHTT
T ss_pred HHHHHHHhhhccceeeehhhhccChHHHH-HHHcC
Confidence 3344443244789998 6899998865 44444
No 71
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=42.50 E-value=64 Score=26.95 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
....+||+++.+.+++ .+...-.|..|.|+++...++..+.....+-..+.++++..
T Consensus 54 ~Lt~eEr~~v~~~~~~-~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 54 SLTPAEYEQVVEIAVS-TAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 4567899999999998 77766667777777666555554432111223566666643
No 72
>PRK10494 hypothetical protein; Provisional
Probab=42.20 E-value=1.1e+02 Score=25.23 Aligned_cols=65 Identities=8% Similarity=0.024 Sum_probs=48.4
Q ss_pred HHHHHHHHhcC-CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH---HHHhCCCeeeeCC
Q psy481 10 RIAAYQAVDDN-VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ---LILKNNMVLGDLE 77 (166)
Q Consensus 10 ~~IA~~A~~~~-I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~---~l~~~~i~v~~l~ 77 (166)
+..++.+.+ + |.+.+++.-+.+++|.+=|++..+.+ +..++.+||+...... .+.+.|++++...
T Consensus 140 ~~~~~~l~~-lGVp~~~Ii~e~~s~nT~eNa~~~~~~~--~~~~iiLVTsa~Hm~RA~~~f~~~Gl~v~p~P 208 (259)
T PRK10494 140 EVGARVAQS-LGVPREDIITLDLPKDTEEEAAAVKQAI--GDAPFLLVTSASHLPRAMIFFQQEGLNPLPAP 208 (259)
T ss_pred HHHHHHHHH-cCCCHHHeeeCCCCCCHHHHHHHHHHHh--CCCCEEEECCHHHHHHHHHHHHHcCCceeecC
Confidence 345666666 5 88888999999999999888877653 2246999999999866 3367888877653
No 73
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=41.94 E-value=58 Score=26.00 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=15.7
Q ss_pred EECcChhHHHHHHHHHHH
Q psy481 28 GIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 28 ~ldsGsT~~~la~~L~~~ 45 (166)
.||+|.|....|+.|+++
T Consensus 92 iIdtg~Tl~~aA~~Lk~~ 109 (184)
T PF14572_consen 92 IIDTGGTLIKAAELLKER 109 (184)
T ss_dssp EESSTHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHc
Confidence 478999999999999865
No 74
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=41.88 E-value=98 Score=25.61 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=39.6
Q ss_pred CCCCC-CEEEECc--ChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH---HhCCCeeeeC-CC----------CCcc
Q psy481 20 NVLNN-TAVGIGS--GSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI---LKNNMVLGDL-ET----------HPDL 82 (166)
Q Consensus 20 ~I~dg-~vI~lds--GsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l---~~~~i~v~~l-~~----------~~~~ 82 (166)
.|++| .+++||+ |||+.++++..... --+-.|=.|......| ++..-+++.+ .+ ...+
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~-----G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~V 144 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPD-----GVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMV 144 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTT-----SEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--E
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCC-----CcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccc
Confidence 36777 5888985 89999999887643 1366788888776643 3444444432 11 1357
Q ss_pred cEEEEcccc
Q psy481 83 SCVIDGADE 91 (166)
Q Consensus 83 D~af~gad~ 91 (166)
|+.|.....
T Consensus 145 DvI~~DVaQ 153 (229)
T PF01269_consen 145 DVIFQDVAQ 153 (229)
T ss_dssp EEEEEE-SS
T ss_pred cEEEecCCC
Confidence 877766553
No 75
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=41.61 E-value=1.2e+02 Score=21.97 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=43.9
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCC----------------CCCcccEEEEcc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLE----------------THPDLSCVIDGA 89 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~----------------~~~~~D~af~ga 89 (166)
+..+|+|..-..+|-+|.+. ..++++++.+- .+..+.+.++.+..-. ....+|..|+.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~----g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA----GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT----TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred CEEECcCHHHHHHHHHHHHC----CCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
Confidence 35689999999999999753 23799999999 5555777776554332 123578888877
Q ss_pred cccc
Q psy481 90 DEVD 93 (166)
Q Consensus 90 d~vd 93 (166)
-+.+
T Consensus 76 Ka~~ 79 (151)
T PF02558_consen 76 KAYQ 79 (151)
T ss_dssp SGGG
T ss_pred cccc
Confidence 6654
No 76
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=40.40 E-value=49 Score=27.40 Aligned_cols=52 Identities=8% Similarity=0.113 Sum_probs=38.4
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.-|++.+-||+|+..|.+.+.+.....-.+..++.-|-.++..+.+.|++.+
T Consensus 190 ~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~rtA~~a~~~G~~~v 241 (266)
T PRK08811 190 PRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSDRLLDAAHAAGFIHV 241 (266)
T ss_pred CCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCHHHHHHHHHcCCCce
Confidence 4689999999999999988754210001256678889999999999887543
No 77
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=40.36 E-value=80 Score=24.11 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=53.0
Q ss_pred EECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH-H---HHHHHhCCCeeeeCC--------------------CCC--c
Q psy481 28 GIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ-A---RQLILKNNMVLGDLE--------------------THP--D 81 (166)
Q Consensus 28 ~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~-i---a~~l~~~~i~v~~l~--------------------~~~--~ 81 (166)
|||||-|+.. +.|... .....++-+|.|.+. + +..+.+.+.++..+. ... +
T Consensus 8 fLGsGKTTli--~~ll~~-~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~ 84 (178)
T PF02492_consen 8 FLGSGKTTLI--NHLLKR-NRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEER 84 (178)
T ss_dssp STTSSHHHHH--HHHHHH-HTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC
T ss_pred CCCCCHHHHH--HHHHHH-hcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCC
Confidence 7899999963 554421 112357889998776 2 234566777665442 223 6
Q ss_pred ccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcc
Q psy481 82 LSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQS 129 (166)
Q Consensus 82 ~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~ 129 (166)
+|..|+-++|+..-..+... ...+. ..... ..+|.++|...|.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~--~~~~~--~~~~~-~~iI~vVDa~~~~ 127 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQ--DPPLK--EDFRL-DSIITVVDATNFD 127 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHH--SHHHH--HHESE-SEEEEEEEGTTHG
T ss_pred cCEEEECCccccccchhhhc--ccccc--ccccc-cceeEEecccccc
Confidence 89999988887432222100 11222 12222 5789999998883
No 78
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=39.87 E-value=94 Score=29.05 Aligned_cols=49 Identities=12% Similarity=-0.021 Sum_probs=41.1
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
.+.+|.+|.|..-..+++.|.++ +.++++|-++.+-...+++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~----g~~vvvID~d~~~v~~~~~~g~~v~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS----GVKMTVLDHDPDHIETLRKFGMKVFY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhcCCeEEE
Confidence 46899999999999999999864 23799999999988888888877654
No 79
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=38.85 E-value=43 Score=31.07 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCCCC---EEEECcChhHHHHHHHHHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNT---AVGIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~---vI~ldsGsT~~~la~~L~~~ 45 (166)
.+..++||+.+++ .|.||+ +|=+|-|....++...|..+
T Consensus 222 se~~~~ia~~v~~-~I~dg~~v~tLq~GIG~~p~AI~~~L~~~ 263 (543)
T TIGR01110 222 TDVQVLMAMMAIK-GIYAEYQVQRLNHGIGFNTAAIELLLPTY 263 (543)
T ss_pred CHHHHHHHHHHHh-hCcCCCcCceeeeccCcCHHHHHHHhccc
Confidence 4677899999999 999999 99999999999999999864
No 80
>PRK10646 ADP-binding protein; Provisional
Probab=38.79 E-value=62 Score=24.93 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEE----CcChhHHHHHHHHHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGI----GSGSTVVYAVDRLAER 45 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~l----dsGsT~~~la~~L~~~ 45 (166)
.++=+++|++-++ .+++|++|.| |+|-|+. ++.|.+.
T Consensus 11 ~~~t~~l~~~la~-~l~~g~vi~L~GdLGaGKTtf--~rgl~~~ 51 (153)
T PRK10646 11 EQATLDLGARVAK-ACDGATVIYLYGDLGAGKTTF--SRGFLQA 51 (153)
T ss_pred HHHHHHHHHHHHH-hCCCCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 3445667887787 8999999985 8899984 4777653
No 81
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=38.75 E-value=1e+02 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.300 Sum_probs=30.2
Q ss_pred CCCCCCE---EEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 20 NVLNNTA---VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 20 ~I~dg~v---I~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
.+++||+ ||.|-|++..++|++-.- +++.||.|.+-...+
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v-------~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV-------TVVGVTLSEEQLAYA 111 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCC-------EEEEeeCCHHHHHHH
Confidence 3799997 578888888888877522 699999999865533
No 82
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=38.09 E-value=27 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCCEEEE----CcChhHHHHHHHHHHH
Q psy481 10 RIAAYQAVDDNVLNNTAVGI----GSGSTVVYAVDRLAER 45 (166)
Q Consensus 10 ~~IA~~A~~~~I~dg~vI~l----dsGsT~~~la~~L~~~ 45 (166)
+++|+.-++ .+++|++|.| |+|-|+. ++.|.+.
T Consensus 2 ~~la~~l~~-~l~~g~vi~L~GdLGaGKTtf--~r~l~~~ 38 (123)
T PF02367_consen 2 IRLAKKLAQ-ILKPGDVILLSGDLGAGKTTF--VRGLARA 38 (123)
T ss_dssp HHHHHHHHH-HHSS-EEEEEEESTTSSHHHH--HHHHHHH
T ss_pred HHHHHHHHH-hCCCCCEEEEECCCCCCHHHH--HHHHHHH
Confidence 457888887 7999999996 8999984 4666654
No 83
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=37.99 E-value=32 Score=27.98 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.0
Q ss_pred CEEEECcChhHHHHHHHHHHH
Q psy481 25 TAVGIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~~ 45 (166)
|+|.||||+.-..+|.+|.+.
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~ 22 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEA 22 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTS
T ss_pred CEEEECcCHHHHHHHHHHhhC
Confidence 789999999999999999753
No 84
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=37.78 E-value=1.1e+02 Score=28.33 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=41.0
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
++.+|.+|.|..-..+++.|.++ +.++++|-++.+....+++.|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~----g~~vvvID~d~~~v~~~~~~g~~v~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN----KMRITVLERDISAVNLMRKYGYKVYY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhCCCeEEE
Confidence 46899999999999999999753 23799999999988888888877654
No 85
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=37.71 E-value=2.1e+02 Score=22.87 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCE---EEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH----HhCCC---eeee
Q psy481 6 EEAKRIAAYQAVDDNVLNNTA---VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI----LKNNM---VLGD 75 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~v---I~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l----~~~~i---~v~~ 75 (166)
.+|=+++.-.+++ .++||. ||-||||-+.+++ .+... ..++.|=-+-..+... .+.|+ .++.
T Consensus 19 K~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a-~~~p~-----~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~ 90 (187)
T COG2242 19 KEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWA-LAGPS-----GRVIAIERDEEALELIERNAARFGVDNLEVVE 90 (187)
T ss_pred HHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHH-HhCCC-----ceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3455566666665 788884 6778888888888 33332 1355555544443332 22333 2321
Q ss_pred ------CCCCCcccEEEEccc
Q psy481 76 ------LETHPDLSCVIDGAD 90 (166)
Q Consensus 76 ------l~~~~~~D~af~gad 90 (166)
|....++|.+|+|..
T Consensus 91 g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 91 GDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred ccchHhhcCCCCCCEEEECCC
Confidence 233347999999988
No 86
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=37.38 E-value=1e+02 Score=27.20 Aligned_cols=52 Identities=27% Similarity=0.337 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHH
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQA 62 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~i 62 (166)
..++-+++++.+-+ .+.+-+|++|+|++. =.|+++..++ ++.+.+|+++..+
T Consensus 69 ~~~ev~~~~~~~~~--~~~d~vIGVGGGk~i-D~aK~~A~~~---~~pfIsvPT~AS~ 120 (360)
T COG0371 69 SEEEVERLAAEAGE--DGADVVIGVGGGKTI-DTAKAAAYRL---GLPFISVPTIAST 120 (360)
T ss_pred CHHHHHHHHHHhcc--cCCCEEEEecCcHHH-HHHHHHHHHc---CCCEEEecCcccc
Confidence 34566677775553 455679999999986 4577777652 3578888887655
No 87
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.32 E-value=70 Score=27.03 Aligned_cols=57 Identities=23% Similarity=0.228 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhh-cCCCeEEEcChHH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKA-EKLKIVCVPTSFQ 61 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~-~~~~ltvVTnS~~ 61 (166)
+..+||+++.+.+.+ .+...=-|..|.|++...=+-+|.++-++ +-..+.++|+...
T Consensus 54 Ls~eEr~~v~~~~v~-~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~ 111 (299)
T COG0329 54 LTLEERKEVLEAVVE-AVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYN 111 (299)
T ss_pred cCHHHHHHHHHHHHH-HHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 456889999999998 56544448888888866655555543222 2356888887654
No 88
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=37.05 E-value=57 Score=26.48 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=28.6
Q ss_pred ECcChhHHH--HHHHHHHHHhhcCCCeEEEcChHHH---HHHHHh-CCCeeee
Q psy481 29 IGSGSTVVY--AVDRLAERIKAEKLKIVCVPTSFQA---RQLILK-NNMVLGD 75 (166)
Q Consensus 29 ldsGsT~~~--la~~L~~~~~~~~~~ltvVTnS~~i---a~~l~~-~~i~v~~ 75 (166)
.|||-|++. +++.|+++ .++-||||++.+ |..+.+ .+.+++-
T Consensus 22 ~GSGKTaLie~~~~~L~~~-----~~~aVI~~Di~t~~Da~~l~~~~g~~i~~ 69 (202)
T COG0378 22 PGSGKTALIEKTLRALKDE-----YKIAVITGDIYTKEDADRLRKLPGEPIIG 69 (202)
T ss_pred CCcCHHHHHHHHHHHHHhh-----CCeEEEeceeechhhHHHHHhCCCCeeEE
Confidence 367888643 34555443 479999999988 456667 7877654
No 89
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=36.52 E-value=34 Score=26.38 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=18.6
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~ 45 (166)
++...+|. +|||.|..+++++|.++
T Consensus 93 v~gr~VLIVDDIidTG~Tl~~~~~~L~~~ 121 (176)
T PRK05205 93 IEGKRVILVDDVLYTGRTIRAALDALFDY 121 (176)
T ss_pred CCCCEEEEEecccCcHHHHHHHHHHHHhc
Confidence 44444554 47999999999999865
No 90
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=36.36 E-value=52 Score=26.17 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=29.8
Q ss_pred CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeC
Q psy481 30 GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL 76 (166)
Q Consensus 30 dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l 76 (166)
|||+|| +++.|.+++ ++.+|....--...+++.|+.+...
T Consensus 10 GsG~TT--va~~lAe~~-----gl~~vsaG~iFR~~A~e~gmsl~ef 49 (179)
T COG1102 10 GSGKTT--VARELAEHL-----GLKLVSAGTIFREMARERGMSLEEF 49 (179)
T ss_pred CCChhH--HHHHHHHHh-----CCceeeccHHHHHHHHHcCCCHHHH
Confidence 788888 458888763 7888887777766778899876544
No 91
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=36.05 E-value=93 Score=27.94 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=37.9
Q ss_pred CcccEEEEccc-cccCCCcccc-CCcchHHHHHHHHhhCCceEEEEcCCCcccccCC
Q psy481 80 PDLSCVIDGAD-EVDENLVLIK-GGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGD 134 (166)
Q Consensus 80 ~~~D~af~gad-~vd~~~~~~~-~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~ 134 (166)
...|+.+.||+ +|.+.|.++. .+.+. .+++..--+..|+++.-+|+..++..
T Consensus 180 ~~advgit~an~aiAetGtlv~~~~~gn---~R~~~~lP~~hI~vvg~~kivp~~~~ 233 (432)
T TIGR00273 180 LSADIGISGCNFAIAETGSIFLVENEGN---GRLSTTLPKTHIAVMGIEKIVPTFDD 233 (432)
T ss_pred hcCCEEEeccchHhhcCceEEEecCCCC---chhhccCCCeEEEEEEHHHccCCHHH
Confidence 47999999999 8887776633 22221 13444567899999999999998753
No 92
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=35.32 E-value=1.3e+02 Score=27.58 Aligned_cols=62 Identities=15% Similarity=0.003 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCCC-CEEEECcChh------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 10 RIAAYQAVDDNVLNN-TAVGIGSGST------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 10 ~~IA~~A~~~~I~dg-~vI~ldsGsT------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
..|.++|.+ ++++| |+|=||.+|| +..+++.|.+. ....+.|=|.+..++..+.+.|..++.
T Consensus 165 ~~i~~~A~~-~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~---~~~pISIDT~~~~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 165 DGIEGLAAR-MERDGADMVALGTGSFDDDPDVVKEKVKTALDA---LDSPVIADTPTLDELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHH-HHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhh---CCCcEEEeCCCHHHHHHHHHcCCCEEE
Confidence 356777888 88887 7999999998 55566666542 123577778888888877777866543
No 93
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.66 E-value=85 Score=26.55 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
.+..+|++++.+.+++ .+...-.|+.|.|+ ++...++..+..-..+-..+.++++.
T Consensus 57 ~Lt~eEr~~v~~~~~~-~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 57 TLTWEEKQAFVATVVE-TVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred hCCHHHHHHHHHHHHH-HhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 3567899999999999 78765677888886 33344443332211122346666553
No 94
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=34.54 E-value=1.2e+02 Score=27.32 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHHHHHh-----cCCCCCCEEEECcChhHHHHHHHHHHHHhhcC----CCeEEEcChHHHHHH---------------
Q psy481 10 RIAAYQAVD-----DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK----LKIVCVPTSFQARQL--------------- 65 (166)
Q Consensus 10 ~~IA~~A~~-----~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~----~~ltvVTnS~~ia~~--------------- 65 (166)
..||+.|++ -|+++|=..-=|+|-..+.+.+.|.+++.+++ +.+=-||+.+---++
T Consensus 255 LlIA~~aa~VI~~SgYFkdGFs~QTGtGGAsLaVtrfl~ekM~~~nI~AsfaLGGIT~~mVdLhE~gLi~kllDvQsFD~ 334 (513)
T COG3051 255 LLIARSAADVIVNSGYFKDGFSMQTGTGGASLAVTRFLEEKMRRRNIKASFALGGITATMVDLHEEGLIDKLLDVQSFDS 334 (513)
T ss_pred HHHHHHHhhhhhcCCcccCceeeecCCCchhHHHHHHHHHHHHhhccceeeecccchHHHHHHHHHHHHHHHhcccccCc
Confidence 568998886 13478989999999999999999987654432 233456666543211
Q ss_pred -----HH-hCC-CeeeeC---------CCCCcccEEEEccccccCCCcc
Q psy481 66 -----IL-KNN-MVLGDL---------ETHPDLSCVIDGADEVDENLVL 98 (166)
Q Consensus 66 -----l~-~~~-i~v~~l---------~~~~~~D~af~gad~vd~~~~~ 98 (166)
|+ +++ +++..- ....+.|+++++|=+||.+++.
T Consensus 335 ~aa~Sla~np~h~EIsAn~YAnp~skGa~vdrLdvviLSALEiDt~FNV 383 (513)
T COG3051 335 DAAQSLARNPNHIEISANQYANPGSKGASVDRLDVVILSALEIDTQFNV 383 (513)
T ss_pred HHHHHHhcCCccEEechhhhcCCCCCCceeceeeEEEEEeeeeccccce
Confidence 11 111 111100 0124899999999999988755
No 95
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=34.52 E-value=93 Score=25.91 Aligned_cols=57 Identities=19% Similarity=0.174 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
.+..+||+++.+.+++ .+...-.|..|.|.++...++..+...+.+-..+.++++..
T Consensus 49 ~Ls~eEr~~l~~~~~~-~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~y 105 (289)
T cd00951 49 SLTPDEYAQVVRAAVE-ETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPYL 105 (289)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 3557899999999998 78655556666665556655555432111223566666544
No 96
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=33.90 E-value=2.3e+02 Score=22.76 Aligned_cols=72 Identities=11% Similarity=-0.001 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhh--------------------cCCCeEEEcChHH---
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKA--------------------EKLKIVCVPTSFQ--- 61 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~--------------------~~~~ltvVTnS~~--- 61 (166)
+..++.+.|...+. .+.+|+++|+|+-.-....++....+... ..+++.+|++-..
T Consensus 44 kT~~~L~~A~~~i~-~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~ 122 (196)
T TIGR01012 44 KTDERLRVAAKFLV-RIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQ 122 (196)
T ss_pred HHHHHHHHHHHHHH-HhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccccH
Confidence 44566677777777 46699999999998776666655543210 1245777776544
Q ss_pred HHHHHHhCCCeeeeCC
Q psy481 62 ARQLILKNNMVLGDLE 77 (166)
Q Consensus 62 ia~~l~~~~i~v~~l~ 77 (166)
...++...|++++.+-
T Consensus 123 Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 123 ALKEASEVGIPIVALC 138 (196)
T ss_pred HHHHHHHcCCCEEEEe
Confidence 2337778999888763
No 97
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=33.90 E-value=83 Score=24.26 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEE----CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCC
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGI----GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHP 80 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~l----dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~ 80 (166)
..++..++|+.-++ .++.|++|.| |+|-|+. ++.|..-+. -+-.|.++++.+...-...+.++ +
T Consensus 7 ~~~~t~~lg~~l~~-~l~~g~Vv~L~GdLGAGKTtf--~rgi~~~Lg---~~~~V~SPTFtlv~~Y~~~~~~l------y 74 (149)
T COG0802 7 DEEATLALGERLAE-ALKAGDVVLLSGDLGAGKTTL--VRGIAKGLG---VDGNVKSPTFTLVEEYEEGRLPL------Y 74 (149)
T ss_pred CHHHHHHHHHHHHh-hCCCCCEEEEEcCCcCChHHH--HHHHHHHcC---CCCcccCCCeeeehhhcCCCCcE------E
Confidence 34567788888888 7999999995 8999984 466654321 12335566666544322233333 3
Q ss_pred cccEEEEc
Q psy481 81 DLSCVIDG 88 (166)
Q Consensus 81 ~~D~af~g 88 (166)
++|+|=++
T Consensus 75 H~DlYRl~ 82 (149)
T COG0802 75 HFDLYRLS 82 (149)
T ss_pred EEeeeccC
Confidence 56666555
No 98
>PRK11524 putative methyltransferase; Provisional
Probab=32.97 E-value=53 Score=27.27 Aligned_cols=32 Identities=13% Similarity=-0.113 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCCCCEE---EECcChhHHHHHHHHH
Q psy481 11 IAAYQAVDDNVLNNTAV---GIGSGSTVVYAVDRLA 43 (166)
Q Consensus 11 ~IA~~A~~~~I~dg~vI---~ldsGsT~~~la~~L~ 43 (166)
.+.+..+..+=++||+| |.|||||..+ |+.|.
T Consensus 196 ~L~erlI~~~S~~GD~VLDPF~GSGTT~~A-A~~lg 230 (284)
T PRK11524 196 ALLKRIILASSNPGDIVLDPFAGSFTTGAV-AKASG 230 (284)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHHHH-HHHcC
Confidence 34455554234799998 6999999865 44444
No 99
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=32.04 E-value=2.4e+02 Score=23.89 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=41.0
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh------------HHHHHHHHhCCCeeeeCCCC-----------Ccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS------------FQARQLILKNNMVLGDLETH-----------PDL 82 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS------------~~ia~~l~~~~i~v~~l~~~-----------~~~ 82 (166)
++|+|++......++.|.+. +-.-+.|+|+. ..+...+.++|+++...... .++
T Consensus 3 Ivf~Gs~~~a~~~L~~L~~~---~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~l~~~~~ 79 (313)
T TIGR00460 3 IVFFGTPTFSLPVLEELRED---NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPLVRELKP 79 (313)
T ss_pred EEEECCCHHHHHHHHHHHhC---CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHHHHhhCC
Confidence 78999999998888888653 11235688864 23666778889987654221 267
Q ss_pred cEEEEcc
Q psy481 83 SCVIDGA 89 (166)
Q Consensus 83 D~af~ga 89 (166)
|+.|.-+
T Consensus 80 Dliv~~~ 86 (313)
T TIGR00460 80 DVIVVVS 86 (313)
T ss_pred CEEEEcc
Confidence 8777543
No 100
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=31.89 E-value=40 Score=26.26 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=18.1
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~ 45 (166)
++.-.++. ++||+|..+.++.|.+.
T Consensus 95 v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~ 123 (181)
T PRK09162 95 LKGRTVLVVDDILDEGHTLAAIRDRCLEM 123 (181)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhC
Confidence 44344554 46999999999999864
No 101
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.51 E-value=1.6e+02 Score=23.50 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH----HHHhCCC-eee
Q psy481 13 AYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ----LILKNNM-VLG 74 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~----~l~~~~i-~v~ 74 (166)
|-++.. -+.+=|.||||.|-+...+.+.+.++++.+. .+++=...++++. .+++.|. +++
T Consensus 93 Ap~~L~-~~~~~daiFIGGg~~i~~ile~~~~~l~~gg-rlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 93 APEALP-DLPSPDAIFIGGGGNIEEILEAAWERLKPGG-RLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred chHhhc-CCCCCCEEEECCCCCHHHHHHHHHHHcCcCC-eEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 334444 2446799999999999999999988764322 2322223333333 3456776 443
No 102
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=31.22 E-value=1.3e+02 Score=22.09 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcC-CCeEEEcChHHHHH
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK-LKIVCVPTSFQARQ 64 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~-~~ltvVTnS~~ia~ 64 (166)
|-+.++..+.+.-|.+..++.-+.+++|.+=+.++.+.++..+ .++.+||+......
T Consensus 55 ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~iilVT~~~H~~R 112 (155)
T PF02698_consen 55 EAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSIILVTSPYHMRR 112 (155)
T ss_dssp HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EEEE--CCCHHH
T ss_pred HHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEEEECCHHHHHH
Confidence 3344555565534777788888888888777776665544322 37888888877755
No 103
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=31.07 E-value=1.8e+02 Score=22.02 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=24.8
Q ss_pred CeEEEcChHHHHHHHHhCCCeeeeCCCC
Q psy481 52 KIVCVPTSFQARQLILKNNMVLGDLETH 79 (166)
Q Consensus 52 ~ltvVTnS~~ia~~l~~~~i~v~~l~~~ 79 (166)
+..|.||+-+....+.+.|++++.+.+.
T Consensus 99 ~~iVaTnD~eLk~rlr~~GIPvi~lr~r 126 (136)
T COG1412 99 RYIVATNDKELKRRLRENGIPVITLRQR 126 (136)
T ss_pred CEEEEeCCHHHHHHHHHcCCCEEEEeCC
Confidence 4889999999999998889999998754
No 104
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=31.04 E-value=1.7e+02 Score=19.69 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=14.7
Q ss_pred HHHhhCCceEEEEcCCCcc
Q psy481 111 IVASCTPKLVIIADHTKQS 129 (166)
Q Consensus 111 ~i~~~A~~~illaD~sKf~ 129 (166)
.+++.|+.+++.++.+...
T Consensus 57 ~~l~~ad~viv~~~~~~~s 75 (104)
T cd02042 57 NALAAADLVLIPVQPSPLD 75 (104)
T ss_pred HHHHHCCEEEEeccCCHHH
Confidence 4557889999999888753
No 105
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=30.67 E-value=1.5e+02 Score=24.13 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhh-cCCCeEEEcC
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKA-EKLKIVCVPT 58 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~-~~~~ltvVTn 58 (166)
+..+|++++.+.+++ .+.+...|+.|.|+....-+-.+.++.+. +-..+.++++
T Consensus 47 ls~~Er~~l~~~~~~-~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 47 LTDEERKEVIEAVVE-AVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 457899999999999 78766777788776444322233222111 2234666664
No 106
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=30.66 E-value=2.2e+02 Score=23.48 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCCC-CEEEECcChh---------------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 11 IAAYQAVDDNVLNN-TAVGIGSGST---------------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 11 ~IA~~A~~~~I~dg-~vI~ldsGsT---------------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.+.++|.+ ++++| |+|=||.-|| +..+++.|.+.. ...+.+=|.+.+++..+-+.|..++
T Consensus 25 ~~~~~a~~-~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~---~~plSIDT~~~~v~e~al~~G~~iI 100 (257)
T cd00739 25 KAVAHAEK-MIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL---DVLISVDTFRAEVARAALEAGADII 100 (257)
T ss_pred HHHHHHHH-HHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CCcEEEeCCCHHHHHHHHHhCCCEE
Confidence 44556777 78888 6888987666 555556665421 2357777888888887777786654
Q ss_pred e
Q psy481 75 D 75 (166)
Q Consensus 75 ~ 75 (166)
.
T Consensus 101 N 101 (257)
T cd00739 101 N 101 (257)
T ss_pred E
Confidence 3
No 107
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=30.25 E-value=2.1e+02 Score=23.60 Aligned_cols=65 Identities=11% Similarity=0.096 Sum_probs=41.7
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCC-C-CCcccEEEEccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLE-T-HPDLSCVIDGAD 90 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~-~-~~~~D~af~gad 90 (166)
+-|||.|..-..++..|.+.-.....++++...+...+..+. +.|+....-. + ....|+.|+++-
T Consensus 5 IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk 72 (272)
T PRK12491 5 IGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK 72 (272)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC
Confidence 678999999999999997530000125878777777766664 4676543211 1 125688887654
No 108
>PF02589 DUF162: Uncharacterised ACR, YkgG family COG1556; InterPro: IPR003741 This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterised proteins. Lactate utilization proteins B and C are involved in L-lactate degradation and allows cells to grow with lactate as the sole carbon source. LutB probably has a role as an electron transporter during oxidation of L-lactate.; PDB: 2G40_A.
Probab=30.18 E-value=23 Score=27.36 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=35.0
Q ss_pred cccEEEEccc-cccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccC
Q psy481 81 DLSCVIDGAD-EVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLG 133 (166)
Q Consensus 81 ~~D~af~gad-~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~ 133 (166)
..|..|.+|+ +|.++|.+.-..+... . +++.--.+.+|+++..+|++.+|.
T Consensus 84 ~ad~gIt~a~~aIAetGtlvl~~~~~~-~-r~~s~lP~~hi~vv~~~kIv~~l~ 135 (189)
T PF02589_consen 84 DADVGITGANYAIAETGTLVLSSGPGN-R-RAVSLLPPVHIVVVGASKIVPNLE 135 (189)
T ss_dssp H-SEEEE--SEEETTTTEEEE---TTT---GGGGTSSSEEEEEEEGGGEESSHH
T ss_pred cCCEEEECccHHHHhCCeEEEeCCCCC-h-hhhhhCCCeEEEEEcHHHcCCCHH
Confidence 6999999999 8888887743222211 1 466668899999999999999874
No 109
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=29.75 E-value=1.3e+02 Score=25.20 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
....+||+++.+.+++ .+...-.|..|.|.++...++..+..-+.+-..+.++++.
T Consensus 56 ~Lt~eEr~~~~~~~~~-~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 56 SLTPDEYSQVVRAAVE-TTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 3457899999999998 6765555555666666666666553211122346666654
No 110
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=29.73 E-value=46 Score=18.21 Aligned_cols=14 Identities=36% Similarity=0.211 Sum_probs=11.1
Q ss_pred CcChhHHHHHHHHH
Q psy481 30 GSGSTVVYAVDRLA 43 (166)
Q Consensus 30 dsGsT~~~la~~L~ 43 (166)
|||||...+.-.|.
T Consensus 3 DsGST~~Ll~~~l~ 16 (26)
T TIGR03778 3 DSGSTLALLGLGLL 16 (26)
T ss_pred CchhHHHHHHHHHH
Confidence 79999988776654
No 111
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=29.66 E-value=54 Score=21.08 Aligned_cols=34 Identities=15% Similarity=0.185 Sum_probs=23.2
Q ss_pred EEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH
Q psy481 27 VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL 67 (166)
Q Consensus 27 I~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~ 67 (166)
||.|+|.++..+++. .. .+++.+-.|......+.
T Consensus 3 iG~G~G~~~~~l~~~-~~------~~v~~~D~~~~~~~~~~ 36 (95)
T PF08241_consen 3 IGCGTGRFAAALAKR-GG------ASVTGIDISEEMLEQAR 36 (95)
T ss_dssp ET-TTSHHHHHHHHT-TT------CEEEEEES-HHHHHHHH
T ss_pred ecCcCCHHHHHHHhc-cC------CEEEEEeCCHHHHHHHH
Confidence 567888888777766 22 37999999998766554
No 112
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=29.46 E-value=86 Score=24.93 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=20.0
Q ss_pred CCCCCEEEEC----cChhHHHHHHHHHHH
Q psy481 21 VLNNTAVGIG----SGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~ld----sGsT~~~la~~L~~~ 45 (166)
+++..+|.+| ||.|+...++.|.++
T Consensus 122 i~~~~VllvDd~laTG~Tl~~ai~~L~~~ 150 (209)
T PRK00129 122 IDERTVIVVDPMLATGGSAIAAIDLLKKR 150 (209)
T ss_pred CCCCEEEEECCcccchHHHHHHHHHHHHc
Confidence 5555677655 999999999999875
No 113
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=29.38 E-value=2.2e+02 Score=24.04 Aligned_cols=60 Identities=20% Similarity=0.108 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCCC-CEEEECcChh---------------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 11 IAAYQAVDDNVLNN-TAVGIGSGST---------------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 11 ~IA~~A~~~~I~dg-~vI~ldsGsT---------------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.+.++|.+ ++++| |+|=||.-|| +.-+++.|.+. ....+-|=|...+++..+-+.|..++
T Consensus 39 ~a~~~a~~-~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~---~~~~ISIDT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 39 DAVKHANL-MINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQR---FEVWISVDTSKPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHH-HHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCCeEEEECCCHHHHHHHHHcCCCEE
Confidence 34556787 89887 6889995444 34444555432 12247777888899988877787665
No 114
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=29.28 E-value=1e+02 Score=21.41 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=31.9
Q ss_pred cChhHHHHHHHHHHHHhhcCCC-eEEEcChHHHHHHHH-hCCCeeeeCCC
Q psy481 31 SGSTVVYAVDRLAERIKAEKLK-IVCVPTSFQARQLIL-KNNMVLGDLET 78 (166)
Q Consensus 31 sGsT~~~la~~L~~~~~~~~~~-ltvVTnS~~ia~~l~-~~~i~v~~l~~ 78 (166)
.+++-.++.+...+. + ..|.||+-+....|. .+|++++.+..
T Consensus 50 ~~~addci~~~~~~~------~~~~VaT~D~~Lr~~lr~~~GvPvi~l~~ 93 (101)
T PF04900_consen 50 PGSADDCILDLAGKN------NKYIVATQDKELRRRLRKIPGVPVIYLRR 93 (101)
T ss_pred CcCHHHHHHHHhccC------CeEEEEecCHHHHHHHhcCCCCCEEEEEC
Confidence 466666666665432 4 889999999999887 89999987753
No 115
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=29.17 E-value=1.7e+02 Score=24.03 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCCCCCEEEEC---------cChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIG---------SGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ld---------sGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
+||++|- |-. ++.+-..|.-| ++..+..+.+.+.+. ...-+.+||++..+|..+
T Consensus 147 qqQRVAI-ARA-L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~---~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 147 QQQRVAI-ARA-LINNPKIILADEPTGNLDSKTAKEVLELLRELNKE---RGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHH-HHH-HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHhC
Confidence 4555443 223 45666777765 344444444554432 234699999999998754
No 116
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=28.87 E-value=57 Score=25.05 Aligned_cols=17 Identities=35% Similarity=0.612 Sum_probs=14.1
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||.|+...++.|.+.
T Consensus 94 i~TG~Tl~~~~~~l~~~ 110 (166)
T TIGR01203 94 VDTGLTLQYLLDLLKAR 110 (166)
T ss_pred eCcHHHHHHHHHHHHHC
Confidence 47999999999998754
No 117
>PRK14694 putative mercuric reductase; Provisional
Probab=28.75 E-value=2.1e+02 Score=25.32 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=34.9
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh-------HHHHH----HHHhCCCeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS-------FQARQ----LILKNNMVLG 74 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS-------~~ia~----~l~~~~i~v~ 74 (166)
+..++.||+|-+-.++|..|.+. ..++++++++ .+++. .+.+.|+++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~----g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~~~GI~v~ 236 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARL----GSRVTVLARSRVLSQEDPAVGEAIEAAFRREGIEVL 236 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEECCCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999864 2379999874 22322 3456777653
No 118
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=28.72 E-value=68 Score=24.24 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=26.4
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+++..++-||+|.+...++..|.+. + ..+++++-+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~---g-~~V~~~~R~ 199 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKA---G-KSVTLVTRS 199 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTT---C-SEEEEEESS
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhh---C-CEEEEEecC
Confidence 5677899999999999999999764 2 468888765
No 119
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=28.69 E-value=1.7e+02 Score=19.33 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=41.7
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEE-cChHHHHHHH-HhCCCeeeeC--C-CCCcccEEEEccccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCV-PTSFQARQLI-LKNNMVLGDL--E-THPDLSCVIDGADEV 92 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvV-TnS~~ia~~l-~~~~i~v~~l--~-~~~~~D~af~gad~v 92 (166)
+-+||+|..-..+++.|.+.- ....+++++ ..+.+-+..+ .+.+..+... . -....|+.|+++.--
T Consensus 2 I~iIG~G~mg~al~~~l~~~g-~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~ 72 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASG-IKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ 72 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTT-S-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG
T ss_pred EEEECCCHHHHHHHHHHHHCC-CCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH
Confidence 357899999999999997640 001267756 7777766665 5677655432 1 123588999877653
No 120
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.56 E-value=1.8e+02 Score=23.88 Aligned_cols=56 Identities=21% Similarity=0.185 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
....+|++++.+.+++ ...+.-.|..|.|++ +...++....-...+-..+.++++.
T Consensus 49 ~lt~~Er~~l~~~~~~-~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 49 TLSDEEHEAVIEAVVE-AVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred hCCHHHHHHHHHHHHH-HhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 3567899999999998 787666788888864 4344333332211122345555543
No 121
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=28.42 E-value=1.4e+02 Score=20.66 Aligned_cols=36 Identities=6% Similarity=0.060 Sum_probs=25.5
Q ss_pred EEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHH
Q psy481 27 VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQA 62 (166)
Q Consensus 27 I~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~i 62 (166)
+..|+|-++..+++.+.+.++..+.++.+...|..-
T Consensus 4 ~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~ 39 (96)
T cd05564 4 LVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE 39 (96)
T ss_pred EEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHH
Confidence 567899899899998887654444456666666554
No 122
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=28.10 E-value=3.2e+02 Score=21.97 Aligned_cols=96 Identities=7% Similarity=0.088 Sum_probs=57.8
Q ss_pred HhcCCCCCC-EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCC------CC--CcccEEEE
Q psy481 17 VDDNVLNNT-AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLE------TH--PDLSCVID 87 (166)
Q Consensus 17 ~~~~I~dg~-vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~------~~--~~~D~af~ 87 (166)
++ .|++|. |.=||.|.-. +..+|.+. +.-....|=.+.+....+.+.|++++..+ .+ .+||.+++
T Consensus 8 ~~-~I~pgsrVLDLGCGdG~--LL~~L~~~---k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl 81 (193)
T PF07021_consen 8 AE-WIEPGSRVLDLGCGDGE--LLAYLKDE---KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL 81 (193)
T ss_pred HH-HcCCCCEEEecCCCchH--HHHHHHHh---cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence 45 799997 5556666444 44777653 11135567777777778889999987642 11 26888777
Q ss_pred ccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 88 GADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 88 gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
+- .+. .+. ....+.+.++ +.+++.|+-...-
T Consensus 82 sq-tLQ----~~~--~P~~vL~Eml-RVgr~~IVsFPNF 112 (193)
T PF07021_consen 82 SQ-TLQ----AVR--RPDEVLEEML-RVGRRAIVSFPNF 112 (193)
T ss_pred Hh-HHH----hHh--HHHHHHHHHH-HhcCeEEEEecCh
Confidence 42 221 111 1223344454 7889988877654
No 123
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=27.92 E-value=56 Score=27.08 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=18.4
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~ 45 (166)
++...++. +|||.|+.++++.|.+.
T Consensus 148 l~gk~VLIVDDIidTG~Tl~~~~~~L~~~ 176 (241)
T PTZ00149 148 LKDKHVLIVEDIIDTGNTLVKFCEYLKKF 176 (241)
T ss_pred cCCCEEEEEEeEeChHHHHHHHHHHHHhc
Confidence 44445554 57999999999999764
No 124
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=27.59 E-value=2.3e+02 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=35.5
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH------------HHHHHHhCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ------------ARQLILKNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~------------ia~~l~~~~i~v~ 74 (166)
.++.++.+|+|-+-.++|..|.+. ...+++++.+-. +...|.+.|+++.
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~ 207 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYER----GLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYR 207 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEE
Confidence 457899999999999999999753 236999986532 2234566777654
No 125
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=27.48 E-value=62 Score=25.30 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=18.7
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~ 45 (166)
++..+++. +|||.|...+.++|..+
T Consensus 90 v~gk~VLlVDDIiDTG~TL~~l~~~l~~~ 118 (178)
T PRK15423 90 IRGKDVLIVEDIIDSGNTLSKVREILSLR 118 (178)
T ss_pred CCCCEEEEEeeecCchHHHHHHHHHHHhC
Confidence 45555654 58999999999998764
No 126
>PRK06988 putative formyltransferase; Provisional
Probab=27.38 E-value=2.8e+02 Score=23.46 Aligned_cols=61 Identities=10% Similarity=-0.045 Sum_probs=40.6
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh---------HHHHHHHHhCCCeeeeCCC-----------CCcccEE
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS---------FQARQLILKNNMVLGDLET-----------HPDLSCV 85 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS---------~~ia~~l~~~~i~v~~l~~-----------~~~~D~a 85 (166)
++|+|++.-....++.|.+. +..-+.|+|+- ..+...+.++|+++..... ..++|+.
T Consensus 5 Ivf~Gs~~~a~~~L~~L~~~---~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~~~~Dli 81 (312)
T PRK06988 5 AVVFAYHNVGVRCLQVLLAR---GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAAAAPDFI 81 (312)
T ss_pred EEEEeCcHHHHHHHHHHHhC---CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHhcCCCEE
Confidence 89999999888888888653 11225577762 2456677888998765321 1368887
Q ss_pred EEcc
Q psy481 86 IDGA 89 (166)
Q Consensus 86 f~ga 89 (166)
|.-+
T Consensus 82 v~~~ 85 (312)
T PRK06988 82 FSFY 85 (312)
T ss_pred EEeh
Confidence 7654
No 127
>PRK13699 putative methylase; Provisional
Probab=27.29 E-value=80 Score=25.54 Aligned_cols=28 Identities=32% Similarity=0.284 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCCCCEE---EECcChhHHHHH
Q psy481 12 AAYQAVDDNVLNNTAV---GIGSGSTVVYAV 39 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI---~ldsGsT~~~la 39 (166)
+.+..++.+-++||+| |.|||||..+..
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~ 182 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAAL 182 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHH
Confidence 4444444256789988 689999986643
No 128
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=27.21 E-value=3.4e+02 Score=21.97 Aligned_cols=65 Identities=15% Similarity=0.126 Sum_probs=37.4
Q ss_pred CCCCCEEEE-CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeC-CC---CCcccEEEEcc
Q psy481 21 VLNNTAVGI-GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL-ET---HPDLSCVIDGA 89 (166)
Q Consensus 21 I~dg~vI~l-dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l-~~---~~~~D~af~ga 89 (166)
+++|++|.| |+|+.-..+++.++.+ ...+++++.+.+-...+.+.|...... .. ...+|.+|+..
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~----G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~ 222 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALT----GPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEAT 222 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc----CCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECC
Confidence 677887776 6665444444444433 234777777766666666677543221 11 12488888854
No 129
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=26.90 E-value=67 Score=24.99 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=22.8
Q ss_pred CCCCCEEEEC----cChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 21 VLNNTAVGIG----SGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 21 I~dg~vI~ld----sGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
++...++.|| ||+|+.+.++.|.+. +...+.++|
T Consensus 150 ~~~~~vllvDDV~TTGaTl~~~~~~L~~~---Ga~~V~~~~ 187 (190)
T TIGR00201 150 FQGRNIVLVDDVVTTGATLHEIARLLLEL---GAASVQVWT 187 (190)
T ss_pred CCCCEEEEEeeeeccHHHHHHHHHHHHHc---CCCEEEEEE
Confidence 3434577665 999999999999764 323455544
No 130
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=26.87 E-value=1.2e+02 Score=26.14 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=38.3
Q ss_pred CCEEEECcChhHHHHHHHHHHH-----Hhh-cCCCeEEEcChHHHHHHHHhCCCee
Q psy481 24 NTAVGIGSGSTVVYAVDRLAER-----IKA-EKLKIVCVPTSFQARQLILKNNMVL 73 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~-----~~~-~~~~ltvVTnS~~ia~~l~~~~i~v 73 (166)
-|.|.+-|++|+..|.+.+.+. +.. ...+++++.=+..++..|.+.|+++
T Consensus 202 ~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~G~~~ 257 (381)
T PRK07239 202 LDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRAGVPT 257 (381)
T ss_pred ccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHcCCCc
Confidence 4899999999999999988631 000 0125778889999999999988765
No 131
>PRK11595 DNA utilization protein GntX; Provisional
Probab=26.86 E-value=66 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=18.7
Q ss_pred CCCCCEEEE----CcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVGI----GSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~l----dsGsT~~~la~~L~~~ 45 (166)
+++..++.| +||+|+...++.|.+.
T Consensus 185 ~~~~~vllvDDv~tTG~Tl~~~~~~L~~~ 213 (227)
T PRK11595 185 VQGQHMAIVDDVVTTGSTVAEIAQLLLRN 213 (227)
T ss_pred CCCCEEEEEeeeecchHHHHHHHHHHHHc
Confidence 444456654 6999999999999864
No 132
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=26.61 E-value=64 Score=26.11 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=19.8
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~ 45 (166)
+++.+++. +|||.|..++.++|.++
T Consensus 116 i~gk~VLIVDDIvDTG~TL~~v~~~l~~~ 144 (211)
T PTZ00271 116 VENRHILIVEDIVDSAITLQYLMRFMLAK 144 (211)
T ss_pred CCCCEEEEEecccCCHHHHHHHHHHHHhc
Confidence 55566665 58999999999999865
No 133
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=26.40 E-value=1.4e+02 Score=20.78 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcChH-----HHHHHHHhCCCee
Q psy481 36 VYAVDRLAERIKAEKLKIVCVPTSF-----QARQLILKNNMVL 73 (166)
Q Consensus 36 ~~la~~L~~~~~~~~~~ltvVTnS~-----~ia~~l~~~~i~v 73 (166)
..++++|.++ .+.+.++||+- ..+..|...|+++
T Consensus 20 ~e~l~~L~~~----g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 20 VEALDALRER----GKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp HHHHHHHHHT----TSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHc----CCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 3444555543 34688888884 4455667777753
No 134
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=26.17 E-value=2.6e+02 Score=20.26 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcC-CCeEEEcChHHHHH
Q psy481 11 IAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK-LKIVCVPTSFQARQ 64 (166)
Q Consensus 11 ~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~-~~ltvVTnS~~ia~ 64 (166)
.+++.+.+..+.+.+++.-..+++|..=+.+..+.+.... ..+++||+......
T Consensus 55 ~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~i~lVTs~~H~~R 109 (150)
T cd06259 55 AMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGIRSVLLVTSAYHMPR 109 (150)
T ss_pred HHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCCCeEEEECCHHHHHH
Confidence 3444455433444555555566665554444443322211 35777777777655
No 135
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=26.05 E-value=3.2e+02 Score=22.97 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=40.8
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChH------------HHHHHHHhCCCeeeeCCC-----------CCcc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF------------QARQLILKNNMVLGDLET-----------HPDL 82 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~------------~ia~~l~~~~i~v~~l~~-----------~~~~ 82 (166)
++|+|++.-....++.|.++ +..-+-|||... .+...+.++|+++..... ..++
T Consensus 3 Ivf~G~~~~a~~~L~~L~~~---~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~l~~~~~ 79 (309)
T PRK00005 3 IVFMGTPEFAVPSLKALLES---GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAELAALNA 79 (309)
T ss_pred EEEECCCHHHHHHHHHHHHC---CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHHHHhcCc
Confidence 78999999989999998753 112355787432 356677889998765321 1368
Q ss_pred cEEEEcc
Q psy481 83 SCVIDGA 89 (166)
Q Consensus 83 D~af~ga 89 (166)
|+.|.-.
T Consensus 80 Dliv~~~ 86 (309)
T PRK00005 80 DVIVVVA 86 (309)
T ss_pred CEEEEeh
Confidence 8777643
No 136
>KOG4777|consensus
Probab=26.03 E-value=79 Score=27.14 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=65.0
Q ss_pred cChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH-HhCC-Ce-eee------------C--CCCCcccEEEEcccccc
Q psy481 31 SGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI-LKNN-MV-LGD------------L--ETHPDLSCVIDGADEVD 93 (166)
Q Consensus 31 sGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l-~~~~-i~-v~~------------l--~~~~~~D~af~gad~vd 93 (166)
+|+--..|+-.|.++ ....+.++--|-..|-.= ...+ .+ ... + ..+...|++|-|.|+=-
T Consensus 13 TGaVGQrFi~lLsdh---P~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIvfsgldad~ 89 (361)
T KOG4777|consen 13 TGAVGQRFISLLSDH---PYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIVFSGLDADI 89 (361)
T ss_pred cchhHHHHHHHhccC---CcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEEEecCCchh
Confidence 567677777777765 223566765555543310 1111 11 011 1 23346889998877621
Q ss_pred CCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccE-EEccCChHHHHHHhcCCCCCC
Q psy481 94 ENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPI-EVSYHTVPPILYRSGSGPDGQ 163 (166)
Q Consensus 94 ~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pv-ev~p~~~~~v~~~~~~~~~~~ 163 (166)
. + -.||..+ ..-++++|.+|=.++-.. .|+-| ||-|..+..+...++.+|.|+
T Consensus 90 -a--------g--eiek~f~---eag~iiVsNaknyRre~~---VPLvvP~VNpehld~ik~~~~~~k~~~ 143 (361)
T KOG4777|consen 90 -A--------G--EIEKLFA---EAGTIIVSNAKNYRREDG---VPLVVPEVNPEHLDGIKVGLDTGKMGK 143 (361)
T ss_pred -h--------h--hhhHHHH---hcCeEEEeCchhcccCCC---CceEecccCHHHhhhheeccccCCCCC
Confidence 1 1 1356665 345677777775566543 34333 677888888888888888876
No 137
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=25.88 E-value=2.2e+02 Score=24.66 Aligned_cols=47 Identities=9% Similarity=0.073 Sum_probs=35.8
Q ss_pred CEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHh-CCCeeee
Q psy481 25 TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILK-NNMVLGD 75 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~-~~i~v~~ 75 (166)
.++.+|.|.....+++.|.+. ...++++..+......+.+ .+++++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~----g~~v~vid~~~~~~~~~~~~~~~~~~~ 49 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE----NNDVTVIDTDEERLRRLQDRLDVRTVV 49 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC----CCcEEEEECCHHHHHHHHhhcCEEEEE
Confidence 378899999999999999753 2368999988887776654 5666554
No 138
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=25.86 E-value=31 Score=30.71 Aligned_cols=19 Identities=42% Similarity=0.421 Sum_probs=15.6
Q ss_pred CCCCCEEEECcChhHHHHH
Q psy481 21 VLNNTAVGIGSGSTVVYAV 39 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la 39 (166)
-+.+.++|||+|||+.-.+
T Consensus 132 ~~~~~~LGID~GSTtTK~V 150 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAV 150 (396)
T ss_pred hcCcEEEEEecCCcceeEE
Confidence 5678899999999997543
No 139
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=25.67 E-value=1.2e+02 Score=24.94 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
++..+||+++.+.+++ .+...--|+.|.|. ++...++........+-..+.++++
T Consensus 50 ~Lt~~Er~~l~~~~~~-~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 50 SLTDEERKELLEIVVE-AAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp GS-HHHHHHHHHHHHH-HHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred cCCHHHHHHHHHHHHH-HccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 4567899999999998 78776678888887 4444444443221112234656654
No 140
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.67 E-value=1.5e+02 Score=24.67 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhh-cCCCeEEEcCh
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKA-EKLKIVCVPTS 59 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~-~~~~ltvVTnS 59 (166)
.+..+||+++.+.+++ .+...-.|..|.|++...-+-++.+..+. +-..+.++++.
T Consensus 53 ~Ls~eEr~~~~~~~~~-~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 53 LLSTEEKKQVLEIVAE-EAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3457899999999998 78755567788876433333333222111 22356677663
No 141
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=25.62 E-value=33 Score=25.57 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.1
Q ss_pred EEEECcChhHHHHHHHHHHH
Q psy481 26 AVGIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~ 45 (166)
.+.||||+|...+.+.+..+
T Consensus 34 ~vLiDSGAThsFIs~~~a~~ 53 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKK 53 (135)
T ss_pred EEEEecCCCcEEccHHHHHh
Confidence 58899999999988888754
No 142
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=25.48 E-value=2.7e+02 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=27.2
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..++.||+|.+-.++|..|... ..+++++..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~----g~~Vtli~~~ 198 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARL----GSEVTILQRS 198 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCcEEEEEcC
Confidence 57899999999999999999864 2368898865
No 143
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=25.34 E-value=3.8e+02 Score=21.87 Aligned_cols=62 Identities=19% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHhcCCCCC-CEEEECcC-----hhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 11 IAAYQAVDDNVLNN-TAVGIGSG-----STVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 11 ~IA~~A~~~~I~dg-~vI~ldsG-----sT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
.+|+...+ +.+.| ++++|-+| +|..++.+.|.+.. ....+.+|+-=......++..|+++..
T Consensus 80 ~~~~~i~~-~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~--~~~~veivPGIss~~a~aa~~g~pL~~ 147 (238)
T PRK05948 80 AAADQVWH-YLEQGEDVAFACEGDVSFYSTFTYLAQTLQELY--PQVAIQTIPGVCSPLAAAAALGIPLTL 147 (238)
T ss_pred HHHHHHHH-HHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcC--CCCCEEEECChhHHHHHHHHhCCCeec
Confidence 35566666 56666 78999988 55556666665421 123566666433333344677777654
No 144
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=25.14 E-value=3.6e+02 Score=22.34 Aligned_cols=67 Identities=9% Similarity=0.039 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHH---HHhCCCeeeeC
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL---ILKNNMVLGDL 76 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~---l~~~~i~v~~l 76 (166)
|-..+.+.+.+.=|.+.+++.=+.|.+|+.=+.+.++.. +..++++||+....... +.+.|++++..
T Consensus 98 Ea~~M~~yLi~~GVp~e~Ii~e~~s~nT~en~~~a~~i~--~~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~ 167 (239)
T PRK10834 98 EPMTMRKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVF--DTNDFIIITQRFHCERALFIALHMGIQAQCY 167 (239)
T ss_pred HHHHHHHHHHHcCCCHHHEEecCCCCCHHHHHHHHHHHh--CCCCEEEECCHHHHHHHHHHHHHcCCceEEE
Confidence 445567777773388889999999999988777666542 22469999999998663 35677766544
No 145
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=25.12 E-value=1.9e+02 Score=24.09 Aligned_cols=54 Identities=20% Similarity=0.045 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
+..+||+++.+.+++ .+...-.|+.|.|+ ++...++..+...+.+-..+.++++
T Consensus 51 Lt~eEr~~~~~~~~~-~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 51 LSTEEKKEIFRIAKD-EAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 467899999999998 67654556677664 3334344333211112234666665
No 146
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=25.00 E-value=2.2e+02 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST 34 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT 34 (166)
+..+||+++.+.+++ .+...-.|+.|.|++
T Consensus 51 Lt~~Er~~~~~~~~~-~~~~~~~viagv~~~ 80 (288)
T cd00954 51 LSVEERKQIAEIVAE-AAKGKVTLIAHVGSL 80 (288)
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEeccCCC
Confidence 457899999999998 677656778888754
No 147
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=24.96 E-value=2.9e+02 Score=23.28 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=34.6
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh--------HHHHHHHHhCCCeeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS--------FQARQLILKNNMVLGD 75 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS--------~~ia~~l~~~~i~v~~ 75 (166)
...++.+|+|-+...+|..|..+ +...++++... ......|.+.+++++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~---g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~ 229 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLL---GAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLE 229 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEee
Confidence 45799999999999999998753 22248888642 2333456778887654
No 148
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=24.93 E-value=3.1e+02 Score=22.83 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCCCCE---EEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 21 VLNNTA---VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 21 I~dg~v---I~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
+++|+. ||.|-|++..++|+.-.- .++.||.|.+-...+
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-------~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC-------HVTGITLSEEQAEYA 101 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---------EEEEEES-HHHHHHH
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc-------EEEEEECCHHHHHHH
Confidence 899994 456667777766666421 699999999876644
No 149
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=24.87 E-value=1.9e+02 Score=22.14 Aligned_cols=51 Identities=16% Similarity=0.015 Sum_probs=39.0
Q ss_pred CEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 25 TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
+.|.+-|.+++..+.+.+.+.-.....+..+++-+..++..|.+.|++...
T Consensus 175 ~~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~aig~~t~~~l~~~g~~~~~ 225 (239)
T cd06578 175 DAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVI 225 (239)
T ss_pred cEEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEECHHHHHHHHHcCCCcee
Confidence 489999999999999999742000113688999999999999988876443
No 150
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=24.68 E-value=1.1e+02 Score=23.75 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=40.1
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
+-|.|.+-|++++..+.+.+.+.. ....+..+++-+..++..+.+.|++.+
T Consensus 168 ~~~~v~ftS~~~~~~~~~~~~~~~-~~~~~~~~~~ig~~ta~~l~~~g~~~~ 218 (231)
T PF02602_consen 168 EIDAVVFTSPSAVRAFLELLKKNG-ALLKRVPIVAIGPRTAKALRELGFKVD 218 (231)
T ss_dssp TTSEEEESSHHHHHHHHHHSSGHH-HHHTTSEEEESSHHHHHHHHHTT-SCS
T ss_pred CCCEEEECCHHHHHHHHHHhHhhh-hhhhCCEEEEECHHHHHHHHHcCCCce
Confidence 459999999999999999987420 001378899999999999999998763
No 151
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=24.56 E-value=3.9e+02 Score=24.00 Aligned_cols=113 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCCCEEE----ECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHh------CCCeeeeCC-
Q psy481 9 KRIAAYQAVDDNVLNNTAVG----IGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILK------NNMVLGDLE- 77 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~----ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~------~~i~v~~l~- 77 (166)
.+.++...++ +|+...... -|+|-|=.. =+.+...++.+ ..+-+.|+-.++..++.. .++.+..|.
T Consensus 102 Q~~as~~l~q-~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg 178 (441)
T COG4098 102 QKKASNQLVQ-YIKQKEDTLVWAVTGAGKTEMI-FQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG 178 (441)
T ss_pred HHHHHHHHHH-HHHhcCcEEEEEecCCCchhhh-HHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhccCCeeeEec
Confidence 4556777777 776554333 377776432 23333322222 367788888888776632 344443331
Q ss_pred ----------------CC----CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCC
Q psy481 78 ----------------TH----PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127 (166)
Q Consensus 78 ----------------~~----~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sK 127 (166)
+. ..||+.|+ |+||. +.+..+..-..-.+++.-..+...|+-|.++|
T Consensus 179 ~S~~~fr~plvVaTtHQLlrFk~aFD~liI--DEVDA-FP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 179 DSDSYFRAPLVVATTHQLLRFKQAFDLLII--DEVDA-FPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred CCchhccccEEEEehHHHHHHHhhccEEEE--ecccc-ccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 11 25787775 77773 54544333222234555556667888888874
No 152
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=24.41 E-value=75 Score=25.29 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=19.6
Q ss_pred CCCCCEEEE----CcChhHHHHHHHHHHH
Q psy481 21 VLNNTAVGI----GSGSTVVYAVDRLAER 45 (166)
Q Consensus 21 I~dg~vI~l----dsGsT~~~la~~L~~~ 45 (166)
+++.++|.+ +||.|+..+++.|.++
T Consensus 120 i~~~~VllvDd~laTG~Tl~~ai~~L~~~ 148 (207)
T TIGR01091 120 IDERTVIVLDPMLATGGTMIAALDLLKKR 148 (207)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHHHHc
Confidence 455566655 5899999999999875
No 153
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=24.39 E-value=1.7e+02 Score=21.84 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCCCCCEEEE----CcChhHHHHHHHHHHH
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGI----GSGSTVVYAVDRLAER 45 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~l----dsGsT~~~la~~L~~~ 45 (166)
+=+++|+.-++ .+++|++|.| |+|-|+. ++.+.+.
T Consensus 7 ~t~~l~~~l~~-~l~~~~~i~l~G~lGaGKTtl--~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAK-PLDFGTVVLLKGDLGAGKTTL--VQGLLQG 45 (133)
T ss_pred HHHHHHHHHHH-hCCCCCEEEEEcCCCCCHHHH--HHHHHHH
Confidence 34466777777 7999999975 8888874 4777654
No 154
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=24.08 E-value=2.4e+02 Score=24.69 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=27.8
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..++.+|+|-+-.++|..|.+. ...++++..+.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~----g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAAL----GVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEecCC
Confidence 57899999999999999999864 23688997653
No 155
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=24.05 E-value=4.2e+02 Score=22.15 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcC--CCeEEEcChH-------HH----HHHHHhCCCeeee
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEK--LKIVCVPTSF-------QA----RQLILKNNMVLGD 75 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~--~~ltvVTnS~-------~i----a~~l~~~~i~v~~ 75 (166)
..++.+|+|.+-.++|..|.+..+... .++++++++. .. ...|.+.|+++..
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~ 210 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHE 210 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 478899999999999999976432211 2688885531 12 2245677887553
No 156
>PF02073 Peptidase_M29: Thermophilic metalloprotease (M29); InterPro: IPR000787 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M29 (aminopeptidase T family, clan M-). The protein fold of the peptidase domain and the active site residues are not known for any members of the thermophilic metallo-aminopeptidases family.; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 2AYI_D 1ZJC_A.
Probab=23.38 E-value=3.2e+02 Score=24.20 Aligned_cols=59 Identities=15% Similarity=-0.031 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcC---CCCCCEEEECcChhHHHHHHHHHHHH-hhcCCCeEEEcChHHHHHHH
Q psy481 7 EAKRIAAYQAVDDN---VLNNTAVGIGSGSTVVYAVDRLAERI-KAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 7 ~~K~~IA~~A~~~~---I~dg~vI~ldsGsT~~~la~~L~~~~-~~~~~~ltvVTnS~~ia~~l 66 (166)
+.=++.|+..++ + |++|+.|.|-++.-...|++.|.... +.+.....+.-++..+....
T Consensus 5 ~~l~kyA~llV~-~glnvq~Gq~v~I~~~~~~~~l~r~l~~~ay~aGA~~v~v~~~d~~~~r~~ 67 (398)
T PF02073_consen 5 ERLEKYAELLVK-YGLNVQPGQKVLIRAPVEAAPLARALVEEAYEAGAKYVIVNWSDEEITRAR 67 (398)
T ss_dssp HHHHHHHHHHHH-TTT---TT-EEEEEEETT-HHHHHHHHHHHHHTT-SCEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHHH-hccCCCCCCEEEEEecccHHHHHHHHHHHHHHcCCCceEEEeCchHHHHHH
Confidence 334556777775 4 79999999999999999999997542 22333566666676665544
No 157
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=23.22 E-value=4.6e+02 Score=22.17 Aligned_cols=41 Identities=29% Similarity=0.430 Sum_probs=26.0
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL 67 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~ 67 (166)
+..-+|+||+||.. =+++.+.-.. ...+..|++.. +..+..
T Consensus 77 ~~d~IIaiGGGs~i-D~aK~ia~~~---~~p~i~IPTta-tgse~t 117 (337)
T cd08177 77 GADGIVAIGGGSTI-DLAKAIALRT---GLPIIAIPTTL-SGSEMT 117 (337)
T ss_pred CCCEEEEeCCcHHH-HHHHHHHHHh---cCCEEEEcCCc-hhhhhc
Confidence 44458999999876 4466665331 23677888776 555543
No 158
>KOG0523|consensus
Probab=23.16 E-value=1.3e+02 Score=28.44 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=41.3
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh----HHHH--HHH-HhCCCeeeeCCCC---CcccEEEEcccccc
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS----FQAR--QLI-LKNNMVLGDLETH---PDLSCVIDGADEVD 93 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS----~~ia--~~l-~~~~i~v~~l~~~---~~~D~af~gad~vd 93 (166)
-|++.||+|+|+..-++.=. .+.+...+++||..= ++++ ..+ ...+.+++.+.+. ..+..+|..+++-.
T Consensus 506 ~dV~LiG~Gs~v~~cl~AA~-~L~~~gi~vrVvd~~~~kplD~~li~~~~q~~e~ri~v~ed~~~~gsi~~~~~a~~g~~ 584 (632)
T KOG0523|consen 506 PDVILIGTGSEVQECLEAAE-LLSEDGIKVRVVDPFTWKPLDVALIRSLAQSHEYRISVLEDHVPAGSIEVAVTAAWGKY 584 (632)
T ss_pred CCEEEEeccHHHHHHHHHHH-HHHhcCceEEEecccceeecchHHhhhhhcccceeEEEccCCCCCcchhheeeehhccc
Confidence 38999999999976554432 222233567777531 2222 223 3455666666543 35677777777765
Q ss_pred CC
Q psy481 94 EN 95 (166)
Q Consensus 94 ~~ 95 (166)
++
T Consensus 585 ~~ 586 (632)
T KOG0523|consen 585 PG 586 (632)
T ss_pred CC
Confidence 44
No 159
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=23.11 E-value=2.1e+02 Score=22.27 Aligned_cols=52 Identities=17% Similarity=-0.056 Sum_probs=39.2
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhh-cCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKA-EKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~-~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
+-|.|.+-|++++..+.+.+.+.-.. ...+..+++-+..++..+.+.|+...
T Consensus 177 ~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~ 229 (249)
T PRK05928 177 EVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVI 229 (249)
T ss_pred CCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcc
Confidence 57999999999999999988642000 01257789999999999999886543
No 160
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=23.06 E-value=2.1e+02 Score=27.80 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCCCCCCEEEE----CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGI----GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~l----dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
+...+|++..+ -+.+|..+.+ |+|-|..+++..|... ....++|.|++...+.++
T Consensus 249 ~Q~~ma~~V~~-~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---~~~~vvI~t~T~~Lq~Ql 307 (820)
T PRK07246 249 KQESFAKLVGE-DFHDGPASFIEAQTGIGKTYGYLLPLLAQS---DQRQIIVSVPTKILQDQI 307 (820)
T ss_pred HHHHHHHHHHH-HHhCCCcEEEECCCCCcHHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHH
Confidence 34566777777 5776766633 7777999999988642 124699999999988766
No 161
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=23.00 E-value=85 Score=22.31 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=29.9
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeC
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDL 76 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l 76 (166)
+++=.||.|...++++=+. -.+.++|++..++..|. ..|+.-+..
T Consensus 21 vv~T~sG~ta~~isk~RP~------~pIiavt~~~~~~r~l~l~~GV~p~~~ 66 (117)
T PF02887_consen 21 VVFTESGRTARLISKYRPK------VPIIAVTPNESVARQLSLYWGVYPVLI 66 (117)
T ss_dssp EEE-SSSHHHHHHHHT-TS------SEEEEEESSHHHHHHGGGSTTEEEEEC
T ss_pred EEECCCchHHHHHHhhCCC------CeEEEEcCcHHHHhhhhcccceEEEEe
Confidence 4456788888777776332 36999999999988874 555543333
No 162
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=22.87 E-value=3.8e+02 Score=22.05 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=39.7
Q ss_pred HHHHHHHhcCCCCC-CEEEECcChh---------------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 11 IAAYQAVDDNVLNN-TAVGIGSGST---------------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 11 ~IA~~A~~~~I~dg-~vI~ldsGsT---------------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.+.+.|.+ ++++| ++|=||.-|| +..+++.+.+. -...+.+=|.+..++..+.+.|..++
T Consensus 24 ~~~~~a~~-~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~---~~~plsiDT~~~~vi~~al~~G~~iI 99 (257)
T TIGR01496 24 KAVAHAER-MLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQ---PDVPISVDTYRAEVARAALEAGADII 99 (257)
T ss_pred HHHHHHHH-HHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc---CCCeEEEeCCCHHHHHHHHHcCCCEE
Confidence 35556666 78888 6888886555 44444555432 12358888999998887777787654
Q ss_pred e
Q psy481 75 D 75 (166)
Q Consensus 75 ~ 75 (166)
.
T Consensus 100 N 100 (257)
T TIGR01496 100 N 100 (257)
T ss_pred E
Confidence 3
No 163
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=22.67 E-value=3.3e+02 Score=24.11 Aligned_cols=33 Identities=9% Similarity=-0.000 Sum_probs=26.9
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..++.+|+|-+-.++|..|.+. ...+|+++.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~----g~~Vtli~~~ 215 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRL----GAEVTILEAL 215 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc----CCeEEEEeCC
Confidence 57899999999999999998754 2368888763
No 164
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.61 E-value=1e+02 Score=19.88 Aligned_cols=23 Identities=13% Similarity=-0.086 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEE
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGI 29 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~l 29 (166)
.+.-+++|+.=.. +++||++||.
T Consensus 54 ~~~ie~~AR~~lg-m~~~~E~v~~ 76 (80)
T PF04977_consen 54 PDYIEKVAREKLG-MVKPGEIVFK 76 (80)
T ss_pred HHHHHHHHHHHcC-CcCCCCEEEe
Confidence 4555677887788 8999999986
No 165
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=22.61 E-value=3.3e+02 Score=23.97 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=35.6
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh--------HHHHHHHHhCCCeeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS--------FQARQLILKNNMVLGD 75 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS--------~~ia~~l~~~~i~v~~ 75 (166)
....++.||+|-+-..+|..|... +..++++|... ......+.+.|+++..
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~---G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~ 330 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRL---GAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEW 330 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEe
Confidence 456799999999999999998753 22368888652 2223345677887654
No 166
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=22.58 E-value=42 Score=30.02 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=16.0
Q ss_pred CCCCCEEEECcChhHHHHH
Q psy481 21 VLNNTAVGIGSGSTVVYAV 39 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la 39 (166)
-++|.++|||+|||+.-++
T Consensus 141 ~~~g~~lGIDiGSTttK~V 159 (404)
T TIGR03286 141 RQEGLTLGIDSGSTTTKAV 159 (404)
T ss_pred ccCCEEEEEEcChhheeeE
Confidence 5678899999999997753
No 167
>PLN00203 glutamyl-tRNA reductase
Probab=22.51 E-value=2.9e+02 Score=25.43 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hC-CCe--eeeCCC----CCcccEEEEccc
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KN-NMV--LGDLET----HPDLSCVIDGAD 90 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~-~i~--v~~l~~----~~~~D~af~gad 90 (166)
+..+..||+|.+...+++.|..+ +..+++++.-+.+-+..+. .. +.. +..+.+ ....|+.|....
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~---G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSK---GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC
Confidence 45699999999999999999754 2236888888887777664 33 332 222222 236788776543
No 168
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=22.00 E-value=2.3e+02 Score=22.55 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=35.2
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHH------HHHHHhC-CCeee
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQA------RQLILKN-NMVLG 74 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~i------a~~l~~~-~i~v~ 74 (166)
.++..++.+|+|.+...++.+|.+. ...+++++..... ...+.+. |+++.
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~----~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~ 195 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRI----AKKVTLVHRRDKFRAEKILLDRLRKNPNIEFL 195 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhh----cCEEEEEEeCcccCcCHHHHHHHHhCCCeEEE
Confidence 4566789999999999999999764 1368888865432 3345555 77654
No 169
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=21.93 E-value=2.8e+02 Score=22.89 Aligned_cols=55 Identities=22% Similarity=0.133 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
...+|++++.+.+++ .+.+.-.|+.|.|++ +...++..+.....+-..+.++++.
T Consensus 51 ls~~Er~~~~~~~~~-~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 51 LTHEEHEELIRAVVE-AVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 457899999999999 787555677888763 3333333332111122346666665
No 170
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=21.84 E-value=29 Score=27.61 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=38.0
Q ss_pred CCceEEEEcCCCcccccCCCc-CCcccEEEccCChHHHHHHhcCCCCCCcc
Q psy481 116 TPKLVIIADHTKQSKNLGDRY-KKGIPIEVSYHTVPPILYRSGSGPDGQVK 165 (166)
Q Consensus 116 A~~~illaD~sKf~~~l~~~~-~~~~pvev~p~~~~~v~~~~~~~~~~~~~ 165 (166)
+=+.+++.|+.-+.+.+.... ..|-.|||+|-..+-+.+++.+---.||.
T Consensus 98 aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLPGv~Pkvi~~i~~~t~~piI 148 (181)
T COG1954 98 AIQRLFILDSIALEKGIKQIEKSEPDFIEVLPGVMPKVIKEITEKTHIPII 148 (181)
T ss_pred eeeeeeeecHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHHHHhcCCCEE
Confidence 347788999999887753110 14889999999999999999777666764
No 171
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=21.69 E-value=3.2e+02 Score=22.08 Aligned_cols=48 Identities=10% Similarity=0.013 Sum_probs=29.4
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCC
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNM 71 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i 71 (166)
+++|+.|.+.+...+.+++-++.... ..++++++.|..-...+.+.|.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~---G~~V~~~~~s~~~~~~~~~~g~ 210 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM---GAAVIAVDIKEEKLELAKELGA 210 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHhCC
Confidence 67888777754344555555555431 2357777777776666666665
No 172
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=76 Score=26.19 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCCCC-EEEEC--cChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 21 VLNNT-AVGIG--SGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 21 I~dg~-vI~ld--sGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
|++|+ +++|| ||||+.+++.-..+ + -+-.|--|...-..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~----G--~iYaVEfs~R~~reL 116 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGE----G--RIYAVEFSPRPMREL 116 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCC----C--cEEEEEecchhHHHH
Confidence 56776 66666 79999999888762 1 255666676665533
No 173
>PRK10537 voltage-gated potassium channel; Provisional
Probab=21.58 E-value=4.9e+02 Score=22.96 Aligned_cols=35 Identities=9% Similarity=0.050 Sum_probs=28.7
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
.+.+++|.+|.|.....+++.|.++ +.++++|.++
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~----g~~vvVId~d 272 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQR----GQAVTVIVPL 272 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHC----CCCEEEEECc
Confidence 4568899999999999999999754 2368888876
No 174
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=21.28 E-value=3.9e+02 Score=23.92 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=27.7
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
.++.++.||+|-+-.++|..|.+. + .+++++..+
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~---G-~~Vtli~~~ 212 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGI---G-LDVTVMVRS 212 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHh---C-CcEEEEEec
Confidence 367899999999999999999864 2 368888754
No 175
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=20.85 E-value=2.5e+02 Score=24.34 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=37.3
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhC--CCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKN--NMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~--~i~v~ 74 (166)
....+|.+|.|.....+++.|.++ ..++++|..+.+....+.+. +..++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~----~~~v~vid~~~~~~~~~~~~~~~~~~i 280 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKE----GYSVKLIERDPERAEELAEELPNTLVL 280 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC----CCeEEEEECCHHHHHHHHHHCCCCeEE
Confidence 356799999999999999999763 23699999998877666542 45544
No 176
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.78 E-value=74 Score=22.63 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHH
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQAR 63 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia 63 (166)
+=++|.||+|.+...+-+.+.+.+++ .++.+..-+...|
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~--~GI~ve~m~T~~A 91 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRK--KGIGVEVMDTPAA 91 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHT--TT-EEEEE-HHHH
T ss_pred CCcEEEEccCCccccCCHHHHHHHHH--cCCeEEEECHHHH
Confidence 44899999999987777777766543 3554544444443
No 177
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=20.65 E-value=2.5e+02 Score=19.96 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=22.9
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ 61 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ 61 (166)
.+..|+|-|+..+++.+.+..+..+.++.+...+..
T Consensus 5 LlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~ 40 (104)
T PRK09590 5 LIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITAT 40 (104)
T ss_pred EEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHH
Confidence 367799999999999997643332334444444443
No 178
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=20.59 E-value=1.3e+02 Score=20.81 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcCh
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGS 33 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGs 33 (166)
.++++++.+ ..+ .++||+|++.+|.
T Consensus 63 e~~~~~l~~-~~~--a~~GD~ll~~Ag~ 87 (95)
T PF02938_consen 63 EEELKALIE-RLG--AKPGDLLLFVAGK 87 (95)
T ss_dssp HHHHHHHHH-HTT----TTEEEEEEEES
T ss_pred HHHHHHHHH-HhC--CCCCCEEEEECCC
Confidence 445555544 333 7899999999998
No 179
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.34 E-value=1.9e+02 Score=24.52 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=32.2
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHHHhhcCCCeEEEc-ChH---HHHHHHHhCCCe-eeeCCC
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAERIKAEKLKIVCVP-TSF---QARQLILKNNMV-LGDLET 78 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~~~~~~~~ltvVT-nS~---~ia~~l~~~~i~-v~~l~~ 78 (166)
++..++|. ++||.|....++.|.++ +...+.++. +-+ +....+.+.++. ++..+.
T Consensus 199 v~gr~viIVDDIi~TG~Tl~~aa~~Lk~~---Ga~~I~~~~tH~v~~~~a~~~l~~~~~~~i~~t~t 262 (304)
T PRK03092 199 VEGRTCVLVDDMIDTGGTIAGAVRALKEA---GAKDVIIAATHGVLSGPAAERLKNCGAREVVVTDT 262 (304)
T ss_pred CCCCEEEEEccccCcHHHHHHHHHHHHhc---CCCeEEEEEEcccCChHHHHHHHHCCCCEEEEeee
Confidence 45445554 47999999999999875 333444443 333 333455566663 444433
No 180
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=20.31 E-value=2.4e+02 Score=22.78 Aligned_cols=50 Identities=8% Similarity=-0.085 Sum_probs=37.4
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
=|.|-+-|++++..|++.+.+... .-.++.++.-|..++..+.+.|++..
T Consensus 183 ~d~v~ftS~~~~~~~~~~~~~~~~-~~~~~~~~~ig~~ta~a~~~~G~~~~ 232 (255)
T PRK05752 183 LNGLVVSSGQGFEHLQQLAGADWP-ELARLPLFVPSPRVAEQARAAGAQTV 232 (255)
T ss_pred CCEEEECCHHHHHHHHHHhChhHH-HhcCceEEEeCHHHHHHHHHcCCCce
Confidence 388999999999999888753210 01256778889999999999987544
No 181
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=20.30 E-value=4.4e+02 Score=21.28 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=41.0
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCee---------eeCC---CCCcccEEEEccccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVL---------GDLE---THPDLSCVIDGADEV 92 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v---------~~l~---~~~~~D~af~gad~v 92 (166)
+..||+|..-..++..|.+. + .+++++..+.+....+.+.+..+ .... ....+|+.|+.....
T Consensus 3 I~IiG~G~~G~~~a~~L~~~---g-~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~~ 77 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQA---G-HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKAY 77 (304)
T ss_pred EEEECCCHHHHHHHHHHHhC---C-CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEecccc
Confidence 56899999999999999763 2 36888887655555555555533 1111 113578888876644
No 182
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.27 E-value=3.2e+02 Score=22.50 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCEEEECcChhHH
Q psy481 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVV 36 (166)
Q Consensus 3 ~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~ 36 (166)
.+..+|++++.+.+++ .+...-.|..|.|++..
T Consensus 47 ~Ls~~Er~~~~~~~~~-~~~~~~~vi~gv~~~s~ 79 (285)
T TIGR00674 47 TLSHEEHKKVIEFVVD-LVNGRVPVIAGTGSNAT 79 (285)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCCeEEEeCCCccH
Confidence 3567899999999998 78765678888886433
No 183
>PF13638 PIN_4: PIN domain; PDB: 2HWW_C 2HWX_A 2DOK_B 2HWY_B 2WP8_J.
Probab=20.22 E-value=1.2e+02 Score=21.68 Aligned_cols=39 Identities=15% Similarity=0.010 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeC
Q psy481 36 VYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL 76 (166)
Q Consensus 36 ~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l 76 (166)
...|.++.+.. ....++.|||+......+...|++...+
T Consensus 94 l~~a~~~~~~~--~~~~vvLvT~D~~l~~~A~~~gi~~~~~ 132 (133)
T PF13638_consen 94 LNCALYLQEEN--PGRKVVLVTNDKNLRLKARAEGIPAVSY 132 (133)
T ss_dssp HHHHHHHHHHC--GCEEEEEEE--HHHHHHHHHTT--EE--
T ss_pred HHHHHHHHHhc--CCCeEEEEeCCHHHHHHHhhcccccccC
Confidence 34455555431 1236999999999999998899887543
No 184
>COG2932 Predicted transcriptional regulator [Transcription]
Probab=20.18 E-value=58 Score=25.79 Aligned_cols=28 Identities=4% Similarity=0.018 Sum_probs=21.3
Q ss_pred CCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 20 NVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 20 ~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
.+++||+|+++.|.++.- ...+.++++.
T Consensus 136 ~~~~Gd~ilVd~~~~~~~------------gd~v~v~~~g 163 (214)
T COG2932 136 TYEDGDTLLVDPGVNTRR------------GDRVYVETDG 163 (214)
T ss_pred cccCCCEEEECCCCceee------------CCEEEEEEeC
Confidence 478999999999998821 1247778877
No 185
>PRK13748 putative mercuric reductase; Provisional
Probab=20.03 E-value=3.6e+02 Score=24.26 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=34.6
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh-------HHHH----HHHHhCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS-------FQAR----QLILKNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS-------~~ia----~~l~~~~i~v~ 74 (166)
.+..++.||+|.+-.++|..|.+. ..++++|+.+ .+++ ..+.+.|+++.
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~----g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~gI~i~ 328 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARL----GSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVL 328 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCEEEEEecCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 356899999999999999999864 2368888753 2222 23556777653
Done!