Query psy481
Match_columns 166
No_of_seqs 106 out of 1060
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 18:19:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l7o_A Ribose-5-phosphate isom 100.0 2.9E-43 9.9E-48 285.4 13.6 149 6-158 2-150 (225)
2 2pjm_A Ribose-5-phosphate isom 100.0 2.1E-42 7E-47 280.6 17.1 158 5-166 3-172 (226)
3 3hhe_A Ribose-5-phosphate isom 100.0 1.8E-42 6.2E-47 284.7 16.1 149 5-158 24-172 (255)
4 1lk5_A D-ribose-5-phosphate is 100.0 2.6E-41 9E-46 274.7 16.5 159 5-166 3-173 (229)
5 2f8m_A Ribose 5-phosphate isom 100.0 1.1E-40 3.6E-45 273.2 16.1 154 4-159 8-163 (244)
6 1uj6_A Ribose 5-phosphate isom 100.0 1.9E-40 6.3E-45 269.4 15.8 154 1-159 1-155 (227)
7 3uw1_A Ribose-5-phosphate isom 100.0 6.4E-41 2.2E-45 273.5 12.3 146 4-157 10-160 (239)
8 4gmk_A Ribose-5-phosphate isom 100.0 4.7E-40 1.6E-44 266.4 16.7 149 4-156 3-151 (228)
9 3kwm_A Ribose-5-phosphate isom 100.0 5.5E-41 1.9E-45 271.8 11.2 147 5-159 9-156 (224)
10 1m0s_A Ribose-5-phosphate isom 100.0 4E-40 1.4E-44 266.2 12.3 148 5-159 3-151 (219)
11 3ixq_A Ribose-5-phosphate isom 100.0 3.1E-39 1.1E-43 261.4 17.1 158 5-166 3-172 (226)
12 1o8b_A Ribose 5-phosphate isom 100.0 3E-40 1E-44 266.9 3.8 147 5-159 3-150 (219)
13 1xtz_A Ribose-5-phosphate isom 100.0 2.8E-38 9.5E-43 261.5 13.3 150 5-156 18-177 (264)
14 1vb5_A Translation initiation 99.5 2.4E-13 8.2E-18 112.6 12.2 121 5-131 92-226 (276)
15 2w48_A Sorbitol operon regulat 98.3 9.3E-07 3.2E-11 73.5 7.1 84 7-93 90-216 (315)
16 3ecs_A Translation initiation 98.3 4.4E-06 1.5E-10 70.3 9.9 119 8-132 107-239 (315)
17 2o0m_A Transcriptional regulat 98.2 4.5E-07 1.5E-11 76.5 3.2 85 7-93 122-247 (345)
18 3a11_A Translation initiation 98.2 1.3E-05 4.3E-10 68.1 12.0 133 7-146 126-271 (338)
19 1poi_B Glutaconate coenzyme A- 98.1 1.2E-05 4.1E-10 65.9 8.7 114 8-133 7-161 (260)
20 1t5o_A EIF2BD, translation ini 98.0 4.9E-05 1.7E-09 64.8 11.3 129 7-145 131-284 (351)
21 2yvk_A Methylthioribose-1-phos 98.0 3.6E-05 1.2E-09 66.1 10.3 133 7-146 158-314 (374)
22 3d3u_A 4-hydroxybutyrate COA-t 97.9 2.7E-05 9.1E-10 67.9 7.2 53 6-64 193-245 (439)
23 1t9k_A Probable methylthioribo 97.8 0.00012 4.2E-09 62.2 10.3 132 7-146 133-289 (347)
24 2a0u_A Initiation factor 2B; S 97.8 9.3E-05 3.2E-09 63.7 9.6 131 7-146 154-318 (383)
25 3rrl_A Succinyl-COA:3-ketoacid 97.8 0.00011 3.6E-09 59.4 9.3 108 13-125 11-194 (235)
26 1k6d_A Acetate COA-transferase 97.7 0.00017 5.7E-09 57.4 8.4 108 13-125 8-191 (220)
27 3cdk_A Succinyl-COA:3-ketoacid 97.5 0.00024 8.3E-09 57.3 7.7 108 13-125 11-194 (241)
28 3rrl_B Succinyl-COA:3-ketoacid 97.5 3.1E-05 1.1E-09 61.5 2.2 107 9-127 2-143 (207)
29 3d3u_A 4-hydroxybutyrate COA-t 97.4 0.00046 1.6E-08 60.1 8.2 115 8-127 9-160 (439)
30 1poi_A Glutaconate coenzyme A- 96.9 0.0062 2.1E-07 50.8 9.7 43 81-125 171-213 (317)
31 2g39_A Acetyl-COA hydrolase; c 96.8 0.0045 1.5E-07 54.8 9.0 115 9-126 14-167 (497)
32 3qli_A Coenzyme A transferase; 96.7 0.018 6.1E-07 50.6 11.8 112 12-126 28-183 (455)
33 4eu9_A Succinyl-COA:acetate co 96.7 0.015 5.1E-07 51.5 11.4 115 9-126 13-171 (514)
34 2oas_A ATOA, 4-hydroxybutyrate 96.7 0.015 5.2E-07 50.5 11.0 108 13-125 9-152 (436)
35 2nvv_A Acetyl-COA hydrolase/tr 96.5 0.0076 2.6E-07 53.5 8.3 111 13-126 8-162 (506)
36 2hj0_A Putative citrate lyase, 96.3 0.025 8.6E-07 50.3 10.5 110 13-126 52-210 (519)
37 3gk7_A 4-hydroxybutyrate COA-t 96.2 0.013 4.6E-07 51.2 7.9 113 9-126 10-158 (448)
38 3kv1_A Transcriptional repress 96.2 0.0027 9.2E-08 51.6 3.2 88 6-96 35-163 (267)
39 1xr4_A Putative citrate lyase 96.2 0.017 5.9E-07 51.2 8.6 112 13-126 49-207 (509)
40 1w2w_B 5-methylthioribose-1-ph 96.1 0.0065 2.2E-07 47.4 4.8 61 82-145 52-112 (191)
41 3nze_A Putative transcriptiona 96.0 0.0038 1.3E-07 50.8 3.3 49 6-57 36-87 (267)
42 3eh7_A 4-hydroxybutyrate COA-t 95.9 0.039 1.3E-06 48.0 9.3 114 9-126 14-162 (434)
43 2ahu_A Putative enzyme YDIF; C 95.8 0.032 1.1E-06 49.7 8.6 48 12-60 17-70 (531)
44 3efb_A Probable SOR-operon reg 95.8 0.0059 2E-07 49.5 3.4 39 5-44 39-81 (266)
45 3k6m_A Succinyl-COA:3-ketoacid 95.3 0.045 1.6E-06 48.3 7.6 111 6-127 260-406 (481)
46 2ahu_A Putative enzyme YDIF; C 95.2 0.11 3.8E-06 46.2 9.8 110 8-125 287-418 (531)
47 2gnp_A Transcriptional regulat 95.0 0.02 6.8E-07 46.3 4.0 47 8-57 39-88 (266)
48 2r5f_A Transcriptional regulat 93.8 0.042 1.4E-06 44.3 3.6 37 8-44 39-79 (264)
49 2oas_A ATOA, 4-hydroxybutyrate 93.3 0.26 9E-06 42.6 7.9 46 6-57 187-232 (436)
50 1xr4_A Putative citrate lyase 93.2 0.98 3.3E-05 39.9 11.5 118 7-132 248-424 (509)
51 1stz_A Heat-inducible transcri 91.6 0.013 4.6E-07 49.2 -2.5 50 5-67 98-148 (338)
52 3k6m_A Succinyl-COA:3-ketoacid 91.4 0.25 8.5E-06 43.5 5.3 43 81-124 165-207 (481)
53 2okg_A Central glycolytic gene 89.6 0.21 7.3E-06 39.9 3.1 47 9-57 39-88 (255)
54 3qli_A Coenzyme A transferase; 88.6 0.58 2E-05 41.0 5.3 45 7-57 219-263 (455)
55 3gk7_A 4-hydroxybutyrate COA-t 86.3 0.69 2.4E-05 40.3 4.5 48 6-59 192-239 (448)
56 3eh7_A 4-hydroxybutyrate COA-t 86.2 0.8 2.7E-05 39.7 4.8 39 6-45 196-234 (434)
57 3fwz_A Inner membrane protein 82.4 5.6 0.00019 27.9 7.3 49 24-76 8-56 (140)
58 2hj0_A Putative citrate lyase, 80.3 1.6 5.6E-05 38.6 4.4 118 7-132 251-428 (519)
59 2ri0_A Glucosamine-6-phosphate 78.6 1.5 5.1E-05 34.0 3.3 34 10-44 11-49 (234)
60 2bkx_A Glucosamine-6-phosphate 76.3 1.9 6.5E-05 33.5 3.3 34 10-44 10-49 (242)
61 1ucr_A Protein DSVD; dissimila 69.6 0.33 1.1E-05 32.5 -2.3 31 7-37 33-63 (78)
62 3l9w_A Glutathione-regulated p 65.9 35 0.0012 28.8 9.2 64 23-90 4-77 (413)
63 3ix7_A Uncharacterized protein 62.8 11 0.00039 27.3 4.7 65 7-77 52-123 (134)
64 3c85_A Putative glutathione-re 62.5 30 0.001 24.8 7.2 49 23-74 39-87 (183)
65 3llv_A Exopolyphosphatase-rela 62.4 34 0.0012 23.3 9.3 96 24-132 7-112 (141)
66 2nvv_A Acetyl-COA hydrolase/tr 56.2 25 0.00084 30.9 6.6 114 6-126 225-396 (506)
67 1fs5_A Glucosamine-6-phosphate 53.3 6.6 0.00022 30.9 2.2 21 24-44 34-54 (266)
68 2g39_A Acetyl-COA hydrolase; c 53.0 19 0.00066 31.5 5.3 113 6-126 230-400 (497)
69 4eu9_A Succinyl-COA:acetate co 49.4 35 0.0012 29.8 6.4 102 20-128 259-408 (514)
70 1ne7_A Glucosamine-6-phosphate 46.5 13 0.00044 29.9 3.0 20 25-44 35-54 (289)
71 1y89_A DEVB protein; structura 43.7 25 0.00085 27.2 4.2 32 12-44 17-50 (238)
72 3s5o_A 4-hydroxy-2-oxoglutarat 42.9 61 0.0021 26.1 6.5 56 4-60 64-120 (307)
73 3l4b_C TRKA K+ channel protien 42.7 99 0.0034 22.8 8.4 46 26-75 3-49 (218)
74 3tqh_A Quinone oxidoreductase; 42.7 1.1E+02 0.0039 23.9 8.1 66 21-91 150-225 (321)
75 3css_A 6-phosphogluconolactona 42.6 17 0.00057 28.9 3.0 21 24-44 38-58 (267)
76 3dfz_A SIRC, precorrin-2 dehyd 41.1 1.2E+02 0.0042 23.4 7.9 50 21-74 29-80 (223)
77 3i8o_A KH domain-containing pr 40.8 57 0.0019 23.8 5.5 41 34-79 93-133 (142)
78 3phh_A Shikimate dehydrogenase 40.6 54 0.0018 26.2 5.8 61 24-88 119-179 (269)
79 2wkj_A N-acetylneuraminate lya 39.8 44 0.0015 26.9 5.2 56 4-60 61-117 (303)
80 3e96_A Dihydrodipicolinate syn 39.1 37 0.0013 27.6 4.7 54 4-58 62-115 (316)
81 1w3i_A EDA, 2-keto-3-deoxy glu 37.8 59 0.002 26.0 5.7 53 4-60 49-102 (293)
82 3d0c_A Dihydrodipicolinate syn 37.2 40 0.0014 27.4 4.6 55 4-59 62-116 (314)
83 1id1_A Putative potassium chan 37.0 1E+02 0.0035 21.3 7.2 49 23-75 3-55 (153)
84 2ehh_A DHDPS, dihydrodipicolin 37.0 50 0.0017 26.4 5.1 56 4-60 50-106 (294)
85 2yxg_A DHDPS, dihydrodipicolin 36.7 53 0.0018 26.2 5.2 56 4-60 50-106 (289)
86 3cpr_A Dihydrodipicolinate syn 36.6 48 0.0017 26.7 5.0 56 4-60 66-122 (304)
87 1lss_A TRK system potassium up 36.5 91 0.0031 20.6 8.0 60 26-89 7-77 (140)
88 1f6k_A N-acetylneuraminate lya 36.5 53 0.0018 26.2 5.2 56 4-60 54-110 (293)
89 3kkj_A Amine oxidase, flavin-c 36.1 52 0.0018 23.1 4.6 28 25-56 4-31 (336)
90 4gx0_A TRKA domain protein; me 36.1 71 0.0024 27.5 6.3 50 23-76 127-177 (565)
91 2r91_A 2-keto-3-deoxy-(6-phosp 35.1 52 0.0018 26.2 4.9 53 4-60 48-101 (286)
92 2nuw_A 2-keto-3-deoxygluconate 34.1 56 0.0019 26.1 4.9 52 4-59 49-101 (288)
93 3hvz_A Uncharacterized protein 33.9 23 0.0008 23.1 2.2 27 20-46 11-37 (78)
94 1vi6_A 30S ribosomal protein S 33.9 1.6E+02 0.0056 22.7 9.9 85 5-90 51-162 (208)
95 3m5v_A DHDPS, dihydrodipicolin 33.2 64 0.0022 25.8 5.2 55 4-59 57-113 (301)
96 1o5k_A DHDPS, dihydrodipicolin 32.5 53 0.0018 26.5 4.6 56 4-60 62-118 (306)
97 2hmt_A YUAA protein; RCK, KTN, 32.4 1E+02 0.0035 20.4 5.5 48 22-73 5-52 (144)
98 3tak_A DHDPS, dihydrodipicolin 32.2 55 0.0019 26.1 4.6 55 4-59 51-106 (291)
99 1xky_A Dihydrodipicolinate syn 32.1 54 0.0018 26.4 4.5 56 4-60 62-118 (301)
100 3jv7_A ADH-A; dehydrogenase, n 31.8 1.9E+02 0.0065 22.8 9.9 68 20-90 168-248 (345)
101 2vns_A Metalloreductase steap3 31.7 1.3E+02 0.0043 22.4 6.4 61 26-90 31-92 (215)
102 4gek_A TRNA (CMO5U34)-methyltr 31.7 40 0.0014 26.2 3.7 52 10-66 58-112 (261)
103 3qze_A DHDPS, dihydrodipicolin 31.6 57 0.002 26.4 4.6 55 4-59 73-128 (314)
104 1vdm_A Purine phosphoribosyltr 31.5 37 0.0013 23.9 3.1 17 29-45 93-109 (153)
105 3flu_A DHDPS, dihydrodipicolin 31.2 58 0.002 26.1 4.6 55 4-59 57-112 (297)
106 2r8w_A AGR_C_1641P; APC7498, d 31.0 57 0.002 26.7 4.6 56 4-60 84-140 (332)
107 3b4u_A Dihydrodipicolinate syn 31.0 55 0.0019 26.2 4.4 55 4-59 53-108 (294)
108 3a5f_A Dihydrodipicolinate syn 30.9 59 0.002 25.9 4.6 56 4-60 51-107 (291)
109 2ojp_A DHDPS, dihydrodipicolin 30.7 47 0.0016 26.5 3.9 56 4-60 51-107 (292)
110 1jr2_A Uroporphyrinogen-III sy 30.4 87 0.003 24.4 5.5 53 22-74 209-261 (286)
111 2g1u_A Hypothetical protein TM 30.1 37 0.0013 23.8 2.9 49 22-74 18-67 (155)
112 2vc6_A MOSA, dihydrodipicolina 30.0 52 0.0018 26.3 4.1 55 4-59 50-105 (292)
113 3acd_A Hypoxanthine-guanine ph 29.9 37 0.0013 25.4 3.0 17 29-45 105-121 (181)
114 3c24_A Putative oxidoreductase 29.5 1.8E+02 0.006 22.4 7.1 61 26-90 14-76 (286)
115 2kmm_A Guanosine-3',5'-BIS(dip 29.4 41 0.0014 20.6 2.7 23 21-43 7-29 (73)
116 2aee_A OPRT, oprtase, orotate 29.3 70 0.0024 24.0 4.5 48 29-79 127-178 (211)
117 1tc1_A Protein (hypoxanthine p 29.2 41 0.0014 25.9 3.2 17 29-45 113-129 (220)
118 1vl1_A 6PGL, 6-phosphogluconol 29.0 22 0.00077 27.6 1.7 23 22-44 44-66 (232)
119 2rfg_A Dihydrodipicolinate syn 28.5 51 0.0017 26.5 3.8 56 4-60 50-106 (297)
120 2jbh_A Phosphoribosyltransfera 28.5 43 0.0015 25.7 3.3 17 29-45 144-160 (225)
121 3dz1_A Dihydrodipicolinate syn 28.4 97 0.0033 25.0 5.5 54 4-59 58-112 (313)
122 3qfe_A Putative dihydrodipicol 28.1 60 0.0021 26.3 4.2 55 4-59 61-116 (318)
123 3h5d_A DHDPS, dihydrodipicolin 27.9 87 0.003 25.3 5.2 54 4-59 57-113 (311)
124 1a3c_A PYRR, pyrimidine operon 27.5 60 0.0021 23.5 3.8 17 29-45 108-124 (181)
125 1hgx_A HGXPRTASE, hypoxanthine 27.0 50 0.0017 24.2 3.3 17 29-45 105-121 (183)
126 3p9z_A Uroporphyrinogen III co 27.0 73 0.0025 24.1 4.3 48 22-74 160-207 (229)
127 1kol_A Formaldehyde dehydrogen 27.0 2.5E+02 0.0085 22.6 8.6 68 21-91 183-264 (398)
128 1i5e_A Uracil phosphoribosyltr 26.7 69 0.0023 24.4 4.1 27 29-58 134-160 (209)
129 3daq_A DHDPS, dihydrodipicolin 26.7 77 0.0026 25.2 4.6 55 4-59 52-107 (292)
130 2aef_A Calcium-gated potassium 26.6 63 0.0022 24.1 3.9 47 23-75 9-55 (234)
131 4es6_A Uroporphyrinogen-III sy 26.4 71 0.0024 24.4 4.2 52 23-75 185-236 (254)
132 1o5o_A Uracil phosphoribosyltr 26.2 60 0.0021 25.2 3.7 34 21-57 134-171 (221)
133 4eez_A Alcohol dehydrogenase 1 26.2 2.1E+02 0.0073 22.4 7.2 49 21-72 161-210 (348)
134 1v9s_A Uracil phosphoribosyltr 26.2 62 0.0021 24.9 3.7 24 22-45 122-149 (208)
135 2geb_A Hypoxanthine-guanine ph 26.1 52 0.0018 24.2 3.2 17 29-45 108-124 (185)
136 3si9_A DHDPS, dihydrodipicolin 25.7 68 0.0023 26.0 4.1 55 4-59 72-127 (315)
137 2v9d_A YAGE; dihydrodipicolini 25.7 82 0.0028 25.9 4.6 56 4-60 81-137 (343)
138 3l21_A DHDPS, dihydrodipicolin 25.5 73 0.0025 25.6 4.2 55 4-59 65-120 (304)
139 1g60_A Adenine-specific methyl 25.5 48 0.0016 25.7 3.0 29 11-39 200-231 (260)
140 1pzm_A HGPRT, hypoxanthine-gua 25.3 54 0.0018 24.9 3.2 17 29-45 128-144 (211)
141 1vch_A Phosphoribosyltransfera 25.2 54 0.0018 23.6 3.1 17 29-45 130-146 (175)
142 1ufr_A TT1027, PYR mRNA-bindin 24.9 72 0.0025 23.2 3.8 17 29-45 106-122 (181)
143 1o4w_A PIN (PILT N-terminus) d 24.8 1.8E+02 0.0061 20.2 6.8 60 12-79 79-138 (147)
144 1wd5_A Hypothetical protein TT 24.8 41 0.0014 25.2 2.5 46 29-78 130-177 (208)
145 4dpp_A DHDPS 2, dihydrodipicol 24.4 1.1E+02 0.0038 25.5 5.3 54 4-58 109-163 (360)
146 2ehj_A Uracil phosphoribosyltr 24.1 67 0.0023 24.6 3.6 18 28-45 132-149 (208)
147 3fkr_A L-2-keto-3-deoxyarabona 23.7 80 0.0027 25.4 4.2 55 4-59 58-113 (309)
148 2dph_A Formaldehyde dismutase; 23.6 2.9E+02 0.01 22.3 9.3 68 21-91 183-264 (398)
149 2ywl_A Thioredoxin reductase r 23.6 96 0.0033 21.7 4.2 30 25-58 3-32 (180)
150 1yfz_A Hypoxanthine-guanine ph 23.3 62 0.0021 24.2 3.2 17 29-45 128-144 (205)
151 2x8g_A Thioredoxin glutathione 23.1 2.7E+02 0.0091 23.9 7.7 49 22-74 285-344 (598)
152 1aj0_A DHPS, dihydropteroate s 23.1 1.3E+02 0.0043 24.2 5.2 61 11-75 39-115 (282)
153 3mw8_A Uroporphyrinogen-III sy 23.1 45 0.0015 25.3 2.4 52 24-75 173-224 (240)
154 1fsg_A HGPRTASE, hypoxanthine- 23.1 62 0.0021 24.9 3.3 17 29-45 152-168 (233)
155 3o7m_A Hypoxanthine phosphorib 23.0 65 0.0022 24.1 3.2 17 29-45 104-120 (186)
156 3two_A Mannitol dehydrogenase; 22.7 1.8E+02 0.0063 23.0 6.2 67 21-91 174-244 (348)
157 3av3_A Phosphoribosylglycinami 22.4 1.3E+02 0.0044 22.8 4.9 49 26-76 8-59 (212)
158 2cqa_A RUVB-like 2; TIP48, TIP 22.1 69 0.0023 21.9 2.9 14 20-33 62-75 (95)
159 2ywu_A Hypoxanthine-guanine ph 22.1 70 0.0024 23.7 3.3 17 29-45 105-121 (181)
160 3eb2_A Putative dihydrodipicol 21.8 69 0.0024 25.7 3.4 56 4-60 54-110 (300)
161 2e55_A Uracil phosphoribosyltr 21.8 68 0.0023 24.6 3.2 17 29-45 131-147 (208)
162 1zn8_A APRT, adenine phosphori 21.7 68 0.0023 23.2 3.1 17 29-45 130-146 (180)
163 1g2q_A Adenine phosphoribosylt 21.2 70 0.0024 23.5 3.1 17 29-45 132-148 (187)
164 1l1q_A Adenine phosphoribosylt 21.1 94 0.0032 22.7 3.8 17 29-45 127-143 (186)
165 2wns_A Orotate phosphoribosylt 21.1 91 0.0031 23.4 3.8 47 29-78 121-170 (205)
166 1bd3_D Uprtase, uracil phospho 20.9 86 0.0029 24.7 3.7 17 29-45 166-182 (243)
167 2ywr_A Phosphoribosylglycinami 20.8 1.5E+02 0.0053 22.4 5.1 47 26-76 4-57 (216)
168 3sho_A Transcriptional regulat 20.8 2.3E+02 0.0078 20.0 6.1 42 22-64 38-80 (187)
169 3qfa_A Thioredoxin reductase 1 20.7 3.3E+02 0.011 23.0 7.7 49 22-74 209-268 (519)
170 2yci_X 5-methyltetrahydrofolat 20.7 2E+02 0.007 22.7 6.0 62 10-75 34-105 (271)
171 3auf_A Glycinamide ribonucleot 20.7 2.2E+02 0.0074 22.0 6.0 49 26-76 25-78 (229)
172 3ego_A Probable 2-dehydropanto 20.6 3.1E+02 0.011 21.4 7.4 61 26-91 5-77 (307)
173 3ohp_A Hypoxanthine phosphorib 20.5 79 0.0027 23.3 3.2 17 29-45 101-117 (177)
174 1boo_A Protein (N-4 cytosine-s 20.5 59 0.002 26.2 2.7 27 12-38 241-270 (323)
175 4df3_A Fibrillarin-like rRNA/T 20.3 1E+02 0.0034 24.0 3.9 41 21-66 75-118 (233)
176 2f1k_A Prephenate dehydrogenas 20.2 2.8E+02 0.0097 20.9 7.3 61 26-90 3-66 (279)
No 1
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=100.00 E-value=2.9e-43 Score=285.36 Aligned_cols=149 Identities=33% Similarity=0.487 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEE
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCV 85 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~a 85 (166)
.++|++||++|++ ||+|||+||||||||+.+++++|.++++.+++++++||||..++.+|.++|++++.+++..++|+|
T Consensus 2 ~~~K~~iA~~A~~-~V~dg~vIgLGsGST~~~~i~~L~~~~~~~~~~i~~VttS~~t~~~l~~~Gi~l~~l~~~~~iD~a 80 (225)
T 3l7o_A 2 EELKKIAGVRAAQ-YVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTAQAQALGIPLKSIDEVDSVDVT 80 (225)
T ss_dssp CHHHHHHHHHHHT-TCCTTCEEEECCSTTHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHHTCCBCCGGGSSCEEEE
T ss_pred hHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHhhhhcCCCEEEEcCCHHHHHHHhccCceEEecCcccccCEE
Confidence 4789999999999 999999999999999999999999876555568999999999999999999999999988899999
Q ss_pred EEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC
Q psy481 86 IDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS 158 (166)
Q Consensus 86 f~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~ 158 (166)
|+|||+||+++++++|+++++++||+++++|+++|+++|+|||+++||. +|+||||.|++|.+|.++|.+
T Consensus 81 ~dGADevd~~~~liKGgG~al~rEKiva~~A~~~iviaD~sK~~~~Lg~---~plPvEV~p~a~~~v~~~l~~ 150 (225)
T 3l7o_A 81 VDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDESKMVDTLGA---FRLPVEVVQYGAERLFREFEK 150 (225)
T ss_dssp EECCSEECTTSCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSCS---SCEEEEECSTTHHHHHHHHHH
T ss_pred EEcCCccCcccCeecCchhhhHHHHHHHHhCCeEEEEEecccchhhcCC---CCEEEEEehhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985 899999999999999999943
No 2
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; 1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Probab=100.00 E-value=2.1e-42 Score=280.58 Aligned_cols=158 Identities=38% Similarity=0.583 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccE
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSC 84 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~ 84 (166)
+.++|++||++|++ ||+|||+||||+|||+.+++++|.++.+.+.+++++||||+.++.+|.++|++++.+.+.. +|+
T Consensus 3 ~~~~K~~iA~~A~~-~I~~g~~IglgsGST~~~~~~~L~~~~~~~~l~itvVtnS~~~a~~l~~~gi~v~~l~~~~-iD~ 80 (226)
T 2pjm_A 3 NEDLKLKVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLVTLDEYD-VDI 80 (226)
T ss_dssp CHHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBCCTTTCC-CSE
T ss_pred hHHHHHHHHHHHHH-HCCCCCEEEECCCHHHHHHHHHHHhhhhccCCcEEEEeCcHHHHHHHHhcCCeEEeecccc-CCE
Confidence 57899999999999 9999999999999999999999987643334589999999999999999999999999885 999
Q ss_pred EEEccccccCC-CccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHh-------
Q psy481 85 VIDGADEVDEN-LVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRS------- 156 (166)
Q Consensus 85 af~gad~vd~~-~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~------- 156 (166)
+|+|||+||++ +++++|+++++++||+++++|+++|+++|+|||+++||. ++|+||||.|++|.+|.++|
T Consensus 81 afdGaDevd~~t~~likGgg~al~rEKiva~~A~~~IviaD~sK~~~~Lg~--~~~lPvEV~p~a~~~v~~~l~~~g~~~ 158 (226)
T 2pjm_A 81 AFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGE--KFPIPVEVIPSAYRVVIRALSEMGGEA 158 (226)
T ss_dssp EEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTS--SSCEEEEECGGGHHHHHHHHHHTTCEE
T ss_pred EEEcCceeccccCceeeccchhhHHHHHHHHHhCcEEEEEecchhhhccCC--CCCEEEEEehhHHHHHHHHHHHcCCce
Confidence 99999999999 999999999999999999999999999999999999985 28999999999999999999
Q ss_pred ----cCCCCCCccC
Q psy481 157 ----GSGPDGQVKS 166 (166)
Q Consensus 157 ----~~~~~~~~~~ 166 (166)
..+++||+++
T Consensus 159 ~lR~~~~~~gp~vT 172 (226)
T 2pjm_A 159 VIRLGDRKRGPVIT 172 (226)
T ss_dssp EECBCSSSSSBCBC
T ss_pred EEeecCCCCCcEEc
Confidence 3457889874
No 3
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=1.8e-42 Score=284.68 Aligned_cols=149 Identities=41% Similarity=0.584 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccE
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSC 84 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~ 84 (166)
+.++|++||++|++ ||+|||+||||||||+.+++++|.++.+. .+++++||||..++.+|.++|++++.+.+..++|+
T Consensus 24 ~~e~K~~iA~~A~~-~V~dg~vIgLGsGST~~~~i~~L~~~~~~-gl~ItvVttS~~ta~~l~~~GI~l~~l~~~~~iD~ 101 (255)
T 3hhe_A 24 VQQLKKMAALKALE-FVEDDMRLGIGSGSTVNEFIPLLGERVAN-GLRVTCVATSQYSEQLCHKFGVPISTLEKIPELDL 101 (255)
T ss_dssp HHHHHHHHHHHHHT-TCCTTEEEEECCSHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHTTCCBCCTTTCCSBSE
T ss_pred HHHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHHhhcc-CCcEEEEcCCHHHHHHHHHcCCcEEecccccccCE
Confidence 67899999999999 99999999999999999999999976432 35899999999999999999999999998889999
Q ss_pred EEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC
Q psy481 85 VIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS 158 (166)
Q Consensus 85 af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~ 158 (166)
||+|||+||+++++++|+++++++||+++++|+++|+|+|+|||+++||. +|+||||.|++|.+|.++|.+
T Consensus 102 afdGADeVD~~~~lIKGgG~al~rEKiva~~A~~~ivIaD~SK~v~~LG~---~plPVEViP~a~~~v~~~l~~ 172 (255)
T 3hhe_A 102 DIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIADETKMVKTLGA---FALPIEVNPFGIHATRIAIEK 172 (255)
T ss_dssp EEECCSEECGGGCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSSCS---SCEEEEECSTTHHHHHHHHHH
T ss_pred EEECCCccccccCeeeCchhhhHHHHHHHHhcCcEEEEEeCCCChhhhCC---CCeEEEEchhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999984 899999999999999999966
No 4
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A*
Probab=100.00 E-value=2.6e-41 Score=274.67 Aligned_cols=159 Identities=36% Similarity=0.566 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCC-CeEEEcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKL-KIVCVPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~-~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
+.++|++||++|++ +|+|||+||||+|||+.+++++|.++.+.+.+ ++++||||+.++.+|.+++++++.++...++|
T Consensus 3 ~~~~K~~IA~~Aa~-~I~dg~~I~LdsGST~~~~a~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~vi~l~~~~~~D 81 (229)
T 1lk5_A 3 VEEMKKIAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAID 81 (229)
T ss_dssp HHHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEE
T ss_pred hHHHHHHHHHHHHH-hCCCCCEEEEcChHHHHHHHHHHhhhhhhccCCCEEEECCcHHHHHHHHhCCCeEEEeCCcccCC
Confidence 57899999999999 99999999999999999999999865322223 79999999999999988899999998777999
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcC-----
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGS----- 158 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~----- 158 (166)
++|+|||+||.++++++++++++++||+++++|+++|+|+|||||+++||. ++|+||||.|++|.+|.++|.+
T Consensus 82 ~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~--~~~lPvEV~p~~~~~v~~~l~~lg~~~ 159 (229)
T 1lk5_A 82 VAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQ--KMPVPIEVIPQAWKAIIEELSIFNAKA 159 (229)
T ss_dssp EEEECCSEECTTCCEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSTTS--SCCEEEEECGGGHHHHHHHGGGGTCEE
T ss_pred EEEECCCeECCCCCeecCHHHHHHHHHHHHHhcCCeEEEEchhhhhhhcCC--CCCEEEEECcchHHHHHHHHHHcCCCe
Confidence 999999999999899999889999999999999999999999999999984 2899999999999999999943
Q ss_pred ------CCCCCccC
Q psy481 159 ------GPDGQVKS 166 (166)
Q Consensus 159 ------~~~~~~~~ 166 (166)
+++||+++
T Consensus 160 ~~R~~~~~~~~~vT 173 (229)
T 1lk5_A 160 ELRMGVNKDGPVIT 173 (229)
T ss_dssp EECBCSSSSSBCCC
T ss_pred EEeeccCCCCcEEc
Confidence 35777653
No 5
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum}
Probab=100.00 E-value=1.1e-40 Score=273.23 Aligned_cols=154 Identities=40% Similarity=0.627 Sum_probs=140.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCC-CeEEEcChHHHHHHHHhCCCeeeeCCCCCcc
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKL-KIVCVPTSFQARQLILKNNMVLGDLETHPDL 82 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~-~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~ 82 (166)
-+++.|++||++|++++|+|||+||||+|||+.+++++|.++.+.+.+ ++++||||+.++.+|.+.|++++.++...++
T Consensus 8 ~~~~~K~~iA~~Aa~~~I~dg~~IgLgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~~~~i 87 (244)
T 2f8m_A 8 HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTELKARKLGIPLTTLEKHSNI 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCEEEECCSTTTHHHHHHHHHHHHHTSSCSCEEEESSHHHHHHHHHHTCCBCCCCSSCCB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEcChHHHHHHHHHHhhhhhccCCCCEEEECCcHHHHHHHHHCCCeEEEecccCcC
Confidence 467899999999997479999999999999999999999865432233 7999999999999998889999999877789
Q ss_pred cEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcc-cccCCCcCCcccEEEccCChHHHHHHhcCC
Q psy481 83 SCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQS-KNLGDRYKKGIPIEVSYHTVPPILYRSGSG 159 (166)
Q Consensus 83 D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~-~~l~~~~~~~~pvev~p~~~~~v~~~~~~~ 159 (166)
|++|+|||+||+++++++++++++++||+++++|+++|+|+|+|||+ ++||. ++|+||||.|++|.+|.++|.+.
T Consensus 88 D~afdGaDeId~~~glikg~g~Al~kekiva~~A~~~ivlaD~SK~~~~~Lg~--~~plPvEV~p~a~~~v~~~l~~l 163 (244)
T 2f8m_A 88 DITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGDESKLCTNGLGM--TGAVPIEILTFGYEKIIENLLKI 163 (244)
T ss_dssp SEEEECCSEECTTCCEECCTTSCHHHHHHHHHTBSCEEEEEEGGGBCSSCTTC--SSCEEEEECSTTHHHHHHHHTTS
T ss_pred CEEEECCcccCCCCCcccCHHHHHHHHHHHHHhhCcEEEEEECCccccccCCC--CCcEEEEEcccHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999999999999999 99984 27999999999999999999887
No 6
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=100.00 E-value=1.9e-40 Score=269.37 Aligned_cols=154 Identities=38% Similarity=0.529 Sum_probs=138.4
Q ss_pred CCchHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCC-eEEEcChHHHHHHHHhCCCeeeeCCCC
Q psy481 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTSFQARQLILKNNMVLGDLETH 79 (166)
Q Consensus 1 ~~~~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~-ltvVTnS~~ia~~l~~~~i~v~~l~~~ 79 (166)
|...+.++|++||++|++ +|+|||+||||+|||+.+++++|.++.+.+.++ +++||||+.++.+|.++|++++.+.+
T Consensus 1 ~~~~~~~~K~~IA~~Aa~-~I~dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvVTnS~~~a~~l~~~gi~v~~l~~- 78 (227)
T 1uj6_A 1 MERPLESYKKEAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP- 78 (227)
T ss_dssp --CTTHHHHHHHHHHHHT-TCCTTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEEESSHHHHHHHHHTTCCBCCCCT-
T ss_pred CCCchHHHHHHHHHHHHH-HCCCCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEECCcHHHHHHHHhCCCeEEEcCC-
Confidence 566789999999999999 999999999999999999999998653222235 99999999999999989999999988
Q ss_pred CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcCC
Q psy481 80 PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG 159 (166)
Q Consensus 80 ~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~~ 159 (166)
+++|++|+|||+||.++.+++++++++++||++.++|+++|+++|||||+++|+. +|+||||.|++|.+|.++|.+.
T Consensus 79 ~~~D~af~Gadgvd~~~~~~~~~g~a~~kekiva~~a~~~ivlaD~sK~~~~lg~---~~lPvEV~p~~~~~v~~~l~~~ 155 (227)
T 1uj6_A 79 EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGR---GPVPVEIVPFGYRATLKAIADL 155 (227)
T ss_dssp TCEEEEEECCSEEEGGGEEECCTTSCHHHHHHHHHTEEEEEEEEEGGGBCSSSCS---SCEEEEECSTTHHHHHHHHHTT
T ss_pred CcCCEEEECCCccCccccEECCHHHHHHHHHHHHhccCCEEEEEEcchhccccCC---CceeEEECcCHHHHHHHHHHhh
Confidence 5999999999999998877889999999999998769999999999999999985 8999999999999999999654
No 7
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A*
Probab=100.00 E-value=6.4e-41 Score=273.46 Aligned_cols=146 Identities=35% Similarity=0.465 Sum_probs=137.5
Q ss_pred hHHHHHHHHHHHHHhcCCCC----CCEEEECcChhHHHHHHHHHHHHhhcCCCeE-EEcChHHHHHHHHhCCCeeeeCCC
Q psy481 4 LVEEAKRIAAYQAVDDNVLN----NTAVGIGSGSTVVYAVDRLAERIKAEKLKIV-CVPTSFQARQLILKNNMVLGDLET 78 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~d----g~vI~ldsGsT~~~la~~L~~~~~~~~~~lt-vVTnS~~ia~~l~~~~i~v~~l~~ 78 (166)
.+.++|+++|++|++ ||+| ||+||||||||+.+++++|.++. .+++ +||||..++.+|.++|+++..+++
T Consensus 10 ~~~~~K~~aA~~A~~-~V~d~~~~g~vIGLGtGST~~~~i~~L~~~~----~~i~~~V~tS~~t~~~~~~~Gi~l~~l~~ 84 (239)
T 3uw1_A 10 TQDELKRLVGEAAAR-YVTDNVPQGAVIGVGTGSTANCFIDALAAVK----DRYRGAVSSSVATTERLKSHGIRVFDLNE 84 (239)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHSCTTCEEEECCSHHHHHHHHHHHTTG----GGSCEEEESSHHHHHHHHHTTCCBCCGGG
T ss_pred CHHHHHHHHHHHHHH-HhhccCcCCCEEEECccHHHHHHHHHHHhhh----ccceEEeCCcHHHHHHHHHcCCcEEeccc
Confidence 367899999999999 9999 99999999999999999998752 2577 799999999999999999999998
Q ss_pred CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhc
Q psy481 79 HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSG 157 (166)
Q Consensus 79 ~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~ 157 (166)
..++|+||+|||+||+++++++|+|+++++||+++++|+++|+++|+|||+++||. +|+||||.|++|.+|.++|.
T Consensus 85 ~~~iD~a~DGADeVd~~l~lIKGgGgal~rEKiva~~A~~~ivIaD~sK~v~~Lg~---~plPVEViP~a~~~v~~~l~ 160 (239)
T 3uw1_A 85 IESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCIADASKRVAMLGQ---FPLPVEVVPMARTAIGRRLA 160 (239)
T ss_dssp CSCEEEEEECCSEECTTCCEECCSSSCHHHHHHHHHHEEEEEEEEEGGGBCSSBTS---SCEEEEECGGGHHHHHHHHH
T ss_pred ccccCEEEECCcccCcccCEecCchHHHHHHHHHHHhCCcEEEEEecchhhhhcCC---CCeEEEEChhHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999985 89999999999999999993
No 8
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=100.00 E-value=4.7e-40 Score=266.40 Aligned_cols=149 Identities=35% Similarity=0.498 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
+|++.|+++|++|++ ||+|||+||||||||+.+++++|.++++.+.++++.|++|..++.++.+.|+++..+++..++|
T Consensus 3 ~qd~~K~~aa~~A~~-~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~iD 81 (228)
T 4gmk_A 3 NQDELKQLVGTKAVE-WIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIKDIDEVDHID 81 (228)
T ss_dssp HHHHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSHHHHHHHHHTTCCBCCGGGSSCEE
T ss_pred CHHHHHHHHHHHHHH-hCCCCCEEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcHHHHHHHHHcCCceeChHHCCccc
Confidence 689999999999999 9999999999999999999999998766556789999999999999999999999999988999
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHh
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRS 156 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~ 156 (166)
+||||||+||+++++++|+|+++++||+++.+|+++|+++|+||++++||. +|+||||.|++|.+|.++|
T Consensus 82 ~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG~---fplPVEVip~a~~~v~~~l 151 (228)
T 4gmk_A 82 LTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLGQ---FPLPVEVIPYGSGTVFKRF 151 (228)
T ss_dssp EEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSCS---SCEEEEECSTTHHHHHHHH
T ss_pred eEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccCC---eeEEEEEehhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999985 8999999999999999999
No 9
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp}
Probab=100.00 E-value=5.5e-41 Score=271.84 Aligned_cols=147 Identities=31% Similarity=0.428 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEE-EcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC-VPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltv-VTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
+.++|++||++|++ +|+|||+||||||||+.+++++|.++. +++++ ||||..++.++.++|++++.+++..++|
T Consensus 9 ~~~~K~~iA~~A~~-~V~~g~~IglgsGST~~~~i~~L~~~~----~~itv~VtnS~~~a~~l~~~gi~l~~l~~~~~iD 83 (224)
T 3kwm_A 9 QDELKKLAATEAAK-SITTEITLGVGTGSTVGFLIEELVNYR----DKIKTVVSSSEDSTRKLKALGFDVVDLNYAGEID 83 (224)
T ss_dssp HHHHHHHHHHHHHT-TCCSSEEEEECCSHHHHHHHHHGGGCT----TTEEEEEESCHHHHHHHHHTTCCBCCHHHHCSEE
T ss_pred hHHHHHHHHHHHHH-hCCCCCEEEECCcHHHHHHHHHHHhhc----CceEEEECCcHHHHHHHHHcCCeEEecCcccccc
Confidence 57899999999999 999999999999999999999998641 37998 9999999999999999999998877999
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcCC
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG 159 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~~ 159 (166)
+||+|||+||+++++++|+++++++||+++++|+++|+++|+|||+++||. +|+||||.|++|.+|.++|.+.
T Consensus 84 ~afdGADevd~~~~liKGgg~al~rEKiva~~A~~~iviaD~sK~~~~Lg~---~plPvEV~p~a~~~v~~~l~~l 156 (224)
T 3kwm_A 84 LYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIIDESKKVNTLGN---FPLPIEVIPMARSYIARQIVKL 156 (224)
T ss_dssp EEEECCSEECTTSCEECCSSSCHHHHHHHHHTEEEEEEEEEGGGBCSSBCS---SCEEEEECGGGHHHHHHHHHHT
T ss_pred EEEECCCccccccCeecCchhhHHHHHHHHHhcCcEEEEEeCchhhhhcCC---CCeEEEEChHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999985 8999999999999999999654
No 10
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1
Probab=100.00 E-value=4e-40 Score=266.18 Aligned_cols=148 Identities=33% Similarity=0.445 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEE-EcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC-VPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltv-VTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
+.++|++||++|++ +|+|||+||||+|||+.+++++|.++ +. ++++ ||||+.++.+|.+++++++.++...++|
T Consensus 3 ~~~~K~~IA~~Aa~-~I~dg~~I~LdsGST~~~la~~L~~~---~~-~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~D 77 (219)
T 1m0s_A 3 QLEMKKLAAQAALQ-YVKADRIVGVGSGSTVNCFIEALGTI---KD-KIQGAVAASKESEELLRKQGIEVFNANDVSSLD 77 (219)
T ss_dssp HHHHHHHHHHHHGG-GCCTTSEEEECCSHHHHHHHHHHHTT---GG-GSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEE
T ss_pred cHHHHHHHHHHHHH-hCCCCCEEEEcChHHHHHHHHHHhcc---CC-CEEEEECChHHHHHHHHhCCCeEEEeCccccCC
Confidence 57899999999999 99999999999999999999999864 11 5999 9999999999988899999998767999
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcCC
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG 159 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~~ 159 (166)
++|+|||+||.++++++++++++++||+++++|+++|+|+|||||+++||. ++|+||||.|++|.+|.++|.+.
T Consensus 78 ~af~Gadgid~~~g~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~--~~~lPvEV~p~~~~~v~~~l~~l 151 (219)
T 1m0s_A 78 IYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGS--TFPLPVEVIPMARSQVGRKLAAL 151 (219)
T ss_dssp EEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTTS--SSCEEEEECGGGHHHHHHHHHHT
T ss_pred EEEECcCeECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcHHhhccCC--CCCEEEEECcchHHHHHHHHHHc
Confidence 999999999999889999889999999999999999999999999999984 28999999999999999999765
No 11
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.1e-39 Score=261.43 Aligned_cols=158 Identities=38% Similarity=0.587 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccE
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSC 84 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~ 84 (166)
|.+.|+++|++|++ ||+|||+||||||||+.+++++|.++++.+.++++.|++|..++.++.+.|+++..+++. .+|+
T Consensus 3 ~d~~K~~aa~~A~~-~V~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS~~t~~~a~~~gi~l~~l~~~-~iDl 80 (226)
T 3ixq_A 3 NEDLKLKVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAKMLAMQYEIPLVTLDEY-DVDI 80 (226)
T ss_dssp CHHHHHHHHHHHGG-GCCTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHHHHHHHHHTTCCBCCTTTC-CCSE
T ss_pred HHHHHHHHHHHHHH-hCCCCCEEEeCcHHHHHHHHHHHHHhhhhcCCeeEeecccHHHHHHHHhcCCCccccccc-cccE
Confidence 46789999999999 999999999999999999999999876655678999999999999999999999999988 5999
Q ss_pred EEEcccccc-CCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHh-------
Q psy481 85 VIDGADEVD-ENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRS------- 156 (166)
Q Consensus 85 af~gad~vd-~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~------- 156 (166)
||||||+|| +++++++|+|+++++||+++++|+++|+++|+||++++||. +||+||||.|++|.+|.++|
T Consensus 81 ~iDGADEvd~~~l~lIKGGGgAl~rEKivA~~a~~~I~I~D~sK~v~~LG~--~fplPVEVip~a~~~v~~~l~~lG~~~ 158 (226)
T 3ixq_A 81 AFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVLVDESKLVKKLGE--KFPIPVEVIPSAYRVVIRALSEMGGEA 158 (226)
T ss_dssp EEECCSEEETTTCCEECCTTSCHHHHHHHHHHSSEEEEEEEGGGEESSTTS--SSCEEEEECGGGHHHHHHHHHHTTCEE
T ss_pred EEeCcchhccccceEEecchHHHHHHHHHHHHhhheEEEeccccchhhcCC--CCCccEEEechHHHHHHHHHHHcCCCc
Confidence 999999998 57899999999999999999999999999999999999985 38999999999999999999
Q ss_pred ----cCCCCCCccC
Q psy481 157 ----GSGPDGQVKS 166 (166)
Q Consensus 157 ----~~~~~~~~~~ 166 (166)
...++||+++
T Consensus 159 ~~R~~~~~~gp~vT 172 (226)
T 3ixq_A 159 VIRLGDRKRGPVIT 172 (226)
T ss_dssp EECBCSSSSSBCBC
T ss_pred eEEeeccCCCceEe
Confidence 3456788764
No 12
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Probab=100.00 E-value=3e-40 Score=266.88 Aligned_cols=147 Identities=32% Similarity=0.433 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEE-EcChHHHHHHHHhCCCeeeeCCCCCccc
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC-VPTSFQARQLILKNNMVLGDLETHPDLS 83 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltv-VTnS~~ia~~l~~~~i~v~~l~~~~~~D 83 (166)
+.++|++||++|++ +|+|||+||||+|||+.+++++|.++ +. ++++ ||||+.++.+|.+++++++.++...++|
T Consensus 3 ~~~~K~~IA~~Aa~-lI~dg~~I~LdsGST~~~la~~L~~~---~~-~itv~VTnS~~~a~~l~~~gi~vi~l~~~~~~D 77 (219)
T 1o8b_A 3 QDELKKAVGWAALQ-YVQPGTIVGVGTGSTAAHFIDALGTM---KG-QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLG 77 (219)
T ss_dssp ---------------------CEEECCSCC-------------------CCEEESCCC------------CCGGGCSCEE
T ss_pred cHHHHHHHHHHHHH-hCCCCCEEEEcChHHHHHHHHHHhcc---CC-CEEEEECCcHHHHHHHHhCCCeEEEeCccCcCC
Confidence 47899999999999 99999999999999999999999764 11 6999 9999999999988899999988777999
Q ss_pred EEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEccCChHHHHHHhcCC
Q psy481 84 CVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSYHTVPPILYRSGSG 159 (166)
Q Consensus 84 ~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p~~~~~v~~~~~~~ 159 (166)
++|+|||+||+++++++++++++++||+++++|+++|+|+|||||+++||. +|+||||.|++|.+|.++|.+.
T Consensus 78 ~af~Gadgid~~~~~~~~~~~a~~kekiv~~~A~~~ivlaD~SK~~~~lg~---~~lPvEV~p~~~~~v~~~l~~l 150 (219)
T 1o8b_A 78 IYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILGK---FPLPVEVIPMARSAVARQLVKL 150 (219)
T ss_dssp EEEECCSEECTTSCEECCCCC-HHHHHHHHHHEEEEEEEEEGGGBCSSBTS---SCEEEEECGGGHHHHHHHHHHT
T ss_pred EEEECcceECCCCCeecCHHHHHHHHHHHHHhcCcEEEEEeCcccccccCC---CcEEEEEChhHHHHHHHHHHHc
Confidence 999999999999889999899999999999999999999999999999985 8999999999999999999765
No 13
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=261.46 Aligned_cols=150 Identities=47% Similarity=0.822 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHhcCCC--CCCEEEECcChhHHHHHHHHHHHHhhcCC-----CeEEEcChHHHHHHHHhCCCeeeeCC
Q psy481 5 VEEAKRIAAYQAVDDNVL--NNTAVGIGSGSTVVYAVDRLAERIKAEKL-----KIVCVPTSFQARQLILKNNMVLGDLE 77 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~--dg~vI~ldsGsT~~~la~~L~~~~~~~~~-----~ltvVTnS~~ia~~l~~~~i~v~~l~ 77 (166)
+.++|++||++|++++|+ |||+||||+|||+.+++++|.++.+.+.+ ++++||||+.++.+|.+.|++++.++
T Consensus 18 ~~~~K~~IA~~Aa~~~I~~~dg~~IgLgsGST~~~~a~~L~~~~~~~~l~~~~~~itvVTnS~~~a~~l~~~gi~v~~l~ 97 (264)
T 1xtz_A 18 LEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIE 97 (264)
T ss_dssp -CHHHHHHHHHHHHHHCCTTTCCEEEECCCSSTHHHHHHHHHHHTSTTTHHHHTTCEEEESSHHHHHHHHHTTCEECCTT
T ss_pred HHHHHHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHHHhHhhhccccccccCCEEEECCcHHHHHHHHHCCCeEEEeh
Confidence 467999999999964799 99999999999999999999865321111 49999999999999988899999998
Q ss_pred CCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcc-cccCCCcCC--cccEEEccCChHHHHH
Q psy481 78 THPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQS-KNLGDRYKK--GIPIEVSYHTVPPILY 154 (166)
Q Consensus 78 ~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~-~~l~~~~~~--~~pvev~p~~~~~v~~ 154 (166)
...++|++|+|||+||+++++++++++++++||+++++|+++|+|+|+|||+ ++||.. + |+||||.|++|.+|.+
T Consensus 98 ~~~~iD~afdGADgId~~~~likg~g~A~~kekiva~~A~~~IvlaD~SK~~~~~Lg~~--~~~plPVEV~p~a~~~v~~ 175 (264)
T 1xtz_A 98 QYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKN--WRQGVPIEIVPSSYVRVKN 175 (264)
T ss_dssp TCCSEEEEEECCSEECTTSCEECCTTSCHHHHHHHHTTEEEEEEEEEGGGBCSSSBTSS--CCSCEEEEECGGGHHHHHH
T ss_pred hcCcCCEEEECCcccCCCCCeecCHHHHHHHHHHHHHhhCcEEEEEEcccccccccccc--CCCCEeEEEChhHHHHHHH
Confidence 7779999999999999999999999999999999999999999999999999 999842 6 9999999999999999
Q ss_pred Hh
Q psy481 155 RS 156 (166)
Q Consensus 155 ~~ 156 (166)
+|
T Consensus 176 ~l 177 (264)
T 1xtz_A 176 DL 177 (264)
T ss_dssp HH
T ss_pred HH
Confidence 99
No 14
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=99.49 E-value=2.4e-13 Score=112.64 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcCCCeEEEc-C------hHHHHHHHHhCCCeeeeC
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEKLKIVCVP-T------SFQARQLILKNNMVLGDL 76 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~~~ltvVT-n------S~~ia~~l~~~~i~v~~l 76 (166)
..+.|++||+.|++ +|++|++|. ++.|+|+..+++.+.++ +++++|++ + +..+|.+|.+.|++++.+
T Consensus 92 ~~~~~~~Ia~~a~~-~I~~g~~IlT~~~s~Tv~~~l~~a~~~----~~~~~V~v~etrP~~qG~~~a~~L~~~gI~vtli 166 (276)
T 1vb5_A 92 MEEAKRELASIGAQ-LIDDGDVIITHSFSSTVLEIIRTAKER----KKRFKVILTESSPDYEGLHLARELEFSGIEFEVI 166 (276)
T ss_dssp HHHHHHHHHHHHHH-HCCTTEEEECCSCCHHHHHHHHHHHHT----TCCEEEEEECCTTTTHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHH-HccCCCEEEEeCCChHHHHHHHHHHHc----CCeEEEEEeCCCcchhhHHHHHHHHHCCCCEEEE
Confidence 45779999999999 999999999 99999999999988653 23677777 8 888999998899988766
Q ss_pred CCC------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccc
Q psy481 77 ETH------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKN 131 (166)
Q Consensus 77 ~~~------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~ 131 (166)
.+. .++|++|+|||+|..++++..--|...+. .+..+++..+|+++|++||...
T Consensus 167 ~dsa~~~~m~~vd~vivGAd~i~~nG~v~nkiGt~~iA-~~A~~~~vp~~V~a~~~K~~~~ 226 (276)
T 1vb5_A 167 TDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLA-LACHENAIPFYVAAETYKFHPT 226 (276)
T ss_dssp CGGGHHHHHTTCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSS
T ss_pred cHHHHHHHHccCCEEEEcccEEecCCCEeechhHHHHH-HHHHHcCCCEEEeccccccCcc
Confidence 432 37999999999999999886655555554 6677889999999999999987
No 15
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=98.33 E-value=9.3e-07 Score=73.50 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcC----CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh-------------HHHHHHHH-h
Q psy481 7 EAKRIAAYQAVDDN----VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS-------------FQARQLIL-K 68 (166)
Q Consensus 7 ~~K~~IA~~A~~~~----I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS-------------~~ia~~l~-~ 68 (166)
++|++||++|++ + |++|++|||++|||+..++++|.... ...++++||+. ..++..+. .
T Consensus 90 ~~k~~ia~~AA~-~l~~~i~~~~~igl~~GsT~~~~~~~L~~~~--~~~~~~vv~l~ggl~~~~~~~~~~~~i~~~la~~ 166 (315)
T 2w48_A 90 EQLSAMGQHGAL-LVDRLLEPGDIIGFSWGRAVRSLVENLPQRS--QSRQVICVPIIGGPSGKLESRYHVNTLTYGAAAR 166 (315)
T ss_dssp HHHHHHHHHHHH-HHHHHCCTTCEEEECCSHHHHHHHTTSCCCS--SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhCCCCCEEEECChHHHHHHHHhhcccc--CCCCcEEEEcCCCCCCCCccccCHHHHHHHHHHH
Confidence 479999999998 8 99999999999999999999996420 11379999952 34555553 4
Q ss_pred CCCeeeeCC-------------------------CCCcccEEEEcccccc
Q psy481 69 NNMVLGDLE-------------------------THPDLSCVIDGADEVD 93 (166)
Q Consensus 69 ~~i~v~~l~-------------------------~~~~~D~af~gad~vd 93 (166)
.+.+...+. ...++|++|+|+.+..
T Consensus 167 ~~~~~~~l~~P~~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIGg~~ 216 (315)
T 2w48_A 167 LKAESHLADFPALLDNPLIRNGIMQSQHFKTISSYWDSLDVALVGIGSPA 216 (315)
T ss_dssp TTCEECCCCSBSBCSSHHHHHHHHHSHHHHHHHHHHTTCSEEEECCBCTT
T ss_pred HCCceeEeeCCcccCCHHHHHHHHhChHHHHHHHHHhcCCEEEEccCcch
Confidence 465443220 0137999999999654
No 16
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=98.27 E-value=4.4e-06 Score=70.32 Aligned_cols=119 Identities=13% Similarity=0.069 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcCCCeE-EEcC------hHHHHHHHHhCCCeeeeCCCC
Q psy481 8 AKRIAAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEKLKIV-CVPT------SFQARQLILKNNMVLGDLETH 79 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~~~lt-vVTn------S~~ia~~l~~~~i~v~~l~~~ 79 (166)
.+++||+.+++ +|++|++|. .+.++|+..++....+. + +++. +|+- ....+.+|.+.|+++..+-+.
T Consensus 107 a~~~I~~~~~~-~I~~g~~ILTh~~S~tv~~~l~~A~~~---g-k~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds 181 (315)
T 3ecs_A 107 SRNKIADLCHT-FIKDGATILTHAYSRVVLRVLEAAVAA---K-KRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA 181 (315)
T ss_dssp HHHHHHHHHGG-GCCTTEEEEECSCCHHHHHHHHHHHTT---T-CCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG
T ss_pred HHHHHHHHHHH-HcCCCCEEEEcCCcHHHHHHHHHHHHc---C-CeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh
Confidence 36789999999 999999876 47778888877665432 2 2333 3333 234677889999987665321
Q ss_pred ------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 80 ------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 80 ------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.++|++|+|||.|..+|++..--|...+- -+..+....+|++++++||....
T Consensus 182 a~~~~m~~vd~VivGAd~i~~nG~v~nkiGT~~iA-l~Ak~~~vP~~V~a~~~K~~~~~ 239 (315)
T 3ecs_A 182 AVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMA-VCAKAQNKPFYVVAESFKFVRLF 239 (315)
T ss_dssp GHHHHGGGCSEEEEECSEECTTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCSCC
T ss_pred HHHHHHHhCCEEEECceEEecCCCeeehhhhHHHH-HHHHHhCCCEEEEeccccccccC
Confidence 37999999999999999886655544433 34445667999999999998764
No 17
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=98.24 E-value=4.5e-07 Score=76.48 Aligned_cols=85 Identities=12% Similarity=0.160 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcC----CCC-CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc-----------ChHHHHHHHHh-C
Q psy481 7 EAKRIAAYQAVDDN----VLN-NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP-----------TSFQARQLILK-N 69 (166)
Q Consensus 7 ~~K~~IA~~A~~~~----I~d-g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT-----------nS~~ia~~l~~-~ 69 (166)
++|++||++|++ + |++ |++|||++|||+..++++|.... ....++++|| ++..++..+.+ .
T Consensus 122 ~~k~~ia~~AA~-~l~~~i~~~~~~igl~~GsT~~~~~~~L~~~~-~~~~~v~vv~l~ggl~~~~~~~~~~i~~~la~~~ 199 (345)
T 2o0m_A 122 KVLSDFGDVLTN-TLNLLLPNGENTIAVMGGTTMAMVAENMGSLE-TEKRHNLFVPARGGIGEAVSVQANSISAVMANKT 199 (345)
T ss_dssp HHHHHHHHHHHH-HHHHHCCSEEEEEEECCSHHHHHHHHTCCCCC-CSSEEEEEEESBSCCCCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHhcCcCCCEEEECCcHHHHHHHHHhhhcc-CCCCCcEEEEcCCcCCCCcccCHHHHHHHHHHHh
Confidence 379999999998 7 899 99999999999999999996410 0012799999 88888887754 3
Q ss_pred CCeeeeC------C--------C----------CCcccEEEEcccccc
Q psy481 70 NMVLGDL------E--------T----------HPDLSCVIDGADEVD 93 (166)
Q Consensus 70 ~i~v~~l------~--------~----------~~~~D~af~gad~vd 93 (166)
+.+...+ . . ..++|++|+|+.+.+
T Consensus 200 ~~~~~~l~~P~~~~~~~~~~l~~~~~~~~~l~~~~~~DiailGIG~~~ 247 (345)
T 2o0m_A 200 GGNYRALYVPEQLSRETYNSLLQEPSIQEVLTLISHANCVVHSIGRAL 247 (345)
T ss_dssp TCEECCCCCCSSCCHHHHHHHHTCHHHHHHHHHHHTCSEEEECCEEHH
T ss_pred CCceEEEeccccCCHHHHHHHHhChHHHHHHHHHHcCCEEEEccCCch
Confidence 5543221 0 1 126999999999875
No 18
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=98.23 E-value=1.3e-05 Score=68.06 Aligned_cols=133 Identities=14% Similarity=0.008 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhcCCCCCCEEE-ECcChhHHHHHHHHHHHHhhcCCCeEEEcCh------HHHHHHHHhCCCeeeeCCC-
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVG-IGSGSTVVYAVDRLAERIKAEKLKIVCVPTS------FQARQLILKNNMVLGDLET- 78 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~-ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS------~~ia~~l~~~~i~v~~l~~- 78 (166)
+..++||+.+++ +|++|++|. .+-++|+..+++...++ ++.--++|+-| -.+|.+|.+.|+++..+-+
T Consensus 126 ~~~~~I~~~g~~-~I~~g~~ILTh~~S~tvl~~l~~A~~~---gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Ds 201 (338)
T 3a11_A 126 KALERIGEFGAK-RIEDGDVIMTHCHSKAAISVMKTAWEQ---GKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDS 201 (338)
T ss_dssp HHHHHHHHHHHT-TCCTTCEEEECSCCHHHHHHHHHHHHT---TCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEeCCcHHHHHHHHHHHHC---CCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehH
Confidence 345779999999 999999877 46677888887776543 22222344443 2357788999998765421
Q ss_pred -----CCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEcc
Q psy481 79 -----HPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVSY 146 (166)
Q Consensus 79 -----~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~p 146 (166)
..++|++|+|||.|-.+|++..--|...+- -+.-+...-+|++++++||....... ..+|+|--+
T Consensus 202 a~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~~~~g--~~i~iE~r~ 271 (338)
T 3a11_A 202 AARHYMKMTDKVVMGADSITVNGAVINKIGTALIA-LTAKEHRVWTMIAAETYKFHPETMLG--QLVEIEMRD 271 (338)
T ss_dssp GTTTTGGGCSEEEECCSEECTTSCEEEETTHHHHH-HHHHHTTCEEEEECCGGGBCSCCSSS--SCCCCCBCC
T ss_pred HHHHHHHhCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEecccceecccCCCC--cccccccCC
Confidence 147999999999999999886544443332 23345567899999999999886431 346766543
No 19
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=98.09 E-value=1.2e-05 Score=65.91 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH------------HHHhCCCee--
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ------------LILKNNMVL-- 73 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~------------~l~~~~i~v-- 73 (166)
.++.||+.|++ .|+||+++++|.| .-..+++.+.+. ..+++++.+.+--+.. -+. .+...
T Consensus 7 ~~e~Ia~~aA~-~i~dG~~v~lGiG-iP~~va~~~~~~---~~~~l~l~~E~G~lg~~p~~~~~~~~d~~~~-~~a~~~~ 80 (260)
T 1poi_B 7 NKEMQAVTIAK-QIKNGQVVTVGTG-LPLIGASVAKRV---YAPDCHIIVESGLMDCSPVEVPRSVGDLRFM-AHCGCIW 80 (260)
T ss_dssp HHHHHHHHHHT-TCCTTCEEECCSS-HHHHHHHHHHHT---TCTTCEEEETTTEEEECCSSCCSSTTCHHHH-TSEEEEC
T ss_pred HHHHHHHHHHH-hCCCCCEEEeCCC-HHHHHHHHHHHh---cCCCEEEEEeCceecCcccCcccCccCCCcE-eehhhhc
Confidence 46799999999 8999999999999 777888888762 1247877774411000 000 00000
Q ss_pred -----e-e-----CCCCCcccEEEEccccccCCCccc--------------cCCcchHHHHHHHHhhCCceEEEEcCC--
Q psy481 74 -----G-D-----LETHPDLSCVIDGADEVDENLVLI--------------KGGGGCLTQEKIVASCTPKLVIIADHT-- 126 (166)
Q Consensus 74 -----~-~-----l~~~~~~D~af~gad~vd~~~~~~--------------~~~~~a~~~ek~i~~~A~~~illaD~s-- 126 (166)
. + +.. .++|++|+|+-+||..+++- .|.||+. -++..|+++|++ +|+
T Consensus 81 ~~~~~fd~~~~~~~~~-g~~Dv~ilGa~qVD~~Gnvn~s~iG~~~~p~~~~~G~GGa~----D~~~~A~~~iv~-~h~~r 154 (260)
T 1poi_B 81 PNVRFVGFEINEYLHK-ANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGAN----GIATYSNTIIMM-QHEKR 154 (260)
T ss_dssp CHHHHHHHHHHHHHHT-CCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHH----HHHHHSCEEEEC-CCCTT
T ss_pred CHHHHhcccchhhhhc-CCccEEEeChHHhCCCCCccccccCCcCCCceEeecccchH----HHHhCCCEEEEE-ECCCC
Confidence 0 1 112 37899999999999887553 2333322 244688999999 997
Q ss_pred CcccccC
Q psy481 127 KQSKNLG 133 (166)
Q Consensus 127 Kf~~~l~ 133 (166)
||++++.
T Consensus 155 k~V~~v~ 161 (260)
T 1poi_B 155 RFMNKID 161 (260)
T ss_dssp TBCSSCS
T ss_pred eecccCc
Confidence 7887765
No 20
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=98.01 E-value=4.9e-05 Score=64.77 Aligned_cols=129 Identities=15% Similarity=0.073 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEE----------CcChhHHHHHHHHHHHHhhcCCCeEEEcChH-------HHHHHHHhC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGI----------GSGSTVVYAVDRLAERIKAEKLKIVCVPTSF-------QARQLILKN 69 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~l----------dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~-------~ia~~l~~~ 69 (166)
+..++|++.+++ +|++|++|.- |.| |+..+++...++ ++.--++|+-|- .+|.+|.+.
T Consensus 131 ~~~~~I~~~g~~-~I~~g~~ILThcnsg~lat~g~g-tal~~l~~A~~~---gk~~~V~v~EtRP~~qG~rlta~eL~~~ 205 (351)
T 1t5o_A 131 ERNRKMGEYGAE-LLEDGDVVLTYCNAGRLATVDWG-TALGVVRSAVEQ---GKEIRVIACETRPLNQGSRLTCWELMED 205 (351)
T ss_dssp HHHHHHHHHHHT-TCCTTCEEEECSCCSSSSSSSSC-SHHHHHHHHHHT---TCCCEEEEECCTTTTHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEecCCccccccCCC-hHHHHHHHHHHC---CCEEEEEEeCCCcccccHHHHHHHHHhC
Confidence 456679999999 9999999987 334 566766665543 222223444332 257788999
Q ss_pred CCeeeeCCCC--------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCccc
Q psy481 70 NMVLGDLETH--------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIP 141 (166)
Q Consensus 70 ~i~v~~l~~~--------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~p 141 (166)
|+++..+-+. ..+|++|+|||.|-.+| +..--|...+- -+.-+...-+|++++++||... .. + ..+|
T Consensus 206 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG-v~NKiGT~~lA-l~Ak~~~vPfyV~a~~~k~d~~-~~-g-~~i~ 280 (351)
T 1t5o_A 206 GIDVTLITDSMVGIVMQKGMVDKVIVGADRIVRDA-VFNKIGTYTVS-VVAKHHNIPFYVAAPKATFDWE-RT-A-KDVV 280 (351)
T ss_dssp TCCEEEECGGGHHHHHHTTCCSEEEECCSEEETTE-EEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTT-CC-G-GGCC
T ss_pred CCCEEEEehhHHHHHhhcCCCCEEEECccchhhcC-cccccCHHHHH-HHHHHcCCCEEEeCccceeccc-cC-C-Cccc
Confidence 9987765321 24999999999999998 64433333322 2333556789999999999877 43 2 3577
Q ss_pred EEEc
Q psy481 142 IEVS 145 (166)
Q Consensus 142 vev~ 145 (166)
+|--
T Consensus 281 iEer 284 (351)
T 1t5o_A 281 IEER 284 (351)
T ss_dssp CCBC
T ss_pred cccC
Confidence 7643
No 21
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=98.00 E-value=3.6e-05 Score=66.12 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEC--cC-------hhHHHHHHHHHHHHhhcCCCeEEEcChH-------HHHHHHHhCC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIG--SG-------STVVYAVDRLAERIKAEKLKIVCVPTSF-------QARQLILKNN 70 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ld--sG-------sT~~~la~~L~~~~~~~~~~ltvVTnS~-------~ia~~l~~~~ 70 (166)
+..++|++.+++ +|++|++|.-= || +|+..+++...++ ++.--++|+-|- .+|.+|.+.|
T Consensus 158 ~~~~~I~~~g~~-~I~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~---gk~~~V~v~EtRP~~qG~rltA~eL~~~G 233 (374)
T 2yvk_A 158 ETCRLIGQNALQ-LFKKGDRIMTICNAGSIATSRYGTALAPFYLAKQK---DLGLHIYACETRPVLQGSRLTAWELMQGG 233 (374)
T ss_dssp HHHHHHHHHHGG-GCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHHHT---TCCCEEEEECCTTTTHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEecCCCccccCCCcHHHHHHHHHHHc---CCEEEEEEeCCCCccccHHHHHHHHHHcC
Confidence 456679999999 99999999872 22 2566666665543 222123444322 2577889999
Q ss_pred CeeeeCCCC--------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccE
Q psy481 71 MVLGDLETH--------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPI 142 (166)
Q Consensus 71 i~v~~l~~~--------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pv 142 (166)
+++..+-+. ..+|++|+|||.|-.+|.+..--|...+- -+.-+...-+|++++.+||..+.... ..+|+
T Consensus 234 IpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~g--~~i~i 310 (374)
T 2yvk_A 234 IDVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVKCG--ADIPI 310 (374)
T ss_dssp CEEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSG--GGSCC
T ss_pred CCEEEEehhHHHHHhhhcCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeCccCCCc--ccccc
Confidence 987765321 24999999999999998886544443332 23334567899999999998876432 25777
Q ss_pred EEcc
Q psy481 143 EVSY 146 (166)
Q Consensus 143 ev~p 146 (166)
|--+
T Consensus 311 Eer~ 314 (374)
T 2yvk_A 311 EERD 314 (374)
T ss_dssp CBCC
T ss_pred ccCC
Confidence 6543
No 22
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.87 E-value=2.7e-05 Score=67.93 Aligned_cols=53 Identities=8% Similarity=0.063 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~ 64 (166)
.+.+++||+.|++ +|+||+++.+|.|++-..++.+|.++ .++.+.|.-+.-..
T Consensus 193 ~~~~~~Ia~~~a~-~i~dg~~lqlGiG~ip~av~~~l~~~-----~~l~i~te~~~~~~ 245 (439)
T 3d3u_A 193 SDLELRIGQNCAS-LIKDGDTLQLGIGGIPDAVLRALEGH-----KDLGIHTEMFTDGV 245 (439)
T ss_dssp CHHHHHHHHHHHT-TCCTTCEEEECSSHHHHHHHHTTTTC-----CSBEEECSCBCHHH
T ss_pred ChHHHHHHHHHHH-hcCCCCEEEeccchHHHHHHHHHhhC-----CCceEEEEEecchh
Confidence 4678999999999 99999999999999999999999864 47889888655444
No 23
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=97.81 E-value=0.00012 Score=62.23 Aligned_cols=132 Identities=14% Similarity=0.128 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEEC--cCh-------hHHHHHHHHHHHHhhcCCCeE-EEcChH-------HHHHHHHhC
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIG--SGS-------TVVYAVDRLAERIKAEKLKIV-CVPTSF-------QARQLILKN 69 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ld--sGs-------T~~~la~~L~~~~~~~~~~lt-vVTnS~-------~ia~~l~~~ 69 (166)
+..++|++.+++ +|++|++|.-= ||+ |+..+++...++ ++ .+. +++-|- .+|.+|.+.
T Consensus 133 ~~~~~I~~~g~~-~I~~g~~ILThcns~~lat~~~gtvl~~l~~A~~~---gk-~~~V~v~EtRP~~qG~rlta~eL~~~ 207 (347)
T 1t9k_A 133 EVNKAIGKNGAQ-LIKDGSTILTHCNAGALATVDYGTALGVIRAAVES---GK-RIRVFADETRPYLQGARLTAWELMKD 207 (347)
T ss_dssp HHHHHHHHHHHT-TSCTTEEEEECSCCSGGGSSSSCSHHHHHHHHHHT---TC-CEEEEEECCTTTTHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHH-HhCCCCEEEEecCCCccccCCccHHHHHHHHHHHC---CC-eEEEEEeCCCCccccHHHHHHHHHhC
Confidence 456779999999 99999998762 332 777777766543 22 333 344321 257788999
Q ss_pred CCeeeeCCCC--------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCccc
Q psy481 70 NMVLGDLETH--------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIP 141 (166)
Q Consensus 70 ~i~v~~l~~~--------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~p 141 (166)
|+++..+-+. ..+|++|+|||.|-.+|.+..--|...+- -+.-+...-+|++++++||....... ..+|
T Consensus 208 GI~vtlI~Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lA-l~Ak~~~vPfyV~ap~~k~d~~~~~g--~~i~ 284 (347)
T 1t9k_A 208 GIEVYVITDNMAGWLMKRGLIDAVVVGADRIALNGDTANKIGTYSLA-VLAKRNNIPFYVAAPVSTIDPTIRSG--EEIP 284 (347)
T ss_dssp TCEEEEECGGGHHHHHHTTCCSEEEECCSEEETTSCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSG--GGSC
T ss_pred CCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeccccCCc--cccc
Confidence 9987765321 24999999999999998886544443332 23345567899999999998775431 3567
Q ss_pred EEEcc
Q psy481 142 IEVSY 146 (166)
Q Consensus 142 vev~p 146 (166)
+|--+
T Consensus 285 iE~r~ 289 (347)
T 1t9k_A 285 IEERR 289 (347)
T ss_dssp CCBCC
T ss_pred cccCC
Confidence 66433
No 24
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=97.81 E-value=9.3e-05 Score=63.75 Aligned_cols=131 Identities=14% Similarity=0.021 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCCC--------CCCEEEE----------CcChhHHHHHHHHHHHHhhcCCCeE-EEcChH-------
Q psy481 7 EAKRIAAYQAVDDNVL--------NNTAVGI----------GSGSTVVYAVDRLAERIKAEKLKIV-CVPTSF------- 60 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~--------dg~vI~l----------dsGsT~~~la~~L~~~~~~~~~~lt-vVTnS~------- 60 (166)
+..++|++.+++ +|+ +|++|.- |.| |++.+++...++ ++ .+. +++-|-
T Consensus 154 ~~~~~I~~~g~~-~I~~~~~~~~~~g~~ILThcnsg~Lat~g~g-Tal~~l~~A~~~---gk-~~~V~v~EtRP~~qGar 227 (383)
T 2a0u_A 154 AFNEGIMRHGAA-HILAAAKAEGRDKVSILTICNTGALATSRYG-TALGVVRQLFYD---GK-LERVYACETRPWNQGAR 227 (383)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHTTCSSEEEEECSCCSTTTSSSSC-SHHHHHHHHHHT---TC-EEEEEEECCTTTTHHHH
T ss_pred HHHHHHHHHHHH-HhhhhccccCCCCCEEEEecCCcchhcCCCc-hHHHHHHHHHHc---CC-eEEEEEeCCCCccchHH
Confidence 446679999999 899 9999876 334 677777766543 22 333 344321
Q ss_pred HHHHHHHhCCCeeeeCCCC--------CcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 61 QARQLILKNNMVLGDLETH--------PDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 61 ~ia~~l~~~~i~v~~l~~~--------~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
.+|.+|.+.|+++..+-+. ..+|++|+|||.|-.+|.+..--|...+- -+.-+...-+|++++.+||..+.
T Consensus 228 ltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lA-l~Ak~~~vPfyV~ap~~k~d~~~ 306 (383)
T 2a0u_A 228 LTVYECVQEDIPCTLICDGAASSLMLNRKIDAVVVGADRICQNGDTANKIGTYNLA-VSAKFHGVKLYVAAPTTTLDVKT 306 (383)
T ss_dssp THHHHHHHTTCCEEEECGGGHHHHHHHSCCCEEEECCSEECTTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGBCTTC
T ss_pred HHHHHHHHcCCCEEEEehhHHHHHhhcCCCCEEEECccEEecCCCEeecccHHHHH-HHHHHcCCCEEEeCCcceecCcC
Confidence 2577889999987765321 24999999999999998886544443332 23345567899999999998876
Q ss_pred CCCcCCcccEEEcc
Q psy481 133 GDRYKKGIPIEVSY 146 (166)
Q Consensus 133 ~~~~~~~~pvev~p 146 (166)
... ..+|+|--+
T Consensus 307 ~~g--~~i~iEer~ 318 (383)
T 2a0u_A 307 ASG--NHVEIEERE 318 (383)
T ss_dssp CSG--GGSCCCBCC
T ss_pred CCc--cccccccCC
Confidence 432 357776543
No 25
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}
Probab=97.81 E-value=0.00011 Score=59.42 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=73.0
Q ss_pred HHHHHhcCCCCCCEEEECc---ChhHHHHHHHHHHHHhhcCCCeEEEcChHHH----HHHHHhCCC--------------
Q psy481 13 AYQAVDDNVLNNTAVGIGS---GSTVVYAVDRLAERIKAEKLKIVCVPTSFQA----RQLILKNNM-------------- 71 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~lds---GsT~~~la~~L~~~~~~~~~~ltvVTnS~~i----a~~l~~~~i-------------- 71 (166)
|++|++ +|+|||+|+++. ..+-..++++|.++ +.+++|+++||.-. ...|...|.
T Consensus 11 a~eAv~-~IkdG~tV~~gGf~~~g~P~~li~aL~~~---~~kdLtli~~~~g~~~~g~~~L~~~G~v~r~i~s~~g~~~~ 86 (235)
T 3rrl_A 11 LDKALS-ALKDGDTILVGGFGLCGIPEYAIDYIYKK---GIKDLIVVSNNCGVDDFGLGILLEKKQIKKIIASYVGENKI 86 (235)
T ss_dssp THHHHT-TCCTTCEEEECCBTTBTCCHHHHHHHHHH---TCCSEEEECSCCCCSSSGGGGGGTTTCEEEEEESCCCSCHH
T ss_pred HHHHHh-hCCCCCEEEECCcCccCCHHHHHHHHHhc---CCCcEEEEEcCCCCCCcCHHHHHhCCCeeEEEeccccCCHH
Confidence 678898 899999999996 23457788888765 44699999996311 122333331
Q ss_pred ----------eeeeCC---------------------------------------------CCCcccEEEEccccccCCC
Q psy481 72 ----------VLGDLE---------------------------------------------THPDLSCVIDGADEVDENL 96 (166)
Q Consensus 72 ----------~v~~l~---------------------------------------------~~~~~D~af~gad~vd~~~ 96 (166)
++..+. ...++|+||+.+...|..+
T Consensus 87 ~~~~~~~G~ie~~~~pqg~la~~~rag~~G~P~~~t~~glgT~v~~gk~~~~~~G~~~l~~~a~~~DvAli~a~~aD~~G 166 (235)
T 3rrl_A 87 FESQMLNGEIEVVLTPQGTLAENLHAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLG 166 (235)
T ss_dssp HHHHHHHTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTCCEEEETTEEEEEEECCCEEEEEEECSEEETTC
T ss_pred HHHHHHcCCeEEEECCHHHHHHHHHHHhCCCCEEEeccccCcccccCceEEeeCCEEEEEEcCCCCeEEEEEeeecCCCc
Confidence 111100 0137999999999999999
Q ss_pred ccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 97 VLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 97 ~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
++........+ ...++..|+++|+-++.
T Consensus 167 N~~~~~~~~~~-~~~~a~aA~~vIveve~ 194 (235)
T 3rrl_A 167 NLVFRKTARNF-NPLCAMAAKICVAEVEE 194 (235)
T ss_dssp CEECCGGGCTT-HHHHHHTEEEEEEEESE
T ss_pred eEEEecCcccc-cHHHHHhcCEEEEEEee
Confidence 99765543222 24677889988887764
No 26
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2
Probab=97.66 E-value=0.00017 Score=57.37 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=71.6
Q ss_pred HHHHHhcCCCCCCEEEECcC---hhHHHHHHHHHHHHhhcCCCeEEEcChHHHH----HHHHhCCC--eee---------
Q psy481 13 AYQAVDDNVLNNTAVGIGSG---STVVYAVDRLAERIKAEKLKIVCVPTSFQAR----QLILKNNM--VLG--------- 74 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~ldsG---sT~~~la~~L~~~~~~~~~~ltvVTnS~~ia----~~l~~~~i--~v~--------- 74 (166)
|++|++ +|+|||+|++|.. .+-..+.++|.++ +.+++|+++++.-.. ..+...+. +++
T Consensus 8 a~eAv~-~IkdG~tv~~ggf~~~g~P~~l~~aL~~~---~~~dLtl~~~~~g~~~~g~~~l~~~g~v~~~~~s~~~~~~~ 83 (220)
T 1k6d_A 8 LQDATG-FFRDGMTIMVGGFMGIGTPSRLVEALLES---GVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPE 83 (220)
T ss_dssp HHHHGG-GCCTTCEEEECCBTTBTCCHHHHHHHHHH---TCCSEEEECSBCCCTTSTTHHHHHTTCEEEEEESBCTTCHH
T ss_pred HHHHHh-hCCCCCEEEECCccccCCHHHHHHHHHHC---CCCCEEEEEecCCCCccCHHHHhhCCCccEEEEcCCCCCHH
Confidence 678998 8999999999864 3466778888765 346899999864100 12222221 111
Q ss_pred -------------e---------------------------------------------CCCCCcccEEEEccccccCCC
Q psy481 75 -------------D---------------------------------------------LETHPDLSCVIDGADEVDENL 96 (166)
Q Consensus 75 -------------~---------------------------------------------l~~~~~~D~af~gad~vd~~~ 96 (166)
. +....++|+||+-+...|..+
T Consensus 84 ~r~~~~~G~ie~~~~p~g~~~~~~ra~~~g~P~~~t~~g~gt~v~~g~~~~~~~g~~~l~~~~l~~DVAli~a~~aD~~G 163 (220)
T 1k6d_A 84 TGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLG 163 (220)
T ss_dssp HHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEEECCCCEEEEEEEEEEEETTC
T ss_pred HHHHHHCCCeEEEecChHHHHHHHHHHhCCCCeEEeecccCceeccCceeEeeCCeEEEEecCCCCcEEEEEeecCCCCc
Confidence 0 000126999999999999999
Q ss_pred ccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 97 VLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 97 ~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
++..+.....+ ...+++.|+++|+-++.
T Consensus 164 n~~~~~~~~~~-~~~~a~aA~~VIveVn~ 191 (220)
T 1k6d_A 164 NLTYQLSARNF-NPLIALAADITLVEPDE 191 (220)
T ss_dssp CEECCHHHHTT-HHHHHHHEEEEEEEEEE
T ss_pred eEEEecCCccc-cHHHHHhcCEEEEEEcc
Confidence 98765433222 34578899988887764
No 27
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}
Probab=97.54 E-value=0.00024 Score=57.31 Aligned_cols=108 Identities=13% Similarity=-0.000 Sum_probs=72.5
Q ss_pred HHHHHhcCCCCCCEEEECcC---hhHHHHHHHHHHHHhhcCCCeEEEcChHHHH----HHHHhCCC--eeee--------
Q psy481 13 AYQAVDDNVLNNTAVGIGSG---STVVYAVDRLAERIKAEKLKIVCVPTSFQAR----QLILKNNM--VLGD-------- 75 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~ldsG---sT~~~la~~L~~~~~~~~~~ltvVTnS~~ia----~~l~~~~i--~v~~-------- 75 (166)
|++|++ +|+|||+|++|.- .+-..+.++|.++ +.+++|+++++.... ..+...+. +++.
T Consensus 11 a~eAv~-~IkdG~tV~~ggf~~~g~P~~li~aL~~~---~~~dLtl~~~~~~~~~~gl~~l~~~g~v~~~~~s~~g~~~~ 86 (241)
T 3cdk_A 11 SKEAAK-LIHDGDTLIAGGFGLCGIPEQLILSIRDQ---GVKDLTVVSNNCGVDDWGLGLLLANKQIKKMIASYVGENKI 86 (241)
T ss_dssp HHHHHT-TCCTTCEEEECCBTTBTCCHHHHHHHHHH---TCCSEEEEESSCCCSSSTTHHHHHTTCEEEEEESBCCSCHH
T ss_pred HHHHHh-hCCCCCEEEECCcCccCcHHHHHHHHHHc---CCCCEEEEEecCCCCCccHHHHhhCCCcCeEEEeccCCCHH
Confidence 778998 8999999999873 3567888888765 346899999853111 12222221 1110
Q ss_pred ----------------------------------C-----C--------------------CCCcccEEEEccccccCCC
Q psy481 76 ----------------------------------L-----E--------------------THPDLSCVIDGADEVDENL 96 (166)
Q Consensus 76 ----------------------------------l-----~--------------------~~~~~D~af~gad~vd~~~ 96 (166)
+ + ...++|+||+.+...|..+
T Consensus 87 ~r~~~~~G~ie~~~~p~g~l~~~~ra~~~g~P~~~t~~g~gT~v~~g~~~~~~~g~~~l~~~~l~~DVAlI~a~~aD~~G 166 (241)
T 3cdk_A 87 FERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTMG 166 (241)
T ss_dssp HHHHHTTTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTSCEEEETTEEEEEEECCCEEEEEEEEEEEETTC
T ss_pred HHHHHHCCCceEEEcCHHHHHHHHHHHhcCCCeEEEecccCceeccCceeeccCCceEEEccCCCCcEEEEEeccCCCCC
Confidence 0 0 0126899999999999999
Q ss_pred ccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 97 VLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 97 ~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
++..+.....+ ...+++.|+++|+-++.
T Consensus 167 n~~~~~~~~~~-~~~~a~aAk~VIveVn~ 194 (241)
T 3cdk_A 167 NLIFRKTARNF-NPIAAMAGKITIAEAEE 194 (241)
T ss_dssp CEECCGGGCTT-HHHHHHHEEEEEEEEEE
T ss_pred eEEEecCchhh-HHHHHHhCCEEEEEEeC
Confidence 98766443222 25678899988887765
No 28
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=97.52 E-value=3.1e-05 Score=61.47 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH---H--------HHhCCCe-eee-
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ---L--------ILKNNMV-LGD- 75 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~---~--------l~~~~i~-v~~- 75 (166)
|+.||+.|+. .++||++++||.| .-..++.++. . .++++.+.+-.+.. - +.+.|-. +..
T Consensus 2 r~~Ia~raA~-el~dG~~vnlGIG-iP~~va~~~~-~-----~~v~l~~E~G~~g~~p~p~~~~~d~~~in~G~~~~t~~ 73 (207)
T 3rrl_B 2 REAIIKRAAK-ELKEGMYVNLGIG-LPTLVANEVS-G-----MNIVFQSENGLLGIGAYPLEGSVDADLINAGKETITVV 73 (207)
T ss_dssp HHHHHHHHHT-TCCTTCEEEECTT-GGGGGGGGGS-S-----SCCEEEETTTEEEECCCCCTTCCCTTCBCTTSBBCCEE
T ss_pred hHHHHHHHHH-hCCCCCEEEECCC-hHHHHHHhcc-C-----CcEEEEeccceecCcCCCCccccCHhHeecCCceeeec
Confidence 7889999998 8999999999999 4556777765 2 36777777553321 0 0011111 000
Q ss_pred -----CC--------CCCcccEEEEccccccCCCcc---------ccCCcchHHHHHHHHhhCCceEEEEcCCC
Q psy481 76 -----LE--------THPDLSCVIDGADEVDENLVL---------IKGGGGCLTQEKIVASCTPKLVIIADHTK 127 (166)
Q Consensus 76 -----l~--------~~~~~D~af~gad~vd~~~~~---------~~~~~~a~~~ek~i~~~A~~~illaD~sK 127 (166)
+. +-.++|++|+|+-+||..+++ ++|.|++. -+.+.|+++|++.+|++
T Consensus 74 ~~~~~~~~~~~F~~~~gG~~Dvailga~qVD~~Gnvn~~~~~~~~~~G~GGa~----d~~~~A~~vi~~~~~t~ 143 (207)
T 3rrl_B 74 PGASFFNSADSFAMIRGGHIDLAILGGMEVSQNGDLANWMIPKKLIKGMGGAM----DLVHGAKKVIVIMEHCN 143 (207)
T ss_dssp EEEEECCHHHHHHHHHTTCCSEEEECCSEEETTSCEECSEETTTEECCCTTHH----HHHHHSSEEEEECCSBC
T ss_pred CCceeeCCHHHHHHHhCCCeeEEEECHHHHCcCCCccccccCCeeecCcccHH----HHHhCCCEEEEEEeeec
Confidence 11 114799999999999987644 22333322 24468899999999985
No 29
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.39 E-value=0.00046 Score=60.05 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=78.2
Q ss_pred HHHHHHHHHH-hcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChHHHHH-----HHHhCCCeee------
Q psy481 8 AKRIAAYQAV-DDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSFQARQ-----LILKNNMVLG------ 74 (166)
Q Consensus 8 ~K~~IA~~A~-~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~~ia~-----~l~~~~i~v~------ 74 (166)
.|..-|++|+ + +|+|||+|+++.+. +-..++++|.++.. +.+++|++++...... .+ ...+++.
T Consensus 9 ~K~~sa~eAv~~-~IkdG~tV~~ggf~g~P~~Li~AL~~~~~-~~~dLtli~~~~~~~~~~~~~~l-~~~i~~~~~~~g~ 85 (439)
T 3d3u_A 9 QRVCSADEAVVD-SLKPGTKVVFGHAAAAPVRFSQAMYRQRE-KLENITVFHMLYFGDAPHLAPEM-RSHVHPTLNFLEG 85 (439)
T ss_dssp HHBCCHHHHHHH-HCCTTCEEEECCBTTCCHHHHHHHHHTTT-TCCSEEEECSCBSSCCTTSSGGG-TTTEEEEC-----
T ss_pred cCCCcHHHHHHh-hCCCcCEEEECcccChHHHHHHHHHHhhC-CCCCEEEEEecCCCcchhccHHh-CCcEEEEECCCCh
Confidence 4555688999 8 89999999999885 56788888876521 2358999998422110 11 1111111
Q ss_pred --------------e----------CCCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCC
Q psy481 75 --------------D----------LETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127 (166)
Q Consensus 75 --------------~----------l~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sK 127 (166)
. ......+|+||+.+...|+++++..+. ...+ ...++++|+.+|+-+++..
T Consensus 86 ~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~D~~Gnls~g~-s~~~-~~~~~~aA~~VIveVn~~v 160 (439)
T 3d3u_A 86 NSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGV-SCDY-TKAAAECAPVVVAEVNKQM 160 (439)
T ss_dssp ---------------CCGGGHHHHHTTSSSCCSEEEEEEECCCTTSEEECTT-BCBT-HHHHHHHCSEEEEEEESSS
T ss_pred HHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecCCCCceEEEec-cccc-hHHHHhhCCeEEEEECCCC
Confidence 0 012247999999999999999886643 2222 2577789999999999987
No 30
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2
Probab=96.86 E-value=0.0062 Score=50.85 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=33.0
Q ss_pred cccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 81 DLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 81 ~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
++|+||+-+...|..+++...+. ... ...+++.|+++|+-++.
T Consensus 171 ~~DVAlI~a~~aD~~GN~~~~~~-~~~-~~~~a~aAk~VIveVe~ 213 (317)
T 1poi_A 171 QVDVAIIHAQQASPDGTVRIWGG-KFQ-DVDIAEAAKYTIVTCEE 213 (317)
T ss_dssp CCSEEEEEEEEECTTCCEECCSC-CTT-HHHHHHHSSEEEEEEEE
T ss_pred CCcEEEEEeccCCCCceEEEecC-CCc-hHHHHhhCCEEEEEEcC
Confidence 68999999999999999866433 222 35777899988888765
No 31
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=96.83 E-value=0.0045 Score=54.83 Aligned_cols=115 Identities=14% Similarity=0.113 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcCh---hHHHHHHHHHHHHhhcCCCeEEEcC-hHH--HHHHHHhCC-Ceeee-C----
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGS---TVVYAVDRLAERIKAEKLKIVCVPT-SFQ--ARQLILKNN-MVLGD-L---- 76 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGs---T~~~la~~L~~~~~~~~~~ltvVTn-S~~--ia~~l~~~~-i~v~~-l---- 76 (166)
|..=|++|++ +|+|||+|+++..+ +-..+.++|.++-..+.++++++++ |.- ....+...+ ++... .
T Consensus 14 Kv~saeEAv~-~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~dl~Ltl~~~~~~g~~~~~~l~~~g~v~~~~~~~~~~ 92 (497)
T 2g39_A 14 KVMSAAEAAD-LIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLGNDLDKQLTEAGVLARRMPFQVDS 92 (497)
T ss_dssp GBCCHHHHHT-TCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHSCCCEEEECSSCCCTTHHHHHHHTTCEEEEESCCCCH
T ss_pred ccCcHHHHHh-hCCCCCEEEECCCCCCCCHHHHHHHHHHhhhcCCceEEEEecccccccchHHHhcCCceEEEEeeCCCH
Confidence 3334888999 89999999998642 3446777776552212235899987 321 111333222 32111 0
Q ss_pred --------------------------CCCC-cccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 77 --------------------------ETHP-DLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 77 --------------------------~~~~-~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
.... .+|+||+.+...|+++++..+...... ..++++|+++|+-++..
T Consensus 93 ~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIvEVn~~ 167 (497)
T 2g39_A 93 TLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAITEQGHIVPTTSVGNS--ASFAIFAKQVIVEINLA 167 (497)
T ss_dssp HHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEECTTSCEECCSBCBTH--HHHHHHSSEEEEEEETT
T ss_pred HHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcccH--HHHHHhCCeEEEEEcCC
Confidence 1223 589999999999999988665433332 56778999999999874
No 32
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=96.72 E-value=0.018 Score=50.55 Aligned_cols=112 Identities=10% Similarity=0.095 Sum_probs=72.0
Q ss_pred HHHHHHhcCCCCCCEEEECcChhH-HHHHHHHHHHHhh-cCCCeEEEcCh-HH--HHHHHHh---CCCeee---------
Q psy481 12 AAYQAVDDNVLNNTAVGIGSGSTV-VYAVDRLAERIKA-EKLKIVCVPTS-FQ--ARQLILK---NNMVLG--------- 74 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~ldsGsT~-~~la~~L~~~~~~-~~~~ltvVTnS-~~--ia~~l~~---~~i~v~--------- 74 (166)
=|++|++ +|+|||+|+++.+.-. ..+.++|.++... +..++++++.- .. ....+.. ..++..
T Consensus 28 saeEAv~-lIkdGdtV~~gG~~g~P~~L~~AL~~r~~~g~~~~ltl~~~~~~G~~~~~~~~~~~~~~~~~~~~f~~~~~R 106 (455)
T 3qli_A 28 TPEEAVS-SIASGSHLSMGMFAAEPPALLKALADRATRGDIGDLRVYYFETAKIAGDTILRYELNNRIKPYSMFVTAVER 106 (455)
T ss_dssp CHHHHTT-TCCTTCEEEECSGGGSCHHHHHHHHHHHHTTCCCSEEEEESSCCHHHHHTTTCGGGTTTEEEEESSCCHHHH
T ss_pred CHHHHHH-hCCCCCEEEECCcccCHHHHHHHHHHHHhhCCCcceEEEEecccccchhhhhChhhcCcEEEeeCcCChhHH
Confidence 3889999 9999999999977433 6688888765321 23589988632 21 1111111 111111
Q ss_pred ------------------eC---------CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 75 ------------------DL---------ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 75 ------------------~l---------~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
.. .....+|++|+.+...|.++++..+..... ...+++.|+++|+-++..
T Consensus 107 ~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~~~~iDVAli~vs~~D~~G~~s~g~s~~~--~~~~a~~Ak~VI~EVN~~ 183 (455)
T 3qli_A 107 ALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEEIGIDTFMHTVSPMDCHGYFSLGVGNDY--SSRIARSARRFIVEVNRY 183 (455)
T ss_dssp HHHHHHHHTTTCCCCCCCCCCGGGHHHHHHTTTCCSEEEEEECCCCTTSEEECTTBCBT--HHHHHHHSSEEEEEECTT
T ss_pred HHHhCCCcccCcCcEEEECccHHHHHHHHHhcCCCCEEEEEEecCCCCceEEEccCCCc--hHHHHhhcCEEEEEecCC
Confidence 00 112368999999999999988866543332 256778999999988764
No 33
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=96.70 E-value=0.015 Score=51.52 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCCCCCEEEECc--Ch-hHHHHHHHHHHHHh----hc-CCCeEEEcChH---HHHHHHHhCC-C-----
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGS--GS-TVVYAVDRLAERIK----AE-KLKIVCVPTSF---QARQLILKNN-M----- 71 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~lds--Gs-T~~~la~~L~~~~~----~~-~~~ltvVTnS~---~ia~~l~~~~-i----- 71 (166)
|..=|++|++ +|+|||+|+++. |. +-..+.++|.+|.. .+ ...++++|... .....+.+.+ +
T Consensus 13 KlvSaeEAv~-~IkdGd~V~~~Gf~~~G~P~~L~~ALa~R~~~~~~~g~~~~i~l~~~~~~~~~~~~~l~~~g~i~~~~~ 91 (514)
T 4eu9_A 13 KVCPAETASE-LIKHGDVVGTSGFTGAGYPKEVPKALAQRMEAAHDRGEKYQISLITGASTGPQLDGELAKANGVYFRSP 91 (514)
T ss_dssp GBCCHHHHHT-TCCTTCEEEECCBTTBSCCCHHHHHHHHHHHHHHHTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEES
T ss_pred CCCcHHHHHH-hCCCCCEEEECCCCCCcCHHHHHHHHHHHHHHhhcCCcceeEEEEEecCcCcccccccccCCCEEEEEe
Confidence 3334899999 899999999973 21 22344555543311 11 23577776421 1112222222 1
Q ss_pred ----------------eeeeC-----------CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEc
Q psy481 72 ----------------VLGDL-----------ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124 (166)
Q Consensus 72 ----------------~v~~l-----------~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD 124 (166)
..+.. .....+|+||+.+...|+++++..+...... +.++++|+++|+-++
T Consensus 92 ~~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~De~Gnis~g~sv~~~--~~~~~~A~~VIvevn 169 (514)
T 4eu9_A 92 FNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAITEDGGIVPTSSVGNS--QTFLNLAEKVIIEVN 169 (514)
T ss_dssp CCCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEECTTCCEEECSBCBTH--HHHHHHCSEEEEEEE
T ss_pred cCCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcCCCCceEEecCCcchH--HHHHHhCCeEEEEEe
Confidence 11111 1223799999999999999998765443333 466789999999998
Q ss_pred CC
Q psy481 125 HT 126 (166)
Q Consensus 125 ~s 126 (166)
..
T Consensus 170 ~~ 171 (514)
T 4eu9_A 170 EW 171 (514)
T ss_dssp TT
T ss_pred cC
Confidence 74
No 34
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=96.67 E-value=0.015 Score=50.53 Aligned_cols=108 Identities=12% Similarity=0.005 Sum_probs=70.6
Q ss_pred HHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH-H---HHH-HHHhCCCeeeeC----------
Q psy481 13 AYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF-Q---ARQ-LILKNNMVLGDL---------- 76 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~-~---ia~-~l~~~~i~v~~l---------- 76 (166)
|++|++ +|+|||+|+++.+. +-..+.++|.++-+ +-+++|+++++. . ... .+ ...+....+
T Consensus 9 aeeAv~-~IkdG~tI~~ggf~g~P~~Li~AL~~r~~-~~kdLtl~~~~s~g~~~~~~~~l-~~~i~~~~~~~~~~lr~~i 85 (436)
T 2oas_A 9 ALEAVS-LIRSGETLWTHSMGATPKVLLDALAKHAL-TLDNITLLQLHTEGAESLSHPSL-LGHLRHRCFFGGVPTRPLL 85 (436)
T ss_dssp HHHHHT-TCCTTCEEEECCBTTCCHHHHHHHHHHGG-GCCSEEEEESSBSSCGGGGSGGG-TTTEEEEESSCCTTTHHHH
T ss_pred HHHHHh-hCCCCCEEEECCccCcHHHHHHHHHHhhc-cCCCEEEEEecccCChhhhHHHh-cCcEEEeecCCCHHHHHHH
Confidence 778998 89999999998661 24567778876521 125899999642 1 111 11 111221111
Q ss_pred --------------------CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 77 --------------------ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 77 --------------------~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
.....+|+||+.+...|+.+++..+..... ...+++.|+.+|+-++.
T Consensus 86 ~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~aD~~Gn~s~~~s~~~--~~~~a~aA~~VIveVn~ 152 (436)
T 2oas_A 86 QSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPPDKHGMCSLGISVEA--TLAACQVAGKIIAHINP 152 (436)
T ss_dssp HTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTCEEECTTBCTT--HHHHHHHCSEEEEEECT
T ss_pred HcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccCCCCceEEEecCcCc--HHHHHHhcCeEEEEEcC
Confidence 122479999999999999998866533322 25677899999998887
No 35
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=96.53 E-value=0.0076 Score=53.49 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=70.9
Q ss_pred HHHHHhcCCCCCCEEEECcCh---hHHHHHHHHHHHHhh----c-CCCeEEEcC-hHH--HHHHHHh-CCCeeee-C---
Q psy481 13 AYQAVDDNVLNNTAVGIGSGS---TVVYAVDRLAERIKA----E-KLKIVCVPT-SFQ--ARQLILK-NNMVLGD-L--- 76 (166)
Q Consensus 13 A~~A~~~~I~dg~vI~ldsGs---T~~~la~~L~~~~~~----~-~~~ltvVTn-S~~--ia~~l~~-~~i~v~~-l--- 76 (166)
|++|++ +|+|||+|+++..+ +-..+.++|.++-.+ + ..+++++++ |.. ....+.. ..++... .
T Consensus 8 aeEAv~-~IkdGdtV~~gGf~~~G~P~~Li~AL~~r~~~~~~~g~~~~Ltl~~~~s~g~~~~~~l~~~g~v~~~~~~~~~ 86 (506)
T 2nvv_A 8 AEEAAE-FVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSN 86 (506)
T ss_dssp HHHHHT-TCCTTCEEEECCSSSTTCCCSHHHHHHHHHHHHHTTTCCCCEEEECSSCCCTTTHHHHHHTTCEEEEESCCCC
T ss_pred HHHHHh-hCCCCCEEEECCCCCCCCHHHHHHHHHHhHHhhccccCCceEEEEEecCCCcchhHHhccCCceEEEeeeCCC
Confidence 778998 89999999998642 334566666544221 1 347999995 221 1112322 2232211 0
Q ss_pred ---------------------------CCCC-cccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 77 ---------------------------ETHP-DLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 77 ---------------------------~~~~-~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
.... .+|+||+.+...|+++++..+...... ..++++|+++|+-++..
T Consensus 87 ~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~aDe~Gnls~~~s~~~~--~~~a~aA~~VIveVn~~ 162 (506)
T 2nvv_A 87 KDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGIL--PTICRLADRIIVELNDK 162 (506)
T ss_dssp HHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEECTTSEEECCSBCBTH--HHHHHHCSEEEEEEETT
T ss_pred HHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEecccCCCceEEEeCCcCcH--HHHHHhCCcEEEEECCC
Confidence 1223 599999999999999988665433332 56778999999998874
No 36
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=96.35 E-value=0.025 Score=50.29 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=70.4
Q ss_pred HHHHHhcC--CCCCCEEEECcCh-----hHHHHHHHHHHHHhhcCCCeEEEcChHHHH--H--HHHhCCC--eeee----
Q psy481 13 AYQAVDDN--VLNNTAVGIGSGS-----TVVYAVDRLAERIKAEKLKIVCVPTSFQAR--Q--LILKNNM--VLGD---- 75 (166)
Q Consensus 13 A~~A~~~~--I~dg~vI~ldsGs-----T~~~la~~L~~~~~~~~~~ltvVTnS~~ia--~--~l~~~~i--~v~~---- 75 (166)
|++|++ . |+|||+|+++..+ -+..+.++|.++ +.+++|++++|.-.. . .+...+. +++.
T Consensus 52 aeEAv~-~~~IkdG~tV~~gGf~g~P~~l~~~Li~AL~~r---~~kdLtli~~s~g~~~~~l~~~~~~g~v~r~~~~~~g 127 (519)
T 2hj0_A 52 IHEAIE-KTRLKDGMTISFHHHFREGDYVMNMVLDEIAKM---GIKDISIAPSSIANVHEPLIDHIKNGVVTNITSSGLR 127 (519)
T ss_dssp HHHHHH-HTTCCTTCEEEECCTTGGGBCHHHHHHHHHHHT---TCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCH
T ss_pred HHHHHh-cCCCCCCCEEEECCccCCchHHHHHHHHHHHhc---CCCCeEEEeecCCCcchhHHhHhhcCcEEEEEecCCC
Confidence 778888 8 9999999999763 122445556553 335899999865321 1 1222222 1211
Q ss_pred -----------------CC-----------CCCcccEEEEccccccCCCcccc--CCc--chHHHHHHHHhhCCceEEEE
Q psy481 76 -----------------LE-----------THPDLSCVIDGADEVDENLVLIK--GGG--GCLTQEKIVASCTPKLVIIA 123 (166)
Q Consensus 76 -----------------l~-----------~~~~~D~af~gad~vd~~~~~~~--~~~--~a~~~ek~i~~~A~~~illa 123 (166)
+. ....+|+||+.+...|+.+++.. +.. ++.-.-..++++|+.+|+-+
T Consensus 128 ~~~r~~i~~G~~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~aD~~Gnls~~~g~s~~~s~~~~~~~a~~A~~VIaEV 207 (519)
T 2hj0_A 128 DKVGAAISEGIMENPVIIRSHGGRARAIATDDIHIDVAFLGAPSSDAYGNANGTRGKTTCGSLGYAMIDAKYADQVVIVT 207 (519)
T ss_dssp HHHHHHHHTTCCSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEECTTSCEESSSSSSCCSCCHHHHHHHHHCSEEEEEE
T ss_pred cHHHHHHHCCCCCCCceeeccCCHHHHHhcCCCCCcEEEEEecccCCCCcEEEecCccccccchhhHHHHhhCCEEEEEe
Confidence 11 12379999999999999998863 322 11222367888999999988
Q ss_pred cCC
Q psy481 124 DHT 126 (166)
Q Consensus 124 D~s 126 (166)
+..
T Consensus 208 n~~ 210 (519)
T 2hj0_A 208 DTL 210 (519)
T ss_dssp SSB
T ss_pred CCC
Confidence 763
No 37
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=96.22 E-value=0.013 Score=51.22 Aligned_cols=113 Identities=8% Similarity=0.015 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcC-hHHH---H-HHHHhCCCeee--------
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPT-SFQA---R-QLILKNNMVLG-------- 74 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTn-S~~i---a-~~l~~~~i~v~-------- 74 (166)
|..=|++|++ +|++||+|+++.+.- -..+.++|.++.. +-.++++.+. |+.- . ..+.+ .++..
T Consensus 10 Kl~saeeA~~-~ik~G~~v~~~~~~~~p~~l~~al~~~~~-~l~~v~l~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~ 86 (448)
T 3gk7_A 10 RTCTADEAVK-SIKSGDRVLFAHCVAEPPVLVEAMVANAA-AYKNVTVSHMVTLGKGEYSKPEYKE-NFTFEGWFTSPST 86 (448)
T ss_dssp TBCCHHHHGG-GCCTTCEEEECSGGGCCHHHHHHHHHTGG-GCSSEEEEESSCSSCCGGGSGGGTT-TEEEEESSCCTTT
T ss_pred cCCCHHHHHH-hCCCcCEEEECCCCCCHHHHHHHHHHHHH-hhcCeEEEEeeccCCccccChHHhC-cEEEecCcCCHHH
Confidence 3344889999 999999999997653 3566777776532 2247888876 3321 0 01111 11111
Q ss_pred ------------eC----------CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 75 ------------DL----------ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 75 ------------~l----------~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
.. .....+|++|+.+...|+++++..+..... -..+++.|+++|+-++..
T Consensus 87 r~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~~--~~~~a~~A~~VI~eVn~~ 158 (448)
T 3gk7_A 87 RGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDY--TMQAIKSAKIVLAEVNDQ 158 (448)
T ss_dssp HHHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCCCTTSEEECCSBCBT--HHHHHHHCSEEEEEEETT
T ss_pred HhHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecCCCCCcEEecCCcCh--HHHHHHhCCeEEEEeecc
Confidence 11 112379999999999999998866543222 257778999999988864
No 38
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0
Probab=96.19 E-value=0.0027 Score=51.64 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHh---cCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc------------ChHHHHHHH-HhC
Q psy481 6 EEAKRIAAYQAVD---DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP------------TSFQARQLI-LKN 69 (166)
Q Consensus 6 ~~~K~~IA~~A~~---~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT------------nS~~ia~~l-~~~ 69 (166)
.+.++.+|+.|++ +++++|++|+++.|+|+..++++|... ...++++|+ ++..++..+ ...
T Consensus 35 ~~~~~~lg~aaA~~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~~---~~~~~~~V~l~GG~~~~~~~~~~~~i~~~lA~~~ 111 (267)
T 3kv1_A 35 NEQRKQVAALVSSYLNNNLQEGMAVAVGQGQNVAAVADHAGIV---TQRNARFVSAIGGTHRSGDIINADHICRRLAKKY 111 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHCCCCC---CCCCCEEEESBCBCC----CCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHhcccc---CCCCCEEEeCCCCCCCCccccCHHHHHHHHHHHh
Confidence 3457788888876 136899999999999999999998642 113555543 334455544 344
Q ss_pred CCeeeeCC-------------------------CCCcccEEEEccccccCCC
Q psy481 70 NMVLGDLE-------------------------THPDLSCVIDGADEVDENL 96 (166)
Q Consensus 70 ~i~v~~l~-------------------------~~~~~D~af~gad~vd~~~ 96 (166)
+.+...+. ...+.|++|.|.....++.
T Consensus 112 ~~~~~~l~~P~~~~~~~~~~~l~~~~~i~~vl~~~~~aDiai~GIG~~~~~s 163 (267)
T 3kv1_A 112 GGSSETLYAPAYVNDPSLRSAFMEHATIKETLSQARKAEFALVGIGDMDENS 163 (267)
T ss_dssp TCEEECCCSBSBCSSHHHHHHHHTSHHHHHHHHHHHTCSEEEEEEEEHHHHT
T ss_pred CCeEEEEecCcccCCHHHHHHHHhChHHHHHHHHHHhCCEEEEeCCCCCCcc
Confidence 44332220 0127999999999887543
No 39
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=96.19 E-value=0.017 Score=51.23 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=71.7
Q ss_pred HHHHHhcC--CCCCCEEEECcCh-hHHHHHHHHHHHHhh-cCCCeEEEcChHHH-----HHHHHhCCC-eeee-------
Q psy481 13 AYQAVDDN--VLNNTAVGIGSGS-TVVYAVDRLAERIKA-EKLKIVCVPTSFQA-----RQLILKNNM-VLGD------- 75 (166)
Q Consensus 13 A~~A~~~~--I~dg~vI~ldsGs-T~~~la~~L~~~~~~-~~~~ltvVTnS~~i-----a~~l~~~~i-~v~~------- 75 (166)
|++|++ . |+|||+|+++.+. +-..++++|.++... +.+++|++++|..- +..+....+ +++.
T Consensus 49 aeEAv~-~~~IkdG~tV~~gg~~G~P~~Li~AL~~r~~~~g~kdLtli~~s~g~~~~~l~~~i~~g~v~r~~~~~~g~~~ 127 (509)
T 1xr4_A 49 LEEAIR-RSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWPLIEHIKNGVVRQIYTSGLRGKL 127 (509)
T ss_dssp HHHHHH-HTTCCTTCEEEECCTTGGGCCHHHHHHHHHHHTTCCSEEEEESCCCGGGTTHHHHHHTTSEEEEEESBCCHHH
T ss_pred HHHHhc-CCCCCCcCEEEECCccCCHHHHHHHHHHHHHhcCCcceEEEecCCcCcchhHHHHhhcCceEEEEEccCCHHH
Confidence 888998 7 9999999999764 344566666654332 33589999876532 222221111 1111
Q ss_pred ---------------C---------C-CCCcccEEEEccccccCCCcccc--CC---cchHHHHHHHHhhCCceEEEEcC
Q psy481 76 ---------------L---------E-THPDLSCVIDGADEVDENLVLIK--GG---GGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 76 ---------------l---------~-~~~~~D~af~gad~vd~~~~~~~--~~---~~a~~~ek~i~~~A~~~illaD~ 125 (166)
. . ....+|++|+.+...|+.+++.. +. ....+ .+.++++|+.+|+-++.
T Consensus 128 r~~i~~G~~~~P~~~s~~~g~p~ll~~~~l~iDVAlI~as~aD~~Gnls~~~g~~~~~s~~~-~~a~a~~A~~VIaEVn~ 206 (509)
T 1xr4_A 128 GEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAFLGVPCCDEFGNANGFSGKSRCGSLGY-AQVDAQYAKCVVLLTEE 206 (509)
T ss_dssp HHHHHHTCCSSCEEECCHHHHHHHHHTTSSCCSEEEEEESEEETTCCEESSSSSSCCCCCTT-HHHHHHHCSEEEEEESC
T ss_pred HHHHHcCCCcCCeeEeccCCHHHHHhcCCCCceEEEEEeccCCCCceEEEeCCCCcccchHH-HHHHHhhCCEEEEEeCC
Confidence 1 0 22379999999999999998853 31 12222 25777899999998876
Q ss_pred C
Q psy481 126 T 126 (166)
Q Consensus 126 s 126 (166)
.
T Consensus 207 ~ 207 (509)
T 1xr4_A 207 W 207 (509)
T ss_dssp E
T ss_pred C
Confidence 3
No 40
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=96.11 E-value=0.0065 Score=47.43 Aligned_cols=61 Identities=18% Similarity=0.120 Sum_probs=43.9
Q ss_pred ccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCCCcccccCCCcCCcccEEEc
Q psy481 82 LSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEVS 145 (166)
Q Consensus 82 ~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l~~~~~~~~pvev~ 145 (166)
+|++|+|||.|-.+|++..--|...+- -+..+....+|++++.+||..+.... ..+|+|--
T Consensus 52 Vd~VivGAd~v~~nG~v~nkiGT~~~A-l~Ak~~~vPf~V~a~~~k~~~~~~~g--~~i~iE~r 112 (191)
T 1w2w_B 52 IKAAFVGADRIVRNGDTANKIGTLQLA-VICKQFGIKFFVVAPKTTIDNVTETG--DDIIVEER 112 (191)
T ss_dssp EEEEEECCSEECTTSCEEEETTHHHHH-HHHHHHTCEEEEECCGGGBCSSCCSG--GGCCCCBC
T ss_pred CCEEEECccEEecCCCEEecccHHHHH-HHHHHcCCCEEEecccceeeeccCCc--ceeecccC
Confidence 999999999999998886544443332 23345567999999999998875431 25777653
No 41
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0
Probab=96.03 E-value=0.0038 Score=50.77 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHh---cCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 6 EEAKRIAAYQAVD---DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 6 ~~~K~~IA~~A~~---~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
.+.++.+|+.|++ +++++|++|+|+.|+|+..++++|... ...++++|+
T Consensus 36 ~~~~~~lg~~aA~~L~~~l~~~~viGv~wG~T~~~v~~~l~~~---~~~~~~vV~ 87 (267)
T 3nze_A 36 AETLDRVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTRK---MTHDSIVVQ 87 (267)
T ss_dssp HHHHHHHHHHHHHHHGGGCCSSCEEEECCSHHHHHHHHTCCCC---CCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHhcCcc---CCCCCEEEE
Confidence 3457788888875 136899999999999999999999642 123677664
No 42
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=95.89 E-value=0.039 Score=48.00 Aligned_cols=114 Identities=14% Similarity=0.037 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChHH-----HHHHHHh--------------
Q psy481 9 KRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSFQ-----ARQLILK-------------- 68 (166)
Q Consensus 9 K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~~-----ia~~l~~-------------- 68 (166)
|..=|++|++ +|+|||+|+++.+. +-..+.++|.++.. +..++++++.... ....+.+
T Consensus 14 K~~saeEAv~-~IkdGd~V~~~g~~g~P~~L~~ALa~r~~-~l~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 91 (434)
T 3eh7_A 14 RIVSAEEAVK-HIKNGERVALSHAAGVPQSCVDALVQQAD-LFQNVEIYHMLCLGEGKYMAPEMAPHFRHITNFVGGNSR 91 (434)
T ss_dssp GEECHHHHHT-TCCTTCEEEECCGGGCCHHHHHHHHHSTT-TC--CEEECCBCTTCC-----------------------
T ss_pred cCCcHHHHHH-hCCCcCEEEECCccCCHHHHHHHHHHhHh-hcCCeEEEEeccCCchhhcChhhhCeEEEecCcCCHHHH
Confidence 3334889999 89999999999644 34667788876521 2247888874311 1001110
Q ss_pred ----CC-Ceeee--C--------CCCCcccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEcCC
Q psy481 69 ----NN-MVLGD--L--------ETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 69 ----~~-i~v~~--l--------~~~~~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~s 126 (166)
.| +..+. + ....++|++|+.+...|+++++..+.... + -..++++|+++|+-++..
T Consensus 92 ~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~D~~Gn~s~g~s~~-~-~~~~~~~A~~VI~eVn~~ 162 (434)
T 3eh7_A 92 KAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCD-Y-SKPAAESAHLVIGEINRQ 162 (434)
T ss_dssp ------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCCCTTSEEECTTBCT-T-HHHHHHHCSEEEEEEETT
T ss_pred HHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecCCCCCCEEecCccc-h-HHHHHHhCCeEEEEecCC
Confidence 00 00000 1 11237999999999999999886554322 2 357778999999988864
No 43
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.82 E-value=0.032 Score=49.69 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCCEEEECcC----hhHHHHHHHHHHHHh-h-cCCCeEEEcChH
Q psy481 12 AAYQAVDDNVLNNTAVGIGSG----STVVYAVDRLAERIK-A-EKLKIVCVPTSF 60 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~ldsG----sT~~~la~~L~~~~~-~-~~~~ltvVTnS~ 60 (166)
=|++|++ +|+|||+|++|.- .+-..++++|.++.. . +.+++|+++++.
T Consensus 17 sa~eAv~-~IkdG~tV~~gGf~~~~g~P~~li~aL~~~~~~~~~~~dLtlv~~~~ 70 (531)
T 2ahu_A 17 SAQEAVN-YIPDEATLCVLGAGGGILEATTLITALADKYKQTQTPRNLSIISPTG 70 (531)
T ss_dssp CHHHHHT-TCCTTCEEEECCCBTTTTCCHHHHHHHHHHHHHHCCSCSEEEEESSC
T ss_pred CHHHHHh-hCCCCCEEEECCcccccCcHHHHHHHHHHhHHhcCCCCCeEEEEecc
Confidence 3788998 8999999999862 235677777775421 1 236899998754
No 44
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8
Probab=95.76 E-value=0.0059 Score=49.48 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhcC----CCCCCEEEECcChhHHHHHHHHHH
Q psy481 5 VEEAKRIAAYQAVDDN----VLNNTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~----I~dg~vI~ldsGsT~~~la~~L~~ 44 (166)
..+.++.+|+.|++ | +++|++|+++.|+|+..++++|..
T Consensus 39 ~~~~~~~lg~~aA~-~L~~~l~~~~vIGv~wG~Tl~~v~~~l~~ 81 (266)
T 3efb_A 39 EETQLAMMGLHGAQ-LLDRLLEPGDIVGFSWGRAVSALVENLPQ 81 (266)
T ss_dssp HHHHHHHHHHHHHH-HHHHHCCTTCEEEECCSHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHH-HHHHhCCCCCEEEEcccHHHHHHHHhcCc
Confidence 44556778888776 5 689999999999999999999964
No 45
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=95.30 E-value=0.045 Score=48.25 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH-----------HHHhCCCe-e
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ-----------LILKNNMV-L 73 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~-----------~l~~~~i~-v 73 (166)
.+.++.||+.|+. .|+||+++.||.| .-..++.++.+. .++++.|-+-.+-. .+.+.|-. +
T Consensus 260 ~~~~~~Ia~raA~-el~dG~~vnlGIG-iP~~v~~~~~~~-----~~l~l~~E~G~~g~~p~~~~~~~d~~~in~Gk~~~ 332 (481)
T 3k6m_A 260 DNVRERIIKRAAL-EFEDGMYANLGIG-IPLLASNFISPN-----MTVHLQSENGILGLGPYPLQNEVDADLINAGKETV 332 (481)
T ss_dssp --CHHHHHHHHGG-GCCTTEEEEECTT-HHHHHGGGCCTT-----SCEEEEETTTEEEECCCCCGGGCCTTCBCTTSBBC
T ss_pred CCHHHHHHHHHHH-hcCCCCEEEEccC-HHHHHHhhhccC-----CcEEEEECCcEeCCccCCCCCccCcccccCCCceE
Confidence 3568899999999 8999999999999 455566666432 35665554211100 01111211 1
Q ss_pred e------eCC--------CCCcccEEEEccccccCCCcc---------ccCCcchHHHHHHHHhhC-CceEEEEcCCC
Q psy481 74 G------DLE--------THPDLSCVIDGADEVDENLVL---------IKGGGGCLTQEKIVASCT-PKLVIIADHTK 127 (166)
Q Consensus 74 ~------~l~--------~~~~~D~af~gad~vd~~~~~---------~~~~~~a~~~ek~i~~~A-~~~illaD~sK 127 (166)
. .++ +-.++|++|+|+-+||..+++ +.|.|++.- +.+.| +++|+...|+.
T Consensus 333 t~~~g~~~~~~~~~F~~~~gG~~Dv~ilga~qVD~~Gnvn~~~~pg~~~~G~GG~~D----~~~ga~~k~ii~~~~t~ 406 (481)
T 3k6m_A 333 TVLPGASYFSSDESFAMIRGGHVNLTMLGAMQVSKYGDLANWMIPGKLVKGMGGAMD----LVSSAKTKVVVTMEHSA 406 (481)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCCSEEEECCSEEETTCCEECSCBTTTBCSCCTTHHH----HTCCTTSEEEEECCSBC
T ss_pred eccccceecCCHHHeeeecCCCeEEEEechHhccCCCCccccccCCceeecCCcchh----hhccCCceEEEEEeeEc
Confidence 0 011 113799999999999987644 233334322 34677 69999989874
No 46
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=95.20 E-value=0.11 Score=46.22 Aligned_cols=110 Identities=14% Similarity=0.086 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHH-HH--HhCCCee---eeCC----
Q psy481 8 AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ-LI--LKNNMVL---GDLE---- 77 (166)
Q Consensus 8 ~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~-~l--~~~~i~v---~~l~---- 77 (166)
.+++||+.+++ +|+||+++.+|.| .-..++.+|.+.. ..+++++.|-+--+.. .+ ...+... ..+.
T Consensus 287 ~~~~Ia~~~A~-~i~dG~~v~lGiG-iP~av~~~l~~~~--~~~~l~~~~E~G~~g~~~~~g~~~g~~~~~~~~~~~~~~ 362 (531)
T 2ahu_A 287 QRKLVARRALF-EMRKGAVGNVGVG-IADGIGLVAREEG--CADDFILTVETGPIGGITSQGIAFGANVNTRAILDMTSQ 362 (531)
T ss_dssp HHHHHHHHHHT-TCCTTCEEEECSS-TTTTHHHHHHHHT--CGGGSEEBCTTSEESCBCC-----CCCBSCSEECCHHHH
T ss_pred HHHHHHHHHHH-hccCCCEEEecCc-HHHHHHHHHHhcC--CCCCeEEEEccceecCccCCCccceeEECHHHhcchhhh
Confidence 37899999999 8999999999999 6668888887620 0124544442100000 00 0001100 0000
Q ss_pred ----CCCcccEEEEccccccCCCcc--------ccCCcchHHHHHHHHhhCCceEEEEcC
Q psy481 78 ----THPDLSCVIDGADEVDENLVL--------IKGGGGCLTQEKIVASCTPKLVIIADH 125 (166)
Q Consensus 78 ----~~~~~D~af~gad~vd~~~~~--------~~~~~~a~~~ek~i~~~A~~~illaD~ 125 (166)
...++|++|+|+-+||..+++ +.|.||+. =+.+.|+++|+...|
T Consensus 363 f~~~~~g~vdvailga~eVD~~Gnvn~~~~G~~~~G~GG~~----D~~~gA~~~i~~~~~ 418 (531)
T 2ahu_A 363 FDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFI----DISATSKKIIFCGTL 418 (531)
T ss_dssp HHHHHTTCCSEEEEECSEEETTSCEECSEETTEECBCTTHH----HHHTTCSEEEEECCS
T ss_pred hheecCCCeEEEEeChHHhCCCCcchhhccCCceecCCcch----hhhcCCCeEEEEecc
Confidence 113799999999999987755 33333433 234688999998864
No 47
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8
Probab=94.97 E-value=0.02 Score=46.35 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHHHHh---cCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 8 AKRIAAYQAVD---DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 8 ~K~~IA~~A~~---~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
.++.+++.|++ +.++++++|+|++|+|...++++|... ...++++|.
T Consensus 39 ~~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~---~~~~v~~v~ 88 (266)
T 2gnp_A 39 LSERISQVAAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSK---SVRNVHFYP 88 (266)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHHCCCC---CCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECChHHHHHHHHhcccc---CCCCCEEEE
Confidence 36677777765 136899999999999999999999642 123666653
No 48
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8
Probab=93.84 E-value=0.042 Score=44.34 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=30.3
Q ss_pred HHHHHHHHHHh---cCCCCCCEEEEC-cChhHHHHHHHHHH
Q psy481 8 AKRIAAYQAVD---DNVLNNTAVGIG-SGSTVVYAVDRLAE 44 (166)
Q Consensus 8 ~K~~IA~~A~~---~~I~dg~vI~ld-sGsT~~~la~~L~~ 44 (166)
.++.+++.|++ +.++++++|+|+ +|+|...++++|..
T Consensus 39 ~~~~l~~~aA~~l~~~l~~~~viGla~~G~T~~~~~~~l~~ 79 (264)
T 2r5f_A 39 IKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHP 79 (264)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEECcchHHHHHHHHhhcc
Confidence 36677777765 136899999999 99999999999964
No 49
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=93.32 E-value=0.26 Score=42.65 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
.+.+++||+.|++ +|+||+++=+|.|..-..++.+|.++ .++.+-|
T Consensus 187 ~~~~~~Ia~~~a~-~i~dg~~lqlGiG~ip~av~~~l~~~-----~~l~i~t 232 (436)
T 2oas_A 187 DAVSLAIGQHVAE-LVRDGDCLQMGIGAIPDAVLSCLTGH-----KDLGVHT 232 (436)
T ss_dssp CHHHHHHHHHHHH-HCCTTCEEECCSSHHHHHHHHTCTTC-----CSBEEBC
T ss_pred ChHHHHHHHHHHH-hcCCCCEEeecCcHHHHHHHHHHhhc-----CceeEEe
Confidence 4568899999999 89999999999999999999999764 3566644
No 50
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=93.20 E-value=0.98 Score=39.93 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCC------CCCCEEEECcChhHHHHHHHHHHHHhhcCCC----eEEEcChHHHHHHHHhCCC-----
Q psy481 7 EAKRIAAYQAVDDNV------LNNTAVGIGSGSTVVYAVDRLAERIKAEKLK----IVCVPTSFQARQLILKNNM----- 71 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I------~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~----ltvVTnS~~ia~~l~~~~i----- 71 (166)
+.+++||+.|++ +| +||+++=+|.|..-..++.+|.+..+..... +.-++.++ ..+.+.|.
T Consensus 248 ~~~~~IA~~~a~-~i~~~g~~~dG~~lqlGIG~ip~aV~~~l~~~~~~l~i~se~g~~g~~d~~---~~l~e~G~i~~~~ 323 (509)
T 1xr4_A 248 PRELLIARQAAN-VIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHNITASFGLGGITGTM---VDLHEKGLIKALL 323 (509)
T ss_dssp HHHHHHHHHHHH-HHHTTSCCSTTEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEEEECHHH---HHHHHTTSBSCEE
T ss_pred hHHHHHHHHHHH-HHHhcCcCCCCCEEEeccChHHHHHHHHhhhhcccceeecccccCCcCCcc---HhHHhCCCccCCc
Confidence 567899999999 89 9999999999998888999997641111111 11244333 22333332
Q ss_pred ee------------------eeC-----------CCCCcccEEEEccccccCCCccc----------cCCcchHHHHHHH
Q psy481 72 VL------------------GDL-----------ETHPDLSCVIDGADEVDENLVLI----------KGGGGCLTQEKIV 112 (166)
Q Consensus 72 ~v------------------~~l-----------~~~~~~D~af~gad~vd~~~~~~----------~~~~~a~~~ek~i 112 (166)
.. .+. ....+.|+++.||-+||..+++- .|-||+. =+
T Consensus 324 ~~~~f~~g~~~~~~~n~~~~~~~~~~~~n~~~~~~~~~~ldiai~galevD~~G~vn~~~~~~g~~~~G~GG~~----D~ 399 (509)
T 1xr4_A 324 DTQSFDGDAARSLAQNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGGHS----DT 399 (509)
T ss_dssp EEEECSHHHHHHHHHCTTEEECCHHHHTCTTCSCCGGGGCSEEEECCSEECTTCCEECSBCTTSCBCSBCTTHH----HH
T ss_pred ceeEeeccHHHHHHhCCcceEEeccccccCcchhhhhcCCCeEEeeeEEEccCCceeeeeccCCeEecccccHH----HH
Confidence 11 110 01136799999999999876541 2222322 12
Q ss_pred HhhCCceEEEEcCC-----Cccccc
Q psy481 113 ASCTPKLVIIADHT-----KQSKNL 132 (166)
Q Consensus 113 ~~~A~~~illaD~s-----Kf~~~l 132 (166)
++.|+++|+...|+ |+++++
T Consensus 400 ~~gA~~sii~~~~t~~~~skIV~~~ 424 (509)
T 1xr4_A 400 AAGADLTIITAPLVRGRIPCVVEKV 424 (509)
T ss_dssp HHHSSEEEEECCSEETTEESBCSSC
T ss_pred hhccCeEEEEEcccCCCCCeEeeCC
Confidence 36888999988875 555554
No 51
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=91.57 E-value=0.013 Score=49.24 Aligned_cols=50 Identities=14% Similarity=-0.053 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHH-HHHHH
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQA-RQLIL 67 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~i-a~~l~ 67 (166)
+.++|++||+.|++ +|+ |+|||+.++|+.|.+. .++++|||+... +..+.
T Consensus 98 ~~~eK~~Ia~~aa~----~~~----d~gtt~~~~a~~Ls~~-----~~~tvv~~~~~~~~~~L~ 148 (338)
T 1stz_A 98 TSEADLAVETFKSM----PLA----DPEKVLFLAGNLLARL-----TEGYVLIERPNTRDLKIL 148 (338)
T ss_dssp SCCCCHHHHTCCCT----TBC----CHHHHHHHHHHHHHHH-----HTCEEEEECCCGGGCBCC
T ss_pred CHHHHHHHHHHHhh----cCC----CHHHHHHHHHHHHhcc-----CCeEEEEeCCHHHHHHhh
Confidence 34678999987764 466 9999999999999764 168888888764 55444
No 52
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=91.35 E-value=0.25 Score=43.52 Aligned_cols=43 Identities=7% Similarity=-0.109 Sum_probs=32.8
Q ss_pred cccEEEEccccccCCCccccCCcchHHHHHHHHhhCCceEEEEc
Q psy481 81 DLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124 (166)
Q Consensus 81 ~~D~af~gad~vd~~~~~~~~~~~a~~~ek~i~~~A~~~illaD 124 (166)
++|++++-+.-.|..+++..+.....+ ...++..|+.+|+=++
T Consensus 165 ~~DvAli~a~~aD~~GN~~~~~~~~~~-~~~~a~AA~~vIveVe 207 (481)
T 3k6m_A 165 RGDFALVKAWKADQAGNVTFRKSARNF-NLPMCKAAETTVVEVE 207 (481)
T ss_dssp CEEEEEEEEEEEETTCCEECCGGGCTT-HHHHTTSEEEEEEEEE
T ss_pred CCCEEEEEcCcCCCCceEEEeCccchh-hHHHHHhCCeEEEEEe
Confidence 679999999999999999776544333 3678888888887443
No 53
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A*
Probab=89.62 E-value=0.21 Score=39.93 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=33.8
Q ss_pred HHHHHHHHHh---cCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 9 KRIAAYQAVD---DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 9 K~~IA~~A~~---~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
++.+++.|++ +.++++++|+|++|+|...++++|.... ...++++|.
T Consensus 39 ~~~l~~~aA~~l~~~l~~~~viGla~G~T~~~~~~~l~~~~--~~~~v~~v~ 88 (255)
T 2okg_A 39 KKEMGRAAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDS--KNRELLFVP 88 (255)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEECCSHHHHHHHHHCCCCT--TCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhhcccc--CCCCCEEEE
Confidence 5667776665 1468999999999999999999996421 113566653
No 54
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=88.64 E-value=0.58 Score=40.97 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
+..++||+.+++ +|+||.++=+|.|+.-.+++.+|.++ +++.+-|
T Consensus 219 ~~~~~Ia~~va~-~i~dG~~lQ~GiG~ip~Av~~~L~~~-----~~lgi~t 263 (455)
T 3qli_A 219 PEYTSISHIIAD-LVPDGACLQMGVGALPNLVCGVLKDR-----NDLGIHT 263 (455)
T ss_dssp THHHHHHHHHHH-TCCTTCEEEECSSHHHHHHHHHGGGC-----CSBEEBC
T ss_pred hHHHHHHHHHHH-HhcCCCeEEeccchHHHHHHHhcCcC-----CCeEEEc
Confidence 567889999999 99999999999999999999999864 3666655
No 55
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=86.34 E-value=0.69 Score=40.31 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
.+..++||+.+++ +|+||+++=+|.|..-..++.+|.+. .++.+-|--
T Consensus 192 ~~~~~~IA~~~a~-~i~dG~~lqlGIG~ip~aV~~~L~~~-----~~l~~~tE~ 239 (448)
T 3gk7_A 192 GEVEAAIGKHCAS-LIEDGSTLQLGIGAIPDAVLSQLKDK-----KHLGIHSEM 239 (448)
T ss_dssp CHHHHHHHHHHHT-TCCTTCEEEBCSSHHHHHHHHTCTTC-----CSBEEEEEE
T ss_pred CcHHHHHHHHHHH-HccCCCEEEeccCcHHHHHHHHhhhc-----CCeeEEcCC
Confidence 4678899999999 99999999999999999999998753 255554443
No 56
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=86.19 E-value=0.8 Score=39.67 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHH
Q psy481 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~ 45 (166)
.+..++||+.|++ +|+||.++=+|.|..-..++..|.++
T Consensus 196 ~~~~~~Ia~~~a~-~i~dG~~lq~GiG~ip~AV~~~L~~~ 234 (434)
T 3eh7_A 196 GEVEEAIGRNCAE-LIEDGATLQLGIGAIPDAALLFLKDK 234 (434)
T ss_dssp CHHHHHHHHHHHH-TCCTTCEEECCSSHHHHHHHHTTTTC
T ss_pred ChHHHHHHHHHHH-hccCCCEEEeccchHHHHHHHHhhhc
Confidence 3567899999999 99999999999999999999998753
No 57
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=82.39 E-value=5.6 Score=27.90 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeC
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL 76 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l 76 (166)
+.++.+|.|..-..+++.|.+. ...++++..+.+....+.+.|+.++.-
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~----g~~v~vid~~~~~~~~~~~~g~~~i~g 56 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS----DIPLVVIETSRTRVDELRERGVRAVLG 56 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHTTCEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHcCCCEEEC
Confidence 6799999999999999999864 247999999999888888888876543
No 58
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=80.29 E-value=1.6 Score=38.58 Aligned_cols=118 Identities=14% Similarity=0.159 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCC------CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeE----EEcChHHHHHHHHhCCC-e---
Q psy481 7 EAKRIAAYQAVDDNV------LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIV----CVPTSFQARQLILKNNM-V--- 72 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I------~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~lt----vVTnS~~ia~~l~~~~i-~--- 72 (166)
+.+++||+.|++ +| +||+++-+|.|+.-..++.+|.++.+.....-- -++.++ ..|.+.|. +
T Consensus 251 ~~~~~IA~~~a~-~i~~~g~l~dG~~lqlGiG~ip~aV~~~L~~~~~~l~i~se~g~~g~~~~~---~~lieaG~i~~~~ 326 (519)
T 2hj0_A 251 PKELLIAEYAAK-VITSSPYYKEGFSFQTGTGGASLAVTRFMREQMIKDDIKANFALGGITNAM---VELLEEGLVDKIL 326 (519)
T ss_dssp HHHHHHHHHHHH-HHHTSTTCSTTCEEECCSSHHHHHHHHHHHHHHHHSCCCEEEECSEECHHH---HHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHH-HHHhcccCCCCCEEEeccChHHHHHHHHHhhhcccceeeeceeccCcChhH---HHHHHCCCCCCCc
Confidence 567889999999 75 999999999998888888988765111000000 133221 12223331 1
Q ss_pred -------------------eeeC------------CCCCcccEEEEccccccCCCccc----------cCCcchHHHHHH
Q psy481 73 -------------------LGDL------------ETHPDLSCVIDGADEVDENLVLI----------KGGGGCLTQEKI 111 (166)
Q Consensus 73 -------------------v~~l------------~~~~~~D~af~gad~vd~~~~~~----------~~~~~a~~~ek~ 111 (166)
.+.+ ....+.|++|+||-+||..+++- .|.||+. =
T Consensus 327 ~~~~f~~G~~~~~~~n~~~~~~~~~~~~~n~~n~p~~i~~ldv~ilga~eVD~~Gnvn~~~~~gg~~~~G~GG~~----D 402 (519)
T 2hj0_A 327 DVQDFDHPSAVSLDRNAEKHYEIDANMYASPLSKGSVINQLDICVLSALEVDTNFNVNVMTGSDGVIRGASGGHC----D 402 (519)
T ss_dssp ESEESSHHHHHHHHHTTTTEEECCHHHHHCSSSSCCGGGGCSEEEECCSEECTTCCEECSBCTTCCBCCBCTTHH----H
T ss_pred cccccccchHHHHHhCcHhhEEEchHHhhccCCCHHHhccCCeeeeeeEEEccCCceeeeeccCCeEecccccHH----H
Confidence 1100 11236899999999999876542 2223322 1
Q ss_pred HHhhCCceEEEEcCC-----Cccccc
Q psy481 112 VASCTPKLVIIADHT-----KQSKNL 132 (166)
Q Consensus 112 i~~~A~~~illaD~s-----Kf~~~l 132 (166)
+++.|+++|+...|+ ||++++
T Consensus 403 ~~~gA~~~ii~~~~t~g~~skiV~~~ 428 (519)
T 2hj0_A 403 TAFAAKMSLVISPLVRGRIPTFVDKV 428 (519)
T ss_dssp HHHHSSEEEEECCSEETTEESBCSSC
T ss_pred HhhccCeEEEEEcccCCCCCeeccCC
Confidence 336888999998887 455554
No 59
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A*
Probab=78.59 E-value=1.5 Score=33.98 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=25.6
Q ss_pred HHHHHHHHhcC----CC-CCCEEEECcChhHHHHHHHHHH
Q psy481 10 RIAAYQAVDDN----VL-NNTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 10 ~~IA~~A~~~~----I~-dg~vI~ldsGsT~~~la~~L~~ 44 (166)
+.+++.|++ + ++ .+++|+|..|+|...+.++|..
T Consensus 11 ~~l~~~aA~-~l~~~i~~~~~~i~ls~G~T~~~~~~~L~~ 49 (234)
T 2ri0_A 11 TEGSKVAFR-MLEEEITFGAKTLGLATGSTPLELYKEIRE 49 (234)
T ss_dssp HHHHHHHHH-HHHHHHHTTCCEEEECCSSTTHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHhCCCEEEEcCCCCHHHHHHHHHh
Confidence 445555554 3 34 4579999999999999999974
No 60
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A*
Probab=76.33 E-value=1.9 Score=33.51 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHHHHHhcC----CC--CCCEEEECcChhHHHHHHHHHH
Q psy481 10 RIAAYQAVDDN----VL--NNTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 10 ~~IA~~A~~~~----I~--dg~vI~ldsGsT~~~la~~L~~ 44 (166)
+.+|+.|++ + ++ ++++|+|..|+|...+.+.|.+
T Consensus 10 ~~l~~~aA~-~l~~~i~~~~~~~i~lsgG~T~~~~~~~L~~ 49 (242)
T 2bkx_A 10 EELSQIAAR-ITADTIKEKPDAVLGLATGGTPEGTYRQLIR 49 (242)
T ss_dssp HHHHHHHHH-HHHHHHHHCTTCEEEECCSSTTHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHCCCeEEEECCCCCHHHHHHHHHH
Confidence 345555554 3 33 4789999999999999999974
No 61
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=69.59 E-value=0.33 Score=32.53 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCCCCCEEEECcChhHHH
Q psy481 7 EAKRIAAYQAVDDNVLNNTAVGIGSGSTVVY 37 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~ 37 (166)
+.|.+-+++++..+|++|-..|.-||||+++
T Consensus 33 ~~k~r~vKK~~~~LV~Eg~leywSSGSTTmy 63 (78)
T 1ucr_A 33 DMKQREVKKILTALVNDEVLEYWSSGSTTMY 63 (78)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred ccCHHHHHHHHHHHHhcCceEEEecCCeEEE
Confidence 4566667777766999999999999998865
No 62
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=65.94 E-value=35 Score=28.78 Aligned_cols=64 Identities=14% Similarity=0.050 Sum_probs=48.2
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCC----------CCcccEEEEccc
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLET----------HPDLSCVIDGAD 90 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~----------~~~~D~af~gad 90 (166)
.+.+|.+|.|..-..+++.|... ...+++|..+.+....+...|.+++.-+. ..+.|..+...+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~----g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS----GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT----TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 35699999999999999999864 24799999999998888888887664321 235666665544
No 63
>3ix7_A Uncharacterized protein TTHA0540; unknown function, thermus thermophilus HB8, structural genom 2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus}
Probab=62.84 E-value=11 Score=27.28 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCC----CCCEEEE---CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCC
Q psy481 7 EAKRIAAYQAVDDNVL----NNTAVGI---GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLE 77 (166)
Q Consensus 7 ~~K~~IA~~A~~~~I~----dg~vI~l---dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~ 77 (166)
+.|+..|+.+++ .++ .+++-+. ..++.+-..+..+... .+.++|||+......+...|+++..++
T Consensus 52 ~~~r~rGr~gL~-iL~~L~~~~~vei~~~~~~~~~vD~~ll~lA~~-----~~~~lvTnD~~L~kvA~~~GI~Vl~l~ 123 (134)
T 3ix7_A 52 PLRRAKGRRGLE-TLERLREAAPLEVLETTPKGESVDEKLLFLARD-----LEAALVTNDHALLQMARIYGVKALSIQ 123 (134)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHSCEEEECCCCSCSSHHHHHHHHHHH-----TTCEEEESCHHHHHHHHHTTCCEEEHH
T ss_pred hhhHHHHHHHHH-HHHHHHhcCCEEEeCCCCCcccHHHHHHHHHHH-----hCCEEEeCCHHHHHHHHHCCCeEEehH
Confidence 456777777776 442 1224444 3344555555555543 268999999999999999999988764
No 64
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.47 E-value=30 Score=24.85 Aligned_cols=49 Identities=16% Similarity=0.018 Sum_probs=38.5
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
...++.+|.|..-..+++.|... ....++++..+.+-...+.+.|..++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~---~g~~V~vid~~~~~~~~~~~~g~~~~ 87 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRAR---YGKISLGIEIREEAAQQHRSEGRNVI 87 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHH---HCSCEEEEESCHHHHHHHHHTTCCEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhc---cCCeEEEEECCHHHHHHHHHCCCCEE
Confidence 45799999999999999999752 02379999999888777777777654
No 65
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=62.43 E-value=34 Score=23.35 Aligned_cols=96 Identities=17% Similarity=0.093 Sum_probs=59.8
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCC----------CCcccEEEEcccccc
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLET----------HPDLSCVIDGADEVD 93 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~----------~~~~D~af~gad~vd 93 (166)
..++.+|.|..-..+++.|.+. ...++++..+.+....+.+.+..++..+. ...+|..|...+...
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~----g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA----GKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE 82 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHC----CCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence 4689999999999999999864 23799999998888777777776554321 125676666554211
Q ss_pred CCCccccCCcchHHHHHHHHhhCCceEEEEcCCCccccc
Q psy481 94 ENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNL 132 (166)
Q Consensus 94 ~~~~~~~~~~~a~~~ek~i~~~A~~~illaD~sKf~~~l 132 (166)
. +.. .+... |.+ . ..+++..+......+.|
T Consensus 83 ~--n~~----~~~~a-~~~-~-~~~iia~~~~~~~~~~l 112 (141)
T 3llv_A 83 F--NLK----ILKAL-RSV-S-DVYAIVRVSSPKKKEEF 112 (141)
T ss_dssp H--HHH----HHHHH-HHH-C-CCCEEEEESCGGGHHHH
T ss_pred H--HHH----HHHHH-HHh-C-CceEEEEEcChhHHHHH
Confidence 1 110 01111 112 1 45777777777665555
No 66
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=56.22 E-value=25 Score=30.87 Aligned_cols=114 Identities=12% Similarity=0.039 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHh---------cCCCCCCEEEECcChhHHHHHHHHHHHHhhc-CCCeEEEcChHH-HHHHHHhCCC-ee
Q psy481 6 EEAKRIAAYQAVD---------DNVLNNTAVGIGSGSTVVYAVDRLAERIKAE-KLKIVCVPTSFQ-ARQLILKNNM-VL 73 (166)
Q Consensus 6 ~~~K~~IA~~A~~---------~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~-~~~ltvVTnS~~-ia~~l~~~~i-~v 73 (166)
.+.+++||+.|++ ++.++|+++=+|.|+....++..|.+. . -+++.+-|--+. .-..|.+.|. +.
T Consensus 225 ~~~~~~Ia~~~a~~i~~~~~~G~l~~~~~~lq~GiG~ip~aV~~~l~~~---~~~~~l~i~te~~~d~~~~lieaG~i~~ 301 (506)
T 2nvv_A 225 DPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDN---PDIPAFNMYTEVIQDAVIALMKKGRIKF 301 (506)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEECSSHHHHHHHHHHHHC---TTSCCEEEECSEECHHHHHHHHTTSEEE
T ss_pred ChHHHHHHHHHHHHHHhhhhcCcccCCCceEEeCCCHHHHHHHHHhhhc---CCcccceEEecccccchHHHHHCCCCCC
Confidence 3668899999998 223344999999999999999999874 1 124555443221 1223445553 31
Q ss_pred e---eC--C------------C-CC-----------------c-ccEEEEccccccCCCccc----------cCCcchHH
Q psy481 74 G---DL--E------------T-HP-----------------D-LSCVIDGADEVDENLVLI----------KGGGGCLT 107 (166)
Q Consensus 74 ~---~l--~------------~-~~-----------------~-~D~af~gad~vd~~~~~~----------~~~~~a~~ 107 (166)
. .+ . + .. + -+++|.||-+||..+++- .|-||+.-
T Consensus 302 ~~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~~~N~p~~i~~~~~iain~alevD~~G~vn~~~~~g~~~~~G~GG~~D 381 (506)
T 2nvv_A 302 ASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGD 381 (506)
T ss_dssp EEESEECCCHHHHHHHHTCHHHHTTTEEECBHHHHTCHHHHHHHTCEEEEECSEEETTSCEECSEETTTEECSCCTTHHH
T ss_pred eeeeEeecccccHHHHHhhHHhcCCceeeecccccCCHHHHhCCCcEEEehhheecCCCceeeeeccCCceEcccCcHHH
Confidence 1 11 0 0 00 1 159999999999776542 22233221
Q ss_pred HHHHHHhhCCceEEEEcCC
Q psy481 108 QEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 108 ~ek~i~~~A~~~illaD~s 126 (166)
+.+.|+++|+...|+
T Consensus 382 ----f~~gA~~si~~~~st 396 (506)
T 2nvv_A 382 ----FTRNSYVSIFTTPSV 396 (506)
T ss_dssp ----HHHHSSSEEEECCSE
T ss_pred ----HhhccCeEEEEeccc
Confidence 236888999988876
No 67
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A
Probab=53.29 E-value=6.6 Score=30.95 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.5
Q ss_pred CCEEEECcChhHHHHHHHHHH
Q psy481 24 NTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~ 44 (166)
+.+|+|.+|+|...+.+.|.+
T Consensus 34 ~~~i~lsgGsTp~~~~~~L~~ 54 (266)
T 1fs5_A 34 PFVLGLPTGGTPMTTYKALVE 54 (266)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred ceEEEEcCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 68
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=53.03 E-value=19 Score=31.49 Aligned_cols=113 Identities=16% Similarity=0.063 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhcC----CCCC------CEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH-HHHHHHhCCC-ee
Q psy481 6 EEAKRIAAYQAVDDN----VLNN------TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ-ARQLILKNNM-VL 73 (166)
Q Consensus 6 ~~~K~~IA~~A~~~~----I~dg------~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~-ia~~l~~~~i-~v 73 (166)
.+..++||+.|++ + |++| .++=+|.|+.-..++..|.+. .-.++.+-|--+. -...|.+.|. +.
T Consensus 230 ~~~~~~Ia~~~a~-~i~~~~~~G~l~~~~~~lqlGiG~ip~aV~~~l~~~---~~~~l~~~se~~~d~~~~li~aG~~~~ 305 (497)
T 2g39_A 230 DGETQAIANHLID-FFKREVDAGRMSNSLGPLQAGIGSIANAVMCGLIES---PFENLTMYSEVLQDSTFDLIDAGKLRF 305 (497)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHTTSSCTTCSCEEECSSHHHHHHHHGGGSS---SCCSEEEECSEECHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHH-HHHhhhhcCCcccCCceEEeeEcHHHHHHHHHhhhc---ccccceEEeeccchhHHHHHHCCCCcc
Confidence 3668899999998 4 3455 999999999999999999753 1135655554211 1113445553 31
Q ss_pred ---ee--CC------------CC-C-----------------c-ccEEEEccccccCCCccc----------cCCcchHH
Q psy481 74 ---GD--LE------------TH-P-----------------D-LSCVIDGADEVDENLVLI----------KGGGGCLT 107 (166)
Q Consensus 74 ---~~--l~------------~~-~-----------------~-~D~af~gad~vd~~~~~~----------~~~~~a~~ 107 (166)
.. +. ++ . + -+++|.||-+||..+++- .|-||+.
T Consensus 306 ~~~~~f~~~~~g~~~~~~~~~~~~~~i~~~~~~~~N~p~~i~~~~~iain~a~evD~~G~vn~~~~~g~~~~~G~GG~~- 384 (497)
T 2g39_A 306 ASGSSITLSPRRNADVFGNLERYKDKLVLRPQEISNHPEVVRRLGIIGINTALEFDIYGNVNSTHVGGTKMMNGIGGSG- 384 (497)
T ss_dssp EEESEECCCHHHHHHHHHSGGGTGGGEEECBHHHHTCHHHHHHHTCEEEEECSEEETTSCEESSEETTTEECSCCTTHH-
T ss_pred eeeeeeccccccHHHHHHhHHhcCCceeeecccccCCHHHHhCCCcEEEehhheccCCCceeeeeccCCcEEeccCcch-
Confidence 11 10 10 0 1 159999999999877551 2222322
Q ss_pred HHHHHHhhCCceEEEEcCC
Q psy481 108 QEKIVASCTPKLVIIADHT 126 (166)
Q Consensus 108 ~ek~i~~~A~~~illaD~s 126 (166)
=+++.|+++|+...|+
T Consensus 385 ---Df~~gA~~sii~~~st 400 (497)
T 2g39_A 385 ---DFARNAHLAIFVTKSI 400 (497)
T ss_dssp ---HHHHHCSEEEEECCSE
T ss_pred ---hhhccCCEEEEEEccc
Confidence 1236889999998886
No 69
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=49.35 E-value=35 Score=29.82 Aligned_cols=102 Identities=16% Similarity=0.086 Sum_probs=61.4
Q ss_pred CCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHH-HHHHhCCC-ee-----eeCC---------------
Q psy481 20 NVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQAR-QLILKNNM-VL-----GDLE--------------- 77 (166)
Q Consensus 20 ~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia-~~l~~~~i-~v-----~~l~--------------- 77 (166)
+++||.++=+|.|..-..++..|.++ ..+++.+-|--+.-. ..|.+.|. .- ..+.
T Consensus 259 l~~dG~~lQ~GiG~ip~AV~~~L~~~---~~~~l~~~te~~~d~~~~L~e~G~i~~~~~~~~~~~~~~~~~~~~~~d~~~ 335 (514)
T 4eu9_A 259 LPPSLLPLQSGVGNVANAVLEGLKEG---PFENLVGYSEVIQDGMLAMLDSGRMRIASASSFSLSPEAAEEINNRMDFFR 335 (514)
T ss_dssp SCTTCCCEECCCSHHHHHHHHHHHHS---SCCSEEEESSEECHHHHHHHHHTSEEEEEESEECCCHHHHHHHHHTHHHHH
T ss_pred ccCCCceeccCCCchHHHHHHHHhhc---CCcCceEeecCcchhhHhHHhCCceeccccceEEecHHHHHHHHhhHHhCc
Confidence 68999999999999999999999874 123666655322211 12333332 10 0000
Q ss_pred C-----------C-----CcccEEEEccccccCCCcc----------ccCCcchHHHHHHHHhhCCceEEEEcCCCc
Q psy481 78 T-----------H-----PDLSCVIDGADEVDENLVL----------IKGGGGCLTQEKIVASCTPKLVIIADHTKQ 128 (166)
Q Consensus 78 ~-----------~-----~~~D~af~gad~vd~~~~~----------~~~~~~a~~~ek~i~~~A~~~illaD~sKf 128 (166)
. . ..-|++|.||-+||..+++ +.|.||.. =.++.|..+|+...++.-
T Consensus 336 ~~~~~~~~~~~n~~~i~~~~~~iain~a~EvDl~GqVns~~~~g~~~~sG~GG~~----Df~~gA~~si~~~~st~k 408 (514)
T 4eu9_A 336 SKIILRQQDVSNSPGIIRRLGCIAMNGMIEADIYGNVNSTRVMGSKMMNGIGGSG----DFARSSYLSIFLSPSTAK 408 (514)
T ss_dssp TTEEEEBHHHHTCHHHHHHHTCEEEECCSEEETTCCEESSEETTTEECSCCTTHH----HHHHHSSEEEEECCSEET
T ss_pred CcccccchhccCcHHHhccCCeEEEecceEecccCceeeeeccCcceecCccchH----HHhhccCcEEEEEeeecC
Confidence 0 0 0127999999999977654 12222322 123578899999888753
No 70
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=46.48 E-value=13 Score=29.85 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=18.6
Q ss_pred CEEEECcChhHHHHHHHHHH
Q psy481 25 TAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~ 44 (166)
.+|+|.+|+|...+.+.|.+
T Consensus 35 ~~lglsgGsTp~~~~~~L~~ 54 (289)
T 1ne7_A 35 FTLGLPTGSTPLGCYKKLIE 54 (289)
T ss_dssp EEEEECCSHHHHHHHHHHHH
T ss_pred EEEEEcCCccHHHHHHHHHh
Confidence 69999999999999999974
No 71
>1y89_A DEVB protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; HET: 2PE; 2.00A {Vibrio cholerae o1 biovar eltor str}
Probab=43.66 E-value=25 Score=27.24 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCC--CCEEEECcChhHHHHHHHHHH
Q psy481 12 AAYQAVDDNVLN--NTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 12 IA~~A~~~~I~d--g~vI~ldsGsT~~~la~~L~~ 44 (166)
+|+..++ .+++ ..+|+|.+|||...+.+.|.+
T Consensus 17 aA~~i~~-~i~~~~~~~l~lsgGstp~~~~~~L~~ 50 (238)
T 1y89_A 17 LADDMLA-YSQQGQPVHISLSGGSTPKMLFKLLAS 50 (238)
T ss_dssp HHHHHHH-HHTTSSCEEEEECCSHHHHHHHHHHTS
T ss_pred HHHHHHH-HHHhCCCEEEEECCCccHHHHHHHHHh
Confidence 3333333 3454 679999999999999999964
No 72
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=42.86 E-value=61 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...-.|..|+|+ ++...++..+..-+.+-..+.++|+..
T Consensus 64 Ls~~Er~~v~~~~~~-~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 120 (307)
T 3s5o_A 64 LTSSERLEVVSRVRQ-AMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCY 120 (307)
T ss_dssp SCHHHHHHHHHHHHH-TSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCT
T ss_pred CCHHHHHHHHHHHHH-HcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 457899999999999 78766778888886 333333333321111234577777653
No 73
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=42.72 E-value=99 Score=22.77 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeee
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGD 75 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~ 75 (166)
++.+|.|..-..+++.|.++ ..+++++..+.+.+..+. ..+..++.
T Consensus 3 iiIiG~G~~G~~la~~L~~~----g~~v~vid~~~~~~~~l~~~~~~~~i~ 49 (218)
T 3l4b_C 3 VIIIGGETTAYYLARSMLSR----KYGVVIINKDRELCEEFAKKLKATIIH 49 (218)
T ss_dssp EEEECCHHHHHHHHHHHHHT----TCCEEEEESCHHHHHHHHHHSSSEEEE
T ss_pred EEEECCCHHHHHHHHHHHhC----CCeEEEEECCHHHHHHHHHHcCCeEEE
Confidence 78899999999999999764 237999999998877664 46766554
No 74
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=42.66 E-value=1.1e+02 Score=23.95 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=38.7
Q ss_pred CCCCCEEEE--CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCe-eeeCCCC-------CcccEEEEccc
Q psy481 21 VLNNTAVGI--GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMV-LGDLETH-------PDLSCVIDGAD 90 (166)
Q Consensus 21 I~dg~vI~l--dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~-v~~l~~~-------~~~D~af~gad 90 (166)
+++|++|.| ++|..=...++.++.. + ..++++.++-+ ...+.+.|.. ++..... ..+|++|+.+.
T Consensus 150 ~~~g~~vlV~Ga~G~vG~~a~q~a~~~---G-a~vi~~~~~~~-~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 150 VKQGDVVLIHAGAGGVGHLAIQLAKQK---G-TTVITTASKRN-HAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT---T-CEEEEEECHHH-HHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHc---C-CEEEEEeccch-HHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCC
Confidence 789999988 3566655555555433 2 24544554444 4455677764 4433322 25899998665
Q ss_pred c
Q psy481 91 E 91 (166)
Q Consensus 91 ~ 91 (166)
+
T Consensus 225 ~ 225 (321)
T 3tqh_A 225 G 225 (321)
T ss_dssp H
T ss_pred c
Confidence 4
No 75
>3css_A 6-phosphogluconolactonase; structural genomics, medical structural genomics of pathogen protozoa consortium, SGPP, leish hydrolase; 1.70A {Leishmania braziliensis} PDB: 3ch7_A
Probab=42.63 E-value=17 Score=28.90 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCEEEECcChhHHHHHHHHHH
Q psy481 24 NTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~ 44 (166)
..+|+|.+|||...+.+.|.+
T Consensus 38 ~~~l~LsgGstp~~ly~~L~~ 58 (267)
T 3css_A 38 PVVLALSGGSTPKRLYEELHE 58 (267)
T ss_dssp CEEEEECCSSTTHHHHHHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHH
Confidence 569999999999999998865
No 76
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=41.14 E-value=1.2e+02 Score=23.35 Aligned_cols=50 Identities=10% Similarity=0.206 Sum_probs=35.3
Q ss_pred CCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHH--HHHHHHhCCCeee
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQ--ARQLILKNNMVLG 74 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~--ia~~l~~~~i~v~ 74 (166)
++...++.+|+|.....-++.|.+. .-.++||.+... +..+....++..+
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~~----GA~VtVvap~~~~~l~~l~~~~~i~~i 80 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQE----GAAITVVAPTVSAEINEWEAKGQLRVK 80 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGGG----CCCEEEECSSCCHHHHHHHHTTSCEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC----CCEEEEECCCCCHHHHHHHHcCCcEEE
Confidence 4677899999999999999998764 237999987754 2223344456544
No 77
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=40.75 E-value=57 Score=23.78 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCC
Q psy481 34 TVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETH 79 (166)
Q Consensus 34 T~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~ 79 (166)
.+-..+..|... .+.+++||+......+...|+++..+...
T Consensus 93 ~vD~~l~~lA~~-----~~a~lvTnD~~l~kvA~~~GI~V~~l~~~ 133 (142)
T 3i8o_A 93 EIDAMIRKVAKE-----TNSILLTSDWIQYNLAKAQGIEAYFLEAA 133 (142)
T ss_dssp SHHHHHHHHHHH-----TTCEEEESCHHHHHHHHHTTCCEEECCCC
T ss_pred cHHHHHHHHHHH-----hCCEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence 444444455543 37889999999999999999999988654
No 78
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*
Probab=40.58 E-value=54 Score=26.16 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=43.4
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCCCcccEEEEc
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDG 88 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~~~~D~af~g 88 (166)
..++.||+|-+...++..|.+. + ..++|+.-+..-+..+.+.+++...+.+...+|+.|-.
T Consensus 119 k~vlvlGaGGaaraia~~L~~~---G-~~v~V~nRt~~ka~~la~~~~~~~~~~~l~~~DiVIna 179 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQ---G-LQVSVLNRSSRGLDFFQRLGCDCFMEPPKSAFDLIINA 179 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT---T-CEEEEECSSCTTHHHHHHHTCEEESSCCSSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHC---C-CEEEEEeCCHHHHHHHHHCCCeEecHHHhccCCEEEEc
Confidence 4578899999999999999864 3 46888877766665554556666555554467877643
No 79
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=39.78 E-value=44 Score=26.93 Aligned_cols=56 Identities=5% Similarity=-0.060 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 61 Ls~eEr~~v~~~~~~-~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 117 (303)
T 2wkj_A 61 QSLSEREQVLEIVAE-EAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFY 117 (303)
T ss_dssp SCHHHHHHHHHHHHH-HHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCC
Confidence 457899999999998 67766778888887 334433333321111334577887753
No 80
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=39.10 E-value=37 Score=27.56 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
+..+||+++.+.+++ .+...--|..|+|+++...++..+..-+.+-..+.++|+
T Consensus 62 Ls~eEr~~v~~~~v~-~~~grvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P 115 (316)
T 3e96_A 62 LSLEEAKEEVRRTVE-YVHGRALVVAGIGYATSTAIELGNAAKAAGADAVMIHMP 115 (316)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 457899999999998 677666777777777777666554321123335666654
No 81
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=37.77 E-value=59 Score=25.96 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+.. |..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 49 Ls~eEr~~v~~~~~~-~~~g---viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 102 (293)
T 1w3i_A 49 LSPEEKLENLKAVYD-VTNK---IIFQVGGLNLDDAIRLAKLSKDFDIVGIASYAPYY 102 (293)
T ss_dssp SCHHHHHHHHHHHHT-TCSC---EEEECCCSCHHHHHHHHHHGGGSCCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HcCC---EEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 457899999999998 6664 6677777 334444433322111223577777653
No 82
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=37.18 E-value=40 Score=27.37 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|+|+++...++..+..-+.+-..+.++|+.
T Consensus 62 Ls~eEr~~vi~~~~~-~~~grvpViaGvg~st~~ai~la~~A~~~Gadavlv~~P~ 116 (314)
T 3d0c_A 62 LTIEEAKQVATRVTE-LVNGRATVVAGIGYSVDTAIELGKSAIDSGADCVMIHQPV 116 (314)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSEEEEEECSSHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEecCCcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 457899999999998 6775556666666644444444432211132357777764
No 83
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=37.00 E-value=1e+02 Score=21.27 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=34.2
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh-HHHHHHH---HhCCCeeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS-FQARQLI---LKNNMVLGD 75 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS-~~ia~~l---~~~~i~v~~ 75 (166)
.+.++.+|.|..-..+++.|.+. ..++++|..+ ...+..+ ...++.++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~----g~~V~vid~~~~~~~~~~~~~~~~~~~~i~ 55 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQR----GQNVTVISNLPEDDIKQLEQRLGDNADVIP 55 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT----TCCEEEEECCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCCEEEEECCChHHHHHHHHhhcCCCeEEE
Confidence 46789999999999999999763 2379999886 4433323 234666554
No 84
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=36.98 E-value=50 Score=26.37 Aligned_cols=56 Identities=20% Similarity=0.089 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|+|+ ++...++..+..-+.+-..+.++|+..
T Consensus 50 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (294)
T 2ehh_A 50 LTFEEHEKVIEFAVK-RAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYY 106 (294)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 456899999999998 67766678888887 334444333322111334577777753
No 85
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=36.71 E-value=53 Score=26.19 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 50 Ls~~Er~~v~~~~~~-~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 106 (289)
T 2yxg_A 50 LSHEEHKKVIEKVVD-VVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYY 106 (289)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 456899999999998 67766678788887 333333333321111334577777653
No 86
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=36.61 E-value=48 Score=26.68 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 66 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 122 (304)
T 3cpr_A 66 TTAAEKLELLKAVRE-EVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYY 122 (304)
T ss_dssp SCHHHHHHHHHHHHH-HHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 457899999999998 67766678788887 344444433322111334577887753
No 87
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=36.51 E-value=91 Score=20.57 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=41.1
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeeeeCC----------CCCcccEEEEcc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLGDLE----------THPDLSCVIDGA 89 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~~l~----------~~~~~D~af~ga 89 (166)
++.+|.|..-..+++.|.+. ..+++++..+.+....+. ..++..+.-. ....+|..|...
T Consensus 7 i~IiG~G~iG~~~a~~L~~~----g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 7 IIIAGIGRVGYTLAKSLSEK----GHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp EEEECCSHHHHHHHHHHHHT----TCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHhC----CCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 67889999999999999764 236888988877666564 4466543221 123567777764
No 88
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=36.45 E-value=53 Score=26.24 Aligned_cols=56 Identities=20% Similarity=0.054 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|.|++ +...++..+..-+.+-..+.++|+..
T Consensus 54 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (293)
T 1f6k_A 54 LSTEEKKEIFRIAKD-EAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFY 110 (293)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 456899999999998 677666788888873 34433333321111334577887754
No 89
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=36.10 E-value=52 Score=23.15 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=22.5
Q ss_pred CEEEECcChhHHHHHHHHHHHHhhcCCCeEEE
Q psy481 25 TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvV 56 (166)
||+.||+|.+=+.+|..|.++ ..+++|+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~----G~~V~v~ 31 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAA----GHQVHLF 31 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHT----TCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHC----CCCEEEE
Confidence 799999999999999999864 2356665
No 90
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=36.07 E-value=71 Score=27.52 Aligned_cols=50 Identities=10% Similarity=0.087 Sum_probs=41.0
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhC-CCeeeeC
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKN-NMVLGDL 76 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~-~i~v~~l 76 (166)
.+.+|.+|.|.....+++.|.+. ..++++|.++.+....+... +.+++.-
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~----~~~vvvid~~~~~~~~~~~~~~~~~i~G 177 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESR----NHLFVVVTDNYDQALHLEEQEGFKVVYG 177 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTT----TCCEEEEESCHHHHHHHHHSCSSEEEES
T ss_pred CCeEEEECCChHHHHHHHHHHHC----CCCEEEEECCHHHHHHHHHhcCCeEEEe
Confidence 57899999999999999999753 23799999999988888776 8776643
No 91
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=35.07 E-value=52 Score=26.16 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+.. |..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 48 Ls~~Er~~v~~~~~~-~~~g---vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 101 (286)
T 2r91_A 48 LSLQEKMELTDAATS-AARR---VIVQVASLNADEAIALAKYAESRGAEAVASLPPYY 101 (286)
T ss_dssp SCHHHHHHHHHHHHH-HCSS---EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCS
T ss_pred CCHHHHHHHHHHHHH-HhCC---EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 457899999999998 6664 6677777 334433333322111223577777653
No 92
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=34.11 E-value=56 Score=26.05 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+.+ .+.. |..|.|+ ++...++..+..-+.+-..+.++|+.
T Consensus 49 Ls~eEr~~v~~~~~~-~~~g---ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 101 (288)
T 2nuw_A 49 LSKDEKRQNLNALYD-VTHK---LIFQVGSLNLNDVMELVKFSNEMDILGVSSHSPY 101 (288)
T ss_dssp SCHHHHHHHHHHHTT-TCSC---EEEECCCSCHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHH-HhCC---eEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 457899999999998 6664 6677776 33343333332211122357777765
No 93
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=33.90 E-value=23 Score=23.06 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=22.9
Q ss_pred CCCCCCEEEECcChhHHHHHHHHHHHH
Q psy481 20 NVLNNTAVGIGSGSTVVYAVDRLAERI 46 (166)
Q Consensus 20 ~I~dg~vI~ldsGsT~~~la~~L~~~~ 46 (166)
+.++|+++-+-.|+|..-+|..+...+
T Consensus 11 ~tP~G~~~~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 11 FTPKGDVISLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp ECTTSCEEEEETTCBHHHHHHHHCHHH
T ss_pred ECCCCCEEEecCCCCHHHHHHHhhhhh
Confidence 357899999999999999999986443
No 94
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=33.86 E-value=1.6e+02 Score=22.68 Aligned_cols=85 Identities=9% Similarity=0.032 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHh--------------------hcCCCeEEEcChH--HH
Q psy481 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIK--------------------AEKLKIVCVPTSF--QA 62 (166)
Q Consensus 5 ~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~--------------------~~~~~ltvVTnS~--~i 62 (166)
+.-++...|..++. .+++|+++|+|+-......++....+.. ...+++.+|++-. ..
T Consensus 51 kT~~~L~~A~~~i~-~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e~~ 129 (208)
T 1vi6_A 51 KLDERIRVAAKFLS-RYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAIDKQ 129 (208)
T ss_dssp HHHHHHHHHHHHHT-TSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTTHH
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcchh
Confidence 34567777888887 4599999999998877665555443310 0124678887642 23
Q ss_pred H-HHHHhCCCeeeeCCCC----CcccEEEEccc
Q psy481 63 R-QLILKNNMVLGDLETH----PDLSCVIDGAD 90 (166)
Q Consensus 63 a-~~l~~~~i~v~~l~~~----~~~D~af~gad 90 (166)
| .++...|++++.+-+. ..+|..+=+-|
T Consensus 130 ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Nd 162 (208)
T 1vi6_A 130 AVSEATAVGIPVVALCDSNNSSADVDLVIPTNN 162 (208)
T ss_dssp HHHHHHHTTCCEEEEECTTCCCTTCSEEEESCC
T ss_pred HHHHHHHhCCCEEEEeCCCCCccccCEEEeCCC
Confidence 3 3788999998876321 35777776553
No 95
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=33.23 E-value=64 Score=25.85 Aligned_cols=55 Identities=24% Similarity=0.144 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHhcCCCC-CCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLN-NTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~d-g~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+.. .--|..|.|+ ++...++..+.--+.+-..+.++|+.
T Consensus 57 Ls~~Er~~v~~~~~~-~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 113 (301)
T 3m5v_A 57 LTHEEHRTCIEIAVE-TCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGILSVAPY 113 (301)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 457899999999998 6876 6778889886 34444443332211122457777764
No 96
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=32.53 E-value=53 Score=26.48 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 62 Ls~eEr~~vi~~~~~-~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y 118 (306)
T 1o5k_A 62 VNEDEREKLVSRTLE-IVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYY 118 (306)
T ss_dssp CCHHHHHHHHHHHHH-HHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 456899999999998 67755557777776 333333333321111334577777753
No 97
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=32.43 E-value=1e+02 Score=20.38 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=34.1
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVL 73 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v 73 (166)
+...++.+|.|..-..+++.|... + .+++++..+..-...+.+.+...
T Consensus 5 ~~~~v~I~G~G~iG~~~a~~l~~~---g-~~v~~~d~~~~~~~~~~~~~~~~ 52 (144)
T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRM---G-HEVLAVDINEEKVNAYASYATHA 52 (144)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHT---T-CCCEEEESCHHHHHTTTTTCSEE
T ss_pred cCCcEEEECCCHHHHHHHHHHHHC---C-CEEEEEeCCHHHHHHHHHhCCEE
Confidence 334689999999999999999764 2 36888888776655555555543
No 98
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=32.16 E-value=55 Score=26.08 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+.
T Consensus 51 Ls~~Er~~v~~~~~~-~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 106 (291)
T 3tak_A 51 LSMEEHTQVIKEIIR-VANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPY 106 (291)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 457899999999998 68766667778886 34444443332211133457777754
No 99
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=32.07 E-value=54 Score=26.36 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 62 Ls~eEr~~v~~~~~~-~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 118 (301)
T 1xky_A 62 LTSEEKVALYRHVVS-VVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYY 118 (301)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 456899999999998 67755567777776 333433333321111223577887753
No 100
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=31.80 E-value=1.9e+02 Score=22.82 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=37.8
Q ss_pred CCCCCCEEEE-CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCe-eeeCCCC-----------CcccEEE
Q psy481 20 NVLNNTAVGI-GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMV-LGDLETH-----------PDLSCVI 86 (166)
Q Consensus 20 ~I~dg~vI~l-dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~-v~~l~~~-----------~~~D~af 86 (166)
.+++|++|.| |+|. +-.++-.|.... +...++++..|..-...+.+.|.. ++..... ..+|++|
T Consensus 168 ~~~~g~~vlv~GaG~-vG~~a~qla~~~--g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~ 244 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGG-LGHVGIQILRAV--SAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVF 244 (345)
T ss_dssp GCCTTCEEEEECCSH-HHHHHHHHHHHH--CCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEE
T ss_pred CCCCCCEEEEECCCH-HHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEE
Confidence 3788986665 6654 444444444321 223566666777666667778864 3322210 1578887
Q ss_pred Eccc
Q psy481 87 DGAD 90 (166)
Q Consensus 87 ~gad 90 (166)
+.+.
T Consensus 245 d~~G 248 (345)
T 3jv7_A 245 DFVG 248 (345)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 7554
No 101
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=31.73 E-value=1.3e+02 Score=22.37 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=43.4
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCC-CCcccEEEEccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLET-HPDLSCVIDGAD 90 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~-~~~~D~af~gad 90 (166)
+.+||+|..-..+++.|.+. ..+++++..+.+.+..+.+.++....+.+ ....|+.|+.+.
T Consensus 31 I~iiG~G~~G~~la~~l~~~----g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 31 VGILGSGDFARSLATRLVGS----GFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVF 92 (215)
T ss_dssp EEEECCSHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSC
T ss_pred EEEEccCHHHHHHHHHHHHC----CCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCC
Confidence 67899999999999999753 23688888887776666666766543322 235788888765
No 102
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=31.69 E-value=40 Score=26.24 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCCCE-EEEC--cChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 10 RIAAYQAVDDNVLNNTA-VGIG--SGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 10 ~~IA~~A~~~~I~dg~v-I~ld--sGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
+.|+..|.. ++++|+. +=|| +|..+..+++.+... ...++.|=.|......+
T Consensus 58 ~~i~~l~~~-~~~~~~~vLDlGcGtG~~~~~la~~~~~~----~~~v~gvD~s~~ml~~A 112 (261)
T 4gek_A 58 SMIGMLAER-FVQPGTQVYDLGCSLGAATLSVRRNIHHD----NCKIIAIDNSPAMIERC 112 (261)
T ss_dssp HHHHHHHHH-HCCTTCEEEEETCTTTHHHHHHHHTCCSS----SCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHH-hCCCCCEEEEEeCCCCHHHHHHHHhcCCC----CCEEEEEECCHHHHHHH
Confidence 456777777 8999984 3444 455555555544321 12578888887765444
No 103
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=31.57 E-value=57 Score=26.44 Aligned_cols=55 Identities=20% Similarity=0.085 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|+|++ +...++..+.--+.+-..+.++|+.
T Consensus 73 Ls~~Er~~v~~~~v~-~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~ 128 (314)
T 3qze_A 73 LDVEEHIQVIRRVVD-QVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPY 128 (314)
T ss_dssp CCHHHHHHHHHHHHH-HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 457899999999998 677666677788863 4444443332211133457778763
No 104
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=31.47 E-value=37 Score=23.87 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=14.3
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|....++.|.+.
T Consensus 93 itTG~Tl~~a~~~L~~~ 109 (153)
T 1vdm_A 93 SDTGKTLEVVIEEVKKL 109 (153)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred cCChHHHHHHHHHHHHc
Confidence 67899999999998754
No 105
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=31.17 E-value=58 Score=26.08 Aligned_cols=55 Identities=22% Similarity=0.132 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|++ +...++..+..-+.+-..+.++|+.
T Consensus 57 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 112 (297)
T 3flu_A 57 LSVEEHTAVIEAVVK-HVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPY 112 (297)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 457899999999998 687666677788863 4443333332211122457778754
No 106
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=30.97 E-value=57 Score=26.70 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 84 Ls~eEr~~vi~~~ve-~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 140 (332)
T 2r8w_A 84 LTREERRRAIEAAAT-ILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSY 140 (332)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 457899999999998 67766667777776 333333333321111334577777653
No 107
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=30.96 E-value=55 Score=26.19 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+.+ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+.
T Consensus 53 Ls~~Er~~v~~~~~~-~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 108 (294)
T 3b4u_A 53 VGSRERQAILSSFIA-AGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPS 108 (294)
T ss_dssp SCHHHHHHHHHHHHH-TTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 457899999999998 67655556677776 33333333332111122357777654
No 108
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=30.90 E-value=59 Score=25.91 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 51 Ls~~Er~~v~~~~~~-~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (291)
T 3a5f_A 51 MTETERKETIKFVID-KVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYY 107 (291)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 456899999999998 67655557778777 333433333321111224577777754
No 109
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=30.65 E-value=47 Score=26.52 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 51 Ls~~Er~~v~~~~~~-~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 107 (292)
T 2ojp_A 51 LNHDEHADVVMMTLD-LADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTVTPYY 107 (292)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 456899999999998 67655567788887 334444433322111223577887653
No 110
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=30.41 E-value=87 Score=24.40 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=40.1
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.+-|.|.+-|++++..|.+.+.+.......++.+++-+..++..|.+.|++..
T Consensus 209 ~~~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~aIG~~Ta~~l~~~G~~~~ 261 (286)
T 1jr2_A 209 GVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVS 261 (286)
T ss_dssp CSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEESSHHHHHHHHHTTCCCS
T ss_pred CCCCEEEEEChHHHHHHHHHHhhhccccccCCEEEEECHHHHHHHHHcCCCce
Confidence 34589999999999999998864100001257899999999999999997643
No 111
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=30.09 E-value=37 Score=23.82 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=34.8
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHH-hCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL-KNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~-~~~i~v~ 74 (166)
....++.+|.|..-..+++.|... + .+++++..+...+..+. ..+..++
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~---g-~~V~vid~~~~~~~~~~~~~g~~~~ 67 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS---G-HSVVVVDKNEYAFHRLNSEFSGFTV 67 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT---T-CEEEEEESCGGGGGGSCTTCCSEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC---C-CeEEEEECCHHHHHHHHhcCCCcEE
Confidence 444588999999999999999764 2 36888887766555444 4565543
No 112
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=30.03 E-value=52 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.119 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+.
T Consensus 50 Ls~~Er~~v~~~~~~-~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 105 (292)
T 2vc6_A 50 LSKSEHEQVVEITIK-TANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPY 105 (292)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 456899999999998 67655556666666 33333333332211133457788874
No 113
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=29.91 E-value=37 Score=25.38 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=15.1
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
+|||.|..++.++|.++
T Consensus 105 ldTG~Tl~~~~~~l~~~ 121 (181)
T 3acd_A 105 VDTGLTLSYLLDYLEAR 121 (181)
T ss_dssp ESSSHHHHHHHHHHHTT
T ss_pred EcCchhHHHHHHHHhcC
Confidence 68999999999999864
No 114
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=29.54 E-value=1.8e+02 Score=22.39 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=42.0
Q ss_pred EEEECc-ChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCC-CCcccEEEEccc
Q psy481 26 AVGIGS-GSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLET-HPDLSCVIDGAD 90 (166)
Q Consensus 26 vI~lds-GsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~-~~~~D~af~gad 90 (166)
+-+||. |..-..+++.|... ..+++++..+.+.+..+.+.|+......+ ....|+.|+.+.
T Consensus 14 I~iIG~tG~mG~~la~~l~~~----g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~ 76 (286)
T 3c24_A 14 VAILGAGGKMGARITRKIHDS----AHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALP 76 (286)
T ss_dssp EEEETTTSHHHHHHHHHHHHS----SSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSC
T ss_pred EEEECCCCHHHHHHHHHHHhC----CCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCC
Confidence 668999 99999999999753 23587777777776666666654432222 235788888663
No 115
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=29.43 E-value=41 Score=20.57 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=20.4
Q ss_pred CCCCCEEEECcChhHHHHHHHHH
Q psy481 21 VLNNTAVGIGSGSTVVYAVDRLA 43 (166)
Q Consensus 21 I~dg~vI~ldsGsT~~~la~~L~ 43 (166)
+++|+..-+..|+|...+++.+.
T Consensus 7 ~p~g~~~~~~~g~T~~dla~~i~ 29 (73)
T 2kmm_A 7 TPKGEIKRLPQGATALDFAYSLH 29 (73)
T ss_dssp CTTCCEEEECTTCBHHHHHHHHC
T ss_pred cCCCCEEEcCCCCcHHHHHHHHh
Confidence 56899999999999999999884
No 116
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=29.32 E-value=70 Score=24.02 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=31.7
Q ss_pred ECcChhHHHHHHHHHHHHhhcCCC---eEEEcC-hHHHHHHHHhCCCeeeeCCCC
Q psy481 29 IGSGSTVVYAVDRLAERIKAEKLK---IVCVPT-SFQARQLILKNNMVLGDLETH 79 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~~~~~~~~---ltvVTn-S~~ia~~l~~~~i~v~~l~~~ 79 (166)
++||.|+...++.|.+. +... +++++- +.+....+.+.+++++.+-..
T Consensus 127 itTG~Tl~~a~~~L~~~---Ga~~v~v~~l~~~~~~~~~~~l~~~~~~~~~l~~~ 178 (211)
T 2aee_A 127 ISTGGSVLDAAAAASRE---GADVLGVVAIFTYELPKASQNFKEAGIKLITLSNY 178 (211)
T ss_dssp ESSCHHHHHHHHHHHHT---TCEEEEEEEEEECCCHHHHHHHHHHTCCEEESCCH
T ss_pred ccchHHHHHHHHHHHHC---CCcEEEEEEEEecccccHHHHHHhCCCCEEEEeeH
Confidence 68999999999999864 2222 334443 455555667777877766443
No 117
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=29.21 E-value=41 Score=25.87 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=15.0
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|+...++.|.+.
T Consensus 113 i~TG~Tl~~a~~~L~~~ 129 (220)
T 1tc1_A 113 VDTALTLNYLYHMYFTR 129 (220)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHhc
Confidence 68999999999999864
No 118
>1vl1_A 6PGL, 6-phosphogluconolactonase; TM1154, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO hydrolase; HET: CIT; 1.55A {Thermotoga maritima} SCOP: c.124.1.1 PDB: 1pbt_A
Probab=28.97 E-value=22 Score=27.64 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=19.9
Q ss_pred CCCCEEEECcChhHHHHHHHHHH
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAE 44 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~ 44 (166)
++..+|+|.+|||...+.+.|.+
T Consensus 44 ~~~~~l~LsgGsTp~~ly~~L~~ 66 (232)
T 1vl1_A 44 KDKIFVVLAGGRTPLPVYEKLAE 66 (232)
T ss_dssp CSCEEEEECCSTTHHHHHHHHTT
T ss_pred CCCeEEEEcCCccHHHHHHHHHH
Confidence 34679999999999999999964
No 119
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=28.54 E-value=51 Score=26.45 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+.+ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 50 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y 106 (297)
T 2rfg_A 50 LTEEEHKRVVALVAE-QAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYY 106 (297)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTT
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 456899999999998 67655556677776 333333333321111334577777754
No 120
>2jbh_A Phosphoribosyltransferase domain-containing prote; glycosyltransferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}
Probab=28.54 E-value=43 Score=25.65 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=14.6
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
|+||+|..++++.|.+.
T Consensus 144 i~TG~Tl~~a~~~L~~~ 160 (225)
T 2jbh_A 144 VGTGRTMKALLSNIEKY 160 (225)
T ss_dssp ESSSHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHhc
Confidence 68999999999998764
No 121
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=28.37 E-value=97 Score=24.96 Aligned_cols=54 Identities=11% Similarity=0.093 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+ ..--|..|+|+ ++...++..+..-+.+-..+.++|+.
T Consensus 58 Lt~~Er~~v~~~~v~-~~-grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~ 112 (313)
T 3dz1_A 58 LDAAEAEAVATRFIK-RA-KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP 112 (313)
T ss_dssp SCHHHHHHHHHHHHH-HC-TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT
T ss_pred CCHHHHHHHHHHHHH-Hc-CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 457899999999999 68 56678888886 33333333332111133356677654
No 122
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=28.14 E-value=60 Score=26.34 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+.+ .+...--|..|+|+ ++...++..+..-+.+-..+.++|++
T Consensus 61 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 116 (318)
T 3qfe_A 61 LTREERAQLIATARK-AVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVLPPA 116 (318)
T ss_dssp SCHHHHHHHHHHHHH-HHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 457899999999998 67766667778886 33333333332211133457778774
No 123
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=27.92 E-value=87 Score=25.27 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhh-cC-CCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKA-EK-LKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~-~~-~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|++ +...++..+.. +. +. ..+.++|+.
T Consensus 57 Ls~~Er~~v~~~~~~-~~~grvpViaGvg~~~t~~ai~la~~A-~~~Ga~davlv~~P~ 113 (311)
T 3h5d_A 57 LTHDEELELFAAVQK-VVNGRVPLIAGVGTNDTRDSIEFVKEV-AEFGGFAAGLAIVPY 113 (311)
T ss_dssp SCHHHHHHHHHHHHH-HSCSSSCEEEECCCSSHHHHHHHHHHH-HHSCCCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCCcCHHHHHHHHHHH-HhcCCCcEEEEcCCC
Confidence 457899999999998 787767778888873 44444433322 22 33 357778754
No 124
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding P pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=27.47 E-value=60 Score=23.51 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=15.0
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|....++.|.+.
T Consensus 108 itTG~Tl~~a~~~L~~~ 124 (181)
T 1a3c_A 108 LYTGRTVRAGMDALVDV 124 (181)
T ss_dssp ESSSHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhc
Confidence 67999999999999864
No 125
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=27.04 E-value=50 Score=24.18 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.7
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|....++.|.+.
T Consensus 105 i~TG~Tl~~a~~~L~~~ 121 (183)
T 1hgx_A 105 IDTGLTMYQLLNNLQMR 121 (183)
T ss_dssp ESSSHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 68999999999999764
No 126
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=26.99 E-value=73 Score=24.12 Aligned_cols=48 Identities=2% Similarity=-0.131 Sum_probs=39.1
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.+-|.|.+-|++++..+.+.+... .++.++.=+..++..|.+.|+++.
T Consensus 160 ~~~d~v~ftS~s~v~~~~~~~~~~-----~~~~~~aIG~~Ta~~l~~~G~~v~ 207 (229)
T 3p9z_A 160 KEKSILIFTAISHAKAFLHYFEFL-----ENYTAISIGNTTALYLQEQGIPSY 207 (229)
T ss_dssp CTTCEEEECSHHHHHHHHHHSCCC-----TTCEEEESSHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEECHHHHHHHHHHhCcc-----cCCEEEEECHHHHHHHHHcCCCce
Confidence 455899999999999998877421 267899999999999999898754
No 127
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=26.97 E-value=2.5e+02 Score=22.65 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=37.2
Q ss_pred CCCCCEEEE-CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCC-------------CcccEEE
Q psy481 21 VLNNTAVGI-GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETH-------------PDLSCVI 86 (166)
Q Consensus 21 I~dg~vI~l-dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~-------------~~~D~af 86 (166)
+++|++|.| |+|..=...++..+.+ +-..++++..|..-...+.+.|..++..... ..+|++|
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~---Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLL---GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT---TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC---CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 788986665 5554444444443332 2113555555665555667788764433211 1478888
Q ss_pred Ecccc
Q psy481 87 DGADE 91 (166)
Q Consensus 87 ~gad~ 91 (166)
+.+.+
T Consensus 260 d~~G~ 264 (398)
T 1kol_A 260 DAVGF 264 (398)
T ss_dssp ECCCT
T ss_pred ECCCC
Confidence 86643
No 128
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=26.67 E-value=69 Score=24.36 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=19.8
Q ss_pred ECcChhHHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 29 IGSGSTVVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
++||.|....++.|.++ +..++.+++-
T Consensus 134 l~TG~T~~~a~~~L~~~---G~~~I~~~~l 160 (209)
T 1i5e_A 134 LATGGSAVAAIDALKKR---GAKSIKFMCL 160 (209)
T ss_dssp ESSSHHHHHHHHHHHHT---TCCCEEEECS
T ss_pred CcCHHHHHHHHHHHHHc---CCCEEEEEEE
Confidence 57899999999999875 3345555543
No 129
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=26.66 E-value=77 Score=25.24 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|++ +...++..+..-+.+-..+.++|+.
T Consensus 52 Lt~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 107 (292)
T 3daq_A 52 LTTDEKELILKTVID-LVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPY 107 (292)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 457899999999998 677666677787753 3333333332111133457788764
No 130
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=26.60 E-value=63 Score=24.12 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=35.4
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
.+.++.+|.|..-..+++.|.+. .. ++++..+.+....+. .++.++.
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~----g~-v~vid~~~~~~~~~~-~~~~~i~ 55 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS----EV-FVLAEDENVRKKVLR-SGANFVH 55 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS----EE-EEEESCGGGHHHHHH-TTCEEEE
T ss_pred CCEEEEECCChHHHHHHHHHHhC----Ce-EEEEECCHHHHHHHh-cCCeEEE
Confidence 35689999999999999998653 23 888888887766666 6766554
No 131
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=26.42 E-value=71 Score=24.39 Aligned_cols=52 Identities=10% Similarity=-0.076 Sum_probs=39.8
Q ss_pred CCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 23 NNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 23 dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
+-|.|.+-|++++..|.+.+.+... ...++.++.-+..++..+.+.|++...
T Consensus 185 ~~d~v~ftS~s~v~~~~~~~~~~~~-~l~~~~~~aIG~~Ta~~l~~~G~~~~~ 236 (254)
T 4es6_A 185 RLNGLVVSSGQGLQNLYQLAAADWP-EIGRLPLFVPSPRVAEMARELGAQRVI 236 (254)
T ss_dssp TCCEEECCSHHHHHHHHHHHGGGHH-HHTTSCEEESSHHHHHHHHHTTCSSEE
T ss_pred CCCEEEEcCHHHHHHHHHHhhHHHH-HHhCCeEEEECHHHHHHHHHcCCCceE
Confidence 3589999999999999998864200 012577899999999999999986543
No 132
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=26.23 E-value=60 Score=25.22 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCCEEE----ECcChhHHHHHHHHHHHHhhcCCCeEEEc
Q psy481 21 VLNNTAVG----IGSGSTVVYAVDRLAERIKAEKLKIVCVP 57 (166)
Q Consensus 21 I~dg~vI~----ldsGsT~~~la~~L~~~~~~~~~~ltvVT 57 (166)
+++.++|. |+||.|..+.++.|.++ +..++.+++
T Consensus 134 i~gr~VilvDd~laTG~Tl~~ai~~L~~~---G~~~I~~~~ 171 (221)
T 1o5o_A 134 NDDKEVFLLDPMLATGVSSIKAIEILKEN---GAKKITLVA 171 (221)
T ss_dssp CTTCEEEEECSEESSSHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred cCCCEEEEECCccccHHHHHHHHHHHHHc---CCCEEEEEE
Confidence 34444553 67999999999999875 334565555
No 133
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=26.22 E-value=2.1e+02 Score=22.40 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=31.9
Q ss_pred CCCCCE-EEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCe
Q psy481 21 VLNNTA-VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMV 72 (166)
Q Consensus 21 I~dg~v-I~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~ 72 (166)
+++|++ +.+|+|+.....++.++.. +...+++++.|.+-...+.+.|..
T Consensus 161 ~~~g~~VlV~GaG~~g~~a~~~a~~~---~g~~Vi~~~~~~~r~~~~~~~Ga~ 210 (348)
T 4eez_A 161 VKPGDWQVIFGAGGLGNLAIQYAKNV---FGAKVIAVDINQDKLNLAKKIGAD 210 (348)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT---SCCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCCCCEEEEEcCCCccHHHHHHHHHh---CCCEEEEEECcHHHhhhhhhcCCe
Confidence 788984 4568888888888877653 223566666666555555677753
No 134
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=26.21 E-value=62 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCCEEE----ECcChhHHHHHHHHHHH
Q psy481 22 LNNTAVG----IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 22 ~dg~vI~----ldsGsT~~~la~~L~~~ 45 (166)
++.++|. |+||.|..+.++.|.++
T Consensus 122 ~~r~vilvDd~laTG~T~~~ai~~L~~~ 149 (208)
T 1v9s_A 122 AERRAFLLDPMLATGGSASLALSLLKER 149 (208)
T ss_dssp GGSCEEEECSEESSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCccccHHHHHHHHHHHHHc
Confidence 3445554 67999999999999875
No 135
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=26.07 E-value=52 Score=24.19 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.7
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||.|....++.|.+.
T Consensus 108 i~TG~Tl~~a~~~L~~~ 124 (185)
T 2geb_A 108 IDSGLTLAYLRETLLGR 124 (185)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 68999999999999764
No 136
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=25.71 E-value=68 Score=26.04 Aligned_cols=55 Identities=24% Similarity=0.213 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|++ +...++..+..-+.+-..+.++|+.
T Consensus 72 Ls~~Er~~v~~~~v~-~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~ 127 (315)
T 3si9_A 72 LTHEEHKRIIELCVE-QVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPY 127 (315)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred cCHHHHHHHHHHHHH-HhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 457899999999998 677666777788864 3333333332211123457788755
No 137
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=25.68 E-value=82 Score=25.90 Aligned_cols=56 Identities=25% Similarity=0.264 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...--|..|.|+. +...++..+..-+.+-..+.++|+..
T Consensus 81 Ls~eEr~~vi~~~ve-~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y 137 (343)
T 2v9d_A 81 LGAEERKAIARFAID-HVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYY 137 (343)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSS
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 456899999999998 677555677777753 33333333321111334577887753
No 138
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=25.48 E-value=73 Score=25.65 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChhHH-HHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVV-YAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT~~-~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|.|++.. ..++..+...+.+-..+.++|+.
T Consensus 65 Lt~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~ 120 (304)
T 3l21_A 65 TTDGEKIELLRAVLE-AVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPY 120 (304)
T ss_dssp SCHHHHHHHHHHHHH-HHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 457899999999998 78777778888875433 33333332111133457788765
No 139
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=25.48 E-value=48 Score=25.65 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCCCCEE---EECcChhHHHHH
Q psy481 11 IAAYQAVDDNVLNNTAV---GIGSGSTVVYAV 39 (166)
Q Consensus 11 ~IA~~A~~~~I~dg~vI---~ldsGsT~~~la 39 (166)
.+.+..++.+-++|++| |.|||||.....
T Consensus 200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~ 231 (260)
T 1g60_A 200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAK 231 (260)
T ss_dssp HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHH
Confidence 35555555345789976 679999987643
No 140
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=25.34 E-value=54 Score=24.88 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.9
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|+.+.++.|.+.
T Consensus 128 i~TG~Tl~aa~~~L~~~ 144 (211)
T 1pzm_A 128 VDSAITLQYLMRFMLAK 144 (211)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHhc
Confidence 68999999999999864
No 141
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=25.19 E-value=54 Score=23.62 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.5
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|..+.++.|.+.
T Consensus 130 itTG~Tl~~~~~~L~~~ 146 (175)
T 1vch_A 130 VASGETMRAMEKMVLRA 146 (175)
T ss_dssp ESSSHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHc
Confidence 57999999999999764
No 142
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=24.86 E-value=72 Score=23.18 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.7
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|..+.++.|.+.
T Consensus 106 itTG~Tl~~a~~~L~~~ 122 (181)
T 1ufr_A 106 LYTGRTARAALDALIDL 122 (181)
T ss_dssp ESSSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhc
Confidence 57999999999999865
No 143
>1o4w_A PIN (PILT N-terminus) domain; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS translation; 1.90A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=24.84 E-value=1.8e+02 Score=20.24 Aligned_cols=60 Identities=12% Similarity=0.068 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCC
Q psy481 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETH 79 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~ 79 (166)
.++.+.+ +++.-.++-+..|. -..++..-... +.++||++-+....+...|++++.+...
T Consensus 79 ~~~~~~~-ll~~~~vv~~~~~~-D~~Ila~A~~~------~~~LvT~D~~l~~~a~~~Gv~vi~~~~~ 138 (147)
T 1o4w_A 79 AARFALK-LLEHFEVVETESEG-DPSLIEAAEKY------GCILITNDKELKRKAKQRGIPVGYLKED 138 (147)
T ss_dssp HHHHHHH-HHTTSEEECCSSCS-HHHHHHHHHHH------TCEEECCCHHHHHHHHHTTCCEECCCCC
T ss_pred HHHHHHH-HHhcCcEeeCCCCc-hHHHHHHHHHh------CCEEEECCHHHHHHHHHCCCeEEEecCC
Confidence 4445555 55544555455554 33333322222 5889999988777777779999887654
No 144
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=24.77 E-value=41 Score=25.22 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=27.7
Q ss_pred ECcChhHHHHHHHHHHHHhhcCCCeEEEc--ChHHHHHHHHhCCCeeeeCCC
Q psy481 29 IGSGSTVVYAVDRLAERIKAEKLKIVCVP--TSFQARQLILKNNMVLGDLET 78 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~~~~~~~~ltvVT--nS~~ia~~l~~~~i~v~~l~~ 78 (166)
++||+|+...++.|.+. +...+.+.+ .+-+....+.... .++.+..
T Consensus 130 i~TG~Tl~~a~~~L~~~---ga~~V~v~~~v~~~~~~~~l~~~~-~~v~~~~ 177 (208)
T 1wd5_A 130 VATGASMEAALSVVFQE---GPRRVVVAVPVASPEAVERLKARA-EVVALSV 177 (208)
T ss_dssp BSSCHHHHHHHHHHHTT---CCSEEEEEEEEBCHHHHHHHHTTS-EEEEEEC
T ss_pred ccHHHHHHHHHHHHHHc---CCCEEEEEEEEcCHHHHHHhcccC-cEEEEec
Confidence 57999999999999864 322333322 3444444555555 6665543
No 145
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=24.39 E-value=1.1e+02 Score=25.51 Aligned_cols=54 Identities=9% Similarity=0.004 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
+..+||+++.+.+++ .+...--|..|+|++ +...++..+..-+.+-..+.++|+
T Consensus 109 Ls~eEr~~vi~~~ve-~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlvv~P 163 (360)
T 4dpp_A 109 MSWDEHIMLIGHTVN-CFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 163 (360)
T ss_dssp SCHHHHHHHHHHHHH-HHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 456899999999998 677666777788863 333333333221112235777775
No 146
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=24.13 E-value=67 Score=24.64 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.9
Q ss_pred EECcChhHHHHHHHHHHH
Q psy481 28 GIGSGSTVVYAVDRLAER 45 (166)
Q Consensus 28 ~ldsGsT~~~la~~L~~~ 45 (166)
.|+||.|..+.++.|.++
T Consensus 132 ~laTG~T~~~ai~~L~~~ 149 (208)
T 2ehj_A 132 MLATGGSVIATIDLLKKA 149 (208)
T ss_dssp EESSCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHc
Confidence 368999999999999875
No 147
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=23.73 E-value=80 Score=25.44 Aligned_cols=55 Identities=7% Similarity=0.161 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcChh-HHHHHHHHHHHHhhcCCCeEEEcCh
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST-VVYAVDRLAERIKAEKLKIVCVPTS 59 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGsT-~~~la~~L~~~~~~~~~~ltvVTnS 59 (166)
+..+||+++.+.+++ .+...--|..|+|++ +...++..+..-+.+-..+.++|+.
T Consensus 58 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Py 113 (309)
T 3fkr_A 58 ITDDERDVLTRTILE-HVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPY 113 (309)
T ss_dssp SCHHHHHHHHHHHHH-HHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCHHHHHHHHHHHHH-HhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 457899999999998 676555677777753 3333333332211122457777654
No 148
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=23.62 E-value=2.9e+02 Score=22.30 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCCCEEEE-CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCCC-------------CcccEEE
Q psy481 21 VLNNTAVGI-GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETH-------------PDLSCVI 86 (166)
Q Consensus 21 I~dg~vI~l-dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~~-------------~~~D~af 86 (166)
+++|++|.| |+|..=...++..+.+ +-..++++..|.+-...+.+.|..++..... ..+|++|
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlak~~---Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 183 VKPGSHVYIAGAGPVGRCAAAGARLL---GAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH---TCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc---CCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEE
Confidence 688886554 6655444444444432 2114555655666555667777754433211 1488888
Q ss_pred Ecccc
Q psy481 87 DGADE 91 (166)
Q Consensus 87 ~gad~ 91 (166)
+.+.+
T Consensus 260 d~~g~ 264 (398)
T 2dph_A 260 DAVGF 264 (398)
T ss_dssp ECSCT
T ss_pred ECCCC
Confidence 87653
No 149
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=23.60 E-value=96 Score=21.70 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.4
Q ss_pred CEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcC
Q psy481 25 TAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPT 58 (166)
Q Consensus 25 ~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTn 58 (166)
+++.||+|.+-..+|..|.+. ..+++++..
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~----g~~v~lie~ 32 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARA----GLKVLVLDG 32 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHT----TCCEEEEEC
T ss_pred eEEEECCCHHHHHHHHHHHHC----CCcEEEEeC
Confidence 589999999999999999864 236888853
No 150
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=23.31 E-value=62 Score=24.18 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.7
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||.|....++.|.+.
T Consensus 128 i~TG~Tl~~a~~~L~~~ 144 (205)
T 1yfz_A 128 IDSGLTLAYLRETLLGR 144 (205)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHhc
Confidence 67999999999999764
No 151
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=23.15 E-value=2.7e+02 Score=23.93 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=35.2
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh-------HHHH----HHHHhCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS-------FQAR----QLILKNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS-------~~ia----~~l~~~~i~v~ 74 (166)
.++.++.||+|-+-.++|..|.+. + ..+|++..+ .+.+ ..+.+.|+++.
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~~---g-~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~gv~i~ 344 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLASL---G-GDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFA 344 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT---T-CCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---C-CEEEEEECCcCcCcCCHHHHHHHHHHHHhCCCEEE
Confidence 467899999999999999999864 2 368998763 2222 23456777653
No 152
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=23.09 E-value=1.3e+02 Score=24.19 Aligned_cols=61 Identities=20% Similarity=0.108 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCCC-CEEEECcChh---------------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeee
Q psy481 11 IAAYQAVDDNVLNN-TAVGIGSGST---------------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLG 74 (166)
Q Consensus 11 ~IA~~A~~~~I~dg-~vI~ldsGsT---------------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~ 74 (166)
.+-+.|.+ ++++| |+|=||.-|| +..+++.|.+. ....+.|=|....++..+.+.|..++
T Consensus 39 ~a~~~a~~-~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~---~~~piSIDT~~~~va~aAl~aGa~iI 114 (282)
T 1aj0_A 39 DAVKHANL-MINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQR---FEVWISVDTSKPEVIRESAKVGAHII 114 (282)
T ss_dssp HHHHHHHH-HHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHH---CCCEEEEECCCHHHHHHHHHTTCCEE
T ss_pred HHHHHHHH-HHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhh---cCCeEEEeCCCHHHHHHHHHcCCCEE
Confidence 34445666 78778 6888998666 33444444332 12358899999999998877787765
Q ss_pred e
Q psy481 75 D 75 (166)
Q Consensus 75 ~ 75 (166)
.
T Consensus 115 N 115 (282)
T 1aj0_A 115 N 115 (282)
T ss_dssp E
T ss_pred E
Confidence 4
No 153
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=23.06 E-value=45 Score=25.27 Aligned_cols=52 Identities=10% Similarity=-0.027 Sum_probs=38.6
Q ss_pred CCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeee
Q psy481 24 NTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGD 75 (166)
Q Consensus 24 g~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~ 75 (166)
-|.|.+-|++++..+.+.+.+.....-.+..++.-|..++..+.+.|++.+.
T Consensus 173 ~d~v~ftS~s~v~~~~~~~~~~~~~~l~~~~~~aiG~~ta~~l~~~G~~~~~ 224 (240)
T 3mw8_A 173 IDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVT 224 (240)
T ss_dssp CCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEE
T ss_pred CCEEEEcCHHHHHHHHHHcchHHHHHHhCCCEEEECHHHHHHHHHcCCCceE
Confidence 4899999999999999887532000001577899999999999999986543
No 154
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A
Probab=23.06 E-value=62 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.7
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
|+||.|..++++.|.+.
T Consensus 152 i~TG~Tl~~a~~~L~~~ 168 (233)
T 1fsg_A 152 VDTGFTLTEFGERLKAV 168 (233)
T ss_dssp ESSSHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHhc
Confidence 68999999999999764
No 155
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} SCOP: c.61.1.0
Probab=22.96 E-value=65 Score=24.07 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.4
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||.|...+++.|.++
T Consensus 104 i~TG~Tl~~~~~~l~~~ 120 (186)
T 3o7m_A 104 IDSGLTLHFLKDHFFMH 120 (186)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred eCCcHHHHHHHHHHHhc
Confidence 58999999999998764
No 156
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=22.74 E-value=1.8e+02 Score=22.98 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=36.7
Q ss_pred CCCCCEEEE-CcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeCCC--C-CcccEEEEcccc
Q psy481 21 VLNNTAVGI-GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLET--H-PDLSCVIDGADE 91 (166)
Q Consensus 21 I~dg~vI~l-dsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l~~--~-~~~D~af~gad~ 91 (166)
+++|++|.| |+|..=...++..+.. + ..+++++.|..-...+.+.|...+.-.. . ..+|++|+.+.+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~---G-a~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM---G-AEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT---T-CEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCS
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC---C-CeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCc
Confidence 688986655 6654444444444332 2 2466666565555566777764332111 0 158888886654
No 157
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=22.37 E-value=1.3e+02 Score=22.85 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=31.2
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCC-eEEEcCh--HHHHHHHHhCCCeeeeC
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTS--FQARQLILKNNMVLGDL 76 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~-ltvVTnS--~~ia~~l~~~~i~v~~l 76 (166)
+++-|+|+....++++|.+. ...-. ..||||. ..+...+.++|+++..+
T Consensus 8 vl~sG~g~~~~~~l~~l~~~--~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~ 59 (212)
T 3av3_A 8 VFASGSGTNFQAIVDAAKRG--DLPARVALLVCDRPGAKVIERAARENVPAFVF 59 (212)
T ss_dssp EECCSSCHHHHHHHHHHHTT--CCCEEEEEEEESSTTCHHHHHHHHTTCCEEEC
T ss_pred EEEECCcHHHHHHHHHHHhC--CCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEe
Confidence 35568888888888887642 00112 4578884 34555678899998754
No 158
>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.40.4.14
Probab=22.13 E-value=69 Score=21.90 Aligned_cols=14 Identities=14% Similarity=0.264 Sum_probs=12.1
Q ss_pred CCCCCCEEEECcCh
Q psy481 20 NVLNNTAVGIGSGS 33 (166)
Q Consensus 20 ~I~dg~vI~ldsGs 33 (166)
-|+.||+|.||..|
T Consensus 62 kV~~GDVI~Id~~s 75 (95)
T 2cqa_A 62 KVQAGDVITIDKAT 75 (95)
T ss_dssp TCCTTSEEEEETTT
T ss_pred CceeCCEEEEEccC
Confidence 58999999999865
No 159
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=22.10 E-value=70 Score=23.69 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.0
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||.|...+++.|.+.
T Consensus 105 i~TG~Tl~~~~~~l~~~ 121 (181)
T 2ywu_A 105 VDTGLTLSYLLDYLEAR 121 (181)
T ss_dssp ESSSHHHHHHHHHHHTT
T ss_pred eCChHHHHHHHHHHHhc
Confidence 58999999998888764
No 160
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=21.83 E-value=69 Score=25.67 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEECcCh-hHHHHHHHHHHHHhhcCCCeEEEcChH
Q psy481 4 LVEEAKRIAAYQAVDDNVLNNTAVGIGSGS-TVVYAVDRLAERIKAEKLKIVCVPTSF 60 (166)
Q Consensus 4 ~~~~~K~~IA~~A~~~~I~dg~vI~ldsGs-T~~~la~~L~~~~~~~~~~ltvVTnS~ 60 (166)
+..+||+++.+.+++ .+...--|..|.|+ ++...++..+..-+.+-..+.++|+..
T Consensus 54 Ls~~Er~~v~~~~~~-~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y 110 (300)
T 3eb2_A 54 LGTAQREAVVRATIE-AAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAY 110 (300)
T ss_dssp CCHHHHHHHHHHHHH-HHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCS
T ss_pred cCHHHHHHHHHHHHH-HhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 457899999999998 67655456667765 333333333321111334577777653
No 161
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=21.82 E-value=68 Score=24.63 Aligned_cols=17 Identities=18% Similarity=0.409 Sum_probs=15.3
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
|+||.|..+.++.|.++
T Consensus 131 laTG~T~~~ai~~L~~~ 147 (208)
T 2e55_A 131 LATGGTLEVALREILKH 147 (208)
T ss_dssp ESSSHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 67999999999999875
No 162
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=21.73 E-value=68 Score=23.23 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=15.0
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|..+.++.|.+.
T Consensus 130 itTG~Tl~~~~~~L~~~ 146 (180)
T 1zn8_A 130 LATGGTMNAACELLGRL 146 (180)
T ss_dssp ESSSHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 67999999999999864
No 163
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=21.15 E-value=70 Score=23.46 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=14.8
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|..+.++.|.+.
T Consensus 132 itTG~Tl~~~~~~L~~~ 148 (187)
T 1g2q_A 132 IATGGSAAAAGELVEQL 148 (187)
T ss_dssp ESSCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 67999999999999864
No 164
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=21.14 E-value=94 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.6
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|..+.++.|.+.
T Consensus 127 itTG~Tl~aa~~~L~~~ 143 (186)
T 1l1q_A 127 LATGGTLLAAIELCETA 143 (186)
T ss_dssp ESSSHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 57999999999999764
No 165
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=21.07 E-value=91 Score=23.36 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=30.3
Q ss_pred ECcChhHHHHHHHHHHHHhhcC--CC-eEEEcChHHHHHHHHhCCCeeeeCCC
Q psy481 29 IGSGSTVVYAVDRLAERIKAEK--LK-IVCVPTSFQARQLILKNNMVLGDLET 78 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~~~~~~--~~-ltvVTnS~~ia~~l~~~~i~v~~l~~ 78 (166)
++||+|+...++.|.+. +. -. ++++.-+......+.+.|+++.++-.
T Consensus 121 itTG~Tl~~a~~~L~~~---Ga~~v~~~~l~~~~~~~~~~l~~~g~~v~sl~~ 170 (205)
T 2wns_A 121 VTSGSSVLETVEVLQKE---GLKVTDAIVLLDREQGGKDKLQAHGIRLHSVCT 170 (205)
T ss_dssp ESSSHHHHHHHHHHHHT---TCBCCEEEEEEECCSSHHHHHHTTTCEEEEEEE
T ss_pred ccccHHHHHHHHHHHHC---CCEEEEEEEEEEcCcchHHHHHHcCCeEEEEEE
Confidence 67999999999999864 22 12 33343433344456778888777643
No 166
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=20.92 E-value=86 Score=24.73 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=15.6
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
|+||.|..+.++.|.++
T Consensus 166 laTG~T~~~ai~~L~~~ 182 (243)
T 1bd3_D 166 CATAGSVCKAIEVLLRL 182 (243)
T ss_dssp ESSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHc
Confidence 78999999999999875
No 167
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=20.85 E-value=1.5e+02 Score=22.43 Aligned_cols=47 Identities=17% Similarity=0.182 Sum_probs=31.4
Q ss_pred EEEE--CcChhHHHHHHHHHHHHhhcCC--C-eEEEcChHH--HHHHHHhCCCeeeeC
Q psy481 26 AVGI--GSGSTVVYAVDRLAERIKAEKL--K-IVCVPTSFQ--ARQLILKNNMVLGDL 76 (166)
Q Consensus 26 vI~l--dsGsT~~~la~~L~~~~~~~~~--~-ltvVTnS~~--ia~~l~~~~i~v~~l 76 (166)
++++ |+|+....++++|.+. .. . ..||||..+ ....+.++|+++..+
T Consensus 4 I~vl~SG~g~~~~~~l~~l~~~----~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~ 57 (216)
T 2ywr_A 4 IGVLVSGRGSNLQAIIDAIESG----KVNASIELVISDNPKAYAIERCKKHNVECKVI 57 (216)
T ss_dssp EEEEECSCCHHHHHHHHHHHTT----SSCEEEEEEEESCTTCHHHHHHHHHTCCEEEC
T ss_pred EEEEEeCCcHHHHHHHHHHHhC----CCCCeEEEEEeCCCChHHHHHHHHcCCCEEEe
Confidence 5778 8888888888887642 11 2 467888533 334567899987753
No 168
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.77 E-value=2.3e+02 Score=20.00 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=26.8
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEc-ChHHHHH
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVP-TSFQARQ 64 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVT-nS~~ia~ 64 (166)
+...+.++|.|+ ...+|+++..++..-+.+..+++ ++.....
T Consensus 38 ~a~~I~i~G~G~-S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~ 80 (187)
T 3sho_A 38 RADHVIVVGMGF-SAAVAVFLGHGLNSLGIRTTVLTEGGSTLTI 80 (187)
T ss_dssp HCSEEEEECCGG-GHHHHHHHHHHHHHTTCCEEEECCCTHHHHH
T ss_pred hCCEEEEEecCc-hHHHHHHHHHHHHhcCCCEEEecCCchhHHH
Confidence 345788889887 45678887765544345677777 4444433
No 169
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=20.74 E-value=3.3e+02 Score=23.00 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=35.5
Q ss_pred CCCCEEEECcChhHHHHHHHHHHHHhhcCCCeEEEcCh-------HHHHH----HHHhCCCeee
Q psy481 22 LNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS-------FQARQ----LILKNNMVLG 74 (166)
Q Consensus 22 ~dg~vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS-------~~ia~----~l~~~~i~v~ 74 (166)
.++.++.||+|-+-.++|..|.+. ...+|++..+ .+++. .+.+.|+++.
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~----G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~v~ 268 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGI----GLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFI 268 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHT----TCCEEEEESSCSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHHc----CCeEEEEecccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 467899999999999999999864 2368888753 23332 3567787653
No 170
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=20.71 E-value=2e+02 Score=22.71 Aligned_cols=62 Identities=18% Similarity=0.096 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCCC-CEEEECcChh-------HHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhC--CCeeee
Q psy481 10 RIAAYQAVDDNVLNN-TAVGIGSGST-------VVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKN--NMVLGD 75 (166)
Q Consensus 10 ~~IA~~A~~~~I~dg-~vI~ldsGsT-------~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~--~i~v~~ 75 (166)
..+.+.|.+ +++.| |+|=||.+|+ +..+++.|.+. -...+.|=|....++..+.+. |..++.
T Consensus 34 ~~a~~~a~~-~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~---~~~pisIDT~~~~v~~aal~a~~Ga~iIN 105 (271)
T 2yci_X 34 RPIQEWARR-QAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEV---VDLPCCLDSTNPDAIEAGLKVHRGHAMIN 105 (271)
T ss_dssp HHHHHHHHH-HHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHH---CCCCEEEECSCHHHHHHHHHHCCSCCEEE
T ss_pred HHHHHHHHH-HHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHh---CCCeEEEeCCCHHHHHHHHHhCCCCCEEE
Confidence 345556666 67777 7999999884 44455555442 124688999999998877555 766553
No 171
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=20.68 E-value=2.2e+02 Score=21.96 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=31.2
Q ss_pred EEEE--CcChhHHHHHHHHHHHHhhcCCC-eEEEcChHH--HHHHHHhCCCeeeeC
Q psy481 26 AVGI--GSGSTVVYAVDRLAERIKAEKLK-IVCVPTSFQ--ARQLILKNNMVLGDL 76 (166)
Q Consensus 26 vI~l--dsGsT~~~la~~L~~~~~~~~~~-ltvVTnS~~--ia~~l~~~~i~v~~l 76 (166)
++++ |+|+....+++.|.+. ...-. ..||||..+ ....+.+.|+++..+
T Consensus 25 I~~l~SG~g~~~~~~l~~l~~~--~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~ 78 (229)
T 3auf_A 25 IGVLISGSGTNLQAILDGCREG--RIPGRVAVVISDRADAYGLERARRAGVDALHM 78 (229)
T ss_dssp EEEEESSCCHHHHHHHHHHHTT--SSSEEEEEEEESSTTCHHHHHHHHTTCEEEEC
T ss_pred EEEEEeCCcHHHHHHHHHHHhC--CCCCeEEEEEcCCCchHHHHHHHHcCCCEEEE
Confidence 5666 8888888888887642 00112 467888433 344567899998753
No 172
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=20.59 E-value=3.1e+02 Score=21.44 Aligned_cols=61 Identities=15% Similarity=0.101 Sum_probs=43.1
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCeeeeC------------CCCCcccEEEEcccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL------------ETHPDLSCVIDGADE 91 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~v~~l------------~~~~~~D~af~gad~ 91 (166)
+.+||+|..-..++..|. . + .+++++..+-..+..+.+.|+.+..- .....+|+.|+.+-.
T Consensus 5 I~IiGaGa~G~~~a~~L~-~---g-~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 77 (307)
T 3ego_A 5 IGIIGGGSVGLLCAYYLS-L---Y-HDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ 77 (307)
T ss_dssp EEEECCSHHHHHHHHHHH-T---T-SEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG
T ss_pred EEEECCCHHHHHHHHHHh-c---C-CceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH
Confidence 568899999999999987 4 2 36999988877666666666654321 122368888888655
No 173
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=20.52 E-value=79 Score=23.32 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.1
Q ss_pred ECcChhHHHHHHHHHHH
Q psy481 29 IGSGSTVVYAVDRLAER 45 (166)
Q Consensus 29 ldsGsT~~~la~~L~~~ 45 (166)
++||+|...+++.|.+.
T Consensus 101 i~TG~Tl~~~~~~l~~~ 117 (177)
T 3ohp_A 101 IDTGNTLNKVKEILALR 117 (177)
T ss_dssp ESSCHHHHHHHHHHHTT
T ss_pred eCcHHHHHHHHHHHHhc
Confidence 57999999999988754
No 174
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=20.50 E-value=59 Score=26.17 Aligned_cols=27 Identities=19% Similarity=-0.092 Sum_probs=18.4
Q ss_pred HHHHHHhcCCCCCCEE---EECcChhHHHH
Q psy481 12 AAYQAVDDNVLNNTAV---GIGSGSTVVYA 38 (166)
Q Consensus 12 IA~~A~~~~I~dg~vI---~ldsGsT~~~l 38 (166)
+.+..++.+-++||+| |.|||||..+.
T Consensus 241 l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa 270 (323)
T 1boo_A 241 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVA 270 (323)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHH
Confidence 4444444245789988 68999988663
No 175
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=20.30 E-value=1e+02 Score=23.97 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCCCCEE---EECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHH
Q psy481 21 VLNNTAV---GIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLI 66 (166)
Q Consensus 21 I~dg~vI---~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l 66 (166)
|+||++| |-|+|+++.++++..... -.+..|=.|......+
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~-----G~V~avD~s~~~~~~l 118 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPR-----GRIYGVEFAPRVMRDL 118 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTT-----CEEEEEECCHHHHHHH
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCC-----ceEEEEeCCHHHHHHH
Confidence 7999953 455667888888887542 1366777777765544
No 176
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Probab=20.16 E-value=2.8e+02 Score=20.87 Aligned_cols=61 Identities=15% Similarity=0.116 Sum_probs=41.3
Q ss_pred EEEECcChhHHHHHHHHHHHHhhcCCCeEEEcChHHHHHHHHhCCCe--ee-eCCCCCcccEEEEccc
Q psy481 26 AVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMV--LG-DLETHPDLSCVIDGAD 90 (166)
Q Consensus 26 vI~ldsGsT~~~la~~L~~~~~~~~~~ltvVTnS~~ia~~l~~~~i~--v~-~l~~~~~~D~af~gad 90 (166)
+-+||.|..-..+++.|... + .+++++..+.+.+..+.+.|+. .. .+.+....|+.|+.+-
T Consensus 3 i~iiG~G~~G~~~a~~l~~~---g-~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~vi~av~ 66 (279)
T 2f1k_A 3 IGVVGLGLIGASLAGDLRRR---G-HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP 66 (279)
T ss_dssp EEEECCSHHHHHHHHHHHHT---T-CEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC
T ss_pred EEEEcCcHHHHHHHHHHHHC---C-CEEEEEECCHHHHHHHHhCCCCccccCCHHHhCCCCEEEEECC
Confidence 45799999999999998753 2 2587887777776666666653 21 2222236788888764
Done!