RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy481
(166 letters)
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 182 bits (464), Expect = 6e-59
Identities = 67/137 (48%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 8 AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLIL 67
KR AA AVD V + +G+G+GSTV Y ++ L ER++ E L IV VPTSFQ +L
Sbjct: 1 LKRAAARAAVDY-VEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQTEELAR 59
Query: 68 KNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTK 127
+ + L DL+ P L IDGADEVD +L LIKGGGG L +EKIVAS K ++IAD +K
Sbjct: 60 ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119
Query: 128 QSKNLGDRYKKGIPIEV 144
+ LG + +P+EV
Sbjct: 120 LVERLG---EFPLPVEV 133
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 169 bits (430), Expect = 7e-54
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 3/136 (2%)
Query: 9 KRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILK 68
+ AA +A + V + VG+G+GSTV Y ++ L ER+K E L IV VPTS Q +L +
Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGLDIVGVPTSKQTAELARE 60
Query: 69 NNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQ 128
+ L L+ P+L IDGADEVD NL LIKGGGG L +EKIVAS + + ++IAD +K
Sbjct: 61 LGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKL 120
Query: 129 SKNLGDRYKKGIPIEV 144
LG K +P+EV
Sbjct: 121 VDKLG---KFPLPVEV 133
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 156 bits (398), Expect = 7e-49
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 5/142 (3%)
Query: 3 NLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQA 62
+E K+ AA A++ V + +G+G+GST Y ++ L R+K E L I VPTSFQ
Sbjct: 1 MDQDELKKAAAKAALEY-VKDGMVIGLGTGSTAAYFIEALGRRVKGE-LDIGGVPTSFQT 58
Query: 63 RQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVII 122
+L + + + L L IDGADEVD NL LIKGGGG L +EKIVAS + ++I
Sbjct: 59 EELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVI 118
Query: 123 ADHTKQSKNLGDRYKKGIPIEV 144
D +K + LG K +P+EV
Sbjct: 119 VDESKLVEVLG---KFPLPVEV 137
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 147 bits (373), Expect = 5e-45
Identities = 58/140 (41%), Positives = 80/140 (57%), Gaps = 5/140 (3%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64
+E K+ AA A + V + VG+G+GST Y +D L ER+K L I VPTS + +
Sbjct: 3 QDELKKAAAEAAAE-YVEDGMIVGLGTGSTAAYFIDALGERVKEG-LIIGGVPTSEASTE 60
Query: 65 LILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
L + + L DL L +DGADE+D +L LIKGGG LT+EKIVA+ + + I D
Sbjct: 61 LAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVD 120
Query: 125 HTKQSKNLGDRYKKGIPIEV 144
+K LG K +P+EV
Sbjct: 121 ESKLVDVLG---KFPLPVEV 137
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 122 bits (309), Expect = 5e-36
Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 53 IVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIV 112
IV VPTSFQ +L + + L DL+ +L IDGADEVD NL LIKGGGG L +EKIV
Sbjct: 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIV 60
Query: 113 ASCTPKLVIIADHTKQSKNLGDRYKKGIPIEV 144
AS K ++I D +K LG K +P+EV
Sbjct: 61 ASAAKKFIVIVDESKLVDVLG---KFPLPVEV 89
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 112 bits (281), Expect = 5e-31
Identities = 59/140 (42%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTSFQARQ 64
+E K+IAAY+AV+ V + +G+G+GST +AVDR+ E ++ KLK I+ +PTS + +
Sbjct: 33 DELKKIAAYKAVE-FVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKTHE 91
Query: 65 LILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
+ + L DL++HP + IDGADEVD NL L+KG GG L +EK++ K V+I D
Sbjct: 92 QAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVD 151
Query: 125 HTKQSKNLGDRYKKGIPIEV 144
+K K++G +P+EV
Sbjct: 152 ESKLVKHIGGS-GLAMPVEV 170
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 85.2 bits (211), Expect = 5e-21
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 16/133 (12%)
Query: 19 DNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTS----FQARQL---ILKNNM 71
+ + +GIG+GST+ + ++A+ IK I V TS F A++L I + N
Sbjct: 17 SQINGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNKIAFLAKELGIKICEIND 76
Query: 72 VLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKN 131
V H DL+ IDGADEVD +L +IKGGGG L +EK++ + V++ D TK +
Sbjct: 77 V-----DHIDLA--IDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQY 129
Query: 132 LGDRYKKGIPIEV 144
LG+ +K +P+EV
Sbjct: 130 LGETFK--LPVEV 140
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 30.7 bits (70), Expect = 0.29
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
E+A A A ++ +L VGI SG+ V A +LA+R++ IV + R L
Sbjct: 240 EDAIETARRLAREEGIL----VGISSGA-AVAAALKLAKRLENADKVIVAILPDTGERYL 294
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 30.4 bits (69), Expect = 0.32
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
EEA A A ++ +L VGI SG+ V A +LA+R + +KL IV + S R L
Sbjct: 240 EEAIETARRLAAEEGIL----VGISSGAAV-AAALKLAKRPEPDKL-IVVILPSTGERYL 293
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 30.2 bits (69), Expect = 0.33
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 31 SGSTVVYAVDRLAERIKAEKLKIVCV 56
+G + + A+D L +R + +K+V +
Sbjct: 136 TGGSAIAAIDLLKKRGGPKNIKVVSL 161
>gnl|CDD|235168 PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.
Length = 410
Score = 29.9 bits (68), Expect = 0.53
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 2 TNLVEE-AKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKI 53
T+L+EE K + +++ + V+ +GIG S V A+ + K K ++
Sbjct: 42 TSLIEESLKFVKDKESIKNIVV----IGIGGSSLGVKAIYSFLKNEKNNKKEL 90
>gnl|CDD|217959 pfam04198, Sugar-bind, Putative sugar-binding domain. This
probable domain is found in bacterial transcriptional
regulators such as DeoR and SorC. These proteins have
an amino-terminal helix-turn-helix pfam00325 that binds
to DNA. This domain is probably the ligand regulator
binding region. SorC is regulated by sorbose and other
members of this family are likely to be regulated by
other sugar substrates.
Length = 255
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 11 IAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC 55
AA Q + + + VG+G G T+ + L +K V
Sbjct: 40 RAAAQYLSSLLKDGDVVGVGWGRTLSAVAEAL-TPKSLRDVKFVP 83
>gnl|CDD|233418 TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This
model describes a family similar to RecD, the
exodeoxyribonuclease V alpha chain of TIGR01447. Members
of this family, however, are not found in a context of
RecB and RecC and are longer by about 200 amino acids at
the amino end. Chlamydia muridarum has both a member of
this family and a RecD [Unknown function, Enzymes of
unknown specificity].
Length = 720
Score = 28.2 bits (63), Expect = 2.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSG-STVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64
E ++ A A+ V+ T G G+G +T+ A+ LAE + + PT A++
Sbjct: 325 SEEQKQALDTAIQHKVVILTG-GPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR 383
Query: 65 L 65
L
Sbjct: 384 L 384
>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
protein; Provisional.
Length = 391
Score = 27.8 bits (62), Expect = 2.6
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 2 TN--LVEEAKRIAAYQAVDDNVLNNTAVGIGSGST----VVYAVDRLAERIKAEKLKIVC 55
TN L+ A ++ YQ++ D L +GS + V A DRLA + LKIV
Sbjct: 35 TNPSLITAAAQMPQYQSIVDETLRQARKELGSDAPVEDVVALAFDRLAVAFGLKILKIVP 94
Query: 56 --VPTSFQAR 63
V T AR
Sbjct: 95 GRVSTEVDAR 104
>gnl|CDD|183458 PRK12346, PRK12346, transaldolase A; Provisional.
Length = 316
Score = 27.4 bits (61), Expect = 3.6
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 2 TN--LVEEAKRIAAYQA-VDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC--V 56
TN L+ +A + YQ +DD + G VV A D+LA AE LK V V
Sbjct: 33 TNPSLLLKAAGLPQYQHLIDDAIAWGKKQGGTQEQQVVAACDKLAVNFGAEILKSVPGRV 92
Query: 57 PTSFQAR 63
T AR
Sbjct: 93 STEVDAR 99
>gnl|CDD|235547 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
Length = 292
Score = 27.5 bits (62), Expect = 3.6
Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 19/75 (25%)
Query: 8 AKRIAAYQA---VDDNV------LNNTAVGI---------GS-GSTVVYAVDRLAERIKA 48
R+ A Q + D V + V + GS GS V + R ER
Sbjct: 95 KDRLKAAQKKTGLKDAVVTGKGTIEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIE 154
Query: 49 EKLKIVCVPTSFQAR 63
EK +V S AR
Sbjct: 155 EKCPLVIFSASGGAR 169
>gnl|CDD|177238 MTH00189, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 260
Score = 27.2 bits (61), Expect = 3.8
Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 7/26 (26%)
Query: 20 NVLN-------NTAVGIGSGSTVVYA 38
LN NTAV + SG TV +A
Sbjct: 121 EPLNPFEVPLLNTAVLLSSGVTVTWA 146
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 26.9 bits (59), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 VGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTS 59
+G+G+GST Y L E++K ++ IV PT
Sbjct: 24 IGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTD 57
>gnl|CDD|179812 PRK04293, PRK04293, adenylosuccinate synthetase; Provisional.
Length = 333
Score = 26.8 bits (60), Expect = 5.8
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 15/66 (22%)
Query: 7 EAK-RIAAYQAVDDN--VLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF--- 60
E K +I AY A+ D ++ VG +G TV Y +K + +P+ F
Sbjct: 14 EGKGKIIAYLALKDKPSIIARGGVGPNAGHTVEYN---------GKKYGLRMIPSGFVNK 64
Query: 61 QARQLI 66
A+ I
Sbjct: 65 DAKLAI 70
>gnl|CDD|235486 PRK05472, PRK05472, redox-sensing transcriptional repressor Rex;
Provisional.
Length = 213
Score = 26.2 bits (59), Expect = 7.2
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 27 VGIGSGSTVVYAVDRLAERIKAEKLKIV--CVP 57
+G G VY +D L E +K ++I VP
Sbjct: 123 IGTKIGGIPVYHIDELEEVVKENDIEIGILTVP 155
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 26.2 bits (59), Expect = 7.5
Identities = 8/25 (32%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 32 GSTVVYAVDRLAERIKAEKLKIVCV 56
G + + A+D L +R A+ +K++C+
Sbjct: 137 GGSAIAAIDLLKKR-GAKNIKVLCL 160
>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit.
Length = 81
Score = 25.1 bits (55), Expect = 8.0
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAE 49
M L+ A IAA AV L + G+G G+ AV+ +A + +AE
Sbjct: 1 MNPLISAASVIAAGLAVG---LASIGPGVGQGTAAGQAVEGIARQPEAE 46
>gnl|CDD|188644 cd00957, Transaldolase_TalAB, Transaldolases including both TalA
and TalB. Transaldolases including both TalA and TalB.
The enzyme catalyses the reversible transfer of a
dyhydroxyacetone moiety, derived from
fructose-6-phosphate to erythrose-4-phosphate yielding
sedoheptulose-7-phosphate and
glyceraldehyde-3-phosphate. The catalytic mechanism is
similar to other class I aldolases. The enzyme is found
in the non-oxidative branch of the pentose phosphate
pathway and forms a dimer in solution.
Length = 313
Score = 26.4 bits (59), Expect = 8.9
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 2 TN--LVEEAKRIAAYQ-AVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIV 54
TN L+ A ++ Y VD+ + G + A+D+L E LK++
Sbjct: 32 TNPSLILAAAKLPEYNKLVDEAIAYAKKKGGSDEDQISNALDKLLVNFGTEILKLI 87
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.135 0.381
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,481,820
Number of extensions: 778881
Number of successful extensions: 771
Number of sequences better than 10.0: 1
Number of HSP's gapped: 763
Number of HSP's successfully gapped: 46
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.1 bits)