RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy481
(166 letters)
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 193 bits (493), Expect = 6e-63
Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 8/152 (5%)
Query: 1 MTNLVEEAKRIAAYQAVDDN--VLNNTAVGIGSGSTVVYAVDRLAERIKAEK-----LKI 53
+ N +E+AKR AAY+AVD+N ++ +GIGSGSTVVY +R+ + + K K
Sbjct: 14 LGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKF 73
Query: 54 VCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVA 113
+C+PT FQ+R LIL N + LG +E +P + DGADEVDENL LIKGGG CL QEK+V+
Sbjct: 74 ICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVS 133
Query: 114 SCTPKLVIIADHTKQS-KNLGDRYKKGIPIEV 144
+ +++AD K+S K+LG +++G+PIE+
Sbjct: 134 TSAKTFIVVADSRKKSPKHLGKNWRQGVPIEI 165
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium; 2.09A {Plasmodium falciparum}
Length = 244
Score = 192 bits (490), Expect = 8e-63
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTS 59
+ ++ K+I AY+AVD+ V +N +G+G+GSTV Y ++R+ +K+ KLK +VC+PTS
Sbjct: 5 HHHHMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTS 64
Query: 60 FQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKL 119
K + L LE H ++ IDG DE+D NL LIKG GG L +EK+VAS + L
Sbjct: 65 IDTELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLL 124
Query: 120 VIIADHTKQSKN-LGDRYKKGIPIEV 144
+II D +K N LG +PIE+
Sbjct: 125 IIIGDESKLCTNGLG--MTGAVPIEI 148
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 183 bits (467), Expect = 2e-59
Identities = 49/140 (35%), Positives = 74/140 (52%), Gaps = 4/140 (2%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64
+EE K+IA +A V + VG+G+GST Y V+ + R++ E L+++ V TS +
Sbjct: 1 MEELKKIAGVRAAQ-YVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRTTA 59
Query: 65 LILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
+ L ++ + +DGADEVD N IKGGGG L EKIV + T + + D
Sbjct: 60 QAQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVD 119
Query: 125 HTKQSKNLGDRYKKGIPIEV 144
+K LG +P+EV
Sbjct: 120 ESKMVDTLG---AFRLPVEV 136
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 182 bits (463), Expect = 2e-58
Identities = 62/144 (43%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60
M V++ K++AA +A++ V ++ +GIGSGSTV + L ER+ L++ CV TS
Sbjct: 22 MN--VQQLKKMAALKALE-FVEDDMRLGIGSGSTVNEFIPLLGERVA-NGLRVTCVATSQ 77
Query: 61 QARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLV 120
+ QL K + + LE P+L IDGADE+ + LIKGGGG L EKIVAS + +
Sbjct: 78 YSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMF 137
Query: 121 IIADHTKQSKNLGDRYKKGIPIEV 144
+IAD TK K LG +PIEV
Sbjct: 138 VIADETKMVKTLG---AFALPIEV 158
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 178 bits (455), Expect = 1e-57
Identities = 54/145 (37%), Positives = 84/145 (57%), Gaps = 6/145 (4%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEK-LKIVCVPTS 59
M VEE K+IAA +A+ + ++ +G+G+GST Y + L E++K + IV VPTS
Sbjct: 1 MN--VEEMKKIAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTS 57
Query: 60 FQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKL 119
+QA+ L +++++ + L+ + +DGADEVD NL LIKG G LT EKI+
Sbjct: 58 YQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTF 117
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEV 144
+++ D K L + +PIEV
Sbjct: 118 IVLVDERKLVDYLCQKM--PVPIEV 140
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 178 bits (454), Expect = 1e-57
Identities = 58/145 (40%), Positives = 83/145 (57%), Gaps = 6/145 (4%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTS 59
M +E K+ AA+ A+ V + VG+G+GST YAV LA R++ +LK +V VPTS
Sbjct: 1 MERPLESYKKEAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTS 59
Query: 60 FQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKL 119
+L + + L DL + IDGADE+ L LIKG GG L +EKIV +
Sbjct: 60 RATEELAKREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEF 118
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEV 144
++IADHTK+ LG + +P+E+
Sbjct: 119 IVIADHTKKVPVLG---RGPVPVEI 140
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 176 bits (449), Expect = 1e-56
Identities = 59/145 (40%), Positives = 88/145 (60%), Gaps = 7/145 (4%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60
M+N E+ K A +AV V + +G+G+GST + L RI+ E+L + +PTSF
Sbjct: 1 MSN--EDLKLKVAKEAVK-LVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSF 57
Query: 61 QARQLILKNNMVLGDLETHPDLSCVIDGADEVDE-NLVLIKGGGGCLTQEKIVASCTPKL 119
+A+ L ++ + L L+ + D+ DGADEV+E L LIKGGGGC TQEKIV +
Sbjct: 58 EAKMLAMQYEIPLVTLDEY-DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEF 116
Query: 120 VIIADHTKQSKNLGDRYKKGIPIEV 144
V++ D +K K LG+++ IP+EV
Sbjct: 117 VVLVDESKLVKKLGEKFP--IPVEV 139
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 171 bits (437), Expect = 5e-55
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 9/144 (6%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60
MT +E K+ + A+ V T VG+G+GST + +D L + V +S
Sbjct: 1 MT--QDELKKAVGWAALQ-YVQPGTIVGVGTGSTAAHFIDALGTM---KGQIEGAVSSSD 54
Query: 61 QARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLV 120
+ + + + + DL L +DGADE++ ++ +IKGGG LT+EKI+AS K +
Sbjct: 55 ASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFI 114
Query: 121 IIADHTKQSKNLGDRYKKGIPIEV 144
IAD +KQ LG K +P+EV
Sbjct: 115 CIADASKQVDILG---KFPLPVEV 135
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 162 bits (412), Expect = 4e-51
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 6 EEAKRIAAYQA---VDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQA 62
+E KR+ A V DNV +G+G+GST +D LA V +S
Sbjct: 12 DELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAVKDRY---RGAVSSSVAT 68
Query: 63 RQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVII 122
+ + + + + DL L +DGADE+DE+ +IKGGGG LT+EKIVAS V I
Sbjct: 69 TERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAETFVCI 128
Query: 123 ADHTKQSKNLGDRYKKGIPIEV 144
AD +K+ LG + +P+EV
Sbjct: 129 ADASKRVAMLG---QFPLPVEV 147
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 161 bits (409), Expect = 8e-51
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 8/144 (5%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60
M E K++AA A+ V + VG+GSGSTV ++ L + V S
Sbjct: 1 MN--QLEMKKLAAQAALQ-YVKADRIVGVGSGSTVNCFIEALGTI---KDKIQGAVAASK 54
Query: 61 QARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLV 120
++ +L+ K + + + L +DGADE++ ++IKGGG LT+EKIVA+ K +
Sbjct: 55 ESEELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFI 114
Query: 121 IIADHTKQSKNLGDRYKKGIPIEV 144
I D +KQ LG + +P+EV
Sbjct: 115 CIVDSSKQVDVLGSTFP--LPVEV 136
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 160 bits (407), Expect = 2e-50
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 7/144 (4%)
Query: 1 MTNLVEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSF 60
N +E K++AA +A ++ +G+G+GSTV + ++ L V +S
Sbjct: 5 KKNNQDELKKLAATEAAK-SITTEITLGVGTGSTVGFLIEELVNY---RDKIKTVVSSSE 60
Query: 61 QARQLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLV 120
+ + + + DL ++ IDGADE + + LIKGGG LT+EKI + K +
Sbjct: 61 DSTRKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFI 120
Query: 121 IIADHTKQSKNLGDRYKKGIPIEV 144
I D +K+ LG +PIEV
Sbjct: 121 CIIDESKKVNTLG---NFPLPIEV 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 4e-05
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 3 NLVEEAKRIAAY--QAVDDNVLNNTAVGIGSGSTVVYAVDRLAE---RIKAEKLKIVCVP 57
+VE + + + V+ NV N V +G A+D + IK +K+ I+ +
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYV-A-AGDLR--ALDTVTNVLNFIKLQKIDIIELQ 1883
Query: 58 TSFQARQL 65
S ++
Sbjct: 1884 KSLSLEEV 1891
Score = 30.8 bits (69), Expect = 0.21
Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 46/149 (30%)
Query: 29 IGSGSTVVYAVDRLAERIKAEKLKIVC-VPTS---------FQARQLILKNNMVLGDLET 78
IG Y L I + L+ VP+ Q + + K N L
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GK 364
Query: 79 HPDLSCVIDGADEVDENLVLIKGG------GGCLTQEKIVASCTPKLVIIADHTKQSK-- 130
++S +++GA NLV+ G G LT K A QS+
Sbjct: 365 QVEIS-LVNGAK----NLVV--SGPPQSLYGLNLTLRKAKAP---------SGLDQSRIP 408
Query: 131 ------NLGDRYKKGIPIEVSYHTVPPIL 153
+R+ +P+ +H+ +L
Sbjct: 409 FSERKLKFSNRF---LPVASPFHS--HLL 432
Score = 27.7 bits (61), Expect = 2.1
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 28/111 (25%)
Query: 4 LVEEAKR-IAAYQAVDDNVLNNTAVGIGS---GSTVVY----AVDRLAERIKAEKLKIVC 55
+V R + AV + L + G+ + G A+ + ER+ +V
Sbjct: 1785 VV--FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 56 V-----PTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDE-NLVLIK 100
+ Q + GDL L V + + + + +I+
Sbjct: 1843 IVNYNVENQ----QYV-----AAGDLR---ALDTVTNVLNFIKLQKIDIIE 1881
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.001
Identities = 27/138 (19%), Positives = 45/138 (32%), Gaps = 27/138 (19%)
Query: 42 LAERIKAEKLKI---VCVPTSFQA-----RQLIL---KN--NMVLGDLETHPDLSCVIDG 88
L + L + V ++ A + L+ K + + TH L
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 89 ADEVDENLVL----IKGGGGCLTQEKIVASCTPKLV-IIADHTKQSKNLGDRYKK----- 138
DE L + L +E V + P+ + IIA+ + D +K
Sbjct: 298 LTP-DEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 139 -GIPIEVSYHTVPPILYR 155
IE S + + P YR
Sbjct: 355 LTTIIESSLNVLEPAEYR 372
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich,
rossmann-like fold, structural genomics, PSI-2, protein
structure initiative; HET: MSE G3H; 1.65A {Bacillus
subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A*
3bxh_A*
Length = 255
Score = 31.3 bits (71), Expect = 0.098
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVC 55
AA + V + G+T+ + + K +L V
Sbjct: 45 AAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVP 88
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center
for structural genomics of infectious diseases, csgid,
transcription; HET: MSE; 2.00A {Shigella flexneri 2A}
SCOP: c.124.1.8
Length = 266
Score = 30.2 bits (68), Expect = 0.26
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQAR 63
Q +D + VG G V V+ L + ++ +L V + +
Sbjct: 49 HGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGK 100
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.36
Identities = 9/35 (25%), Positives = 10/35 (28%), Gaps = 16/35 (45%)
Query: 127 KQS-KNLGDRYKKGIPIEVSYHTVPPILYRSGSGP 160
KQ+ K L K LY S P
Sbjct: 19 KQALKKLQASLK---------------LYADDSAP 38
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich,
DNA-binding, transcription regulation; HET: MES; 1.83A
{Citrobacter freundii} PDB: 3kot_A
Length = 219
Score = 28.8 bits (65), Expect = 0.62
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 25/98 (25%)
Query: 39 VDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDL-ETHPDLSCVID--------GA 89
+DR A + EKLKI V T F L L D ++P + I A
Sbjct: 2 LDRFATKQTQEKLKIGVVGT-FAIGCLFPL----LSDFKRSYPHIDLHISTHNNRVDPAA 56
Query: 90 DEVDENLVLIKGGGG--------CLTQEKIVASCTPKL 119
+ +D I+ GGG L + C+P L
Sbjct: 57 EGLD---YTIRYGGGAWHDTDAQYLCSALMSPLCSPTL 91
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 28.0 bits (63), Expect = 1.4
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 12/44 (27%)
Query: 53 IVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENL 96
+ + T F + + PD S +IDG V + L
Sbjct: 106 TLAIQTPFANPK------------DLEPDFSALIDGIRNVGKYL 137
>2zkt_A 2,3-bisphosphoglycerate-independent phosphoglycer mutase;
phosphonopyruvate decarboxylase, isomerase, structural
genom NPPSFA; 2.40A {Pyrococcus horikoshii}
Length = 412
Score = 27.3 bits (60), Expect = 3.2
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 16/47 (34%)
Query: 119 LVIIADHTKQSKNLGDRYKKGIPIEVSYHT---VPPILYRSGSGPDG 162
+ I DH P EV H+ VP ++ G D
Sbjct: 341 IAITGDH-------------STPCEVMNHSGDPVPLLIAGGGVRTDD 374
>2vha_A Periplasmic binding transport protein; periplasmic binding
protein, ligand binding, ultrahigh resolution; HET:
GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Length = 287
Score = 26.9 bits (60), Expect = 3.5
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 30 GSGSTVVYAVD---RLAERIKAE----KLKIVCVPTSFQARQLILKNNMVLGDLE 77
V Y+ D + E +K + L++ +P + Q R +L+N D E
Sbjct: 35 NQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTF--DFE 87
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 27.0 bits (59), Expect = 3.6
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 16/47 (34%)
Query: 119 LVIIADHTKQSKNLGDRYKKGIPIEVSYHT---VPPILYRSGSGPDG 162
+ + DH P H+ VP + Y G DG
Sbjct: 336 ICVTGDH-------------STPCSFKDHSGDPVPIVFYTDGVMNDG 369
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 26.8 bits (60), Expect = 4.3
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 12/44 (27%)
Query: 53 IVCVPTSFQARQLILKNNMVLGDLETHPDLSCVIDGADEVDENL 96
I+ VPT D D+S V+ D + L
Sbjct: 88 IIAVPTPNN------------DDQYRSCDISLVMRALDSILPFL 119
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799,
streptococcus pneumonia PSI, protein structure
initiative; 1.65A {Streptococcus pneumoniae} SCOP:
c.124.1.8
Length = 266
Score = 25.9 bits (57), Expect = 6.5
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
A + + + +N +G G ++ VD + + +
Sbjct: 46 VAAGVLRNLIDDNMKIGFSWGKSLSNLVDLI-HSKSVRNVHFYPL 89
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate,
transport, ABC transport, virulence factor, receptor;
1.49A {Campylobacter jejuni}
Length = 259
Score = 25.8 bits (57), Expect = 7.8
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 30 GSGSTVVYAVD---RLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLE 77
+G + VD LA+ I + KI V + + R +L N V D
Sbjct: 57 ATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV--DAV 105
>3kv1_A Transcriptional repressor; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative, midwest center
for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio
fischeri}
Length = 267
Score = 25.6 bits (56), Expect = 8.3
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
+++N+ AV +G G V D + + V
Sbjct: 44 LVSSYLNNNLQEGMAVAVGQGQNVAAVADHA-GIVTQRNARFVSA 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.381
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,597,330
Number of extensions: 155582
Number of successful extensions: 538
Number of sequences better than 10.0: 1
Number of HSP's gapped: 514
Number of HSP's successfully gapped: 35
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.1 bits)