RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy481
(166 letters)
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 105 bits (264), Expect = 1e-30
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 6/118 (5%)
Query: 27 VGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVI 86
VG+G+GST + +D L + V +S + + + + + DL L +
Sbjct: 2 VGVGTGSTAAHFIDALGTM---KGQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYV 58
Query: 87 DGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADHTKQSKNLGDRYKKGIPIEV 144
DGADE++ ++ +IKGGG LT+EKI+AS K + IAD +KQ L +G + +
Sbjct: 59 DGADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILA---NRGADVAL 113
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Thermus thermophilus
[TaxId: 274]}
Length = 151
Score = 100 bits (250), Expect = 3e-28
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 5/150 (3%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64
+E K+ AA+ A+ V + VG+G+GST YAV LA R++ +LK V + +A +
Sbjct: 3 LESYKKEAAHAAIA-YVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATE 61
Query: 65 LILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIAD 124
+ K + + IDGADE+ L LIKG GG L +EKIV + ++IAD
Sbjct: 62 ELAKREGIPLVDLPPEGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIAD 121
Query: 125 HTKQSKNLGDRYKKGIPIEV----SYHTVP 150
HTK+ L + +P
Sbjct: 122 HTKKVPVLLFVGMATRALVAGPFGVEELLP 151
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 92.5 bits (229), Expect = 3e-25
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 5 VEEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK-IVCVPTSFQAR 63
VEE K+IAA +A+ + ++ +G+G+GST Y + L E++K ++ IV VPTS+QA+
Sbjct: 3 VEEMKKIAAKEALK-FIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAK 61
Query: 64 QLILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIA 123
L +++++ + L+ + +DGADEVD NL LIKG G LT EKI+ +++
Sbjct: 62 LLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLV 121
Query: 124 DHTKQSKNLGDRYKKGIPIEVSYHTV 149
D K L I I + V
Sbjct: 122 DERKLVDYLD---IADIVIVGTREGV 144
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Haemophilus
influenzae [TaxId: 727]}
Length = 147
Score = 77.5 bits (190), Expect = 2e-19
Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQL 65
E K++AA A+ V + VG+GSGSTV ++ L + V S ++ +L
Sbjct: 4 LEMKKLAAQAALQ-YVKADRIVGVGSGSTVNCFIEALGTI---KDKIQGAVAASKESEEL 59
Query: 66 ILKNNMVLGDLETHPDLSCVIDGADEVDENLVLIKGGGGCLTQEKIVASCTPKLVIIADH 125
+ K + + + L +DGADE++ ++IKGGG LT+EKIVA+ K + I D
Sbjct: 60 LRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDS 119
Query: 126 TKQSKNLGDRYKKGIPIEVSYHTVPPI 152
+KQ L + I + I
Sbjct: 120 SKQVDVLFALRGADVVIVGTPEGAKVI 146
>d1lbva_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 252
Score = 30.0 bits (66), Expect = 0.10
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 2 TNLVEEAKRIA--AYQAVDDNVLNNTA--VGIGSGSTVVYAVDRLAERIKAEKLK 52
+ + ++ IA +A+ L VG+G T A DR+AE E L+
Sbjct: 4 RDALRISREIAGEVRKAIASMPLRERVKDVGMGKDGTPTKAADRVAEDAALEILR 58
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator
CggR {Bacillus subtilis [TaxId: 1423]}
Length = 250
Score = 29.2 bits (65), Expect = 0.20
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
AA + V + G+T+ + + K +L V
Sbjct: 42 AAVACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPA 86
>d1g0ha_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 252
Score = 28.9 bits (63), Expect = 0.27
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 6 EEAKRIA--AYQAVDD---NVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK 52
E K IA + + + VG D+++E I + LK
Sbjct: 5 EIGKNIAKEIEKEILPYFGRKDKSYVVGTSPSGDETEIFDKISEDIALKYLK 56
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 28.4 bits (63), Expect = 0.39
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 12 AAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
Q +D + VG G V V+ L + ++ +L V +
Sbjct: 38 HGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPI 82
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 28.2 bits (62), Expect = 0.46
Identities = 23/135 (17%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 29 IGSGS--TVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLETHPDLSCVI 86
IG G+ V+ A + +K + S + VL L HP++ ++
Sbjct: 18 IGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL 77
Query: 87 DGADEVDENLVLIKG--GGGCLTQEKIVASCTPKLVIIADHTKQSKNLGD----RYKKGI 140
GA E L L G L + A + L + +
Sbjct: 78 -GACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADV 136
Query: 141 PIEVSYHTVPPILYR 155
+ Y + ++R
Sbjct: 137 ARGMDYLSQKQFIHR 151
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 27.1 bits (59), Expect = 1.2
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 6 EEAKRIAAYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
EEA A D ++ +G G V A+ + A E V V
Sbjct: 320 EEAMEAVVEVARSDGLV----IGPSGG-AAVKALAKKAAEGDLEPGDYVVV 365
>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId:
562]}
Length = 316
Score = 27.0 bits (59), Expect = 1.2
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 2 TN--LVEEAKRIAAYQA-VDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPT 58
TN L+ A +I Y+ +DD V +V A D+LA I E LK+V
Sbjct: 33 TNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRI 92
Query: 59 SFQ 61
S +
Sbjct: 93 STE 95
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 26.8 bits (58), Expect = 1.4
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 17 VDDNVLNNTAVGI-----GSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQ 64
++D++ + I G+G T Y + E IK ++ PT A +
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAE 53
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 26.6 bits (58), Expect = 1.6
Identities = 17/91 (18%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 18 DDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLKIVCVPTSFQARQLILKNNMVLGDLE 77
D+ ++ + +G G+ +V V R+ ++ +K++ T + +++ ++ L+
Sbjct: 8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD 67
Query: 78 THPDLSCVIDGADEVDENLVLIKGGGGCLTQ 108
+P + +I LV+ GGG L +
Sbjct: 68 -NPYIVRLIGVCQAEALMLVMEMAGGGPLHK 97
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 26.4 bits (57), Expect = 1.8
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 27 VGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
GI SG V A DRLA+ + IV +
Sbjct: 268 AGISSG-AAVAAADRLAKLPEFADKLIVVI 296
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 26.4 bits (57), Expect = 2.0
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 27 VGIGSGSTVVYAVDRLAERIKAEKLKIVCV 56
VGI SG A +LA+R + V +
Sbjct: 264 VGISSG-AAAAAAIKLAQRPENAGKLFVAI 292
>d1xi6a_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 249
Score = 26.2 bits (56), Expect = 2.2
Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 1 MTNLVEEAKRIA--AYQAVDDNVLNNTAVGIGSGSTVVYAVDRLAERIKAEKL 51
+++ + + + D V I VD+LAE + ++
Sbjct: 9 AIDIISDFETTIMPFFGNPDGGK----LVKISPSGDETKLVDKLAEDLILSRI 57
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 25.3 bits (54), Expect = 3.7
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 30 GSGSTVVYAVDRLAERIKAEKLKIVCV 56
S V A +L E IV +
Sbjct: 271 ISSGAAVAAALKLQEDESFTNKNIVVI 297
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 25.2 bits (54), Expect = 4.0
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 30 GSGSTVVYAVDRLAERIKAEKLKIVCV 56
GS + V + A+ ++ + + V +
Sbjct: 306 GSAGSTVAVAVKAAQELQEGQ-RCVVI 331
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 25.1 bits (54), Expect = 4.6
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 30 GSGSTVVYAVDRLAERIKAEKLKIVCV 56
S V A ++A+++ + ++V V
Sbjct: 256 ISSGANVAAALKVAQKLGPDA-RVVTV 281
>d1agqa_ g.17.1.2 (A:) Glial cell-derived neurotrophic factor,
GDNF {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 24.1 bits (52), Expect = 5.3
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 52 KIVCVPTSFQARQLILKNNMVLGDLETHPDLS 83
+ C P +F L +++V S
Sbjct: 62 QACCRPVAFDDDLSFLDDSLV---YHILRKHS 90
>d1vdwa_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 253
Score = 25.0 bits (53), Expect = 5.3
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 6 EEAKRIA--AYQAVDD---NVLNNTAVGIGSGSTVVYAVDRLAERIKAEKLK 52
+ A I + N + + I VD++AE I K K
Sbjct: 7 KIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFK 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.135 0.381
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 617,265
Number of extensions: 28074
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 26
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 49 (23.1 bits)