BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4810
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IJS|P Chain P, Cpv (Strain D) Mutant A300d, Complex (Viral CoatDNA), VP2,
PH7.5, T4 Degrees C
pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid Structure
Length = 584
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 235 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 293
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 294 LPQSEGDTNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPF 353
Query: 212 KYLGAQFIDYMWTRRNATHLTNP 234
K A T N NP
Sbjct: 354 KTPIAAGRGGAQTDENQAADGNP 376
>pdb|4DPV|Z Chain Z, ParvovirusDNA COMPLEX
pdb|1C8H|A Chain A, Canine Parvovirus Strain D Empty Capsid Structure At Ph
5.5
Length = 584
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 235 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 293
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 294 LPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPF 353
Query: 212 KYLGAQFIDYMWTRRNATHLTNP 234
K A T N NP
Sbjct: 354 KTPIAAGRGGAQTDENQAADGNP 376
>pdb|1P5W|A Chain A, The Structures Of Host Range Controlling Regions Of The
Capsids Of Canine And Feline Parvoviruses And Mutants
Length = 548
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 199 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 257
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 258 LPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPF 317
Query: 212 KYLGAQFIDYMWTRRNATHLTNP 234
K A T N NP
Sbjct: 318 KTPIAAGRGGAQTDENQAADGNP 340
>pdb|2CAS|A Chain A, The Canine Parvovirus Empty Capsid Structure
Length = 548
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 199 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 257
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 258 LPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPF 317
Query: 212 KYLGAQFIDYMWTRRNATHLTNP 234
K A T N NP
Sbjct: 318 KTPIAAGRGGAQTDENQAADGNP 340
>pdb|1P5Y|A Chain A, The Structures Of Host Range Controlling Regions Of The
Capsids Of Canine And Feline Parvoviruses And Mutants
Length = 548
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 199 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 257
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 258 LPQSEGATNFGDIGVQQDKRRGVTQMGNTNYITEATIMRPAEVGYSAPYYSFEASTQGPF 317
Query: 212 KYLGAQFIDYMWTRRNATHLTNP 234
K A T N NP
Sbjct: 318 KTPIAAGRGGAQTDENQAADGNP 340
>pdb|1FPV|A Chain A, Structure Determination Of Feline Panleukopenia Virus
Empty Particles
Length = 584
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 235 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 293
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 294 LPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPF 353
Query: 212 K 212
K
Sbjct: 354 K 354
>pdb|1C8E|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8G|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
Length = 548
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 101 GGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLI------ 154
G DPDD+++++ VP+ L F T F + CK L T+ +TN +
Sbjct: 199 GTDPDDVQFYTIENSVPVHLLRTGDEFATGTFFFDCKPCRL-THTWQTNRALGLPPFLNS 257
Query: 155 MTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLN-ILFNTLAVCFNI--YSMEMLLRGYF 211
+ + F + KR G + Y+ + V ++ YS E +G F
Sbjct: 258 LPQSEGATNFGDIGVQQDKRRGVTQMGNTDYITEATIMRPAEVGYSAPYYSFEASTQGPF 317
Query: 212 K 212
K
Sbjct: 318 K 318
>pdb|3EVS|C Chain C, Crystal Structure Of The Gdf-5:bmp Receptor Ib Complex
Length = 119
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 15/57 (26%)
Query: 58 QSGSSTKPHP------------VPEDIMNTFCFTQT-TFTYINQDESPLTYPGITSG 101
+ G ST P P PED +N C T FT I +D+S + P +TSG
Sbjct: 9 EDGESTAPTPRPKILRCKCHHHCPEDSVNNICSTDGYCFTMIEEDDSGM--PVVTSG 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,532,381
Number of Sequences: 62578
Number of extensions: 497218
Number of successful extensions: 1130
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 8
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)