Query psy4810
Match_columns 434
No_of_seqs 137 out of 505
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:20:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02748 viral inexin-like pro 100.0 2E-105 4E-110 813.7 35.8 352 1-392 1-356 (360)
2 PF00876 Innexin: Innexin; In 100.0 1.8E-97 4E-102 754.5 32.1 333 22-391 1-348 (348)
3 cd00929 Cyt_c_Oxidase_VIIc Cyt 47.7 28 0.0006 25.8 3.4 32 289-320 11-42 (46)
4 PF05402 PqqD: Coenzyme PQQ sy 44.3 71 0.0015 24.3 5.6 44 126-172 15-59 (68)
5 PRK01844 hypothetical protein; 34.2 2E+02 0.0044 23.4 6.7 48 302-356 3-50 (72)
6 PRK00523 hypothetical protein; 24.8 3.7E+02 0.008 21.9 6.7 23 333-356 29-51 (72)
7 PF00017 SH2: SH2 domain; Int 23.9 39 0.00084 26.3 1.0 32 343-374 4-35 (77)
8 PF04088 Peroxin-13_N: Peroxin 23.2 58 0.0013 30.2 2.1 22 115-137 136-157 (158)
9 KOG4143|consensus 22.6 3.6E+02 0.0078 25.7 7.2 93 302-418 3-98 (218)
10 COG1981 Predicted membrane pro 20.2 84 0.0018 28.9 2.5 25 111-135 6-35 (149)
No 1
>PHA02748 viral inexin-like protein; Provisional
Probab=100.00 E-value=1.9e-105 Score=813.72 Aligned_cols=352 Identities=30% Similarity=0.605 Sum_probs=322.9
Q ss_pred ChhhhHhhhhcccccccccccCCceeeehhhhhHHHHHHHHHHHhhhhhcCCceEEeeCCCCCCCCCCchhhhhhceeee
Q psy4810 1 MDQILVNLEKFKIFNHEKVRIDSRICEFHYRLTTLLLFTCTSIISFTQVFGSPINCVQSGSSTKPHPVPEDIMNTFCFTQ 80 (434)
Q Consensus 1 ~~~~~~~l~~~~~~~~~~~~iDD~vdRL~~~~Tv~lLl~~a~lvs~kqy~G~PI~C~~P~~f~~~s~~~~~y~~~yCwi~ 80 (434)
|+.+++.|+++- |.+++.+||++|||||++||+||++||+++|+|||||+||+||+|++ +++|+|+|||++
T Consensus 1 M~~~~~~l~~~l--k~~~v~~Dd~vdrLhy~~Tv~iL~~~silvs~kQy~G~PI~C~~p~~-------~~~~~n~yCwi~ 71 (360)
T PHA02748 1 MLDLFSALRGLL--KVQSVSIDNNFFRLHYKITVIILLAFSLLVTSRQYFGDPIDCDFPDY-------PNGSLNTYCYVQ 71 (360)
T ss_pred ChhHHHHHHHhh--CcceeeccchhheehHHHHHHHHHHHHHHHHHHHHCCCCeEeccCCC-------ccchhhceeeee
Confidence 888888888764 67999999999999999999999999999999999999999999965 278999999999
Q ss_pred eeEEeecC----CCCCCCCCCCCCCCCCCCcceeecchhHHHHHHHHHHHhhhhHHHHhhhhCCchHHHHHhhhhhhcCC
Q psy4810 81 TTFTYINQ----DESPLTYPGITSGGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWKCKEGSLMTNLLKTNEHYLIMT 156 (434)
Q Consensus 81 ~Ty~v~~~----~~~~v~~p~~~~~~~~~~~~~i~YYQWVPfiL~lQA~lFylP~~iWk~~~g~~l~~l~~~~~~~~~~~ 156 (434)
|||++|.+ .++++|+||++++.+++++++++|||||||+|++||++||+|+++||.++||++++++.+++.+...
T Consensus 72 ~Ty~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~YYQWVpfvL~lQA~lFYiP~~iWk~~egg~i~~l~~~~~~~~~~- 150 (360)
T PHA02748 72 STFLVERKVTHTVNSTVPDPGVSGDTEEDELRYYGYYQWVFITLFLQAVFFYIPHYIWKAWEGGKMKMLAVELASPVLS- 150 (360)
T ss_pred eEEEeecccccccccccCCCCCCCCccccceeEeceeeHHHHHHHHHHHHHHchHHHHHHhccCcHHHHHHhhccccCC-
Confidence 99999985 2334667787766667788999999999999999999999999999999999999999887755544
Q ss_pred HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccccCCCCCc
Q psy4810 157 TAARKLQFKQVSSYLIKRHGSFYVYAYAYLLNILFNTLAVCFNIYSMEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLD 236 (434)
Q Consensus 157 ~~~r~~~~~~la~~l~~~~~~~~~~~~~Yl~~K~L~l~Nvv~Qi~ll~~fLg~~f~~~G~~vl~~l~~~~~~~~~~~~~~ 236 (434)
+++|+++++.+++|+.++++.|+.|+..|++||+||++|+++||++||+|||++|..||++++.+...+
T Consensus 151 ~~~~~~~i~~l~~y~~~~l~~h~~y~~~Y~~~klL~l~Nvi~Qi~lmn~FLg~~f~~yG~~vl~~~~~~----------- 219 (360)
T PHA02748 151 KDCIEKNTQPLVDYFFMNLHSHNAYAYKYFTCELLNLINIVGQIQFMNIFIGEDFQLYGIYVIFFNQEA----------- 219 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhccHHHHhhhhhc-----------
Confidence 889999999999999999999999999999999999999999999999999999999999999866222
Q ss_pred ccCCCcccccccccCCCCcccccccccCceeeeeeeeecCCCCcceeeeeeeccccchhhHHHHHHHHHHHHHHHHHHHH
Q psy4810 237 ITFPKMTKCTFYKYGPSDLHHALVLVFPKMTKCTFYKYGPSGTLEVVDAMCLLPLNNLNEKIFIMLWFWYLILFCISISY 316 (434)
Q Consensus 237 ~~fp~~~~~~~y~~~~~~~~~~~s~~FPrVT~Cdf~~~r~~G~vq~~tvQCVLpiN~~NEKIfifLWFW~v~L~viti~s 316 (434)
+++|.||++++|||||+|||+++|++||+|+||+|||||+||+|||||+|||||+++|+++|+++
T Consensus 220 ---------------~~~~~~~~s~~FPrvT~C~f~~~~~~G~~~~~~~qCVLpiN~~NEKIfiFLWFW~~~lav~t~~~ 284 (360)
T PHA02748 220 ---------------GKSMTNPMERLFPTVTKCTYEKYGPSGTPENIEGICLLTQNSLNEKIYVFLWFWFHILAVISAFV 284 (360)
T ss_pred ---------------cccccCcccCccCcceeeeeeeecCCCCcceeeeEEEechhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999988899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcchhhHHHHHHHhhccccCCCChHHHHHHHhccCCCcEehhHHHHhccChhHHHHHHHHHHHHhcccc
Q psy4810 317 SVMKISQGLAINSRNTLLMKRYFFTSGFILDEELKILLEKLDVGQWFVIDIVRLNLSSLHYKDFLKALVEGFRDKR 392 (434)
Q Consensus 317 ll~wi~~~~~~~~R~~~i~~~l~~~~~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~lv~~elv~~L~~~~~~~~ 392 (434)
+++|++++++++.|.++++.+.+.. ++++++.+.++|+.||||+||||++|+|+++++||+.+||++|+++.
T Consensus 285 ~~~~i~~~~~~~~R~~~ir~~~~~~----~~~~~~~v~~~l~~ddwFlL~~l~~N~~~~~~~eli~~L~~~~~~~~ 356 (360)
T PHA02748 285 VIYRIATLLSSSLRLYMFRSSSSLN----RADDIAVVYNKLQIGDWFLLHMLRKNINPLAYKELISRLAQHFDVSV 356 (360)
T ss_pred HHHHHHHHhChHHHHHHHHHhhccC----CHHHHHHHHHhCCcCCEEEhhHhhhhCChHHHHHHHHHHHHHccccc
Confidence 9999999999999999999877544 56777888889999999999999999999999999999999997543
No 2
>PF00876 Innexin: Innexin; InterPro: IPR000990 The pannexin family combines invertebrate gap junction proteins and their vertebrate homologs. These proteins have been named innexins []. Gap junctions are composed of membrane proteins, which form a channel permeable for ions and small molecules connecting cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until recently it was believed that vertebrates and invertebrates use unrelated proteins for this purpose. While the connexins family of gap junction proteins is well- characterised in vertebrates, no homologs have been found in invertebrates. In turn, gap junction molecules with no sequence homology to connexins have been identified in insects and nematodes. It has been suggested that these proteins are specific invertebrate gap junctions, and they were thus named innexins (invertebrate analog of connexins) []. As innexin homologs were recently identified in other taxonomic groups including vertebrates, indicating their ubiquitous distribution in the animal kingdom, they were called pannexins (from the Latin pan-all, throughout, and nexus-connection, bond) [, , ]. Genomes of vertebrates carry probably a conserved set of 3 pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects [, ]. Structurally pannexins are simillar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.; GO: 0005921 gap junction
Probab=100.00 E-value=1.8e-97 Score=754.51 Aligned_cols=333 Identities=26% Similarity=0.506 Sum_probs=303.2
Q ss_pred CCceeeehhhhhHHHHHHHHHHHhhhhhcCCceEEeeCCCCCCCCCCchhhhhhceeeeeeEEeecCCCCCCCCCCCCCC
Q psy4810 22 DSRICEFHYRLTTLLLFTCTSIISFTQVFGSPINCVQSGSSTKPHPVPEDIMNTFCFTQTTFTYINQDESPLTYPGITSG 101 (434)
Q Consensus 22 DD~vdRL~~~~Tv~lLl~~a~lvs~kqy~G~PI~C~~P~~f~~~s~~~~~y~~~yCwi~~Ty~v~~~~~~~v~~p~~~~~ 101 (434)
||++|||||++||.+|+++|+++++|||||+||+||+|++ ++++| ++|+|+|||++|||++|.++ ++ |+..++
T Consensus 1 Dd~~dRl~~~~Tv~lL~~~a~lv~~kqy~G~PI~C~~P~~-f~~~~--~~y~~~yCwi~~Ty~v~~~~--~~--~~~~~~ 73 (348)
T PF00876_consen 1 DDFVDRLNYKYTVILLLFFALLVSAKQYFGSPIQCWVPAE-FTGSW--EEYANSYCWIQNTYFVPMNE--DV--PGTDPE 73 (348)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHhcCCCceeeCCCC-CCcch--HhHHHhhhcccceEeccccc--cC--CCCccc
Confidence 8999999999999999999999999999999999999999 56777 99999999999999999773 44 333322
Q ss_pred -CCCCCcceeecchhHHHHHHHHHHHhhhhHHHHh---hhhCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHHHhccc
Q psy4810 102 -GDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWK---CKEGSLMTNLLKTNEHYLIMTTAARKLQFKQVSSYLIKRHGS 177 (434)
Q Consensus 102 -~~~~~~~~i~YYQWVPfiL~lQA~lFylP~~iWk---~~~g~~l~~l~~~~~~~~~~~~~~r~~~~~~la~~l~~~~~~ 177 (434)
.+.+++++++|||||||+|++||+|||+|+++|| .++|+++++++++++.+...+.++|++.++++|+|+.+.++.
T Consensus 74 ~~~~~~~~~i~YYQWVPfiL~lQA~lfylP~~iW~~~~~~~g~~l~~i~~~~~~~~~~~~~~r~~~~~~l~~~l~~~l~~ 153 (348)
T PF00876_consen 74 WRREREKREISYYQWVPFILLLQAILFYLPHLIWRLLNKWSGIDLKSIVEEADKAQNSDPEERKKKIEKLARYLERYLKQ 153 (348)
T ss_pred cccccccceEeeehhhHHHHHHHHHHHHhHHHHHHHhhhccCccHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 2244688999999999999999999999999999 567899999999999988886799999999999999999888
Q ss_pred CchH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccccCCCCCcccCCCcccccccc
Q psy4810 178 FYVY--------AYAYLLNILFNTLAVCFNIYSMEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLDITFPKMTKCTFYK 249 (434)
Q Consensus 178 ~~~~--------~~~Yl~~K~L~l~Nvv~Qi~ll~~fLg~~f~~~G~~vl~~l~~~~~~~~~~~~~~~~fp~~~~~~~y~ 249 (434)
|+.+ +..|+++|+||++|+++|+++|++|||+++..||.+++.++++|++
T Consensus 154 ~~~~~~~~g~~l~~~Yl~~K~L~l~n~i~Q~~ll~~fLg~~~~~~G~~~~~~~~~g~~---------------------- 211 (348)
T PF00876_consen 154 HRRYKKRSGNYLTFLYLFCKLLYLINVIGQIFLLNAFLGGDFYFWGFEVLSDLLNGRD---------------------- 211 (348)
T ss_pred hhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHHHHHHhhhhhhh----------------------
Confidence 8755 9999999999999999999999999999999999999999988876
Q ss_pred cCCCCcccccccccCceeeeeeeeecCCCCcceeeeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Q psy4810 250 YGPSDLHHALVLVFPKMTKCTFYKYGPSGTLEVVDAMCLLPLNNLNEKIFIMLWFWYLILFCISISYSVMKISQGLAINS 329 (434)
Q Consensus 250 ~~~~~~~~~~s~~FPrVT~Cdf~~~r~~G~vq~~tvQCVLpiN~~NEKIfifLWFW~v~L~viti~sll~wi~~~~~~~~ 329 (434)
|++ +++|||||+|||++ |.+|++|+||+|||||+||+|||||+|||||+++|+++|++|+++|+++++.++.
T Consensus 212 --w~~-----s~~FPrvt~Cdf~v-r~lg~~~~~tvqCvL~iN~~NEKIfifLWfW~v~l~vit~~~~i~w~~~~~~~~~ 283 (348)
T PF00876_consen 212 --WQE-----SGVFPRVTFCDFEV-RQLGNVQRHTVQCVLPINMFNEKIFIFLWFWFVFLAVITVLSLIYWIFRLFSPSS 283 (348)
T ss_pred --hcc-----CCCCCCcceechhh-hhcCCccceeEEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 554 78999999999996 7799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCC--hHHHHHHH-hccCCCcEehhHHHHhccChhHHHHHHHHHHHHhccc
Q psy4810 330 RNTLLMKRYFFTSGFIL--DEELKILL-EKLDVGQWFVIDIVRLNLSSLHYKDFLKALVEGFRDK 391 (434)
Q Consensus 330 R~~~i~~~l~~~~~~~~--~~~~~~~~-~~l~~dg~FlL~mi~~N~g~lv~~elv~~L~~~~~~~ 391 (434)
|..++++.++..+...+ ++..++|+ ++|+.||||+||||+.|+|+++++|++++||++|++|
T Consensus 284 ~~~~i~~~l~~~~~~~~~~~~~~~~fv~~~L~~Dg~flL~~i~~n~g~~v~~el~~~L~~~~~~~ 348 (348)
T PF00876_consen 284 RRSFIKQLLRLADSFSPKDKRLLDRFVNDYLRPDGVFLLRLIAKNAGDIVARELVEELWERYKEK 348 (348)
T ss_pred HHHHHHHHHHhCCCccccchHHHHHHHHhccCCCCEeHHHHHHHhCChHHHHHHHHHHHHHHhhC
Confidence 99999999887633222 35677888 5799999999999999999999999999999999875
No 3
>cd00929 Cyt_c_Oxidase_VIIc Cytochrome c oxidase subunit VIIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIIc subunit is found only in eukaryotes and its specific function remains unclear. Peroxide inactivation of bovine CcO coincides with the direct oxidation of tryptophan (W19) within subunit VIIc, along with other structural changes in other subunits.
Probab=47.69 E-value=28 Score=25.81 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4810 289 LPLNNLNEKIFIMLWFWYLILFCISISYSVMK 320 (434)
Q Consensus 289 LpiN~~NEKIfifLWFW~v~L~viti~sll~w 320 (434)
||-|+-|.+++.+.|+|+..++...=+-+++|
T Consensus 11 LPF~~~nk~~~~~~~~~ffg~GF~~PF~i~~~ 42 (46)
T cd00929 11 LPFSVTNKWRLTALFHLFFGSGFSAPFIVVRH 42 (46)
T ss_pred CCcccCccchHHHHHHHHHHHHHhhhHHHHHH
Confidence 89999999998888888776666554444444
No 4
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=44.27 E-value=71 Score=24.31 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=23.4
Q ss_pred HhhhhHHHHhhhhCC-chHHHHHhhhhhhcCCHHHHHHHHHHHHHHHH
Q psy4810 126 VFLTPHFLWKCKEGS-LMTNLLKTNEHYLIMTTAARKLQFKQVSSYLI 172 (434)
Q Consensus 126 lFylP~~iWk~~~g~-~l~~l~~~~~~~~~~~~~~r~~~~~~la~~l~ 172 (434)
+=-.=..||+.+.|+ ++..+++.+...-..+++. ..+.+.+++.
T Consensus 15 Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~y~~~~~~---~~~dv~~fl~ 59 (68)
T PF05402_consen 15 LNETAAFIWELLDGPRTVEEIVDALAEEYDVDPEE---AEEDVEEFLE 59 (68)
T ss_dssp --THHHHHHHH--SSS-HHHHHHHHHHHTT--HHH---HHHHHHHHHH
T ss_pred ccHHHHHHHHHccCCCCHHHHHHHHHHHcCCCHHH---HHHHHHHHHH
Confidence 334457899999884 6999998886654333333 3344444443
No 5
>PRK01844 hypothetical protein; Provisional
Probab=34.19 E-value=2e+02 Score=23.37 Aligned_cols=48 Identities=15% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhccccCCCChHHHHHHHhc
Q psy4810 302 LWFWYLILFCISISYSVMKISQGLAINSRNTLLMKRYFFTSGFILDEELKILLEK 356 (434)
Q Consensus 302 LWFW~v~L~viti~sll~wi~~~~~~~~R~~~i~~~l~~~~~~~~~~~~~~~~~~ 356 (434)
+|.|+++..+.-++.++.=++. .| ..++++++.+ .+++++.++.....
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~-----ar-k~~~k~lk~N-Ppine~mir~Mm~Q 50 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFI-----AR-KYMMNYLQKN-PPINEQMLKMMMMQ 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHC-CCCCHHHHHHHHHH
Confidence 6777765444444444332221 12 3556677655 56777777665543
No 6
>PRK00523 hypothetical protein; Provisional
Probab=24.77 E-value=3.7e+02 Score=21.90 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=14.7
Q ss_pred HHHHhhccccCCCChHHHHHHHhc
Q psy4810 333 LLMKRYFFTSGFILDEELKILLEK 356 (434)
Q Consensus 333 ~i~~~l~~~~~~~~~~~~~~~~~~ 356 (434)
.++++++.+ .+++++.++.....
T Consensus 29 ~~~k~l~~N-Ppine~mir~M~~Q 51 (72)
T PRK00523 29 MFKKQIREN-PPITENMIRAMYMQ 51 (72)
T ss_pred HHHHHHHHC-cCCCHHHHHHHHHH
Confidence 456677655 66777777665543
No 7
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=23.93 E-value=39 Score=26.32 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
+.+++++.++.+.....+|.||+|-.....|.
T Consensus 4 g~isr~~Ae~~L~~~~~~G~FLvR~s~~~~~~ 35 (77)
T PF00017_consen 4 GFISRQEAERLLMQGKPDGTFLVRPSSSKPGK 35 (77)
T ss_dssp ESSHHHHHHHHHHTTSSTTEEEEEEESSSTTS
T ss_pred CCCCHHHHHHHHHhcCCCCeEEEEeccccccc
Confidence 45678888888877788999999877654444
No 8
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=23.18 E-value=58 Score=30.23 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHhhhhHHHHhhh
Q psy4810 115 WVPIFLFIQALVFLTPHFLWKCK 137 (434)
Q Consensus 115 WVPfiL~lQA~lFylP~~iWk~~ 137 (434)
|-|+++++-| .|=+|.++||++
T Consensus 136 ~~PlllF~~~-v~G~PyLi~Kli 157 (158)
T PF04088_consen 136 SKPLLLFLAA-VFGLPYLIWKLI 157 (158)
T ss_pred cccHHHHHHH-HHHHHHHHHHHh
Confidence 8899998877 899999999975
No 9
>KOG4143|consensus
Probab=22.58 E-value=3.6e+02 Score=25.75 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=54.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHhcchhhHHHHHHHhhccccCCCChHHHHHHHh-ccCCCcEehhHHHHhccChhHHHH
Q psy4810 302 LWFWY-LILFCISISYSVMKISQGLAINSRNTLLMKRYFFTSGFILDEELKILLE-KLDVGQWFVIDIVRLNLSSLHYKD 379 (434)
Q Consensus 302 LWFW~-v~L~viti~sll~wi~~~~~~~~R~~~i~~~l~~~~~~~~~~~~~~~~~-~l~~dg~FlL~mi~~N~g~lv~~e 379 (434)
.|-|+ ++++++..+.-+.|..-+ ++ +-.++++++.++.+ +.+.|. |.-.-..++
T Consensus 3 ~~~~l~lli~v~a~l~~vv~~~~l----------~~-----~y~Fdp~~l~el~~q~i~l~~---------~~t~all~d 58 (218)
T KOG4143|consen 3 RWAWLALLIAVAAVLTQVVWLWLL----------TQ-----SYVFDPEELAELARQYIGLDA---------NHTLALLRD 58 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc----------cc-----ceeeCHHHHHHHHHHHhcccc---------ccHHHHHHH
Confidence 58888 777787777766666532 11 12246777776665 344333 333334456
Q ss_pred HHHHHHHHhccccc-CCCCcceeeeecccccCCCCCCCcc
Q psy4810 380 FLKALVEGFRDKRR-LQNNNNVILAETGCMGNGQVDHDHV 418 (434)
Q Consensus 380 lv~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (434)
++..|--.|.+--. ....+=|-|+-.|+||---+=|-|+
T Consensus 59 i~d~l~~hyGd~i~p~~~~eWVfnNAGGaMG~M~iLHAS~ 98 (218)
T KOG4143|consen 59 IVDLLRLHYGDHILPDEELEWVFNNAGGAMGAMCILHASL 98 (218)
T ss_pred HHHHHHhCcccccCccchheeeeecccchhhhHHHhhHhH
Confidence 66666666665322 2233338888888888665555543
No 10
>COG1981 Predicted membrane protein [Function unknown]
Probab=20.21 E-value=84 Score=28.87 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=19.6
Q ss_pred ecchhHH-----HHHHHHHHHhhhhHHHHh
Q psy4810 111 SYYQWVP-----IFLFIQALVFLTPHFLWK 135 (434)
Q Consensus 111 ~YYQWVP-----fiL~lQA~lFylP~~iWk 135 (434)
.||-|+= ++..--|.+||+|+++=.
T Consensus 6 ~~y~W~KafHiiavisWmAglfYLPRlFVy 35 (149)
T COG1981 6 DYYLWVKAFHLIAVISWMAGLFYLPRLFVY 35 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788864 566778999999998854
Done!