Query psy4810
Match_columns 434
No_of_seqs 137 out of 505
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:20:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i3z_A EWS/FLI1 activated tran 15.4 72 0.0025 25.2 2.1 32 343-374 8-39 (103)
2 2ekx_A Cytoplasmic tyrosine-pr 14.0 80 0.0027 25.3 2.0 30 343-373 16-45 (110)
3 1d4t_A T cell signal transduct 13.7 73 0.0025 25.2 1.6 32 343-374 9-40 (104)
4 1jyr_A Growth factor receptor- 13.4 79 0.0027 24.8 1.7 32 343-374 8-39 (96)
5 2cia_A Cytoplasmic protein NCK 12.9 79 0.0027 25.1 1.6 31 343-373 10-40 (102)
6 1nrv_A Growth factor receptor- 12.7 92 0.0031 24.7 2.0 32 343-374 10-42 (105)
7 2ge9_A Tyrosine-protein kinase 12.6 80 0.0027 26.2 1.6 30 343-373 16-45 (125)
8 2gsb_A RAS GTPase-activating p 12.4 95 0.0032 25.5 2.0 32 343-374 21-52 (119)
9 3tkz_A Tyrosine-protein phosph 12.0 86 0.003 25.0 1.6 32 343-374 12-43 (109)
10 3ov1_A Growth factor receptor- 12.0 58 0.002 26.8 0.5 32 343-374 11-42 (117)
No 1
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=15.44 E-value=72 Score=25.16 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
|.+++++.+.++..-+.||.||+|-.+...|.
T Consensus 8 g~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~ 39 (103)
T 1i3z_A 8 GCLTKRECEALLLKGGVDGNFLIRDSESVPGA 39 (103)
T ss_dssp SSCCHHHHHHHHHTTCSTTEEEEEECSSSTTC
T ss_pred CCCCHHHHHHHHhhcCCCceEEEEeCCCCCCC
Confidence 56788999988876568999999987665553
No 2
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=14.03 E-value=80 Score=25.31 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.3
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccC
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLS 373 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g 373 (434)
+.+++++.+.+++.-+.||.||+|-. ...|
T Consensus 16 g~isR~~Ae~lL~~~~~~G~FLVR~S-~~~g 45 (110)
T 2ekx_A 16 GNISRSQSEQLLRQKGKEGAFMVRNS-SQVG 45 (110)
T ss_dssp CSCCHHHHHHHHHHTCCTTEEEEEEC-SSTT
T ss_pred CCCCHHHHHHHHhccCCCceEEEEec-CCCC
Confidence 56788899888876668999999976 3444
No 3
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=13.66 E-value=73 Score=25.23 Aligned_cols=32 Identities=16% Similarity=0.024 Sum_probs=24.8
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
|.+++++.+..+..-+.||.||+|-.+...|.
T Consensus 9 g~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~ 40 (104)
T 1d4t_A 9 GKISRETGEKLLLATGLDGSYLLRDSESVPGV 40 (104)
T ss_dssp CSCCHHHHHHHHHHHCCTTEEEEEECSSSTTC
T ss_pred cCCCHHHHHHHHHhcCCCCEEEEeeCCCCCCC
Confidence 56788999888875558999999977655554
No 4
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=13.35 E-value=79 Score=24.83 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=24.9
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
|.+++++.+.+++.-+.||.||+|-.....|.
T Consensus 8 g~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g~ 39 (96)
T 1jyr_A 8 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGD 39 (96)
T ss_dssp CSCCHHHHHHHHHTCCSTTBEEEEECSSSTTC
T ss_pred cCCCHHHHHHHHhcCCCCcEEEEEecCCCCCC
Confidence 56789999988877656999999987655553
No 5
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation, binding specificity; HET: PTR MPD; 1.45A {Homo sapiens} PDB: 1z3k_A 2ci9_A* 2ci8_A*
Probab=12.95 E-value=79 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.131 Sum_probs=24.2
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccC
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLS 373 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g 373 (434)
|.+++++.+.++..-+.||.||+|-.+...|
T Consensus 10 g~isR~~Ae~lL~~~~~~G~FLVR~S~~~~g 40 (102)
T 2cia_A 10 GNVTRHQAECALNERGVEGDFLIRDSESSPS 40 (102)
T ss_dssp CSCCHHHHHHHHHHHCCTTEEEEEECSSSTT
T ss_pred CCCCHHHHHHHHhhCCCCcEEEEEECCCCCC
Confidence 5678889888886555899999997766555
No 6
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein; 1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Probab=12.73 E-value=92 Score=24.66 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHhccC-CCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLD-VGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~-~dg~FlL~mi~~N~g~ 374 (434)
|.+++++.+.++..-+ .||.||+|-.+...|.
T Consensus 10 g~isR~~Ae~lL~~~g~~~G~FLVR~S~~~~g~ 42 (105)
T 1nrv_A 10 GRISREESHRIIKQQGLVDGLFLLRDSQSNPKA 42 (105)
T ss_dssp TTCCHHHHHHHHHHTTCCTTEEEEEECSSCTTC
T ss_pred CCCCHHHHHHHHHhcCCCCceEEEEeCCCCCCC
Confidence 5678899988887654 7999999987665554
No 7
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase; NMR {Homo sapiens}
Probab=12.55 E-value=80 Score=26.16 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=23.4
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccC
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLS 373 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g 373 (434)
|.+++++.+.+++.-+.||.||+|-. ...|
T Consensus 16 G~isR~eAe~lL~~~g~~G~FLVR~S-s~~g 45 (125)
T 2ge9_A 16 KHMTRSQAEQLLKQEGKEGGFIVRDS-SKAG 45 (125)
T ss_dssp TTCCHHHHHHHHHHHTCTTEEEEEEC-SSSC
T ss_pred cCCCHHHHHHHHhhcCCCceEEEEec-CCCC
Confidence 56788898888876668999999976 3444
No 8
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=12.36 E-value=95 Score=25.46 Aligned_cols=32 Identities=19% Similarity=0.067 Sum_probs=25.4
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
+.+++++.+.+++.-+.+|.||+|-...+.|.
T Consensus 21 G~isR~~Ae~lL~~~g~~G~FLVR~S~~~~g~ 52 (119)
T 2gsb_A 21 GKISKQEAYNLLMTVGQVCSFLVRPSDNTPGD 52 (119)
T ss_dssp CSSCHHHHHHHHHHTCCSSEEEEEECSSSTTC
T ss_pred CCCCHHHHHHHHhhcCCCCeEEEEeCCCCCCc
Confidence 56788999988887667899999987665553
No 9
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=12.02 E-value=86 Score=25.01 Aligned_cols=32 Identities=22% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
|.+++++.+..++.-+.+|.||+|-.+...|.
T Consensus 12 g~isr~~Ae~lL~~~~~~G~FLVR~S~~~~g~ 43 (109)
T 3tkz_A 12 PNITGVEAENLLLTRGVDGSFLARPSKSNPGD 43 (109)
T ss_dssp TTCCHHHHHHHHHHHCCTTEEEEEECSSSTTC
T ss_pred cCCCHHHHHHHHhcCCCCCEEEEEecCCCCCC
Confidence 56788888888876568999999987656554
No 10
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain, phosphotyrosine binding, signaling protein, signaling protein-antagonist complex; HET: PTR; 1.60A {Homo sapiens} SCOP: d.93.1.1 PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A* 3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A* 2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A* 1fyr_A* ...
Probab=12.02 E-value=58 Score=26.78 Aligned_cols=32 Identities=19% Similarity=0.111 Sum_probs=25.2
Q ss_pred CCCChHHHHHHHhccCCCcEehhHHHHhccCh
Q psy4810 343 GFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374 (434)
Q Consensus 343 ~~~~~~~~~~~~~~l~~dg~FlL~mi~~N~g~ 374 (434)
|.+++++.+.+++.-..||.||+|-...+.|.
T Consensus 11 G~isR~eAe~lL~~~~~~G~FLVR~S~~~~g~ 42 (117)
T 3ov1_A 11 GKIPRAKAEEMLSKQRHDGAFLIRESESAPGD 42 (117)
T ss_dssp CSCCHHHHHHHHHTCCSTTBEEEEECSSSTTC
T ss_pred CCCCHHHHHHHHhCCCCCCcEEEEeCCCCCCC
Confidence 56788899888887667999999977655554
Done!