RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4810
(434 letters)
>gnl|CDD|216168 pfam00876, Innexin, Innexin. This family includes the drosophila
proteins Ogre and shaking-B, and the C. elegans proteins
Unc-7 and Unc-9. Members of this family are integral
membrane proteins which are involved in the formation of
gap junctions. This family has been named the Innexins.
Length = 341
Score = 209 bits (535), Expect = 3e-64
Identities = 102/372 (27%), Positives = 160/372 (43%), Gaps = 45/372 (12%)
Query: 28 FHYRLTTLLLFTCTSIISFTQVFGSPINCVQSGSSTKPHPVPEDIMNTFCFTQTTFTYIN 87
HY+ T ++L + ++S Q FG PI C E+ N +C+ Q T+
Sbjct: 7 LHYKYTVIILLAFSLLVSAKQYFGDPIECWVPAEFPGSW---EEYANNYCWVQNTYFLPL 63
Query: 88 QDESPLTYPGITSGGDPDDIRYHSYYQWVPIFLFIQALVFLTPHFLWK---CKEGSLMTN 144
+E P T P + +Y +YYQWVP LF+QAL+F PH++WK EG +
Sbjct: 64 GEEVPGTDPEED---RERERKYITYYQWVPFVLFLQALLFYIPHYIWKLLSSWEGGRLKA 120
Query: 145 LLKTNEHYLIMTTAARKLQFKQVSSYLIK-----RHGSFYVYAYAYLLNILFNTLAVCFN 199
L+ ++ RK + K ++ YL AY Y L N + V
Sbjct: 121 LVDELNSAILSEPDERKKRIKPLARYLDDNLHSHNRYYGNYLAYLYFFCKLLNLINVIGQ 180
Query: 200 IYSMEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLDITFPKMTKCTFYKYGPSDLHHAL 259
I+ + L G F + G + + + T
Sbjct: 181 IFLLNRFLGGDFHFYGIDVLADLLNGEDWTD----------------------------- 211
Query: 260 VLVFPKMTKCTFYKYGPSGTLEVVDAMCLLPLNNLNEKIFIMLWFWYLILFCISISYSVM 319
VFP++TKC F G+++ C+LP+N NEKIFI LWFW++ L IS+ +
Sbjct: 212 SGVFPRVTKCDFEIRKLGGSVQNYTVQCVLPINIFNEKIFIFLWFWFVFLAIISVLSLLY 271
Query: 320 KISQGLAINSRNTLLMKRYFFTSGFILDEELKILLEKLDVGQWFVIDIVRLNLSSLHYKD 379
I+ L SR K+ S L+ K + + L + WF++ ++ NL L YK+
Sbjct: 272 WIAT-LLSPSRRVSFRKKLLRASS-KLNPLDKFVRDYLRIDGWFLLRMLAKNLGDLVYKE 329
Query: 380 FLKALVEGFRDK 391
++ L + FR+K
Sbjct: 330 LIEELWQRFREK 341
>gnl|CDD|165115 PHA02748, PHA02748, viral inexin-like protein; Provisional.
Length = 360
Score = 180 bits (460), Expect = 5e-53
Identities = 110/376 (29%), Positives = 181/376 (48%), Gaps = 42/376 (11%)
Query: 19 VRIDSRICEFHYRLTTLLLFTCTSIISFTQVFGSPINCVQSGSSTKPHPVPEDIMNTFCF 78
V ID+ HY++T ++L + +++ Q FG PI+C P +NT+C+
Sbjct: 17 VSIDNNFFRLHYKITVIILLAFSLLVTSRQYFGDPIDCDFPD-------YPNGSLNTYCY 69
Query: 79 TQTTFT---YINQDESPLTYPGITSGGDPDD-IRYHSYYQWVPIFLFIQALVFLTPHFLW 134
Q+TF + + SG +D +RY+ YYQWV I LF+QA+ F PH++W
Sbjct: 70 VQSTFLVERKVTHTVNSTVPDPGVSGDTEEDELRYYGYYQWVFITLFLQAVFFYIPHYIW 129
Query: 135 KCKEGSLMTNLLKTNEHYLIMTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLNILFNTL 194
K EG M +L +++ + + + Y S YAY Y L N +
Sbjct: 130 KAWEGGKM-KMLAVELASPVLSKDCIEKNTQPLVDYFFMNLHSHNAYAYKYFTCELLNLI 188
Query: 195 AVCFNIYSMEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLDITFPKMTKCTFYKYGPSD 254
+ I M + + F+ G I + + +TNP++
Sbjct: 189 NIVGQIQFMNIFIGEDFQLYGIYVI--FFNQEAGKSMTNPME------------------ 228
Query: 255 LHHALVLVFPKMTKCTFYKYGPSGTLEVVDAMCLLPLNNLNEKIFIMLWFWYLILFCISI 314
+FP +TKCT+ KYGPSGT E ++ +CLL N+LNEKI++ LWFW+ IL IS
Sbjct: 229 ------RLFPTVTKCTYEKYGPSGTPENIEGICLLTQNSLNEKIYVFLWFWFHILAVISA 282
Query: 315 SYSVMKISQGLAINSRNTLLMKRYFFTSGFILDEELKILLEKLDVGQWFVIDIVRLNLSS 374
+ +I+ L+ + R L M R +S +++ ++ KL +G WF++ ++R N++
Sbjct: 283 FVVIYRIATLLSSSLR--LYMFR--SSSSLNRADDIAVVYNKLQIGDWFLLHMLRKNINP 338
Query: 375 LHYKDFLKALVEGFRD 390
L YK+ + L + F
Sbjct: 339 LAYKELISRLAQHFDV 354
>gnl|CDD|222330 pfam13705, TRC8_N, TRC8 N-terminal domain. This region is found at
the N-terminus of the TRC8 protein. TRC8 is an E3
ubiquitin-protein ligase also known as RNF139. This
region contains 12 transmembrane domains. This region
has been suggested to contain a sterol sensing domain.
It has been found that TRC8 protein levels are sterol
responsive and that it binds and stimulates
ubiquitylation of the endoplasmic reticulum anchor
protein INSIG.
Length = 511
Score = 29.7 bits (67), Expect = 3.7
Identities = 23/122 (18%), Positives = 34/122 (27%), Gaps = 13/122 (10%)
Query: 183 YAYLLNILFNTLAVCFNIYSMEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLDITFPKM 242
Y Y L+ L L+ + + L KY G +D R+ H P M
Sbjct: 75 YLYFLSALLLLLSHLISYSYIMEELPS--KYEGLLHLDTTRLLRSGAHFLLPHLGPQLFM 132
Query: 243 TKCTFYKYGPSDLHHALVLVFPKMTKCTFYKYGPSGTLEVVDAMCLLPLNNLNEKIFIML 302
+ Y VL + L ++ + LPL L L
Sbjct: 133 GQILLY-----------VLCLLGPRYEPLLWLLSAYALPLLARLLGLPLETLKILHNFAL 181
Query: 303 WF 304
Sbjct: 182 SL 183
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 29.7 bits (67), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 409 GNGQVDHDHVESHEPHMSYLCIEI 432
G GQ+DH H+ EP + L ++I
Sbjct: 413 GIGQIDHTHLTKGEPDIGMLVVKI 436
>gnl|CDD|200470 cd11331, AmyAc_OligoGlu_like, Alpha amylase catalytic domain found
in oligo-1,6-glucosidase (also called isomaltase;
sucrase-isomaltase; alpha-limit dextrinase) and related
proteins. Oligo-1,6-glucosidase (EC 3.2.1.10)
hydrolyzes the alpha-1,6-glucosidic linkage of
isomalto-oligosaccharides, pannose, and dextran. Unlike
alpha-1,4-glucosidases (EC 3.2.1.20), it fails to
hydrolyze the alpha-1,4-glucosidic bonds of
maltosaccharides. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 450
Score = 29.2 bits (66), Expect = 4.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 15 NHEKVRIDSRICEFHYRLTTLLLFT 39
NH++ RI SR+ R+ +LL T
Sbjct: 320 NHDQPRIASRVGPAQARVAAMLLLT 344
>gnl|CDD|235217 PRK04069, PRK04069, serine-protein kinase RsbW; Provisional.
Length = 161
Score = 28.4 bits (64), Expect = 5.6
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 345 ILDEELKILLEKLDVGQWFVIDIVRLNLSSLHYK---DFLKA------LVEGFRDKRRLQ 395
I ++ L+I++ D G F + ++ L + L+ L+E D +
Sbjct: 73 IYEDRLEIVVA--DNGVSFDYETLKSKLGPYDISKPIEDLREGGLGLFLIETLMDDVTVY 130
Query: 396 NNNNVILAETGCMGNGQVDHDH 417
++ V ++ T + QV+++
Sbjct: 131 KDSGVTVSMTKYINREQVENNG 152
>gnl|CDD|233640 TIGR01924, rsbW_low_gc, serine-protein kinase RsbW. This model
describes the anti-sigma B factor also known as
serine-protein kinase RsbW. Sigma B controls the general
stress regulon in B subtilis and is activated by cell
stresses such as stationary phase and heat shock. RsbW
binds to sigma B and prevents formation of the
transcription complex at the promoter. RsbV
(anti-anti-sigma factor) binds to RsbW to inhibit
association with sigma B, however RsbW can phosphorylate
RsbV, causing disassociation of the RsbV/RsbW complex.
Low ATP level or environmental stress causes the
dephosphorylation of RsbV..
Length = 159
Score = 27.8 bits (62), Expect = 7.5
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 11/81 (13%)
Query: 345 ILDEELKILLEKLDVGQWFVIDIVRLNLSSL---HYKDFLKA------LVEGFRDKRRLQ 395
I ++ L+I++ D G F +D + +L D L+ L+E D+ +
Sbjct: 73 IYEDRLEIIVS--DQGDSFDMDTFKQSLGPYDGSEPIDDLREGGLGLFLIETLMDEVEVY 130
Query: 396 NNNNVILAETGCMGNGQVDHD 416
++ V +A T + QVD++
Sbjct: 131 EDSGVTVAMTKYLNREQVDNN 151
>gnl|CDD|206339 pfam14171, SpoIISA_toxin, Toxin SpoIISA, type II toxin-antitoxin
system. SpoIISA is a toxin which causes lysis of
vegetatively growing cells. It forms part of a type II
toxin-antitoxin system, where the SpoIISB protein,
pfam14185, acts as an antitoxin. It is a transmembrane
protein, with a cytoplasmic domain accounting for
approximately two-thirds of the protein. The structure
of the cytoplasmic domain resembles that of the GAF
domains, Pfam: PF01590. SpoIISB binds to the cytoplasmic
domain of SpoIISA with high affinity.
Length = 240
Score = 28.1 bits (63), Expect = 9.0
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 11/95 (11%)
Query: 112 YYQWVPIFLFIQALVFLTPHF--LWKCKEGSLMTNLLKTNEHYLIMTTAARKLQFKQVSS 169
Y F FI A +FLTP+ L + + L+ N L M K
Sbjct: 66 YLIVAVFFAFIDAFIFLTPYIKKLGSNELETDTEKTLEANNETLHMYLNRLK-----NFQ 120
Query: 170 YLIKRHGSFYVYAY--AYLLNI--LFNTLAVCFNI 200
YL+K Y AY+ + L A +I
Sbjct: 121 YLLKNEPIHVYYGSKEAYIEGLKELLALYADKMDI 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.141 0.444
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,338,397
Number of extensions: 2190441
Number of successful extensions: 2486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2470
Number of HSP's successfully gapped: 27
Length of query: 434
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 334
Effective length of database: 6,502,202
Effective search space: 2171735468
Effective search space used: 2171735468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (26.9 bits)