RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4810
(434 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 71/492 (14%), Positives = 123/492 (25%), Gaps = 191/492 (38%)
Query: 33 TTLLLFTCTSIISFTQVFGSPINCVQSGSSTKPHPVPEDIMNTFCFTQTTFTYINQDESP 92
T + L C S I + + P V E ++ + Q + ++ +
Sbjct: 164 TWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLY-QIDPNWTSRSDHS 220
Query: 93 LTYPGITSGGDPDDIRYHSYYQWVPIFL----FIQALVFL----TP----HFLWKCKEGS 140
+R HS + L + L+ L F CK
Sbjct: 221 SNIK----------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK--- 267
Query: 141 LMTNLLKTNEHYLIMTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLNILFNTLAVCFNI 200
+++TT +FKQV+ +L + L+ TL
Sbjct: 268 ------------ILLTT-----RFKQVTDFLSAATTTHIS------LDHHSMTLT---PD 301
Query: 201 YSMEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLDIT-FPKMTK---CT--FYKY---- 250
+LL KYL + D R TNP ++ + + T +K+
Sbjct: 302 EVKSLLL----KYLDCRPQD---LPREV-LTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 251 -------------GPSDLHH---ALVLVFPKMTKCTFYKYGPSGTLEVV-------DAM- 286
P++ L VFP P+ L ++ D M
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHI------PTILLSLIWFDVIKSDVMV 406
Query: 287 --------CLLPLNNLNEKIFIML------------------------------------ 302
L+ I I
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 303 ------WFWYLILFCISISYSVMKISQGLAINSRNTLLMKRYFFTSGFILDEELKI---- 352
++ + I + + I L + F F+ E KI
Sbjct: 467 PYLDQYFYSH-------IGHHLKNIEHP-----ERMTLFRMVFLDFRFL---EQKIRHDS 511
Query: 353 -----------LLEKLDVGQWFVIDIVRLNLSSLH-YKDFLKALVEG-FRDKRR------ 393
L++L + ++ D ++ DFL + E K
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 394 LQNNNNVILAET 405
L + I E
Sbjct: 572 LMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.059
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 18/95 (18%)
Query: 313 SISYSVMKISQGLAIN-SRNTLLMKRYFF------TSGFILDEELKILLEKLDVGQW--F 363
S+ + ++ + S+ ++ F T GF D+E E L VG++ +
Sbjct: 15 SLEHVLL-VPTASFFIASQ----LQEQFNKILPEPTEGFAADDEPTTPAE-L-VGKFLGY 67
Query: 364 VIDIVRLNLSSLHYKDFLKALVEGFRDKRRLQNNN 398
V +V + L + F + L+ N+
Sbjct: 68 VSSLVE-PSKVGQFDQVLNLCLTEF-ENCYLEGND 100
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 210
Score = 32.3 bits (74), Expect = 0.19
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 335 MKRYFFTSGFILDEELKILLEKLDVGQWFVIDIVRL---NLSSLHYKDFLKALVEGFRDK 391
MK T+ EE KI+ + G +DI+ L +++ + L + E +
Sbjct: 1 MKLIVVTTPTFFVEEDKIITALFEEG----LDILHLRKPETPAMYSERLLTLIPEKYH-- 54
Query: 392 RRLQNNNNVILA-ETGCMG 409
RR+ + + L E MG
Sbjct: 55 RRIVTHEHFYLKEEFNLMG 73
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation;
1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Length = 333
Score = 30.1 bits (67), Expect = 1.4
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 150 EHYLIMTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLNILFNTLAVCFNIYSMEMLLRG 209
HY + L+ Q+ L G+ V A + N FN + S+E+L +
Sbjct: 71 YHYQTLRANVDSLKIIQIGLALSDEEGNAPVEACTWQFNFTFNLQDDMYAPESIELLTKS 130
Query: 210 YFKY 213
+
Sbjct: 131 GIDF 134
>1z9w_A DHNA, dihydroneopterin aldolase; FOLB, structural genomics, TB ST
genomics; 2.50A {Mycobacterium tuberculosis H37RV} SCOP:
d.96.1.3
Length = 133
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 18/60 (30%)
Query: 345 ILDEELKILLEKLDVGQWFVIDI-VRLNLS----------SLHYKDFLKALVEGFRDKRR 393
+ D E GQ FVID+ V ++L+ + Y E R
Sbjct: 18 VYDHERVA-------GQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPR 70
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.8 bits (65), Expect = 3.9
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 20/79 (25%)
Query: 347 DEELKILLEKL---------------DVGQWFVIDIVRLNLSSL---HYKDFLKALVEGF 388
+ EL+ ++E + V D+ L S+ Y+ L VE
Sbjct: 251 ERELRYVMENIGMKPKLVITDSQVAMKVASDVPEDV-ELTTFSIVESRYRGDLAYFVESV 309
Query: 389 RDKRRLQNNNNVILAETGC 407
R L++ + V++ E GC
Sbjct: 310 RKIEELEDGDTVVIME-GC 327
>1nbu_A DHNA, probable dihydroneopterin aldolase; anti-parallel,
beta-sheet, two alpha helices, structural genomics, PSI;
HET: PH2; 1.60A {Mycobacterium tuberculosis} SCOP:
d.96.1.3 PDB: 1nbu_B* 1nbu_C*
Length = 119
Score = 27.1 bits (61), Expect = 4.7
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 18/60 (30%)
Query: 345 ILDEELKILLEKLDVGQWFVIDI-VRLNLS----------SLHYKDFLKALVEGFRDKRR 393
+ D E GQ FVID+ V ++L+ + Y E R
Sbjct: 18 VYDHERVA-------GQRFVIDVTVWIDLAEAANSDDLADTYDYVRLASRAAEIVAGPPR 70
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase,
antiproliferative protein, transcription; 2.50A {Homo
sapiens} SCOP: c.55.3.9
Length = 252
Score = 28.1 bits (62), Expect = 4.9
Identities = 10/62 (16%), Positives = 20/62 (32%)
Query: 150 EHYLIMTTAARKLQFKQVSSYLIKRHGSFYVYAYAYLLNILFNTLAVCFNIYSMEMLLRG 209
Y ++ L+ Q+ + G + + N FN + S+E+L
Sbjct: 50 YQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTS 109
Query: 210 YF 211
Sbjct: 110 GI 111
>1sql_A Dihydroneopterin aldolase; tetrahydrofolate biosynthesis, aldolase
classes, retroaldol reaction, purin binding, schiff
base, lyase; HET: GUN; 2.20A {Arabidopsis thaliana}
SCOP: d.96.1.3
Length = 146
Score = 27.3 bits (61), Expect = 6.5
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 18/60 (30%)
Query: 345 ILDEELKILLEKLDVGQWFVIDI-VRLNLS----------SLHYKDFLKALVEGFRDKRR 393
+ EE + GQ F++DI ++L ++ Y D E R
Sbjct: 37 AIAEERTL-------GQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSPR 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.444
Gapped
Lambda K H
0.267 0.0597 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,774,968
Number of extensions: 403095
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 14
Length of query: 434
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 338
Effective length of database: 4,021,377
Effective search space: 1359225426
Effective search space used: 1359225426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.8 bits)