RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4810
         (434 letters)



>d1k9oi_ e.1.1.1 (I:) Alaserpin (serpin 1) {Tobacco hornworm
           (Manduca sexta) [TaxId: 7130]}
          Length = 376

 Score = 27.1 bits (59), Expect = 4.0
 Identities = 18/155 (11%), Positives = 41/155 (26%), Gaps = 7/155 (4%)

Query: 203 MEMLLRGYFKYLGAQFIDYMWTRRNATHLTNPLDITFPKMTKCTFYKYGPSDLHHALVLV 262
             ++   YFK           T     H++    I  P M      +Y       A ++ 
Sbjct: 162 SVLVNAIYFKGSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKDVRYADVPELDAKMIE 221

Query: 263 FP-KMTKCTFYKYGPSGTLEVVDAMCLLPLNNLNEKIFIMLWFWYLIL----FCISISYS 317
              +  + +     P+    +      L       +    L+   + +    F I  +  
Sbjct: 222 MSYEGDQASMIIILPNQVDGITALEQKLKDPKALSRAEERLYNTEVEITLPKFKIETTTD 281

Query: 318 VMKISQGLAINSRNTLLMKRYFFTSGFILDEELKI 352
           + ++   + I              +     E L +
Sbjct: 282 LKEVLSNMNIKKL--FTPGAARLENLLKTKESLTV 314


>d1nuia2 g.41.3.2 (A:10-63) Zinc-binding domain of primase-helicase
           {Bacteriophage T7 [TaxId: 10760]}
          Length = 54

 Score = 24.8 bits (54), Expect = 4.0
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 75  TFCFTQTTFTYINQDESPLTYPGITSGGDP 104
           TFC+    +T  N+D          SGG P
Sbjct: 25  TFCYVCEKWTAGNEDTKERASKRKPSGGKP 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.444 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,701,597
Number of extensions: 81150
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 7
Length of query: 434
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 346
Effective length of database: 1,199,356
Effective search space: 414977176
Effective search space used: 414977176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.7 bits)