BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4813
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 113/285 (39%), Gaps = 30/285 (10%)

Query: 5   FSFLSKTINXXXXXXXXXXXLYPLDLVKTRLQIQNLDRHGHQVSFIPFFRKTI------- 57
            SFL   +            + P++ VK  LQ+Q+  +   Q+S    ++  I       
Sbjct: 5   LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASK---QISAEKQYKGIIDCVVRIP 61

Query: 58  KSEGFLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVGR----SVVAGGL 113
           K +GFL  +RG+  + +   P +AL  A  D ++    G  +      R    ++ +GG 
Sbjct: 62  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 121

Query: 114 AAICTLTLQTPMELVKIQMQD------ASTKFTGKKPSAFAIFFDITKTKGIPGLYQGIF 167
           A   +L    P++  + ++        A  +FTG       IF    K+ G+ GLYQG  
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF----KSDGLRGLYQGFN 177

Query: 168 ATGSRDLVFSCILFPLFAYMNERGPKVDDDSRGTRSYWFFIXXXXXXXXXXXXXTPFDVI 227
            +    +++    F ++       P    D +       ++              PFD +
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLP----DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233

Query: 228 KTRLQVKSHENVGH--YSGVWDAGRRIYKTEGIRALFKGGLCRMM 270
           + R+ ++S        Y+G  D  R+I K EG +A FKG    ++
Sbjct: 234 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 278



 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 77/182 (42%), Gaps = 22/182 (12%)

Query: 98  SEEPLSVGRSVVAGGLAAICTLTLQTPMELVK--IQMQDASTKFTGKKPSAFAI--FFDI 153
           S++ LS  +  +AGG+AA  + T   P+E VK  +Q+Q AS + + +K     I     I
Sbjct: 1   SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60

Query: 154 TKTKGIPGLYQGIFATGSRDLVFSCILFPL----FAYMNERGPKVDDDSRGTRSYWFFIX 209
            K +G    ++G  A   R        FP     FA+ ++            + +W +  
Sbjct: 61  PKEQGFLSFWRGNLANVIR-------YFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFA 113

Query: 210 XXXXXXXXXXXXT-----PFDVIKTRLQVKSHENVGH--YSGVWDAGRRIYKTEGIRALF 262
                       +     P D  +TRL     +      ++G+ +   +I+K++G+R L+
Sbjct: 114 GNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLY 173

Query: 263 KG 264
           +G
Sbjct: 174 QG 175


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 28/254 (11%)

Query: 26  YPLDLVKTRLQIQNLDRHGHQVSFIPFFR-------KTIKSEG----FLGMYRGSSVSYL 74
           +PLD  K RLQIQ   +   + +    +R         +++EG    + G+  G      
Sbjct: 20  FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMS 79

Query: 75  FVTPEKALYLASNDFFRHHLAGSSEEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQD 134
           F +    LY +   F+         E   +G  ++AG       + +  P ++VK++ Q 
Sbjct: 80  FASVRIGLYDSVKQFYTK-----GSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQA 134

Query: 135 ASTKFTGKK-PSAFAIFFDITKTKGIPGLYQGIFATGSRDLVFSCILFPLFAYMNERGPK 193
            +    G++  S    +  I + +GI GL++G     +R+ + +C     +  + +   K
Sbjct: 135 QARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194

Query: 194 VD---DDSRGTRSYWFFIXXXXXXXXXXXXXTPFDVIKTRLQVKSHENVGHYSGVWDAGR 250
            +   DD         F              +P DV+KTR     +  +G Y        
Sbjct: 195 ANLMTDDLP-----CHFTSAFGAGFCTTVIASPVDVVKTRYM---NSALGQYHSAGHCAL 246

Query: 251 RIYKTEGIRALFKG 264
            + + EG RA +KG
Sbjct: 247 TMLRKEGPRAFYKG 260


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,109,103
Number of Sequences: 62578
Number of extensions: 303734
Number of successful extensions: 623
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 4
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)