Query psy4813
Match_columns 302
No_of_seqs 154 out of 1602
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 18:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.8E-56 6.2E-61 386.0 17.6 280 9-296 3-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.8E-55 6.1E-60 379.0 21.4 283 3-292 3-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 7.9E-36 2.7E-40 256.4 13.9 192 102-295 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.7E-35 1.9E-39 251.7 15.5 187 5-194 102-289 (303)
5 1pp9_G Ubiquinol-cytochrome C 57.3 5.4 0.00018 26.0 1.9 45 256-302 32-76 (81)
6 3tgu_G UQCRQ, mitochondrial ub 52.2 6.2 0.00021 25.7 1.5 44 257-302 33-76 (81)
7 3f2e_A SIRV coat protein; four 22.8 49 0.0017 21.0 2.0 34 239-272 5-42 (100)
8 2acm_A Mucin-1; auto-catalytic 14.4 48 0.0016 19.9 0.5 19 145-163 41-59 (66)
9 3vjj_A P9-1; 3.00A {Rice black 13.8 64 0.0022 26.2 1.3 34 216-257 274-307 (368)
10 2bnk_A Early protein GP16.7; D 12.8 2.2E+02 0.0076 16.9 3.1 47 218-265 19-65 (67)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.8e-56 Score=385.98 Aligned_cols=280 Identities=20% Similarity=0.318 Sum_probs=251.0
Q ss_pred HHHHHHHHHHHHHhhhcchhhHhHHHHhhccccc-------CCCccchhhhHHHhhcccccccccccccccccccchhHH
Q psy4813 9 SKTINGGISSIIGISILYPLDLVKTRLQIQNLDR-------HGHQVSFIPFFRKTIKSEGFLGMYRGSSVSYLFVTPEKA 81 (302)
Q Consensus 9 ~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~-------~~~~~~~~~~~~~~~~~~G~~gl~rG~~~~~~~~~~~~~ 81 (302)
.++++|++|++++.++++|+|+||+|+|++.... .....+..+++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999986432 123478999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHhcccHHHHHHHHHhcccc-cCCCCCchHHHHHHHHHhcCcc
Q psy4813 82 LYLASNDFFRHHLAGSSEEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQDASTK-FTGKKPSAFAIFFDITKTKGIP 160 (302)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pl~~ik~r~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~ 160 (302)
++|.+||.+++.+.+.. +..+....+++|++||+++.++++|+|++|+|+|++... ...+|.+.++++++|+++||++
T Consensus 83 i~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 99999999999987642 246778899999999999999999999999999998652 2246889999999999999999
Q ss_pred ccccchhhHHHHHhhhhhhhhhHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHhhhhccccCchhHHHHhhhccCCCCCC
Q psy4813 161 GLYQGIFATGSRDLVFSCILFPLFAYMNERGPKVDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTRLQVKSHENVG 240 (302)
Q Consensus 161 ~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~q~~~~~~~~ 240 (302)
+||||+.+++++.++..+++|.+||.+|+.+.+... ...+....+++|++|+++++++++|+|+||+|+|.+ ...
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~--~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~---~~~ 236 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANL--MTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS---ALG 236 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTS--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CSS
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc---ccc
Confidence 999999999999999999999999999998876432 235667889999999999999999999999999997 334
Q ss_pred ccccHHHHHHHHHHHhChhhhcccchhhHhhhcccchhhhHHhHHHHHHHHhccCC
Q psy4813 241 HYSGVWDAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVYLMNIAENFLGIGN 296 (302)
Q Consensus 241 ~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~ 296 (302)
.|.++++|+++++++||++|||||+.++++|.+|..+++|.+| |.+++.+....
T Consensus 237 ~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~y--e~~k~~l~~~~ 290 (303)
T 2lck_A 237 QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY--EQLKRALMAAY 290 (303)
T ss_dssp SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHH--HHHHSCCCCHH
T ss_pred ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHH--HHHHHHHHHhc
Confidence 6999999999999999999999999999999999999999999 99999886543
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-55 Score=378.96 Aligned_cols=283 Identities=22% Similarity=0.370 Sum_probs=242.6
Q ss_pred CCcchHHHHHHHHHHHHHHhhhcchhhHhHHHHhhccccc----CCCccchhhhHHHhhcccccccccccccccccccch
Q psy4813 3 GEFSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDR----HGHQVSFIPFFRKTIKSEGFLGMYRGSSVSYLFVTP 78 (302)
Q Consensus 3 ~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~----~~~~~~~~~~~~~~~~~~G~~gl~rG~~~~~~~~~~ 78 (302)
++.+.+..+++|++||+++.++++|+|+||+|+|++.... .....+..+++++++++||++|||||+.+++++.++
T Consensus 3 ~~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFP 82 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHH
Confidence 4467889999999999999999999999999999986421 112378999999999999999999999999999999
Q ss_pred hHHHHHHhHHHHHHHhcCCCCCC----CchhhHHHHHHHHHHHHHHhcccHHHHHHHHHhccccc--CCCCCchHHHHHH
Q psy4813 79 EKALYLASNDFFRHHLAGSSEEP----LSVGRSVVAGGLAAICTLTLQTPMELVKIQMQDASTKF--TGKKPSAFAIFFD 152 (302)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~a~~~~~~i~~Pl~~ik~r~q~~~~~~--~~~~~~~~~~~~~ 152 (302)
..+++|.+||.+++.+....+.. ......+++|++||+++.++++|+|+||+|+|++.... ..+|.+.++++++
T Consensus 83 ~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~ 162 (297)
T 1okc_A 83 TQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHH
Confidence 99999999999999543321221 13467889999999999999999999999999985422 2468899999999
Q ss_pred HHHhcCccccccchhhHHHHHhhhhhhhhhHHHHHhhcCCCCCCCCCCCchhHHHHHHHHHhhhhccccCchhHHHHhhh
Q psy4813 153 ITKTKGIPGLYQGIFATGSRDLVFSCILFPLFAYMNERGPKVDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTRLQ 232 (302)
Q Consensus 153 i~~~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~q 232 (302)
++++||+++||||+.+++++.++..+++|.+||.+|+.+.+.. +.+....+++|++|+++++++++|+|+||+|+|
T Consensus 163 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 9999999999999999999999999999999999999775432 256677899999999999999999999999999
Q ss_pred ccCCC--CCCccccHHHHHHHHHHHhChhhhcccchhhHhhhcccchhhhHHhHHHHHHHHh
Q psy4813 233 VKSHE--NVGHYSGVWDAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVYLMNIAENFL 292 (302)
Q Consensus 233 ~~~~~--~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 292 (302)
.+... ....|.++++|+++|+++||++|||||+.++++|.. ..+++|.+| |.+++.+
T Consensus 239 ~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~-~~~~~f~~y--e~~k~~l 297 (297)
T 1okc_A 239 MQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM-GGAFVLVLY--DEIKKFV 297 (297)
T ss_dssp TTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHH-HHHHHHHHH--HTC----
T ss_pred hcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhc-cceeeehHH--HHHHhhC
Confidence 87321 234689999999999999999999999999999964 689999999 9988754
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=7.9e-36 Score=256.42 Aligned_cols=192 Identities=21% Similarity=0.248 Sum_probs=165.9
Q ss_pred CchhhHHHHHHHHHHHHHHhcccHHHHHHHHHhccccc----CCCCCchHHHHHHHHHhcCccccccchhhHHHHHhhhh
Q psy4813 102 LSVGRSVVAGGLAAICTLTLQTPMELVKIQMQDASTKF----TGKKPSAFAIFFDITKTKGIPGLYQGIFATGSRDLVFS 177 (302)
Q Consensus 102 ~~~~~~~~~g~~a~~~~~~i~~Pl~~ik~r~q~~~~~~----~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~ 177 (302)
.+.+..+++|++||+++.++++|+|++|+|+|++.... ..+|++.++++++++++||+++||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45677899999999999999999999999999986421 23688999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhhcCCCCCCCCCC--CchhHHHHHHHHHhhhhccccCchhHHHHhhhccCC--CCCCccccHHHHHHHHH
Q psy4813 178 CILFPLFAYMNERGPKVDDDSRG--TRSYWFFISGSVSGSAAALLSTPFDVIKTRLQVKSH--ENVGHYSGVWDAGRRIY 253 (302)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~Pld~i~~r~q~~~~--~~~~~~~~~~~~~~~i~ 253 (302)
+++|.+||.+|+.+....+.... ......+++|.+|+++++++++|+|+||+|+|++.. .....|.+.++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999853222111111 234667899999999999999999999999999732 22457899999999999
Q ss_pred HHhChhhhcccchhhHhhhcccchhhhHHhHHHHHHHHhccC
Q psy4813 254 KTEGIRALFKGGLCRMMIMAPMFGILQMVYLMNIAENFLGIG 295 (302)
Q Consensus 254 ~~~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 295 (302)
++||++|||||+.+++++.+|..++.|.+| |.+++.+...
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~y--e~~k~~~~~~ 204 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVY--DTAKGMLPDP 204 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHH--HHHHHSSCGG
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHH--HHHHHHhccC
Confidence 999999999999999999999999999999 9999988643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.7e-35 Score=251.67 Aligned_cols=187 Identities=17% Similarity=0.264 Sum_probs=169.4
Q ss_pred cchHHHHHHHHHHHHHHhhhcchhhHhHHHHhhcccccC-CCccchhhhHHHhhcccccccccccccccccccchhHHHH
Q psy4813 5 FSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRH-GHQVSFIPFFRKTIKSEGFLGMYRGSSVSYLFVTPEKALY 83 (302)
Q Consensus 5 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~q~~~~~~~-~~~~~~~~~~~~~~~~~G~~gl~rG~~~~~~~~~~~~~~~ 83 (302)
.+....+++|++||+++.++++|+|+||+|+|++..... ....+..+++++++++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999864211 2337899999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHhcccHHHHHHHHHhcccccCCCCCchHHHHHHHHHhcCccccc
Q psy4813 84 LASNDFFRHHLAGSSEEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQDASTKFTGKKPSAFAIFFDITKTKGIPGLY 163 (302)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pl~~ik~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly 163 (302)
|.+||.+++.+.+......+....+++|++||+++.++++|+|+||+|+|.+.. .+|.++++++++++++||+++||
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~---~~y~~~~~~~~~i~~~eG~~gly 258 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL---GQYHSAGHCALTMLRKEGPRAFY 258 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SSCCSHHHHHHHHHHSSCTHHHH
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc---cccCCHHHHHHHHHHHcChHHhh
Confidence 999999999987654445667788999999999999999999999999999865 36889999999999999999999
Q ss_pred cchhhHHHHHhhhhhhhhhHHHHHhhcCCCC
Q psy4813 164 QGIFATGSRDLVFSCILFPLFAYMNERGPKV 194 (302)
Q Consensus 164 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (302)
||+.|+++|.+|..+++|.+||.+|+.+.+.
T Consensus 259 rG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 259 KGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887653
No 5
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=57.35 E-value=5.4 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=35.3
Q ss_pred hChhhhcccchhhHhhhcccchhhhHHhHHHHHHHHhccCCCCCCCC
Q psy4813 256 EGIRALFKGGLCRMMIMAPMFGILQMVYLMNIAENFLGIGNGGEPDE 302 (302)
Q Consensus 256 ~G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~ 302 (302)
+|+...+|-+..+.+..+|...+...+| ++.++....-....|+|
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~--~Wa~~~~e~~~rKnp~d 76 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVY--TWGTQEFEKSKRKNPAA 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTSSCC--
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHH--HHHHHHHHHHhCCCHHH
Confidence 3556666667777788999999999999 99999998887777765
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=52.17 E-value=6.2 Score=25.75 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=34.1
Q ss_pred ChhhhcccchhhHhhhcccchhhhHHhHHHHHHHHhccCCCCCCCC
Q psy4813 257 GIRALFKGGLCRMMIMAPMFGILQMVYLMNIAENFLGIGNGGEPDE 302 (302)
Q Consensus 257 G~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~ 302 (302)
|+...+|-+..+++..+|...+...+| ++.++....-....|+|
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~--~Wa~~~ne~l~rKnpad 76 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLY--SWGTQEFERLKRKNPAD 76 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTSCCGGG
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHH--HHHHHHHHHHhCCCHHH
Confidence 445555556667888999999999999 99999887777766653
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=22.80 E-value=49 Score=21.01 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCccccHHHHHHHHHHHhCh----hhhcccchhhHhhh
Q psy4813 239 VGHYSGVWDAGRRIYKTEGI----RALFKGGLCRMMIM 272 (302)
Q Consensus 239 ~~~~~~~~~~~~~i~~~~G~----~~ly~G~~~~~~~~ 272 (302)
.+++.+.-+-+..++.+-|+ +++|+|+...+.|.
T Consensus 5 vpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 5 VPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp ---CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 45566666667777777775 66888888766553
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=14.45 E-value=48 Score=19.92 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.7
Q ss_pred chHHHHHHHHHhcCccccc
Q psy4813 145 SAFAIFFDITKTKGIPGLY 163 (302)
Q Consensus 145 ~~~~~~~~i~~~~G~~~ly 163 (302)
++.+.+-+|++++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5677788899999998876
No 9
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=13.78 E-value=64 Score=26.21 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=25.1
Q ss_pred hhccccCchhHHHHhhhccCCCCCCccccHHHHHHHHHHHhC
Q psy4813 216 AAALLSTPFDVIKTRLQVKSHENVGHYSGVWDAGRRIYKTEG 257 (302)
Q Consensus 216 ~~~~~~~Pld~i~~r~q~~~~~~~~~~~~~~~~~~~i~~~~G 257 (302)
++++=-||||.+|-.++.. -++...+++.+.++|
T Consensus 274 LaTFdnypfdllRfqL~Sl--------istp~~I~e~i~K~G 307 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSL--------ISTPALIREKIAKEG 307 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSC--------CCCCHHHHHHHHHSC
T ss_pred eecCCCCCHHHHHHHhhhh--------ccChHHHHHHHHhcC
Confidence 3456679999998877765 444567788888886
No 10
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=12.85 E-value=2.2e+02 Score=16.88 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=29.5
Q ss_pred ccccCchhHHHHhhhccCCCCCCccccHHHHHHHHHHHhChhhhcccc
Q psy4813 218 ALLSTPFDVIKTRLQVKSHENVGHYSGVWDAGRRIYKTEGIRALFKGG 265 (302)
Q Consensus 218 ~~~~~Pld~i~~r~q~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~ 265 (302)
+-+--|+|+|---. .+.-.....-.++.+.-|..|+=|.-+-+|||.
T Consensus 19 SnIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLEN~KKly~g~ 65 (67)
T 2bnk_A 19 SNIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLENQKKLYRGS 65 (67)
T ss_dssp TTCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHHTTSCCCCSC
T ss_pred cCCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhhhhHHHHhcc
Confidence 34567999887443 211112223345566667888888889999985
Done!