RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4813
(302 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 86.9 bits (216), Expect = 1e-21
Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 207 FISGSVSGSAAALLSTPFDVIKTRLQVKSHENVGHYSGVWDAGRRIYKTEGIRALFKGGL 266
++G ++G+ AA ++ P DV+KTRLQ + Y G+ D ++IYK EGIR L+KG L
Sbjct: 9 LLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLL 68
Query: 267 CRMMIMAPMFGILQMVY 283
++ +AP I Y
Sbjct: 69 PNLLRVAPAAAIYFGTY 85
Score = 78.1 bits (193), Expect = 2e-18
Identities = 31/96 (32%), Positives = 46/96 (47%)
Query: 3 GEFSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGF 62
SFL+ + GGI+ I ++ YPLD+VKTRLQ + F+K K EG
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 63 LGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSS 98
G+Y+G + L V P A+Y + + + L
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 62.3 bits (152), Expect = 1e-12
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 100 EPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQDASTKFTGKKPSAFAIFFDITKTKGI 159
PLS S++AGG+A T+ P+++VK ++Q ++ + K F I K +GI
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60
Query: 160 PGLYQGIFATGSRDLVFSCILFPLFAYMNER 190
GLY+G+ R + I F + + +
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKL 91
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 72.9 bits (179), Expect = 9e-15
Identities = 70/298 (23%), Positives = 135/298 (45%), Gaps = 32/298 (10%)
Query: 6 SFLSKTINGGISSIIGISILYPLDLVKTRLQIQ---------NLDRHGHQVSFIPFFRKT 56
+F + + GGIS+ I + + P++ VK +Q Q + R+ + FR+
Sbjct: 6 NFATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYS---GIVNCFRRV 62
Query: 57 IKSEGFLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEP---LSVGRSVVAGGL 113
K +G L ++RG++ + + P +A A D+F++ +++ G ++++GGL
Sbjct: 63 SKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGL 122
Query: 114 AAICTLTLQTPMELVKIQM-----QDASTKFTGKKPSAFAIFFDITKTKGIPGLYQGIFA 168
A +L + P++ + ++ + +FTG F I+K G LYQG
Sbjct: 123 AGASSLLIVYPLDFARTRLASDIGKGGDREFTG----LFDCLMKISKQTGFLSLYQGFGV 178
Query: 169 TGSRDLVFSCILFPLFAYMNERGPKVDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIK 228
+ +V+ F L Y + + +D Y + ++ +V+ A L+S PFD ++
Sbjct: 179 SVQGIIVYRGAYFGL--YDSAKALLFGNDKNTNILYKWAVAQTVT-ILAGLISYPFDTVR 235
Query: 229 TRLQVKSHENVGH---YSGVWDAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVY 283
R+ + S Y+G D ++I K EG+ FKG ++ G L +V+
Sbjct: 236 RRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWA--NVLRGAGGALVLVF 291
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 59.6 bits (144), Expect = 2e-10
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 24/221 (10%)
Query: 12 INGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGFLGMYRGSSV 71
+ G +S +I ++LYP+D +KT +Q + F IK +Y G
Sbjct: 8 VTGALSGVIVDAVLYPIDSIKTNIQAKK-----------SFSFSDIKK-----LYSGILP 51
Query: 72 SYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQ 131
+ + P A + + + L E +++ +A I ++ P E+VK
Sbjct: 52 TLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLPFEIVKQN 111
Query: 132 MQDASTKFTGKKPSAFAIFFDITKTKGIPG-LYQGIFATGSRDLVFSCILFPLFAYMNER 190
MQ + S ++IT+ +G+P L + F R++ F CI + L+ + E+
Sbjct: 112 MQVSGNI------SVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWETLKEK 165
Query: 191 GPK-VDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTR 230
K S+ S I G ++G A L+TP DVIK+R
Sbjct: 166 AKKDFGKFSKKYPSITSAICGGLAGGIAGFLTTPVDVIKSR 206
Score = 34.9 bits (80), Expect = 0.034
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 22/136 (16%)
Query: 106 RSVVAGGLAAICTLTLQTPMELVKIQMQDASTKFTGKKPSAFAIFFDITKTKGIPGLYQG 165
++V G L+ + + P++ +K +Q A F+ F DI K LY G
Sbjct: 5 HNLVTGALSGVIVDAVLYPIDSIKTNIQ-AKKSFS---------FSDIKK------LYSG 48
Query: 166 IFATGSRDLVFSCILFPLFAYMNERGPKVDDDSRG--TRSYWFFISGSVSGSAAALLSTP 223
I T LV + F E K+ + R +++ + IS S++ A ++ P
Sbjct: 49 ILPT----LVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIVRLP 104
Query: 224 FDVIKTRLQVKSHENV 239
F+++K +QV + +V
Sbjct: 105 FEIVKQNMQVSGNISV 120
Score = 28.4 bits (63), Expect = 4.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 8 LSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGFLGMYR 67
++ I GG++ I + P+D++K+R I + S+I I EG+L Y+
Sbjct: 180 ITSAICGGLAGGIAGFLTTPVDVIKSRQII-------YGKSYIETV-TEIAEEGYLTFYK 231
Query: 68 GSSV--SYLF 75
G SYLF
Sbjct: 232 GCCFRSSYLF 241
>gnl|CDD|99865 cd06112, citrate_synt_like_1_1, Citrate synthase (CS) catalyzes the
condensation of acetyl coenzyme A (AcCoA) and
oxalacetate (OAA) to form citrate and coenzyme A (CoA),
the first step in the oxidative citric acid cycle (TCA
or Krebs cycle). Peroxisomal CS is involved in the
glyoxylate cycle. This group also includes CS proteins
which functions as a 2-methylcitrate synthase (2MCS).
2MCS catalyzes the condensation of propionyl-CoA (PrCoA)
and OAA to form 2-methylcitrate and CoA during
propionate metabolism. This group contains proteins
which functions exclusively as either a CS or a 2MCS, as
well as those with relaxed specificity which have dual
functions as both a CS and a 2MCS. The overall CS
reaction is thought to proceed through three partial
reactions and involves both closed and open
conformational forms of the enzyme: a) the carbanion or
equivalent is generated from AcCoA by base abstraction
of a proton, b) the nucleophilic attack of this
carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs
are strongly and specifically inhibited by NADH through
an allosteric mechanism.
Length = 373
Score = 29.7 bits (67), Expect = 2.2
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 14/64 (21%)
Query: 211 SVSGSAAALLSTPF------DVIKTRLQVKSHENVGHY--------SGVWDAGRRIYKTE 256
+V SA LS P DV++ ++ S ENV Y +W G R+YKT+
Sbjct: 205 AVISSAIGTLSGPLHGGANEDVLEMLEEIGSPENVKAYLDKKLANKQKIWGFGHRVYKTK 264
Query: 257 GIRA 260
RA
Sbjct: 265 DPRA 268
>gnl|CDD|238789 cd01531, Acr2p, Eukaryotic arsenate resistance proteins are members
of the Rhodanese Homology Domain superfamily. Included
in this CD is the Saccharomyces cerevisiae arsenate
reductase protein, Acr2p, and other yeast and plant
homologs.
Length = 113
Score = 27.8 bits (62), Expect = 3.1
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 159 IPGLYQGIFATGSRDLVFSCILFPLFAYMNERGPKV 194
+ L Q + + +VF C A RGP
Sbjct: 50 LNQLVQLLSGSKKDTVVFHC------ALSQVRGPSA 79
>gnl|CDD|237591 PRK14036, PRK14036, citrate synthase; Provisional.
Length = 377
Score = 28.4 bits (64), Expect = 5.4
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 211 SVSGSAAALLSTPF------DVIKTRLQVKSHENVGHY--------SGVWDAGRRIYKTE 256
+V SA L+ P DV+ ++ S ENV Y + G R YK +
Sbjct: 206 AVIASAVGTLAGPLHGGANEDVLAMLEEIGSVENVRPYLDERLANKQKIMGFGHREYKVK 265
Query: 257 GIRA 260
RA
Sbjct: 266 DPRA 269
>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to
the NADPH cytochrome p450 reductases (CYPOR), but lack
the FAD-binding region connecting sub-domain.
Ferredoxin-NADP+ reductase (FNR) is an FAD-containing
enzyme that catalyzes the reversible electron transfer
between NADP(H) and electron carrier proteins, such as
ferredoxin and flavodoxin. Isoforms of these
flavoproteins (i.e. having a non-covalently bound FAD as
a prosthetic group) are present in chloroplasts,
mitochondria, and bacteria in which they participate in
a wide variety of redox metabolic pathways. The
C-terminal domain contains most of the NADP(H) binding
residues and the N-terminal domain interacts
non-covalently with the isoalloxazine rings of the
flavin molecule which lies largely in a large gap
between the two domains. Ferredoxin-NADP+ reductase
first accepts one electron from reduced ferredoxin to
form a flavin semiquinone intermediate. The enzyme then
accepts a second electron to form FADH2, which then
transfers two electrons and a proton to NADP+ to form
NADPH. CYPOR serves as an electron donor in several
oxygenase systems and is a component of nitric oxide
synthases, sulfite reducatase, and methionine synthase
reductases. CYPOR transfers two electrons from NADPH to
the heme of cytochrome p450 via FAD and FMN. CYPOR has
a C-terminal FNR-like FAD and NAD binding module, an
FMN-binding domain, and an additional connecting domain
(inserted within the FAD binding region) that orients
the FNR and FMN -binding domains. The C-terminal domain
contains most of the NADP(H) binding residues, and the
N-terminal domain interacts non-covalently with the
isoalloxazine rings of the flavin molecule, which lies
largely in a large gap betweed the two domains.
Ferredoxin-NADP+ reductase first accepts one electron
from reduced ferredoxin to form a flavin semiquinone
intermediate. The enzyme then accepts a second electron
to form FADH2 which then transfers two electrons and a
proton to NADP+ to form NADPH.
Length = 286
Score = 27.7 bits (62), Expect = 8.0
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 62 FLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVG 105
F G+ S S L+ + D FR A S E+ + G
Sbjct: 174 FFGVPN--SDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADG 215
>gnl|CDD|215940 pfam00483, NTP_transferase, Nucleotidyl transferase. This family
includes a wide range of enzymes which transfer
nucleotides onto phosphosugars.
Length = 247
Score = 27.5 bits (62), Expect = 8.6
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 18/94 (19%)
Query: 8 LSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQVSFI--PFFRKT----IKSEG 61
LS+ +N GI I I LV Q+ + + G QV++ P R T +
Sbjct: 38 LSRLMNAGIREPIVICTQEHRFLVAE--QLGDGSKFGLQVTYALQPEPRGTAPAVALAAD 95
Query: 62 FLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLA 95
FLG PE L L + +R
Sbjct: 96 FLGDDD----------PELVLVLGGDHIYRMDFE 119
>gnl|CDD|107088 PHA01818, PHA01818, hypothetical protein.
Length = 458
Score = 27.7 bits (61), Expect = 9.5
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 181 FPLFAYMNERGP---KVDD--DSRGTRSYWFFISGSVSGS 215
FPL Y ++ + D D G ++ F++ G VSGS
Sbjct: 248 FPLLVYTSDSKTFQQAIIDHIDRTGQTTFTFYVQGGVSGS 287
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.140 0.416
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,471,963
Number of extensions: 1478409
Number of successful extensions: 1104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 20
Length of query: 302
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 206
Effective length of database: 6,679,618
Effective search space: 1376001308
Effective search space used: 1376001308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)