RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4813
(302 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 186 bits (475), Expect = 7e-58
Identities = 64/294 (21%), Positives = 123/294 (41%), Gaps = 17/294 (5%)
Query: 2 NGEFSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQV----SFIPFFRKTI 57
+ SFL + GG+++ I + + P++ VK LQ+Q+ + I +
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 58 KSEGFLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVGR----SVVAGGL 113
K +GFL +RG+ + + P +AL A D ++ G + R ++ +GG
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 121
Query: 114 AAICTLTLQTPMELVKIQMQDASTKFTGKK--PSAFAIFFDITKTKGIPGLYQGIFATGS 171
A +L P++ + ++ K ++ I K+ G+ GLYQG +
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181
Query: 172 RDLVFSCILFPLFAYMNERGPKVDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTRL 231
+++ F ++ P D + ++ + A L+S PFD ++ R+
Sbjct: 182 GIIIYRAAYFGVYDTAKGMLP----DPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRM 237
Query: 232 QVKSHENVG--HYSGVWDAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVY 283
++S Y+G D R+I K EG +A FKG ++ + ++Y
Sbjct: 238 MMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLY 290
Score = 97.3 bits (243), Expect = 8e-24
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 8/175 (4%)
Query: 98 SEEPLSVGRSVVAGGLAAICTLTLQTPMELVKI--QMQDASTKFTGKKP--SAFAIFFDI 153
S++ LS + +AGG+AA + T P+E VK+ Q+Q AS + + +K I
Sbjct: 1 SDQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRI 60
Query: 154 TKTKGIPGLYQGIFATGSRDLVFSCILFPLF-AYMNERGPKVDDDSRGTRSYWF-FISGS 211
K +G ++G A R + F Y VD + R + SG
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGG 120
Query: 212 VSGSAAALLSTPFDVIKTRL--QVKSHENVGHYSGVWDAGRRIYKTEGIRALFKG 264
+G+ + P D +TRL V ++G+ + +I+K++G+R L++G
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQG 175
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 182 bits (464), Expect = 5e-56
Identities = 55/280 (19%), Positives = 112/280 (40%), Gaps = 14/280 (5%)
Query: 12 INGGISSIIGISILYPLDLVKTRLQIQ-------NLDRHGHQVSFIPFFRKTIKSEGFLG 64
+ G ++ I I +PLD K RLQIQ + +++EG
Sbjct: 6 LGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRS 65
Query: 65 MYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVGRSVVAGGLAAICTLTLQTP 124
+Y G ++ + D + SE +G ++AG + + P
Sbjct: 66 LYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQP 124
Query: 125 MELVKIQMQDASTKFTGKK-PSAFAIFFDITKTKGIPGLYQGIFATGSRDLVFSCILFPL 183
++VK++ Q + G++ S + I + +GI GL++G +R+ + +C
Sbjct: 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184
Query: 184 FAYMNERGPKVDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTRLQVKSHENVGHYS 243
+ + + K + + + F S +G ++++P DV+KTR + +G Y
Sbjct: 185 YDLIKDTLLKANLMTDDLPCH--FTSAFGAGFCTTVIASPVDVVKTRYM---NSALGQYH 239
Query: 244 GVWDAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVY 283
+ + EG RA +KG + + + ++ + Y
Sbjct: 240 SAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Score = 83.5 bits (207), Expect = 9e-19
Identities = 33/189 (17%), Positives = 79/189 (41%), Gaps = 4/189 (2%)
Query: 2 NGEFSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQV-SFIPFFRKTIKSE 60
+ S+ + G + + +++ P D+VK R Q Q G + S + ++ + E
Sbjct: 99 SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158
Query: 61 GFLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVGRSVVAGGLAAICTLT 120
G G+++G+S + L + D + L ++ + + A CT
Sbjct: 159 GIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTV 218
Query: 121 LQTPMELVKIQMQDASTKFTGKKPSAFAIFFDITKTKGIPGLYQGIFATGSRDLVFSCIL 180
+ +P+++VK + +++ G+ SA + + +G Y+G + R ++ ++
Sbjct: 219 IASPVDVVKTRYMNSA---LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVM 275
Query: 181 FPLFAYMNE 189
F + +
Sbjct: 276 FVTYEQLKR 284
Score = 67.3 bits (165), Expect = 4e-13
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 207 FISGSVSGSAAALLSTPFDVIKTRLQV-------KSHENVGHYSGVWDAGRRIYKTEGIR 259
F+ + A L++ P D K RLQ+ Y GV + +TEG R
Sbjct: 5 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 260 ALFKG---GLCRMMIM 272
+L+ G GL R M
Sbjct: 65 SLYNGLVAGLQRQMSF 80
Score = 54.2 bits (131), Expect = 1e-08
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 7 FLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGFLGMY 66
F S G +++I P+D+VKTR L ++ S ++ EG Y
Sbjct: 206 FTSAFGAGFCTTVIAS----PVDVVKTRYMNSALGQYH---SAGHCALTMLRKEGPRAFY 258
Query: 67 RGSSVSYLFVTPEKALYLASNDFFRHHL 94
+G S+L + + + + + L
Sbjct: 259 KGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 5e-05
Identities = 50/270 (18%), Positives = 84/270 (31%), Gaps = 87/270 (32%)
Query: 21 GISILYPLDLVK---TRLQIQNLDRHGHQV-------SFIPFFRKTIKSEGFLGMYRGSS 70
G SIL D+V L I G ++ F +K+E S
Sbjct: 1658 GFSIL---DIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS 1714
Query: 71 VSYLFVTPEK----------ALYLASNDFFRHHLAGSSEEPLSVGRSVVAG---G----L 113
SY F + + AL L F L + L + AG G L
Sbjct: 1715 TSYTFRSEKGLLSATQFTQPALTLMEKAAFE-DLK---SKGLIPADATFAGHSLGEYAAL 1770
Query: 114 AAIC-TLTLQTPMELVKI---QMQDASTKFT--GKKPSAFAIFFDITKTKGIPGLYQGIF 167
A++ +++++ +E+V MQ A + AI PG +
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI---------NPGR---VA 1818
Query: 168 ATGSRDLVFSCILFPLFAYMNERGPKVDDDSRGTRSYWF-----F-ISGS---VSGSAAA 218
A+ S++ + + + G R+ W + + +G A
Sbjct: 1819 ASFSQEALQYVV-----------------ERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 219 L--LSTPFDVIKTR------LQVKSH-ENV 239
L ++ + IK + LQ E V
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 39.6 bits (92), Expect = 0.001
Identities = 32/185 (17%), Positives = 52/185 (28%), Gaps = 56/185 (30%)
Query: 144 PSAFAIFFDITKTKGIPGLYQGIFATGSRDLVFSCILFPLFAYMNERGPKVDDDSRGTRS 203
P I F K K I Y + D +F +NE + S
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVD--GKLKTEKIFKEINEH----------STS 1716
Query: 204 YWFFISGSVSGSAAALLST----P---------FDVIKTRLQVKSHENV-GH----YS-- 243
Y F L +T P F+ +K++ + + GH Y+
Sbjct: 1717 YTF------RSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL 1770
Query: 244 ----GVW---DAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVYLMNIAENFLGIGN 296
V + +F G+ M + P + + Y M IA N +
Sbjct: 1771 ASLADVMSIESL---------VEVVFYRGMT-MQVAVPRDELGRSNYGM-IAINPGRVAA 1819
Query: 297 GGEPD 301
+
Sbjct: 1820 SFSQE 1824
Score = 36.6 bits (84), Expect = 0.010
Identities = 62/341 (18%), Positives = 94/341 (27%), Gaps = 145/341 (42%)
Query: 28 LDLVKTR-LQIQNLDRHGH-QVSF-IP------------FFRKTIK--SEGFLGMYRGSS 70
+D TR L + HG + +P F K + +EGF ++
Sbjct: 1 MDAYSTRPLTLS----HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 71 V-----SYL-FVTPE----------KALYLASNDFFRHHLAGSSEEPLSVGRSV--VAGG 112
+L +V+ + L L +F +L G + +A
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEG---------NDIHALAAK 107
Query: 113 LAAICTLTLQTPMELVKI---QMQDASTKFTGKKPSA------------FAIFFDITKTK 157
L TL EL+K A F K SA AIF
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------- 160
Query: 158 GIPGLYQGIFATGSRDLVFSCILFPLFAYMNE-R------GPKVDDDSRGTRSYWFFISG 210
G G QG Y E R V D I
Sbjct: 161 G--G--QGNTDD----------------YFEELRDLYQTYHVLVGD----------LIK- 189
Query: 211 SVSGSAAALLSTPFDVIKTRLQVKSHENVGHYSGV----W--DAGRR---IYKTEGIRAL 261
+A LS ++I+T L + G+ W + Y
Sbjct: 190 ----FSAETLS---ELIRTTLDAEKV----FTQGLNILEWLENPSNTPDKDY-------- 230
Query: 262 FKGGLCRMMIMAPMFGILQMVYLMNIAENFLGIGNGGEPDE 302
L + I P+ G++Q+ + + A+ G P E
Sbjct: 231 ----LLSIPISCPLIGVIQLAHYVVTAKLL-----GFTPGE 262
Score = 30.4 bits (68), Expect = 1.0
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 38/139 (27%)
Query: 3 GEFSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGF 62
GE++ L+ ++ ++ I L +++V R G T++
Sbjct: 1765 GEYAALA-----SLADVMSIESL--VEVVFYR---------G----------MTMQVAVP 1798
Query: 63 LGMYRGSSVSYLFVTPEKALYLASNDFFRH---HLAGSSEEPLSV------GRSVVAGG- 112
S+ + + P + S + ++ + + + + + VA G
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
Query: 113 LAAICTLTLQTPMELVKIQ 131
L A+ T+T + +K+Q
Sbjct: 1859 LRALDTVT--NVLNFIKLQ 1875
>3j15_A Protein pelota; ribosome recycling, ribosome, archaea,
translation-transport complex; HET: ADP; 6.60A
{Pyrococcus furiosus}
Length = 357
Score = 28.2 bits (62), Expect = 3.6
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 4/128 (3%)
Query: 31 VKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGFLGMYRGSSVSYLFVTPEK--ALYLASND 88
+ L +Q + H+ + I + G + +
Sbjct: 59 IPVFLGVQAEKINFHKFANQVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKE 118
Query: 89 FFRHHL--AGSSEEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQDASTKFTGKKPSA 146
L A ++ + V V+ G A + + L I+ ++ + S
Sbjct: 119 HHIERLKEAVAASKRARVMIVVIDDGEADMALVREYGVEILNSIRHNLGGKRYNTDRESE 178
Query: 147 FAIFFDIT 154
FF
Sbjct: 179 EMKFFHDV 186
>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell
cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1
c.55.4.2 d.79.3.2
Length = 347
Score = 27.4 bits (60), Expect = 5.5
Identities = 9/105 (8%), Positives = 27/105 (25%), Gaps = 3/105 (2%)
Query: 30 LVKTRLQIQNLDRHGHQVSFIPFFRKTIKSEGFLGMYRGSSVSY-LFVTPEKALYLASND 88
+ RL+++ ++ E G ++ +V+ ++ K
Sbjct: 60 PITIRLKVEKIEFQDFDNRLRILGTVIEGPEDTKGKHQSITVTVDSEISITKEWD--DQH 117
Query: 89 FFRHHLAGSSEEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQ 133
A + + A I + ++ +
Sbjct: 118 IDLLKEATDEKYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSG 162
>2xzm_D Ribosomal protein S4 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_D
Length = 181
Score = 27.0 bits (59), Expect = 6.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 23 SILYPLDLVKTRLQIQNLDRHGH-----QVSFIPFFRKTIKSEGFLGMYRGS 69
+ ++ L+L + + L R H + +P F SE + S
Sbjct: 111 TRVFKLNLANSIHHSRVLIRQRHIKVGKNLVNVPSFMVRTDSEKSIDFASTS 162
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 27.2 bits (61), Expect = 7.2
Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 194 VDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTRLQVKSHENVGHYSGV 245
++ DS G R+++++ + +AA + + ++ + + SG+
Sbjct: 92 IETDSTGERTFYYW----RNEAAAKFW-LASEQSAAICEELANFDYLYLSGI 138
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase,
DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x
populus alba} PDB: 3n0g_A*
Length = 555
Score = 27.1 bits (59), Expect = 9.4
Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 28 LDLVKTRLQIQNLDRHGHQVSFIPF---------FRKTIKSE--GFLGMYRGSSVSYLFV 76
L T L + L +HG +VS F F + +K + L +Y S+L +
Sbjct: 106 TSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYE---ASFLAL 162
Query: 77 TPEKALYLASNDFFRHHLAGSSEEPLS 103
E L A F HL SEE +
Sbjct: 163 EGENILDEA-RVFAISHLKELSEEKIG 188
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.416
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,566,308
Number of extensions: 269893
Number of successful extensions: 370
Number of sequences better than 10.0: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 16
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.3 bits)