RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4813
         (302 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score =  108 bits (270), Expect = 2e-28
 Identities = 62/291 (21%), Positives = 117/291 (40%), Gaps = 17/291 (5%)

Query: 5   FSFLSKTINGGISSIIGISILYPLDLVKTRLQIQNLDR----HGHQVSFIPFFRKTIKSE 60
            SFL   + GG+++ I  + + P++ VK  LQ+Q+  +           I    +  K +
Sbjct: 4   LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQ 63

Query: 61  GFLGMYRGSSVSYLFVTPEKALYLASNDFFRHHLAGSSEEPLSVGRSVV----AGGLAAI 116
           GFL  +RG+  + +   P +AL  A  D ++    G  +      R       +GG A  
Sbjct: 64  GFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 123

Query: 117 CTLTLQTPMELVKIQM--QDASTKFTGKKPSAFAIFFDITKTKGIPGLYQGIFATGSRDL 174
            +L    P++  + ++           +          I K+ G+ GLYQG   +    +
Sbjct: 124 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGII 183

Query: 175 VFSCILFPLFAYMNERGPKVDDDSRGTRSYWFFISGSVSGSAAALLSTPFDVIKTRLQVK 234
           ++    F ++            D +       ++      + A L+S PFD ++ R+ ++
Sbjct: 184 IYRAAYFGVYDTAKGM----LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 239

Query: 235 SHENVG--HYSGVWDAGRRIYKTEGIRALFKGGLCRMMIMAPMFGILQMVY 283
           S        Y+G  D  R+I K EG +A FKG    ++        + ++Y
Sbjct: 240 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL-RGMGGAFVLVLY 289



 Score = 71.7 bits (174), Expect = 5e-15
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 8/193 (4%)

Query: 99  EEPLSVGRSVVAGGLAAICTLTLQTPMELVKIQMQ----DASTKFTGKKPSAFAIFFDIT 154
           ++ LS  +  +AGG+AA  + T   P+E VK+ +Q            +          I 
Sbjct: 1   DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 60

Query: 155 KTKGIPGLYQGIFATGSRDLVFSCILFPLFAYMNE--RGPKVDDDSRGTRSYWFFISGSV 212
           K +G    ++G  A   R      + F       +   G                 SG  
Sbjct: 61  KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 120

Query: 213 SGSAAALLSTPFDVIKTRL--QVKSHENVGHYSGVWDAGRRIYKTEGIRALFKGGLCRMM 270
           +G+ +     P D  +TRL   V        ++G+ +   +I+K++G+R L++G    + 
Sbjct: 121 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 180

Query: 271 IMAPMFGILQMVY 283
            +         VY
Sbjct: 181 GIIIYRAAYFGVY 193


>d2joza1 b.60.1.1 (A:2-127) Hypothetical protein YxeF {Bacillus
           subtilis [TaxId: 1423]}
          Length = 126

 Score = 25.5 bits (55), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 242 YSGVWDAGRRIYKTEGIRA 260
           Y G WD GR    T+G+++
Sbjct: 16  YYGTWDEGRAPGPTDGVKS 34


>d1vrma1 d.96.2.1 (A:44-352) Hypothetical protein TM1553 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 309

 Score = 26.1 bits (56), Expect = 5.9
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 197 DSRGTRSYWFFISGSVSGSAAAL---LSTPFDVI---KTRLQVKSHENVGHYSGVWDAGR 250
           D           S ++    A     LST   V+     R  V    N+G +  +   G 
Sbjct: 236 DPSTGYPARGVWSVTIIAEDATTADALSTAGFVMAGKDWRKVVLDFPNMGAHLLIVLEGG 295

Query: 251 RIYKTEGIRA 260
            I ++E  + 
Sbjct: 296 AIERSETFKL 305


>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
           niger [TaxId: 5061]}
          Length = 385

 Score = 25.2 bits (54), Expect = 10.0
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 241 HYSGVWDAGRRIYKTEGIRALFKG 264
              GV D   R+Y  +G+R +   
Sbjct: 329 EMGGVVDNAARVYGVQGLRVIDGS 352


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,088,422
Number of extensions: 47996
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)