BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4818
(734 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/714 (46%), Positives = 462/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG KI DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 5 YPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 64
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 65 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 124
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 125 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 184
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 185 FYNSYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 244
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL G I+G +I + ++ + N G
Sbjct: 245 YVLLSIR---EGCDPVNRLWYCDLQQESSG-IAGILKWVKLIDNFEGEYDYVTNEGTVFT 300
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +V+ I+ +P E WK L+PE E L+ +A V +N L++ Y+ +V++ +
Sbjct: 301 FKTNRHSPNYRVINIDFTDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHDVKNTL 360
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPLD+G I SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 361 QLHDLTTGALLKIFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 415
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 416 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 475
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH GI A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 476 NISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 535
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV AC NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 536 LIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 595
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 596 TDYGCSDSKQHFEWLVKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 655
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 656 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNVDWIP 709
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/711 (45%), Positives = 461/711 (64%), Gaps = 8/711 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S T + L Y DL +G I+G +I + ++ + N G KT
Sbjct: 246 YVLLSIREGTDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + LH
Sbjct: 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++ +P
Sbjct: 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYCFTSFLSPGIIYHCDLT-----KEELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + +++
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 660 VGRSRKQNNPLLIHVDTKAGHGAGMPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/714 (45%), Positives = 462/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVXDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQXPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSXMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGXDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGXSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/714 (45%), Positives = 462/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGFGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/714 (45%), Positives = 462/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/714 (45%), Positives = 463/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI VEFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCVEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DH+DRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHNDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/714 (45%), Positives = 461/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 CDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/714 (45%), Positives = 462/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GG+NGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGANGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/714 (45%), Positives = 461/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DH DRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHADRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/714 (45%), Positives = 461/714 (64%), Gaps = 14/714 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD----LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELI 318
Y+L+S +G D L Y DL +G I+G +I + ++ + N G
Sbjct: 246 YVLLSIR---EGCDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFT 301
Query: 319 VKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVM 378
KT +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ +
Sbjct: 302 FKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361
Query: 379 DLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDD 438
LHDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++
Sbjct: 362 QLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEE 416
Query: 439 FKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXX 498
+P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGF 476
Query: 499 XVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEY 558
+S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
+I + YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI +
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT 596
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+++G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATL
Sbjct: 597 TDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATL 656
Query: 678 QEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
Q +G Q NPLL+ V+ AG G G P K IEE++D++ F+ + L + + P
Sbjct: 657 QYIVGRSRKQNNPLLIHVDTKAGAGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/711 (45%), Positives = 459/711 (64%), Gaps = 8/711 (1%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R KE
Sbjct: 6 YPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKE 65
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
++ + + KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 66 RMTELYDCPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTV 125
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGM 185
Query: 203 FYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGR 262
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D GR
Sbjct: 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR 245
Query: 263 YLLVSTSNNTQGSD-LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
Y+L+S T + L Y DL +G I+G +I + ++ + N G KT
Sbjct: 246 YVLLSIREGTDPVNRLWYCDLQQESNG-ITGILKWVKLIDNFEGEYDYVTNEGTVFTFKT 304
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + LH
Sbjct: 305 NRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364
Query: 382 DLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKP 441
DL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++ +P
Sbjct: 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLT-----KEELEP 419
Query: 442 TIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVS 501
+FRE + + +QT Q+++ SKDGT++PM+I+H+ G + +P + +S
Sbjct: 420 RVFREVTCKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNIS 479
Query: 502 VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMIN 561
+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 562 KKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEF 621
+ YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + +++
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDY 599
Query: 622 GSPNNKTHFHNLLSYSPLHNIKVP-PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
G ++K HF L+ YSPLHN+K+P ++ QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 600 GCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYI 659
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 660 VGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 470 bits (1210), Expect = e-132, Method: Compositional matrix adjust.
Identities = 277/716 (38%), Positives = 400/716 (55%), Gaps = 38/716 (5%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y R AIKE
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKE 70
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L NY K AP R+ +++F N GLQN ++L+ Q+ EVFLDPN LS DGTT
Sbjct: 71 KLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTT 129
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL +FS +G+ AY LS +GSDW +H+ DV++ + LK+VKF ISW ++GF
Sbjct: 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGF 188
Query: 203 FYNQYCDINGTADGTETTAHMGQ-KIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDC 260
FY+ Y DG+E +A Q K+Y+H LGT Q+ D V P + + VT+
Sbjct: 189 FYSSYD----KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED 244
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
R+LL+S +N+T G+ L+ DL PL TV +D ++ N G L +
Sbjct: 245 DRFLLISAANSTSGNRLYVKDLSQE-------NAPLLTVQGDLDADVSLVDNKGSTLYLL 297
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T ++AP ++VT++ NP +W+ LIPE R + + L Y+ + + ++
Sbjct: 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVLTVHSGSGYLFAEYMVDATARVEQ 354
Query: 381 HDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDF 439
D GKR+ L LG ++ +G+ +++GF ++ QP T+Y
Sbjct: 355 FDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI----- 408
Query: 440 KPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXX 499
+++R + P F+P + ++Q +++SKDGTRVP+ I +R G + NP I+
Sbjct: 409 --SLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFD 465
Query: 500 VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYM 559
VS+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG KQN FDDF AAAEY+
Sbjct: 466 VSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYL 524
Query: 560 INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSES 619
+ YT+ + I GGSNGGLLVGA + QRP+L AL VG LDMLR++ FT
Sbjct: 525 KAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAY 584
Query: 620 EFG-SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
++G S +++ F L YSPLHN++ YP+T+V T DH+DRV P HS+KF ATLQ
Sbjct: 585 DYGTSADSEAMFDYLKGYSPLHNVR---PGVSYPSTMVTTADHNDRVVPAHSFKFAATLQ 641
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
+P L+R+E +AGHG GTP+ K IE+ DIY F + +G + P P
Sbjct: 642 ADNAG----PHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRELPRQP 693
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 277/716 (38%), Positives = 395/716 (55%), Gaps = 38/716 (5%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y R AIKE
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKE 70
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L NY K AP R+ +++F N GLQN ++L+ Q+ EVFLDPN LS DGTT
Sbjct: 71 KLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTT 129
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL +FS +G+ AY LS +GSDW +H+ DV++ + LK+VKF ISW ++GF
Sbjct: 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFSGISWL-GNEGF 188
Query: 203 FYNQYCDINGTADGTETTAHMGQ-KIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDC 260
FY+ Y DG+E +A Q K+Y+H LGT Q+ D V P + + VT+
Sbjct: 189 FYSSYD----KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED 244
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
R+LL+S +N+T G+ L+ DL PL TV +D ++ N G L +
Sbjct: 245 DRFLLISAANSTSGNRLYVKDLSQE-------NAPLLTVQGDLDADVSLVDNKGSTLYLL 297
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T ++AP ++VT++ NP +W+ LIPE R + + L Y + + ++
Sbjct: 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVLTVHSGSGYLFAEYXVDATARVEQ 354
Query: 381 HDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDF 439
D GKR+ L LG ++ +G+ +++GF ++ QP T+Y
Sbjct: 355 FDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI----- 408
Query: 440 KPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXX 499
+++R + P F+P + ++Q +++SKDGTRVP+ I +R G + NP I+
Sbjct: 409 --SLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFD 465
Query: 500 VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYM 559
VS+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG KQN FDDF AAAEY+
Sbjct: 466 VSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYL 524
Query: 560 INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSES 619
+ YT+ + I GGSNGGLLVGA QRP+L AL VG LD LR++ FT
Sbjct: 525 KAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAY 584
Query: 620 EFG-SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
++G S +++ F L YSPLHN++ YP+T V T DHDDRV P HS+KF ATLQ
Sbjct: 585 DYGTSADSEAXFDYLKGYSPLHNVR---PGVSYPSTXVTTADHDDRVVPAHSFKFAATLQ 641
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
+P L+R+E +AGHG GTP+ K IE+ DIY F + G + P P
Sbjct: 642 ADNAG----PHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEXGYRELPRQP 693
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 277/716 (38%), Positives = 395/716 (55%), Gaps = 38/716 (5%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y R AIKE
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKE 70
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L NY K AP R+ +++F N GLQN ++L+ Q+ EVFLDPN LS DGTT
Sbjct: 71 KLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTT 129
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL +FS +G+ AY LS +GSDW +H+ DV++ + LK+VKF ISW ++GF
Sbjct: 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLXDVESKQPLETPLKDVKFSGISWL-GNEGF 188
Query: 203 FYNQYCDINGTADGTETTAHMGQ-KIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDC 260
FY+ Y DG+E +A Q K+Y+H LGT Q+ D V P + + VT+
Sbjct: 189 FYSSYD----KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED 244
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
R+LL+S +N+T G+ L+ DL PL TV +D ++ N G L +
Sbjct: 245 DRFLLISAANSTSGNRLYVKDLSQE-------NAPLLTVQGDLDADVSLVDNKGSTLYLL 297
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T ++AP ++VT++ NP +W+ LIPE R + + L Y + + ++
Sbjct: 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVLTVHSGSGYLFAEYXVDATARVEQ 354
Query: 381 HDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDF 439
D GKR+ L LG ++ +G+ +++GF ++ QP T+Y
Sbjct: 355 FDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI----- 408
Query: 440 KPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXX 499
+++R + P F+P + ++Q +++SKDGTRVP+ I +R G + NP I+
Sbjct: 409 --SLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFD 465
Query: 500 VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYM 559
VS+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG KQN FDDF AAAEY+
Sbjct: 466 VSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYL 524
Query: 560 INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSES 619
+ YT+ + I GGSNGGLLVGA QRP+L AL VG LD LR++ FT
Sbjct: 525 KAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLXRVALPAVGVLDXLRYHTFTAGTGWAY 584
Query: 620 EFG-SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
++G S +++ F L YSPLHN++ YP+T V T DHDDRV P HS+KF ATLQ
Sbjct: 585 DYGTSADSEAXFDYLKGYSPLHNVR---PGVSYPSTXVTTADHDDRVVPAHSFKFAATLQ 641
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
+P L+R+E +AGHG GTP+ K IE+ DIY F + G + P P
Sbjct: 642 ADNAG----PHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEXGYRELPRQP 693
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 277/716 (38%), Positives = 397/716 (55%), Gaps = 38/716 (5%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y R AIKE
Sbjct: 12 YPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKE 70
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+L NY K AP +++F N GLQN ++L+ Q+ EVFLDPN LS DGTT
Sbjct: 71 KLAASWNYAKEGAPFWWGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGTT 129
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGF 202
AL +FS +G+ AY LS +GSDW +H+ DV++ + LK+VKF ISW ++GF
Sbjct: 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGF 188
Query: 203 FYNQYCDINGTADGTETTAHMGQ-KIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDC 260
FY+ Y DG+E +A Q K+Y+H LGT Q+ D V P + + VT+
Sbjct: 189 FYSSYD----KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED 244
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
R+LL+S +N+T G+ L+ DL PL TV +D ++ N G L +
Sbjct: 245 QRFLLISAANSTSGNRLYVKDLSQ-------ENAPLLTVQGDLDADVSLVDNKGSTLYLL 297
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T ++AP ++VT++ NP +W+ LIPE R + + L Y+ + + ++
Sbjct: 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPE---RQQVLTVHSGSGYLFAEYMVDATARVEQ 354
Query: 381 HDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDF 439
D GKR+ L LG ++ +G +++GF ++ QP T+Y
Sbjct: 355 FDYE-GKRVREVALPGLGSVSGFNGYWWDPALYFGFENYAQPPTLYRFEPKSGAI----- 408
Query: 440 KPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXX 499
+++R + P F+P + ++Q +++SKDGTRVP+ I +R G + NP I+
Sbjct: 409 --SLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFD 465
Query: 500 VSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYM 559
VS+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG KQN FDDF AAAEY+
Sbjct: 466 VSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYL 524
Query: 560 INKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSES 619
+ YT+ + I GGSNGGLLVGA + QRP+L AL VG LDMLR++ FT
Sbjct: 525 KAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAY 584
Query: 620 EFG-SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
++G S +++ F L YSPLHN++ YP+T+V T DHDDRV P HS+KF ATLQ
Sbjct: 585 DYGTSADSEAMFDYLKGYSPLHNVR---PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQ 641
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
+P L+R+E +AGHG GTP+ K IE+ DIY F + +G + P P
Sbjct: 642 ADNAG----PHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRELPRQP 693
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 414 bits (1064), Expect = e-116, Method: Compositional matrix adjust.
Identities = 243/710 (34%), Positives = 381/710 (53%), Gaps = 38/710 (5%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R ++ V D HG+++ DPYRWLE E Q + QN + REA+
Sbjct: 3 YPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAA 61
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+ + + S P R+ +FY + +ILY ++ +G +V LDPN SKDGT
Sbjct: 62 RFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTV 121
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK-DYPEVLKNVKFPSISWTHDHKG 201
+L +A S +GK A+ + +D LH+ DVD+G+ +V++ K+ + WT D KG
Sbjct: 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKG 181
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG 261
F+Y ++ + + E + I YH LGTE KD V E + L S+++ G
Sbjct: 182 FYY-EWLPTDPSIKVDERPGYT--TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG 238
Query: 262 RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
+YL V +D+++ K G+ + ++ G+ +E+ A V T
Sbjct: 239 KYLFVYILRGWSENDVYW---------KRPGEKDFRLLVKGVGAKYEVHAWKD-RFYVLT 288
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+ AP+ +V ++ P +WK ++PED + +L V+ V + L + Y+++ S + +
Sbjct: 289 DEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGH-LSLEYLKDATSEVRVA 347
Query: 382 DLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
L GK + + L +G +++ G ++ +Y FTSF P IY ++ K
Sbjct: 348 TLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG-------K 399
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXV 500
++ + VP P +Q +QV++ SKDGT+VPM+++HR R+ P ++ V
Sbjct: 400 SELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNV 458
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
++ F S +L G+YA+ N+RGGGE G+ WH+AGRL KKQN FDDF AAAEY++
Sbjct: 459 NMEANFRSSILPWL-DAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLV 517
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+KYT+PK + I GGSNGGLLVGA + QRPELYGA + V LDM+R++ F E
Sbjct: 518 QQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPE 577
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+G+ F L +YSP H+++ + +YPA L++ DHDDRV P+H+ KF+A +Q
Sbjct: 578 YGTAEKPEDFKTLHAYSPYHHVR---PDVRYPALLMMAADHDDRVDPMHARKFVAAVQNS 634
Query: 681 IGSLPYQKNP--LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLK 728
G NP LLR+E +AGHG + K+IE D+Y FL + L ++
Sbjct: 635 PG------NPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQ 678
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 248/718 (34%), Positives = 379/718 (52%), Gaps = 41/718 (5%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQ--NNISNPYCQNHTDREA 79
PYP + VED + G K+ DP+RWLE + ++ ++Q + + Y + +R A
Sbjct: 39 PYPASPQVPLVEDHF-GEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAA 97
Query: 80 IKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQ---RNLTGSTEVFLDPNKL 136
+++++ + +YE++ PQR+ + FY N GL N S L V+ + V LDPN
Sbjct: 98 LEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTW 157
Query: 137 SKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWT 196
+KDG TAL +A SD+G+ AY + GSDW T+ V GK + LK VKF ++W
Sbjct: 158 AKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWL 217
Query: 197 HDHKGFFYNQYCDINGTADGTETTA-HMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS 255
+ Y+++ + +G A + Q ++ H LGT Q D PV P G +
Sbjct: 218 G-NDALLYSRFAEPK---EGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273
Query: 256 EVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGP 315
V+ GR++++++S T ++ + + +GKI P+ +IP + + + G
Sbjct: 274 SVSSDGRWVVITSSEGTD--PVNTVHVARVTNGKIG---PVTALIPDLKAQWDFVDGVGD 328
Query: 316 ELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375
+L + AP K+V ++L+ + + T++PE ++ V +A N+L YI + +
Sbjct: 329 QLWFVSGDGAPLKKIVRVDLSGSTPR-FDTVVPESKDNLESV--GIAGNRLFASYIHDAK 385
Query: 376 SVMDLHDLNTGKRLHSFPL-DLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENIT 434
S + DL+ GK + L +G + +SGR + F+SF QP T+
Sbjct: 386 SQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLAL------- 437
Query: 435 DQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIXX 494
D K T + E + F+P F+ +QV++ SKDGT+VPM+I+ R A P ++
Sbjct: 438 DPATAKTTPW-EPVHLTFDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYG 494
Query: 495 XXXXXVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA 554
V++ P FS ++ G +A+ N+RGGGE G+ WH+AGR KKQN FDDF A
Sbjct: 495 YGGFNVALTPWFSAGFMTWIDS-GGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIA 553
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
A E++I T + I GGSNGGLL+GA NQRP+L+ AA VG +DMLRF++FT
Sbjct: 554 AGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAG 613
Query: 615 YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674
Y ++G P + + L YSP HN++ + YPA LV T D DDRV P HS+K+
Sbjct: 614 RYWVDDYGYPEKEADWRVLRRYSPYHNVR---SGVDYPAILVTTADTDDRVVPGHSFKYT 670
Query: 675 ATLQ-EKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
A LQ IG P+ L+R+E AGHG G P+ K IEE D+ FL GL P
Sbjct: 671 AALQTAAIGPKPH-----LIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTPRP 723
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 135/263 (51%), Gaps = 9/263 (3%)
Query: 466 SKDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPN 525
S DG ++P +++++ G + +NP ++ V P FS + G+ + N
Sbjct: 456 SFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVINAPYFSRIKNEVWVKNAGVSVLAN 515
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
IRGGGE G +WH + + +K+Q F+DF A +E +I + T P+Y+ I GGSNGGLLV
Sbjct: 516 IRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLLVSVA 575
Query: 586 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 645
+ QRPEL+GA V LDM+R+ +F + +E+G P ++ Y+PL N+ +
Sbjct: 576 MTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSL- 634
Query: 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGT 705
+YP L+ D RV P H F L + + Y +D+GHG G+
Sbjct: 635 --TQKYPTVLITDSVLDQRVHPWHGRIFEYVLAQNPNTKTY------FLESKDSGHGSGS 686
Query: 706 PLMKSIEEMTDIYVFLMKSLGLK 728
L +S ++Y F +L LK
Sbjct: 687 DLKESANYFINLYTFFANALKLK 709
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 147/623 (23%), Positives = 268/623 (43%), Gaps = 57/623 (9%)
Query: 124 TGSTEVFLDPNKLS--KDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDV-DTGKD 180
+ EV +D N+++ K +++ A+ + SG++ T+ K + D +
Sbjct: 155 VAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT 214
Query: 181 YPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDI 240
+ + I W DH FY T+ K++ HV+G Q +D+
Sbjct: 215 IADKVSGTN-GEIVWGPDHTSLFYV-----------TKDETLRENKVWRHVMGKLQSEDV 262
Query: 241 PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVI 300
+ E N + D + S S T +++H DL K + L+ V
Sbjct: 263 CLYEEHNPLFSAFMYKAADTNTLCIGSQSPET--AEVHLLDLR-----KGNAHNTLEIVR 315
Query: 301 PGMDH-HHEIIANNGPELIVKTTKN-APKGKVVTINLNNPCEKNWKTLIPEDENRTLDVV 358
P +++ + L++ T + A K++ P +W ++ +
Sbjct: 316 PREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMES 373
Query: 359 AAVANNKLIVHY----IQNVRSVM-DLHD--LNTGKRLHSFPLDLGQIT-HI--SGRRKY 408
AV +N L+V + + ++M D D G L ++ T H+ S +Y
Sbjct: 374 IAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEY 433
Query: 409 NEVFY--GFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRS 466
E + ++S P T + +++ QD + + + F+ ++ ++ + +
Sbjct: 434 EEPTFRMEYSSLATPNTWF------DVSPQDHSRTAVKVREVGGGFDAANYKVERRFATA 487
Query: 467 KDGTRVPMYIIHRVGALRNRRNPVIIXXXXXXXVSVLPTFSISRCMFLRHFNGIYAIPNI 526
D T++P+ +++ ++ P ++ +S+ P FSI + I+AI +I
Sbjct: 488 PDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR-GMIFAIAHI 546
Query: 527 RGGGELGEDWHNAG-RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
RGG ELG W+ G + L K+N F DF AAAE+++N K T P + G S GGLL+GA
Sbjct: 547 RGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAV 606
Query: 586 LNQRPELYGAALILVGALDMLRFN---KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 642
LN RP+L+ AL V +D++ + E+G+PN ++ +LSYSP+ N+
Sbjct: 607 LNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNV 666
Query: 643 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
+ +YP +V G HD RV K+++ L+E N +LL ++ ++GH
Sbjct: 667 RA----QEYPNIMVQCGLHDPRVAYWEPAKWVSKLRE----CKTDNNEILLNIDMESGHF 718
Query: 703 QGTPLMKSIEEMTDIYVFLMKSL 725
K +E F+ K L
Sbjct: 719 SAKDRYKFWKESAIQQAFVCKHL 741
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 427 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 485
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 282 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 339
Query: 486 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 543
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 340 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 391
Query: 544 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 392 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 449
Query: 601 GALDMLRFNKFTIAYY 616
+D + + A +
Sbjct: 450 SVVDWEEMYELSDAAF 465
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 13/148 (8%)
Query: 6 GPHPSEERAEKVEFTGPYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNN 65
GP A K+E T K E+ D DP R+ Y C + +F++ +
Sbjct: 1 GPGSMARDATKLEATVAKLKKHWAESAPRDMRAAFSADPGRFGRYSLCLDDLLFDWSK-- 58
Query: 66 ISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTG 125
C+ + + A+ ++L A+ E R+ + H ++ ++L+V T
Sbjct: 59 -----CRVNDETMALLKELAVAADVEG-----RRAAMFAGEHINNTEDRAVLHVALRDTS 108
Query: 126 STEVFLDPNKLSKDGTTAL-KLYAFSDN 152
S EV +D + + D L ++ AF+D
Sbjct: 109 SKEVLVDGHNVLPDVKHVLDRMAAFADG 136
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 427 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 485
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 486 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 543
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVAGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 544 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 601 GALD 604
+D
Sbjct: 470 SVVD 473
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 427 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 485
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 486 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 543
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 544 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 601 GALD 604
+D
Sbjct: 470 SVVD 473
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 427 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 485
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 486 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 543
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 544 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 601 GALDMLRFNKFTIAYY 616
+D + + A +
Sbjct: 470 SVVDWEEMYELSDAAF 485
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 18/184 (9%)
Query: 427 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 485
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 486 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 543
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 544 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
C +D AAA + Y IMG S GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYSYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 601 GALD 604
+D
Sbjct: 470 SVVD 473
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 18/196 (9%)
Query: 427 CNIPENITDQDDFKPTIFRETIVPE-FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRN 485
+ P I +P + E +PE ++ ++ V+ S DG+RVP Y++ A
Sbjct: 302 LSTPPRIVSLPSGEPLL--EGGLPEDLRRSIAGSRLVWVESFDGSRVPTYVLESGRAPTP 359
Query: 486 RRNPVIIXXXXXXXVS-VLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRL-L 543
V++ S TF+ S H +PN RG GE+W RL +
Sbjct: 360 GPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV----VMPNYRGSTGYGEEW----RLKI 411
Query: 544 KKQNC---FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
C +D AAA + Y IMG + GG + L +P L+ A +
Sbjct: 412 IGDPCGGELEDVSAAARWARESGLASELY--IMGYAYGGYMTLCALTMKPGLFKAGVAGA 469
Query: 601 GALDMLRFNKFTIAYY 616
+D + + A +
Sbjct: 470 SVVDWEEMYELSDAAF 485
>pdb|2E6K|A Chain A, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|B Chain B, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|C Chain C, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
pdb|2E6K|D Chain D, X-Ray Structure Of Thermus Thermopilus Hb8 Tt0505
Length = 651
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 15/79 (18%)
Query: 129 VFLDPNKLSKDGTTALKLYAFSDN--GKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
VF D N++S DG T L AF+++ ++ AY W TL ++DV+ + + +K
Sbjct: 184 VFWDDNRISIDGPTDL---AFTEDVLARYRAYG-------WQTLRVEDVNDLEALRKAIK 233
Query: 187 NVKF---PSISWTHDHKGF 202
K P++ H GF
Sbjct: 234 LAKLDERPTLIAVRSHIGF 252
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 277 LHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLN 336
L +++ PD KI + P VI G +++ EL +K KN G V T N N
Sbjct: 56 LKLGNINPKPDIKIVKESPATAVIDGDLGLGQVVGKKAXELAIKKAKNVGVGVVATRNAN 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,849,152
Number of Sequences: 62578
Number of extensions: 1141725
Number of successful extensions: 2549
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2415
Number of HSP's gapped (non-prelim): 36
length of query: 734
length of database: 14,973,337
effective HSP length: 106
effective length of query: 628
effective length of database: 8,340,069
effective search space: 5237563332
effective search space used: 5237563332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)