RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4818
(734 letters)
>gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A
[Amino acid transport and metabolism].
Length = 648
Score = 431 bits (1111), Expect = e-142
Identities = 227/695 (32%), Positives = 341/695 (49%), Gaps = 61/695 (8%)
Query: 43 DPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENN 102
DPYRWLE AE + QN + + + R A ++LL + +YE P +
Sbjct: 4 DPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGR 63
Query: 103 YFYFHN-----KGLQNHSILYVQRNLTGSTEVFLDPNKLSKDG--TTALKLYAFSDNGKH 155
Y+ F +GL + L R+ EV +D + LS D AL + +G
Sbjct: 64 YYNFWQDALYPRGLYRRTTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTR 123
Query: 156 FAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTAD 215
Y LS GSD D++TG+ E + KFP ISW D G F ++Y
Sbjct: 124 LLYSLSIGGSDAGITREFDLETGEFVEE--EGFKFPGISWL-DDDGVFVSRY-----WRP 175
Query: 216 GTETTAHMG---QKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT 272
+T + +++ L Q+ D+ V + G +++ G + ++S T
Sbjct: 176 KEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGT 235
Query: 273 QGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVT 332
G L L PD K+ ++ ++ + + L + T ++ GKV+
Sbjct: 236 SGKGLIKLGL---PD-KVGYEW--GKLVNTLRADWTFADVDYGLLYLLTDEDLELGKVIA 289
Query: 333 INLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSF 392
IPE E ++L+ V +KL+ + NV ++++DL G+R+
Sbjct: 290 E------------FIPE-EEQSLEQVVTT-KDKLVAGTLDNVSGRLEVYDLK-GERIEEV 334
Query: 393 PLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPE 451
L G + S + +EVF FTSF P T+Y D + + RE V +
Sbjct: 335 ELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYR-------LDLFGGELEVIREQPV-Q 386
Query: 452 FEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRC 511
F+ ++ +Q + SKDGTR+P +I+ + GA ++ NP ++Y YGG+ +S+ P FS SR
Sbjct: 387 FDADNYEVEQFFATSKDGTRIPYFIVRK-GAKKDE-NPTLLYAYGGFNISLTPRFSGSRK 444
Query: 512 MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYIT 571
++L G++ + NIRGGGE G +WH AG KQN FDDF A AE +I + T P+ +
Sbjct: 445 LWLER-GGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLG 503
Query: 572 IMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFH 631
I GGSNGGLLVGA L QRPEL+GAA+ V LDMLR++ T +E+G+P++
Sbjct: 504 IQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWIAEYGNPDDPEDRA 563
Query: 632 NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPL 691
LL+YSP HN+K +YP TL+ T HDDRV P H+ KF A LQE P+
Sbjct: 564 FLLAYSPYHNLK---PGQKYPPTLITTSLHDDRVHPAHARKFAAKLQE-------VGAPV 613
Query: 692 LLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726
LLR E GHG P + E+ D+ FL+++LG
Sbjct: 614 LLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648
>gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal
beta-propeller domain. This unusual 7-stranded
beta-propeller domain protects the catalytic triad of
prolyl oligopeptidase (see pfam00326), excluding larger
peptides and proteins from proteolysis in the cytosol.
Length = 412
Score = 351 bits (902), Expect = e-114
Identities = 156/413 (37%), Positives = 231/413 (55%), Gaps = 21/413 (5%)
Query: 24 PKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPY-CQNHTDREAIKE 82
P R+DETV D+YHG + DPYRWLE E + +N + + Q RE IKE
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDFLAQLKPLREKIKE 60
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTG---STEVFLDPNKLSKD 139
+L + NY+ SAP R+ Y+YF N G +N S+LY + G + EVFLDPN LS+D
Sbjct: 61 ELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDAGEGPGETEEVFLDPNTLSED 120
Query: 140 G--TTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTH 197
G T AL YAFS +G+ AY LS SGSDW T+ +DV+TG+ P+VL+ VKF I W
Sbjct: 121 GDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKFSGIVWAP 180
Query: 198 DHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEV 257
D+KGFFY++Y + + ++ QK++ H LGT Q +D+ V E P+ L +E
Sbjct: 181 DNKGFFYSRY------DEPERGSTNLNQKVWRHRLGTPQSQDVLVFEEPDEPFWYLGAER 234
Query: 258 TDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPEL 317
+D G+YL +S+++ T ++L+ DL D PL+ V+P D + + + G
Sbjct: 235 SDDGKYLFISSASGTDVNELYVLDLAQEKD------GPLRKVVPRFDGVYYYVEHEGDTF 288
Query: 318 IVKTTKNAPKGKVVTINLNNPCEKNWKTLIPE-DENRTLDVVAAVANNKLIVHYIQNVRS 376
T AP ++V ++LN+P +WK +I E E+ L+ + V N L++ Y ++ S
Sbjct: 289 YFLTNDGAPNFRLVRVDLNDPSPADWKDVIVEHREDVLLEEI-TVFGNYLVLSYRRDALS 347
Query: 377 VMDLHDLNTGKRL-HSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCN 428
+ + DL G L F +G ++ SG +E+ Y F+SFL PGTIY +
Sbjct: 348 RLQVFDLGGGGVLFEEFLPGVGSVSSASGEYDDDELRYSFSSFLTPGTIYDLD 400
>gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism].
Length = 682
Score = 333 bits (857), Expect = e-104
Identities = 197/726 (27%), Positives = 342/726 (47%), Gaps = 66/726 (9%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHT-DREAI 80
P P + K +HG D Y WL + + ++ +++ N Y + + +
Sbjct: 4 PLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAE--NAYTEAVMAHLQPL 61
Query: 81 KEQLLRMANY---EKYSAPQRQENNYFYFH--NKGLQNHSILYVQRNLTGSTE-VFLDPN 134
++++ E + ++ Y Y+ +G + + I Q + G E V LD N
Sbjct: 62 QKKIFEEIKGRIKEDDLSVPYRKGPYEYYSRTEEGKE-YPIYCRQPDEGGEGEEVLLDVN 120
Query: 135 KLSKDGT-TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSI 193
K ++ +L + S + AY + G + TL KD+ TG++ P+ + N S
Sbjct: 121 KEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNT-SGSF 179
Query: 194 SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGL 253
+W D K FY H K++ H LGT D V E + R L
Sbjct: 180 AWAADGKTLFY-----------TRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFF-L 227
Query: 254 HSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANN 313
+ Y+++S + S++ D P+ + K V+P + + +
Sbjct: 228 SVGRSRSEAYIVIS-LGSHITSEVRLLDA-DDPEAE------PKVVLPRENGVEYSVEHG 279
Query: 314 GPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQN 373
G + + + K+V ++ + NW+ LIP E+ L+ V A++ L++ Q
Sbjct: 280 GDRFYILSNADGKNFKLVRAPVS-ADKSNWRELIPHREDVRLEGVDLFADH-LVLLERQE 337
Query: 374 VRSVMDLHDLNTGK-RLHSFPLDLGQITHISGRRKYNE--VFYGFTSFLQPGTIYHCNIP 430
+ + D TG+ R +F D +SG +++ + Y ++S P T++ ++
Sbjct: 338 GLPRVVVRDRKTGEERGIAFD-DEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMA 396
Query: 431 ENITDQDDFKPTIFRETIVP-EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNP 489
+ T+ ++ VP F+P + +++++ + DG +VP+ +++R + P
Sbjct: 397 TG-------ERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTKLDGSAP 449
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFL-RHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNC 548
+++YGYG YG+S+ P+FSI+R L R F +YAI ++RGGGELG W+ G+LL K+N
Sbjct: 450 LLLYGYGAYGISMDPSFSIARLSLLDRGF--VYAIAHVRGGGELGRAWYEDGKLLNKKNT 507
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD---- 604
F DF AAA +++ + YT P I +GGS GG+L+GA N P+L+ + V +D
Sbjct: 508 FTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTT 567
Query: 605 MLRFN-KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDD 663
ML + T+ + E+G+P + ++ + SYSP N++ P YPA LV TG +D
Sbjct: 568 MLDPSLPLTVTEW--DEWGNPLDPEYYDYIKSYSPYDNVEAQP----YPAILVTTGLNDP 621
Query: 664 RVPPLHSYKFIATLQE-KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLM 722
RV K++A L+E K NPLLL+ DAGHG + + +EE+ Y FL+
Sbjct: 622 RVQYWEPAKWVAKLRELKTDG-----NPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLL 676
Query: 723 KSLGLK 728
K G
Sbjct: 677 KLAGTD 682
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 207 bits (529), Expect = 2e-62
Identities = 88/216 (40%), Positives = 115/216 (53%), Gaps = 16/216 (7%)
Query: 513 FLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITI 572
L + A+ N RG G G WH+AG+ QN FDDF AAAEY+I + Y P + I
Sbjct: 9 LLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYVDPDRLAI 68
Query: 573 MGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE-SEFGSP-NNKTHF 630
GGS GG L GA LNQRP+L+ AA+ +V +D L + T + E+G+P +N+ +
Sbjct: 69 WGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWGNPWDNEEGY 128
Query: 631 HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690
L YSP N+K YP L++ G HDDRVPP + K +A LQ K
Sbjct: 129 RYLSPYSPYDNVK------AYPPLLLIHGLHDDRVPPAEALKLVAALQAK-------GKN 175
Query: 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLG 726
+LL + D GHG G P K EE FL+K LG
Sbjct: 176 VLLLIFPDEGHGGGKPRNK-REEYARELAFLLKVLG 210
>gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional.
Length = 686
Score = 197 bits (501), Expect = 8e-54
Identities = 156/567 (27%), Positives = 267/567 (47%), Gaps = 62/567 (10%)
Query: 170 LHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYY 229
+ ++++TG YPE+L NV+ PS W +D F+Y + + +++
Sbjct: 155 IRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVR----------KHPVTLLPYQVWR 203
Query: 230 HVLGTEQDKDIPVVEFPNGR-SLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDG 288
H +GT +D V E + + LH T Y+++ ++ T L L D
Sbjct: 204 HTIGTPASQDELVYEEKDDTFYVSLHK--TTSKHYVVIHLASATTSEVL-------LLDA 254
Query: 289 KISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIP 348
+++ P +P H + + +++ ++ + + + E+ W+ LIP
Sbjct: 255 ELADAEPF-VFLPRRKDHEYSLDHYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIP 311
Query: 349 EDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLH---SFPLDLGQITHISGR 405
EN L+ + L+V Q R + L +N R +F D +T I+
Sbjct: 312 PRENIMLEGFTLFTD-WLVVEERQ--RGLTSLRQINRKTREVIGIAFD-DPAYVTWIA-- 365
Query: 406 RKYN------EVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLFQT 459
YN + YG++S P T++ D D + + ++T VP F+ +++
Sbjct: 366 --YNPEPETSRLRYGYSSMTTPDTLFE-------LDMDTGERRVLKQTEVPGFDAANYRS 416
Query: 460 KQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RHFN 518
+ ++ ++DG VP+ +++ R NP+++YGYG YG S+ FS SR L R F
Sbjct: 417 EHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGF- 475
Query: 519 GIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 578
+YAI ++RGGGELG+ W+ G+ LKK+N F+D+ A + ++ Y P MGGS G
Sbjct: 476 -VYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAG 534
Query: 579 GLLVGACLNQRPELYGAALILVGALDMLRF---NKFTIAYYSESEFGSPNNKTHFHNLLS 635
G+L+G +NQRPEL+ + V +D++ + E+G+P + ++ + S
Sbjct: 535 GMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKS 594
Query: 636 YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695
YSP N+ YP LV TG HD +V K++A L+E L + LLL
Sbjct: 595 YSPYDNVTA----QAYPHLLVTTGLHDSQVQYWEPAKWVAKLRE----LKTDDHLLLLCT 646
Query: 696 EQDAGHGQGTPLMKSIEEMTDIYVFLM 722
+ D+GHG + KS E + Y FL+
Sbjct: 647 DMDSGHGGKSGRFKSYEGVAMEYAFLI 673
>gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
[Amino acid transport and metabolism].
Length = 620
Score = 102 bits (256), Expect = 1e-22
Identities = 80/438 (18%), Positives = 151/438 (34%), Gaps = 65/438 (14%)
Query: 280 FDLHSLPDGKIS-GKFPLKTVIPGMDHHHEIIANNGPELIVKTTKN--------APKGKV 330
+ DG++ P + + + +I NG + T GK
Sbjct: 171 VSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESL-TPGEGSISKLAFDADGKS 229
Query: 331 VTINLNNPCEKNW----KTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTG 386
+ + L ++ L+ + E +D + ++ ++ L + T
Sbjct: 230 IAL-LGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATD 288
Query: 387 KRLHSFPLDLGQITHISGRRKYNEVFYGFTSFL--------------QPGTIYHCNIPEN 432
S + + G + G F +P IY
Sbjct: 289 GGGSSPLFRVDDLGG--GVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYL------ 340
Query: 433 ITDQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVII 492
++ K T + + + L + + V ++S DG + ++ G ++ P+I+
Sbjct: 341 YDRGEEAKLTSSNNSGLKKV--KLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIV 398
Query: 493 YGYGG----YGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNC 548
Y +GG G S P + + + + PN RG G ++ +A R
Sbjct: 399 YIHGGPSAQVGYSFNPEIQV---LASAGYAVLA--PNYRGSTGYGREFADAIRGDWGGVD 453
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608
+D AA + ++ P+ I I GGS GG + + P A + G +L F
Sbjct: 454 LEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVDWLLYF 513
Query: 609 NKFTIAY---YSESEFGSPNNKTHFHNLLSYSPL---HNIKVPPNNTQYPATLVLTGDHD 662
+ T E+ G P ++ + SP+ NIK P L++ G+ D
Sbjct: 514 GESTEGLRFDPEENGGGPPEDREKY---EDRSPIFYADNIKTP--------LLLIHGEED 562
Query: 663 DRVPPLHSYKFIATLQEK 680
DRVP + + + L+ K
Sbjct: 563 DRVPIEQAEQLVDALKRK 580
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 37.0 bits (86), Expect = 0.013
Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 19/128 (14%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 609
D A + + + ++G S GG + A +RPE A L+L+ LR
Sbjct: 53 ADLAALLDALGLGP------VVLVGHSLGGAVALAAAARRPERV-AGLVLISP--PLRDL 103
Query: 610 KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669
+ +A + + +L L + VP LV+ G+ D VPP
Sbjct: 104 EELLAADAAALLALLRAALLDADLREA--LARLTVP--------VLVIHGEDDPLVPPEA 153
Query: 670 SYKFIATL 677
+ + L
Sbjct: 154 ARRLAEAL 161
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 36.9 bits (86), Expect = 0.022
Identities = 42/261 (16%), Positives = 76/261 (29%), Gaps = 71/261 (27%)
Query: 477 IHRVGALRNRRNPVII--YGYGGYGVSVLP--TFSISRCMFLRHFNGIYAIPNIRGG--- 529
I R+ + P++I +G GG + ++P + + G A
Sbjct: 7 IPRIEKPGDPAAPLLILLHGLGGDELDLVPLPELILPNATLV-SPRGPVAENGGPRFFRR 65
Query: 530 GELGEDWHNAGRLLKKQNCFDDF--QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587
+ G + L + +F + A EY I+ I ++G S G + +
Sbjct: 66 YDEGS--FDQEDLDLETEKLAEFLEELAEEYGID-----SSRIILIGFSQGANIALSLGL 118
Query: 588 QRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPN 647
P L+ A++ G L ++ P+
Sbjct: 119 TLPGLFAGAILFSGML-----------------------------------PLEPELLPD 143
Query: 648 NTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPL 707
P L+ G D VP + L + + + GH
Sbjct: 144 LAGTP-ILLSHGTEDPVVPLALAEALAEYLTASGADVEVR--------WHEGGH------ 188
Query: 708 MKSI--EEMTDIYVFLMKSLG 726
I EE+ +L +LG
Sbjct: 189 --EIPPEELEAARSWLANTLG 207
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 36.8 bits (85), Expect = 0.033
Identities = 47/220 (21%), Positives = 72/220 (32%), Gaps = 48/220 (21%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAI-PNI 526
G VP+ + R PV++Y +GG V + L G + +
Sbjct: 60 SGDGVPVRVY-RPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDY 118
Query: 527 RGGGELG-----EDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 581
R E ED + A R L+ AAE I+ P I + G S GG L
Sbjct: 119 RLAPEHPFPAALEDAYAAYRWLRAN--------AAELGID-----PSRIAVAGDSAGGHL 165
Query: 582 VG-----ACLNQRPELYGAALI--------------LVGALDMLRFNKFTIAYYSESEFG 622
A P LI G D+L A++++ G
Sbjct: 166 ALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGYGEADLLDAAAIL-AWFADLYLG 224
Query: 623 SPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHD 662
+ ++ SPL + + + P TL+ T + D
Sbjct: 225 AAPDREDPE----ASPLAS----DDLSGLPPTLIQTAEFD 256
>gnl|CDD|204178 pfam09246, PHAT, PHAT. The PHAT (pseudo-HEAT analogous topology)
domain assumes a structure consisting of a layer of
three parallel helices packed against a layer of two
antiparallel helices, into a cylindrical shaped
five-helix bundle. It is found in the RNA-binding
protein Smaug, where it is essential for high-affinity
RNA binding.
Length = 108
Score = 33.7 bits (77), Expect = 0.080
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGL 727
+LLR+E+D GQ L +EE+T+I + MK +G
Sbjct: 4 ILLRLEKDLLGGQRAQLSTVVEELTNIVLTPMKPIGS 40
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 34.3 bits (79), Expect = 0.18
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 27/160 (16%)
Query: 454 PTLFQTKQVYFRSKDGTRVPMYI----IHRVGALRNRRNPVIIYGYGGYGVSVLPTFSIS 509
P + YF DGTR+ G + V+++G G + +
Sbjct: 4 PVPRTRTEGYFTGADGTRLRYRTWAAPEPPKGVV------VLVHGLGEH------SGRYE 51
Query: 510 RCMFLRHFNGI--YAIPNIRGGG--ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYT 565
G YA+ ++RG G G+ H + + DD A E I +
Sbjct: 52 ELADDLAARGFDVYAL-DLRGHGRSPRGQRGH----VDSFADYVDDLDAFVET-IAEPDP 105
Query: 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM 605
++G S GGL+ L + P ++ AL +
Sbjct: 106 GLPVF-LLGHSMGGLIALLYLARYPPRIDGLVLSSPALGL 144
>gnl|CDD|226040 COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 312
Score = 34.0 bits (78), Expect = 0.26
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVG 601
+A ++N+ P + + G SNGG + + P+++ A + G
Sbjct: 126 GFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAG 177
>gnl|CDD|223489 COG0412, COG0412, Dienelactone hydrolase and related enzymes
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 236
Score = 33.1 bits (76), Expect = 0.37
Identities = 32/155 (20%), Positives = 48/155 (30%), Gaps = 48/155 (30%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFN 609
D AA +Y+ + PK I ++G GG L + PE+ A
Sbjct: 94 ADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAV------------- 140
Query: 610 KFTIAYYSESEFGSPNNKTHFHNLLSYSPLH--NIKVPPNNTQYPATLVLTGDHDDRVPP 667
A+Y G L++ IKVP L+ D +P
Sbjct: 141 ----AFY-----GG---------LIADDTADAPKIKVP--------VLLHLAGEDPYIPA 174
Query: 668 LHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
A L++ + L + AGHG
Sbjct: 175 ADVDALAAALEDAG--VKVD-----LEIYPGAGHG 202
>gnl|CDD|226375 COG3857, AddB, ATP-dependent nuclease, subunit B [DNA replication,
recombination, and repair].
Length = 1108
Score = 32.8 bits (75), Expect = 0.94
Identities = 25/141 (17%), Positives = 36/141 (25%), Gaps = 23/141 (16%)
Query: 482 ALRNRRNPVIIYGY--GGYGVSVLPTFSISRC--MFLRHFNGIYAIPNI--RGGGELGED 535
L + V I +I R L NI E+
Sbjct: 210 LLMKKCARVTIGLTADKKAYTKGSEEGNIFRASKKTLFRLLSKAEELNISIEQYNEVLYK 269
Query: 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 595
+ L +N FD I K +I+I NQ+ E+ G
Sbjct: 270 FTKLQDLAHLENDFDQLP----IEIYAK--DADHISIW----------QASNQKEEIEGV 313
Query: 596 AL-ILVGALDMLRFNKFTIAY 615
A I + R+ I
Sbjct: 314 AREIRQKIREGYRYKDIAILL 334
>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.
Length = 343
Score = 32.4 bits (74), Expect = 0.97
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 15/67 (22%)
Query: 274 GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTT-KNAPKGKVVT 332
GSDLHY+ +GK+ G F +K P M HE+I IV + +G+ V
Sbjct: 41 GSDLHYYQ-----EGKV-GNFVIKA--P-MVLGHEVIG-----KIVHSDSSGLKEGQTVA 86
Query: 333 INLNNPC 339
IN + PC
Sbjct: 87 INPSKPC 93
>gnl|CDD|225989 COG3458, COG3458, Acetyl esterase (deacetylase) [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 321
Score = 32.0 bits (73), Expect = 1.1
Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 34/168 (20%)
Query: 450 PEFEPTLFQTKQV-----YFRSKDGTRVPMYIIHRVGALRNRRNPVII--YGYGGYGVSV 502
P E + F +V F G R+ +++ + + P ++ +GYGG G
Sbjct: 42 PVLERSDFTLPRVEVYDVTFTGYGGARIKGWLV--LPRHEKGKLPAVVQFHGYGGRGGEW 99
Query: 503 LPTFSISRCMFLRHFNGIYAIPNIRGGGELGED------------WHNAGRLLKKQN--- 547
+ + + ++RG G +D + G L +K
Sbjct: 100 HDMLHWAVAGY------AVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYY 153
Query: 548 --CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC--LNQRPE 591
F D A E + + + I + GGS GG L A L+ R +
Sbjct: 154 RGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIK 201
>gnl|CDD|234884 PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.
Length = 341
Score = 30.6 bits (70), Expect = 3.4
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 146 LYAFSDNGKHFAYCLSKSGSDWNTLHI 172
+ S G+H + K G WNTL +
Sbjct: 34 GFEPSGEGEHLLVRIRKRG--WNTLFV 58
>gnl|CDD|215424 PLN02790, PLN02790, transketolase.
Length = 654
Score = 30.0 bits (68), Expect = 5.4
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 129 VFLDPNKLSKDGTTALKLYAFSDN-GKHF-AYCLSKSGSDWNTLHIKDVDTGKD 180
V D N +S DG T AF+++ K + A W+T+ +K+ +T D
Sbjct: 171 VLYDDNHISIDGDTE---IAFTEDVDKRYEAL-------GWHTIWVKNGNTDYD 214
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 29.4 bits (66), Expect = 6.5
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 344 KTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSV-MDLHDLN-TGKRLHSFPLDLGQITH 401
+ L+ ++ +LDV A ++L+ Q ++ M HDLN T + H L
Sbjct: 152 QLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLL 211
Query: 402 ISGRRK 407
SGRR+
Sbjct: 212 ASGRRE 217
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 29.3 bits (66), Expect = 6.6
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 560 INKKY-TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL--DMLRFNKFTIA 614
I +Y T + I+G S GGL V L P+ +G ++ +L + +
Sbjct: 128 IEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREIES 185
>gnl|CDD|233151 TIGR00852, pts-Glc, PTS system, maltose and glucose-specific
subfamily, IIC component. The PTS Glucose-Glucoside
(Glc) Family (TC 4.A.1) Bacterial PTS transporters
transport and concomitantly phosphorylate their sugar
substrates, and typically consist of multiple subunits
or protein domains. The Glc family includes permeases
specific for glucose, N-acetylglucosamine and a large
variety of a- and b-glucosides. However, not all
b-glucoside PTS permeases are in this class, as the
cellobiose (Cel) b-glucoside PTS permease is in the Lac
family (TC #4.A.3). These permeases show limited
sequence similarity with members of the Fru family (TC
#4.A.2). Several of the E. coli PTS permeases in the Glc
family lack their own IIA domains and instead use the
glucose IIA protein (IIAglc or Crr). Most of these
permeases have the B and C domains linked together in a
single polypeptide chain, and a cysteyl residue in the
IIB domain is phosphorylated by direct phosphoryl
transfer from IIAglc(his~P). Those permeases which lack
a IIA domain include the maltose (Mal),
arbutin-salicin-cellobiose (ASC), trehalose (Tre),
putative glucoside (Glv) and sucrose (Scr) permeases of
E. coli. Most, but not all Scr permeases of other
bacteria also lack a IIA domain. This model is specific
for the IIC domain of the Glc family PTS transporters
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids, Signal transduction, PTS].
Length = 289
Score = 28.8 bits (65), Expect = 9.3
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 554 AAAEYMINKKYTKPKYITIMGGSNGGLLVG 583
A Y + + +P ++G + +
Sbjct: 223 EPAMYGVALRERRPFVAGLIGSALLTAFLT 252
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 28.5 bits (64), Expect = 9.9
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 76 DREAIKEQLL-RMANYEKYSAPQRQE 100
EA+ + +L R +Y Y PQ
Sbjct: 158 SLEAVTDSILRRKPDYVNYICPQFSY 183
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0673 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,164,673
Number of extensions: 3776332
Number of successful extensions: 2964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2927
Number of HSP's successfully gapped: 26
Length of query: 734
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 630
Effective length of database: 6,324,786
Effective search space: 3984615180
Effective search space used: 3984615180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)