RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4818
(734 letters)
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia,
beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus
scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A*
3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A
1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A
3ddu_A*
Length = 710
Score = 887 bits (2294), Expect = 0.0
Identities = 328/712 (46%), Positives = 463/712 (65%), Gaps = 8/712 (1%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIK 81
YP V +DET DYHG K+ DPY WLE P +T+ F QN I+ P+ + R K
Sbjct: 5 QYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYK 64
Query: 82 EQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGT 141
E++ + +Y KYS ++ YFYF+N GLQN +LYVQ +L G VFLDPN LS DGT
Sbjct: 65 ERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGT 124
Query: 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
AL+ YAFS++G++FAY LS SGSDW T+ VD K+ P+VL+ VKF ++WTHD KG
Sbjct: 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKG 184
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG 261
FYN Y +G +DGTET+ ++ QK+YYHVLGT+Q +DI EFP+ +E++D G
Sbjct: 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG 244
Query: 262 RYLLVSTSNNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
RY+L+S + L Y DL I+G +I + ++ + N G K
Sbjct: 245 RYVLLSIREGCDPVNRLWYCDLQQ-ESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFK 303
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T +++P +++ I+ +P E WK L+PE E L+ VA V +N L++ Y+ +V++ + L
Sbjct: 304 TNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363
Query: 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
HDL TG L FPL++G + SG++K E+FY FTSFL PG IYHC++ +++ +
Sbjct: 364 HDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL-----TKEELE 418
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
P +FRE V + + +QT Q+++ SKDGT++PM+I+H+ G + +P +YGYGG+ +
Sbjct: 419 PRVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNI 478
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+ P +S+SR +F+RH G+ A+ NIRGGGE GE WH G L KQNCFDDFQ AAEY+I
Sbjct: 479 SITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLI 538
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+ YT PK +TI GGSNGGLLV C NQRP+L+G + VG +DML+F+K+TI + ++
Sbjct: 539 KEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTD 598
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPN-NTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G ++K HF L+ YSPLHN+K+P + QYP+ L+LT DHDDRV PLHS KFIATLQ
Sbjct: 599 YGCSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQY 658
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
+G Q NPLL+ V+ AGHG G P K IEE++D++ F+ + L + + P
Sbjct: 659 IVGRSRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB:
3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A*
3mun_A*
Length = 693
Score = 810 bits (2096), Expect = 0.0
Identities = 275/715 (38%), Positives = 400/715 (55%), Gaps = 34/715 (4%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIK 81
YP R+ E V D Y G + DPYRWLE ET+ + QN ++ Y R AIK
Sbjct: 11 HYPVTRQGEQV-DHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIK 69
Query: 82 EQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGT 141
E+L NY K AP R+ +++F N GLQN ++L+ Q+ EVFLDPN LS DGT
Sbjct: 70 EKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFLDPNTLSPDGT 128
Query: 142 TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
TAL +FS +G+ AY LS +GSDW +H+ DV++ + LK+VKF ISW + +G
Sbjct: 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGN-EG 187
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVV-EFPNGRSLGLHSEVTDC 260
FFY+ Y +G + K+Y+H LGT Q+ D V P + + VT+
Sbjct: 188 FFYSSYDKPDG---SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTED 244
Query: 261 GRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVK 320
R+LL+S +N+T G+ L+ DL + PL TV +D ++ N G L +
Sbjct: 245 DRFLLISAANSTSGNRLYVKDLSQ-ENA------PLLTVQGDLDADVSLVDNKGSTLYLL 297
Query: 321 TTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDL 380
T ++AP ++VT++ NP +W+ LIPE + L V + L Y+ + + ++
Sbjct: 298 TNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-VLTV--HSGSGYLFAEYMVDATARVEQ 354
Query: 381 HDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
D + LG ++ +G+ +++GF ++ QP T+Y
Sbjct: 355 FDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP-------KSGA 407
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
+++R + P F+P + ++Q +++SKDGTRVP+ I +R G + NP I+YGYGG+ V
Sbjct: 408 ISLYRASAAP-FKPEDYVSEQRFYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDV 466
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
S+ P+FS+S +L G+YA+ N+RGGGE G+ WH AG KQN FDDF AAAEY+
Sbjct: 467 SLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLK 525
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+ YT+ + I GGSNGGLLVGA + QRP+L AL VG LDMLR++ FT +
Sbjct: 526 AEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVLDMLRYHTFTAGTGWAYD 585
Query: 621 FGSP-NNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+G+ +++ F L YSPLHN++ YP+T+V T DHDDRV P HS+KF ATLQ
Sbjct: 586 YGTSADSEAMFDYLKGYSPLHNVR---PGVSYPSTMVTTADHDDRVVPAHSFKFAATLQA 642
Query: 680 KIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
+P L+R+E +AGHG GTP+ K IE+ DIY F + +G + P P
Sbjct: 643 ----DNAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYRELPRQP 693
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase,
protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Length = 695
Score = 807 bits (2088), Expect = 0.0
Identities = 243/711 (34%), Positives = 377/711 (53%), Gaps = 34/711 (4%)
Query: 23 YPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
YP R ++ V D HG+++ DPYRWLE E Q + QN + REA+
Sbjct: 3 YPATRAEQVV-DTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAA 61
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLDPNKLSKDGTT 142
+ + + S P R+ +FY + +ILY ++ +G +V LDPN SKDGT
Sbjct: 62 RFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTV 121
Query: 143 ALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDY-PEVLKNVKFPSISWTHDHKG 201
+L +A S +GK A+ + +D LH+ DVD+G+ +V++ K+ + WT D KG
Sbjct: 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKG 181
Query: 202 FFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCG 261
F+Y I YH LGTE KD V E + L S+++ G
Sbjct: 182 FYYEWLPTDPSI---KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG 238
Query: 262 RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKT 321
+YL V +D+++ G+ + ++ G+ +E+ V T
Sbjct: 239 KYLFVYILRGWSENDVYWKRP---------GEKDFRLLVKGVGAKYEV-HAWKDRFYVLT 288
Query: 322 TKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLH 381
+ AP+ +V ++ P +WK ++PED + +L V+ V L + Y+++ S + +
Sbjct: 289 DEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347
Query: 382 DLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFK 440
L GK + + L +G +++ G ++ +Y FTSF P IY ++ K
Sbjct: 348 TL-KGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV-------STGK 399
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
++ + VP P +Q +QV++ SKDGT+VPM+++HR R+ P ++YGYGG+ V
Sbjct: 400 SELWAKVDVP-MNPEQYQVEQVFYASKDGTKVPMFVVHRKDLKRDGNAPTLLYGYGGFNV 458
Query: 501 SVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMI 560
++ F S +L G+YA+ N+RGGGE G+ WH+AGRL KKQN FDDF AAAEY++
Sbjct: 459 NMEANFRSSILPWL-DAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLV 517
Query: 561 NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESE 620
+KYT+PK + I GGSNGGLLVGA + QRPELYGA + V LDM+R++ F E
Sbjct: 518 QQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTWIPE 577
Query: 621 FGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+G+ F L +YSP H+++ + +YPA L++ DHDDRV P+H+ KF+A +Q
Sbjct: 578 YGTAEKPEDFKTLHAYSPYHHVR---PDVRYPALLMMAADHDDRVDPMHARKFVAAVQNS 634
Query: 681 IGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
G+ LLR+E +AGHG + K+IE D+Y FL + L ++
Sbjct: 635 PGN----PATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQGAQ 681
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study,
celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Length = 741
Score = 803 bits (2077), Expect = 0.0
Identities = 245/717 (34%), Positives = 375/717 (52%), Gaps = 39/717 (5%)
Query: 22 PYPKVRKDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFM--QNNISNPYCQNHTDREA 79
PYP + V +D+ G K+ DP+RWLE + ++ ++ Q+ + Y + +R A
Sbjct: 39 PYPASPQVPLV-EDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAA 97
Query: 80 IKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQR---NLTGSTEVFLDPNKL 136
+++++ + +YE++ PQR+ + FY N GL N S L V+ + V LDPN
Sbjct: 98 LEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTW 157
Query: 137 SKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWT 196
+KDG TAL +A SD+G+ AY + GSDW T+ V GK + LK VKF ++W
Sbjct: 158 AKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWL 217
Query: 197 HDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSE 256
+ Y+++ + + Q ++ H LGT Q D PV P G +
Sbjct: 218 GN-DALLYSRFAE--PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS 274
Query: 257 VTDCGRYLLVSTSNNTQG-SDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGP 315
V+ GR++++++S T + +H + + G P+ +IP + + + G
Sbjct: 275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG------PVTALIPDLKAQWDFVDGVGD 328
Query: 316 ELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375
+L + AP K+V ++L+ + T++PE ++ V +A N+L YI + +
Sbjct: 329 QLWFVSGDGAPLKKIVRVDLSGS-TPRFDTVVPESKDNLESV--GIAGNRLFASYIHDAK 385
Query: 376 SVMDLHDLNTGKRLHSFPLD-LGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENIT 434
S + DL+ GK + L +G + +SGR + F+SF QP T+ +
Sbjct: 386 SQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP----- 439
Query: 435 DQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYG 494
K T + + F+P F+ +QV++ SKDGT+VPM+I+ R A P ++YG
Sbjct: 440 --ATAKTTPWEPVHLT-FDPADFRVEQVFYPSKDGTKVPMFIVRRKDA--KGPLPTLLYG 494
Query: 495 YGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA 554
YGG+ V++ P FS ++ G +A+ N+RGGGE G+ WH+AGR KKQN FDDF A
Sbjct: 495 YGGFNVALTPWFSAGFMTWIDSG-GAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIA 553
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
A E++I T + I GGSNGGLL+GA NQRP+L+ AA VG +DMLRF++FT
Sbjct: 554 AGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAG 613
Query: 615 YYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFI 674
Y ++G P + + L YSP HN++ + YPA LV T D DDRV P HS+K+
Sbjct: 614 RYWVDDYGYPEKEADWRVLRRYSPYHNVR---SGVDYPAILVTTADTDDRVVPGHSFKYT 670
Query: 675 ATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYYP 731
A LQ P L+R+E AGHG G P+ K IEE D+ FL GL P
Sbjct: 671 AALQT----AAIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTPRP 723
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease
inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A
{Leishmania major}
Length = 751
Score = 668 bits (1727), Expect = 0.0
Identities = 160/748 (21%), Positives = 296/748 (39%), Gaps = 70/748 (9%)
Query: 14 AEKVEFTGPYPKVR-KDETVEDDYHGMKIKDPYRWLEYPHCAETQIFNFM--QNNISNPY 70
A K V +D +DPY W+ + + + +
Sbjct: 36 AAKKPHRVTLGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQAR 95
Query: 71 CQNHTD-REAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQR-----NLT 124
+ R+ I + + N + SAP +Y + + I
Sbjct: 96 SADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDV 155
Query: 125 GSTEVFLDPNKLSKDGT--TALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDT-GKDY 181
+ EV +D N++++ +++ A+ + SG++ T+ K + +
Sbjct: 156 AAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI 215
Query: 182 PEVLKNVKFPSISWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIP 241
+ + I W DH FY ET K++ HV+G Q +D+
Sbjct: 216 ADKVSGT-NGEIVWGPDHTSLFYVTK---------DET--LRENKVWRHVMGKLQSEDVC 263
Query: 242 VVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIP 301
+ E N L + S + + +++H DL K + L+ V P
Sbjct: 264 LYEEHNPL-FSAFMYKAADTNTLCIG-SQSPETAEVHLLDLR-----KGNAHNTLEIVRP 316
Query: 302 -GMDHHHEIIANNGPELIVKTTKN-APKGKVVTINLNNPCEKNWKT-LIPEDENRTLDVV 358
+++ + L++ T + A K++ P +W L+ E+ ++ +
Sbjct: 317 REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQP--SDWSHVLVDHSEDVFMESI 374
Query: 359 AAVANNKLIVHYIQNVRSVMDLHDLNT-------GKRLHSFPLD-----LGQITHISGRR 406
A +N L+V + + + ++ G L ++ + +
Sbjct: 375 AVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEY 433
Query: 407 KYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVP-EFEPTLFQTKQVYFR 465
+ ++S P T + + D T + V F+ ++ ++ +
Sbjct: 434 EEPTFRMEYSSLATPNTWFDVSP-------QDHSRTAVKVREVGGGFDAANYKVERRFAT 486
Query: 466 SKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
+ D T++P+ +++ ++ P ++YGYG YG+S+ P FSI + I+AI +
Sbjct: 487 APDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR-GMIFAIAH 545
Query: 526 IRGGGELGEDWHNAG-RLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA 584
IRGG ELG W+ G + L K+N F DF AAAE+++N K T P + G S GGLL+GA
Sbjct: 546 IRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGA 605
Query: 585 CLNQRPELYGAALILVGALDMLRFN---KFTIAYYSESEFGSPNNKTHFHNLLSYSPLHN 641
LN RP+L+ AL V +D++ + E+G+PN ++ +LSYSP+ N
Sbjct: 606 VLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDN 665
Query: 642 IKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH 701
++ +YP +V G HD RV K+++ L+E N +LL ++ ++GH
Sbjct: 666 VR----AQEYPNIMVQCGLHDPRVAYWEPAKWVSKLRECKT----DNNEILLNIDMESGH 717
Query: 702 GQGTPLMKSIEEMTDIYVFLMKSLGLKY 729
K +E F+ K L
Sbjct: 718 FSAKDRYKFWKESAIQQAFVCKHLKSTV 745
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 115 bits (289), Expect = 8e-27
Identities = 64/396 (16%), Positives = 119/396 (30%), Gaps = 60/396 (15%)
Query: 360 AVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGF-TSF 418
A N LI +V+ + D +G+ + + G S
Sbjct: 300 APLANGLIAVVHGKGAAVLGILDPESGELV---DAAGPWTEWAATLTVSGTRAVGVAASP 356
Query: 419 LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF-QTKQVYFRSKDGTRVPMYII 477
+ D + +P + + + F + DG + +I
Sbjct: 357 RTAYEVVEL-------DTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY 409
Query: 478 ----HRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRH--F--NGIYAI--PNIR 527
+ P ++ +GG PT + + L F G + N
Sbjct: 410 PPHSPDFTGPADELPPYVVMAHGG------PTSRVPAVLDLDVAYFTSRG-IGVADVNYG 462
Query: 528 GGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN 587
G G + R +D A A + + + + GGS GG + L
Sbjct: 463 GSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLV 522
Query: 588 QRPELYGAALILVGALDMLRFNKFTI----AYYSESEFGSPNNKTHFHNLLSYSPLH--- 640
++Y +L LD+L + + Y + GS +PL
Sbjct: 523 S-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEFPER--YRDRAPLTRAD 579
Query: 641 NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAG 700
++VP L+L G D PP +F+ + +P+ L E G
Sbjct: 580 RVRVP--------FLLLQGLEDPVCPPEQCDRFLEAVAGC--GVPHA----YLSFE-GEG 624
Query: 701 HGQGTP--LMKSIEEMTDIYVFLMKSLGLKYYPDMP 734
HG +++++E + G++ +P
Sbjct: 625 HGFRRKETMVRALEAELS---LYAQVFGVE-VAGVP 656
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 111 bits (278), Expect = 1e-25
Identities = 96/607 (15%), Positives = 184/607 (30%), Gaps = 105/607 (17%)
Query: 116 ILYVQRNLTGSTEVFL----DPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLH 171
+L V GS +L + KL+ L G+ G++ + L
Sbjct: 36 LLVVG-FSEGSVNAYLYDGGETVKLN-REPINSVLDPHYGVGRVILVRDVSKGAEQHALF 93
Query: 172 IKDVDTGKDYPEVLKNVKFPSI-SWTHDHKGFFYNQYCDINGTADGTETTAHMGQKIYYH 230
+ + + L+ VK I S + + T D + +
Sbjct: 94 KVNTSRPGE-EQRLEAVKPMRILSGVDTGEAVVF-----TGATEDR----------VALY 137
Query: 231 VLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290
L ++ + P G G + L +L S
Sbjct: 138 ALDGGGLRE--LARLP-----GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS------ 184
Query: 291 SGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPED 350
G + G I ++ + A + ++VT++ + + + L
Sbjct: 185 -GGLRVFDSGEGSFSSASISPGM--KVTA-GLETAREARLVTVDPRD---GSVEDLELPS 237
Query: 351 ENRT------LDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQITHISG 404
++ + + + + + +L V + RS + + G +
Sbjct: 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFIDG-------ERVEAPQGNHGRVVL 290
Query: 405 RRKYNEVFYGFTSFLQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEP-TLFQTKQVY 463
R ++ TS P I +P E +PE ++ ++ V+
Sbjct: 291 WR--GKLVTSHTSLSTPPRIV---------SLPSGEPL--LEGGLPEDLRRSIAGSRLVW 337
Query: 464 FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAI 523
S DG+RVP Y++ A P ++ +GG ++ G + +
Sbjct: 338 VESFDGSRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFAASLAAA--G-FHV 392
Query: 524 --PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 581
PN RG GE+W +D AAA + + IMG S GG +
Sbjct: 393 VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLASE--LYIMGYSYGGYM 450
Query: 582 VGACLNQRPELYGAALILVGALDMLRFNKFT---IAYYSESEFGSPNNKTHFHNLLSYSP 638
L +P L+ A + +D + + + E G + S SP
Sbjct: 451 TLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSREI-----MRSRSP 505
Query: 639 LH---NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRV 695
++ IK P ++ + R P + + L + ++ +
Sbjct: 506 INHVDRIKEP--------LALIHPQNASRTPLKPLLRLMGELLAR--GKTFE----AHII 551
Query: 696 EQDAGHG 702
DAGH
Sbjct: 552 P-DAGHA 557
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 83.0 bits (205), Expect = 1e-17
Identities = 38/277 (13%), Positives = 79/277 (28%), Gaps = 47/277 (16%)
Query: 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFL-RH 516
+ + + ++ G P +++ +G S + R
Sbjct: 5 KLSSIEIPV-GQDELSGTLLTPTGM------PGVLFVHGW-------GGSQHHSLVRARE 50
Query: 517 FNGI-YAI--PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIM 573
G+ ++RG + R DD +AA + + + Y I ++
Sbjct: 51 AVGLGCICMTFDLRGHEGYASMRQSVTR----AQNLDDIKAAYDQLASLPYVDAHSIAVV 106
Query: 574 GGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNL 633
G S GG L +RP AL +++ ++ ++ + +
Sbjct: 107 GLSYGGYLSALLTRERPV-EWLALRSPALYKDAHWDQPKVSLNADPDLMDYRRR--ALAP 163
Query: 634 LSYSPLH---NIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNP 690
L K L++ ++D VP +
Sbjct: 164 GDNLALAACAQYKGD--------VLLVEAENDVIVPHPVMRNYADAFT--------NARS 207
Query: 691 LLLRVEQDAGHGQGTPLMKSIEEMTDIYV-FLMKSLG 726
L RV A H + +E T + +L + +
Sbjct: 208 LTSRVIAGADHALSVK--EHQQEYTRALIDWLTEMVV 242
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 75.6 bits (186), Expect = 5e-15
Identities = 50/310 (16%), Positives = 82/310 (26%), Gaps = 67/310 (21%)
Query: 450 PEFEPTLFQTKQ-----VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSV 502
P+ +P + + ++S R+ + +P I+ GY
Sbjct: 42 PDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKE---GPHPAIVKYHGYNA----- 93
Query: 503 LPTFSISRCMFLRHFNGIYAI--PNIRGGGELGED----------WHNAGRLLKKQN--- 547
++ + YA +RG + W G L K
Sbjct: 94 --SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYR 151
Query: 548 -CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDML 606
+ D A E + + I + GGS GG L A A +
Sbjct: 152 GVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFE 211
Query: 607 RFNKFTIAYYSES------EFGSP-NNKTHFHNLLSYSPLH---NIKVPPNNTQYPATLV 656
R + GSP L + ++ +KVP L+
Sbjct: 212 RAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP--------VLM 263
Query: 657 LTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLMKSIEEMTD 716
G D PP + L + L+V + GH P T+
Sbjct: 264 SIGLIDKVTPPSTVFAAYNHL----------ETKKELKVYRYFGHE-YIP-----AFQTE 307
Query: 717 IYVFLMKSLG 726
F + L
Sbjct: 308 KLAFFKQILK 317
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 75.6 bits (186), Expect = 7e-15
Identities = 46/282 (16%), Positives = 76/282 (26%), Gaps = 57/282 (20%)
Query: 451 EFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISR 510
F+ + + +YF G R+ I ++P +I +G S
Sbjct: 74 SFQVSFAECYDLYFTGVRGARIHAKYIKPKTE---GKHPALIRFHGYSSNSGDWND---- 126
Query: 511 CMFLRHFNGIYAI--PNIRGGGELGEDWHNAGR----------------LLKKQNCFDDF 552
G + + ++RG G +D + ++ F D
Sbjct: 127 -KLNYVAAG-FTVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDT 184
Query: 553 QAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFT 612
A ++N + +MG S GG L AC P + D R
Sbjct: 185 AQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDLD 244
Query: 613 IAYYSESEFG---------SPNNKTHFHNLLSYSPLH---NIKVPPNNTQYPATLVLTGD 660
+A + E F L + IK L+ G
Sbjct: 245 LAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD--------VLMCVGL 296
Query: 661 HDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
D PP + +Q ++V D GH
Sbjct: 297 MDQVCPPSTVFAAYNNIQS----------KKDIKVYPDYGHE 328
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 68.5 bits (167), Expect = 2e-12
Identities = 50/258 (19%), Positives = 79/258 (30%), Gaps = 43/258 (16%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
DG +P+Y+ G +P +I G S + A +
Sbjct: 135 DGIPMPVYVRIPEGP---GPHPAVIMLGGLESTK-----EESFQMENLVLDRGMATATFD 186
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
G GE+ E AG + A + + + + I ++G S GG
Sbjct: 187 GPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKS 240
Query: 586 LNQRPELYGAALILVGAL-DMLRFNKFTIAYYSESEFGSPNNKT---HFHNLLSYSP--- 638
P L AA I G D+ ++ T ++ S + H +
Sbjct: 241 AACEPRL--AACISWGGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDV 298
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
L I P T +L G D VP + + + L L VE+D
Sbjct: 299 LSQIACP--------TYILHGV-HDEVPLSFVDTVLELVPAE---------HLNLVVEKD 340
Query: 699 AGHGQGTPLMKSIEEMTD 716
H ++ EM D
Sbjct: 341 GDHCCHNLGIRPRLEMAD 358
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 64.8 bits (157), Expect = 4e-11
Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 47/268 (17%)
Query: 456 LFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLR 515
F V+ +S RV + G P II +G G R L
Sbjct: 129 HFLPPGVWRQSVRAGRVRATLFLPPGP---GPFPGIIDIFGIGG-----GLLEYRASLLA 180
Query: 516 HFNGIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMG 574
+G + +L + N + F+ A YM+ K I ++G
Sbjct: 181 G-HGFATLALAYYNFEDLPNNMDNIS--------LEYFEEAVCYMLQHPQVKGPGIGLLG 231
Query: 575 GSNGGLLVGACLNQRPELYGAALILVGALDM----------LRFNKFTIAYYSESEFGSP 624
S G + + + + I + + + + + G
Sbjct: 232 ISLGADICLSMASFLKNVSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLV 291
Query: 625 NNKTHFHNLL------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
+ + L+ S P+ + P L++ G D + ++
Sbjct: 292 DIVDIRNALVGGYKNPSMIPIEKAQGP--------ILLIVGQDDHNWRSELYAQTVSERL 343
Query: 679 EKIGSLPYQKNPLLLRVEQDAGHGQGTP 706
+ G Q GH P
Sbjct: 344 QAHGKEKPQI-----ICYPGTGHYIEPP 366
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 63.8 bits (155), Expect = 5e-11
Identities = 46/283 (16%), Positives = 73/283 (25%), Gaps = 50/283 (17%)
Query: 450 PEFEPTLFQTKQ-----VYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLP 504
P FE K V F G R+ +++ V L + P ++ G G P
Sbjct: 54 PVFERMESHLKTVEAYDVTFSGYRGQRIKGWLL--VPKLEEEKLPCVVQYIGYNGGRGFP 111
Query: 505 ------------TFSI-SRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQ----N 547
F + +R G + G L +
Sbjct: 112 HDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRR 171
Query: 548 CFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR 607
F D A E + + I I GGS GG + A + + R
Sbjct: 172 VFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRR 231
Query: 608 FNKFT--IAYYSESEFGSPNNKTH---FHNLLSYSPLH---NIKVPPNNTQYPATLVLTG 659
+ Y + F + F L + ++ K+P L G
Sbjct: 232 AVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP--------ALFSVG 283
Query: 660 DHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
D+ PP + P +R+ H
Sbjct: 284 LMDNICPPSTVFAAYNYYAG----------PKEIRIYPYNNHE 316
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 64.1 bits (156), Expect = 1e-10
Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 10/224 (4%)
Query: 459 TKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRH 516
+K++ F + T+ +I ++++ P+++ Y G F ++
Sbjct: 473 SKKLDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLAST 532
Query: 517 FNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGS 576
N I A + RG G G+ +A +D AA + K I I G S
Sbjct: 533 ENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWS 592
Query: 577 NGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY 636
GG + L ++ + + ++ + Y+E G P + + + +
Sbjct: 593 YGGYVTSMVLGSGSGVFKCGIAVAPVSR----WEYYDSVYTERYMGLPTPEDNLDHYRNS 648
Query: 637 SPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+ + + N + L++ G DD V S + L +
Sbjct: 649 TVMSRAE----NFKQVEYLLIHGTADDNVHFQQSAQISKALVDV 688
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 61.8 bits (150), Expect = 5e-10
Identities = 39/215 (18%), Positives = 74/215 (34%), Gaps = 10/215 (4%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRHFNGIYAIPN 525
D + +I R+++ P++I YGG SV F+++ + A+ +
Sbjct: 476 DEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVD 535
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
RG G+ A +D A I + K I I G S GG +
Sbjct: 536 GRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLA 595
Query: 586 LNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVP 645
L L+ + + ++ + Y+E G P + + + + + +
Sbjct: 596 LASGTGLFKCGIAVAPVSS----WEYYASVYTERFMGLPTKDDNLEHYKNSTVMARAE-- 649
Query: 646 PNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
+ L++ G DD V +S + L
Sbjct: 650 --YFRNVDYLLIHGTADDNVHFQNSAQIAKALVNA 682
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 57.1 bits (137), Expect = 3e-09
Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 32/232 (13%)
Query: 477 IHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGE 534
+ + + +++ G G +L + R F + + GE
Sbjct: 13 LSVLARIPEAPKALLLALHGLQGSKEHILA---LLPGYAERGFLLL--AFDAPRHGEREG 67
Query: 535 DWHNAGRLLK----KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP 590
++ + + A + + + GGS G + L +
Sbjct: 68 PPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGF 127
Query: 591 ELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQ 650
G +G+ ++ + + P
Sbjct: 128 RPRGVL-AFIGSGFPMKL----------PQGQVVEDPGVLAL-YQAPPATR----GEAYG 171
Query: 651 YPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
L L G D VP K + L+ Y + L VE+ AGH
Sbjct: 172 GVPLLHLHGSRDHIVPLARMEKTLEALRPH-----YPEGRLARFVEEGAGHT 218
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 58.6 bits (141), Expect = 4e-09
Identities = 60/375 (16%), Positives = 106/375 (28%), Gaps = 61/375 (16%)
Query: 317 LIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRS 376
LI K K V I + + L P+ + + ++ + Y N
Sbjct: 11 LITKVFPEGEKVCAVVIEYPVEIDG--QKLSPDQFSVKVKTGDTYSSRTITKVYANNSGG 68
Query: 377 VMDLHDLNTGKR--LHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENIT 434
+ N GK L DL T + G N Q I+ + N
Sbjct: 69 LSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVD--GNEV 126
Query: 435 DQDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHR-VGALRNRRNPVIIY 493
+ K T + I+ +F + + G +P Y + +R+ P++++
Sbjct: 127 EPFTSKQTDEKHLIIDDFL------AFTFKDPETGVEIP-YRLFVPKDVNPDRKYPLVVF 179
Query: 494 --GYGGYGVSVLPTFSISRC-------MFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLK 544
G G G + +R + P + +
Sbjct: 180 LHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFN 239
Query: 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604
+ ++++ I I G S GG + + PEL+ AA+ + G D
Sbjct: 240 PEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGD 299
Query: 605 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 664
+ S + IK P V + D
Sbjct: 300 V-------------------------------SKVERIKDIP-------IWVFHAEDDPV 321
Query: 665 VPPLHSYKFIATLQE 679
VP +S + L E
Sbjct: 322 VPVENSRVLVKKLAE 336
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 58.3 bits (140), Expect = 5e-09
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 48/265 (18%)
Query: 463 YFRSKDGTRVPMYIIHRVGAL----RNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFN 518
YF R P+ + G L P I+ +G G R L
Sbjct: 145 YFLPPGVRREPVRVGRVRGTLFLPPEPGPFPGIVDMFGTGG-----GLLEYRASLLAG-K 198
Query: 519 GIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 577
G + +L + + F+ A Y+++ K + ++G S
Sbjct: 199 GFAVMALAYYNYEDLPKTMETLH--------LEYFEEAMNYLLSHPEVKGPGVGLLGISK 250
Query: 578 GGLLVGACLNQRPELYGAALILVGALDM----------LRFNKFTIAYYSESEFGSPNNK 627
GG L + + + A +I ++ L ++ G +
Sbjct: 251 GGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIV 310
Query: 628 THFHNLL------SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI 681
++ L S+ P+ + L L G D +
Sbjct: 311 DVLNSPLEGPDQKSFIPVERAEST--------FLFLVGQDDHNWKSEFYANEACKRLQAH 362
Query: 682 GSLPYQKNPLLLRVEQDAGHGQGTP 706
G Q + + GH P
Sbjct: 363 GRRKPQ-----IICYPETGHYIEPP 382
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 55.8 bits (135), Expect = 8e-09
Identities = 46/280 (16%), Positives = 90/280 (32%), Gaps = 49/280 (17%)
Query: 463 YFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGI 520
+ DG ++ Y+ + P+ I G+ G+ ++ L G+
Sbjct: 4 MYIDCDGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIV-AVQE--TLNE-IGV 57
Query: 521 YAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGG 579
+ ++ G G+ + + L K + A +Y + I + G S GG
Sbjct: 58 ATLRADMYGHGKSDGKFEDHT-LFKWL---TNILAVVDYAKKLDFVTD--IYMAGHSQGG 111
Query: 580 LLVGACLNQRPELYGAALILVGA------------LDMLRFNKFTIAYYSESEFGSPNNK 627
L V ++ ALI + L L+F+ I ++ G
Sbjct: 112 LSVMLAAAMERDII-KALIPLSPAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKG 170
Query: 628 THFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687
+ + + P L++ GD D+ VP S F
Sbjct: 171 NYVRVAQTIRVEDFVD----KYTKP-VLIVHGDQDEAVPYEASVAFSKQY---------- 215
Query: 688 KNPLLLRVEQDAGHGQGTPLMKSIEEMTD-IYVFLMKSLG 726
KN L+ + H +E +T+ + F+++ +
Sbjct: 216 KNCKLVTIP-GDTHC----YDHHLELVTEAVKEFMLEQIA 250
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 55.5 bits (134), Expect = 4e-08
Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)
Query: 489 PVIIYGYGG-YGVSVLPTFSISRCMFLRHF--NGIYAIPNI--RGGGELGEDWHNAGRLL 543
PVI+Y YGG + V T+ S + + G YA+ + RG G +
Sbjct: 486 PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG-YAVFTVDSRGSANRGAAFEQVIHRR 544
Query: 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603
Q D +++ ++ + I + G S GG + + +++ + +
Sbjct: 545 LGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI 604
Query: 604 DMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SPLHNIKVPPNNTQYPATLVLTGD 660
D Y E F +P N Y + L +++ G
Sbjct: 605 D----WNRYAIMYGERYFDAPQE-----NPEGYDAANLLKRAGDLKGR-----LMLIHGA 650
Query: 661 HDDRVPPLHSYKFIATLQE 679
D V HS F+ +
Sbjct: 651 IDPVVVWQHSLLFLDACVK 669
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 5e-08
Identities = 69/497 (13%), Positives = 144/497 (28%), Gaps = 151/497 (30%)
Query: 27 RKDETVEDDYHGMKIKDPYRWLEYPHCAE-------TQIFNFMQNNISN---PYCQNHTD 76
K E + + ++ Y++L P E T+++ ++ + N + + +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 77 RE----AIKEQLLR-----------MANYEK----------YSAPQRQENNYFYFHNKGL 111
R +++ LL + K Y + + F+ N
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKN 191
Query: 112 QN--HSILYVQRNLTGSTEVFLDPNKLSK-DGTTALKLYAFSDNGKHFAYCLSKSGSDWN 168
N ++L + + L +DPN S+ D ++ +KL
Sbjct: 192 CNSPETVLEMLQKLL----YQIDPNWTSRSDHSSNIKL-----------------RIHSI 230
Query: 169 TLHIKDVDTGKDYPE---VLKNVKFPSISWTHDHKGFFYNQYCDI-NGTADGTETTAHMG 224
++ + K Y VL NV+ W F N C I T T
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKA-W----NAF--NLSCKILLTTRFKQVTD---- 279
Query: 225 QKIYYHVLGTEQDKDIPVVEFPNG----RSLGLHSEVTDCGRYLLVSTSNNTQGSDLHYF 280
L I + L + DC
Sbjct: 280 ------FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-------------------- 313
Query: 281 DLHSLPDGKISGKFPLK-TVIPGMDHHHEIIANNGPELIVKTTKNAPKGKVVTINLNN-- 337
LP ++ P + ++I +N K ++ +LN
Sbjct: 314 RPQDLPREVLTT-NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESSLNVLE 367
Query: 338 PCE--KNWKTL--IPEDENRTLDVVAAVANNK------LIVHYIQNVRSVMDLHDLNTGK 387
P E K + L P + +++ + + ++V+ + S+++ +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTI 426
Query: 388 RLHSFPLDLGQ------------ITHISGRRKY-NEVF-------YGFTSFLQPGTIYHC 427
+ S L+L + H + + + ++ Y F S + G +H
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHI--G--HHL 481
Query: 428 NIPENITDQDDFKPTIF 444
E+ ++ +F
Sbjct: 482 KNIEH-PERMTLFRMVF 497
Score = 54.9 bits (131), Expect = 8e-08
Identities = 54/386 (13%), Positives = 104/386 (26%), Gaps = 128/386 (33%)
Query: 363 NNKLIVHYIQNVRSVMDLHDLNTGKR--LHSFPLDLGQITHISGRR-KYNEVFYGFTSFL 419
++ + D D+ + L +D HI + + F + L
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-----HIIMSKDAVSGTLRLFWTLL 72
Query: 420 -QPGTIYHCNIPENITDQDDFK---PTIFRETIVPEFEPTLFQTKQVYFRSK---DGTRV 472
+ + + E + ++K I E P ++ + R + D
Sbjct: 73 SKQEEMVQKFVEE--VLRINYKFLMSPIKTEQRQPSMMTRMY----IEQRDRLYNDNQVF 126
Query: 473 PMYIIHR---VGALRN-----RRNP-VIIYGYGGYGVSVLPTFSISRCMFLRHF-NGIYA 522
Y + R LR R V+I G G G + + I+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF- 185
Query: 523 IPNIRGGGELGEDWHNAGR------LLKKQN--CFD---DFQAAAEYMINKKY------T 565
W N +L+ + ++ + +++ N K
Sbjct: 186 -------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 566 KPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLR----FNKF--------TI 613
+ + + L +P Y L LV L ++ +N F T
Sbjct: 233 ELRRL---------------LKSKP--YENCL-LV--LLNVQNAKAWNAFNLSCKILLTT 272
Query: 614 AYYSESEFGSPNNKTHF---HNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670
+ ++F S TH H+ ++ +P L
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTP-------------DEVKSL------------- 306
Query: 671 YKFIATLQEKIGSLPYQK---NPLLL 693
+ L + LP + NP L
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRL 330
Score = 41.0 bits (95), Expect = 0.001
Identities = 72/539 (13%), Positives = 136/539 (25%), Gaps = 198/539 (36%)
Query: 37 HGM----------------KIKD--PYR--WLEYPHCAET-QIFNFMQN---NISNPYCQ 72
G+ K++ ++ WL +C + +Q I +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 73 --NHTDR-----EAIKEQLLRMANYEKYSAPQ----------RQENNYFYFHNKGLQNHS 115
+H+ +I+ +L R+ + Y + N F K
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPY--ENCLLVLLNVQNAKAWNAFNLSCK------ 267
Query: 116 ILYVQRN------LTGS--TEVFLDPNK--LSKDGTTALKLYAFSDNGKHFAYCLSKSGS 165
IL R L+ + T + LD + L+ D +L L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----------LLKYLDCRPQ 316
Query: 166 D-------WNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQY-CD-----ING 212
D N + + E +++ + W + CD I
Sbjct: 317 DLPREVLTTNPRRLSII------AESIRD--GLAT-WD------NWKHVNCDKLTTIIES 361
Query: 213 TADGTETTAHMGQKIYYHVLGT-EQDKDIP--VVEF--PNGRSLGLHSEVTDCGRYLLVS 267
+ + E + + + L IP ++ + + V +Y LV
Sbjct: 362 SLNVLEPAEY---RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 268 TSNNTQGSDLH--YFDLHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIVKTTKNA 325
+ Y +L + + + H I+ + N
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYA-------------LHRSIVDH----------YNI 455
Query: 326 PKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVRSVMDLHDLNT 385
PK + + P + +I H L
Sbjct: 456 PK-----------TFDSDDLIPPYLDQ-------------YFYSHIG--------HHLKN 483
Query: 386 GKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPEN--------ITDQD 437
+ L + VF F FL+ I H + N +
Sbjct: 484 IEHPERMTL-------------FRMVFLDF-RFLE-QKIRHDSTAWNASGSILNTLQQLK 528
Query: 438 DFKPTIFR-----ETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVI 491
+KP I E +V L + ++ SK T ++ AL +
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TD----LLRI--ALMAEDEAIF 580
Score = 39.1 bits (90), Expect = 0.007
Identities = 38/200 (19%), Positives = 67/200 (33%), Gaps = 49/200 (24%)
Query: 28 KDETVEDDYHGMK-----IKDPYRWLEYPHCAETQIFNFMQNNISNPYCQNHTDREAIKE 82
V + + K P I+ ++ + N Y H +I +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEY-ALH---RSIVD 451
Query: 83 QLLRMANYEKYSAPQRQENNYFYFHNKGLQNH--SILYVQRNLTGSTEVFLDPNKLSKDG 140
++ + YFY H + +H +I + +R +T VFLD L +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH---IGHHLKNIEHPER-MTLFRMVFLDFRFLEQ-- 505
Query: 141 TTALKLYAFSDNGKHFAYCLSKSGSDWNTL--------HIKDVDTGKDYPEVLKNV-KF- 190
K+ +H + + SGS NTL +I D D Y ++ + F
Sbjct: 506 ----KI-------RHDSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERLVNAILDFL 552
Query: 191 PSISWTHDHKGFFYNQYCDI 210
P I + +Y D+
Sbjct: 553 PKIE-ENLICS----KYTDL 567
Score = 31.7 bits (71), Expect = 1.0
Identities = 77/626 (12%), Positives = 160/626 (25%), Gaps = 205/626 (32%)
Query: 172 IKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCD-INGTADGTETTAHM------- 223
+ + D KD ++ K++ + D I + D T +
Sbjct: 30 VDNFDC-KDVQDMPKSI--------------LSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 224 GQKIYYHVLGTEQDKDI-----PVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNTQGSDLH 278
+++ + + P+ S+ Y + + D
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-------MTRMY--IEQRDRLYN-DNQ 124
Query: 279 YFDLHSLPDGKISGKFPLKT-----------VIPGM--------------DHHHEIIANN 313
F +++ + K L+ +I G+ + + +
Sbjct: 125 VFAKYNVSRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 314 GPELIVKTTKNAPKGKVVTINLNNPC---EKNWKTLIPEDENRTLDVVAAVANNKLIVHY 370
+ KN + V L + NW + N L + + A + ++
Sbjct: 183 KIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 371 IQNVRSVMDLHDLNTGKRLHSFPL---------DLGQITHISGRRKY----NEVFYGFTS 417
++ L ++ K ++F L +S + T
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 418 ------FLQ---------PGTIYHCN------IPENITD------------QDDFKPTIF 444
L+ P + N I E+I D D I
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII- 359
Query: 445 RETIVPEFEPTLFQTKQVY-----FRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYG-GY 498
E+ + EP + ++++ F +P ++ +I+
Sbjct: 360 -ESSLNVLEPAEY--RKMFDRLSVFP--PSAHIPTILL------------SLIWFDVIKS 402
Query: 499 GVSVLPTFSISRCMFLRHFN-GIYAIPNIRGGGELGEDWHNAGRLLKKQNCFDDFQA--- 554
V V+ + + +IP+I L K +++
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSI--------------YLELKVKLENEYALHRS 448
Query: 555 -AAEYMINKKY-----TKPK-------YITIMGGSNGGLLVGACLNQR----PELYGAAL 597
Y I K + P +I G L +R ++
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI-------GHHLKNIEHPERMTLFRMVF---- 497
Query: 598 ILVGALDMLRF--NKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATL 655
LD RF K + + GS N L Y P + P + +
Sbjct: 498 -----LD-FRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKP-YICDNDPKYERLVNAI 548
Query: 656 ---VLTGDHDDRVPPLHSYKFIATLQ 678
+ + + L K+ L+
Sbjct: 549 LDFLPKIEEN-----LICSKYTDLLR 569
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 53.7 bits (129), Expect = 7e-08
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 36/153 (23%)
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV-GALDMLRFNKFTI 613
E+ IN P+ + ++G S GG L N +IL
Sbjct: 111 HKEWQIN-----PEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSF-------- 157
Query: 614 AYYSESEFGSPNNKTHFH----NLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669
FG P++ +HF+ N+ Y+ + + P T + D+ VP +
Sbjct: 158 ------TFGWPSDLSHFNFEIENISEYNISEKV-----TSSTPPTFIWHTADDEGVPIYN 206
Query: 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
S K+ L + + P + HG
Sbjct: 207 SLKYCDRLSKH-------QVPFEAHFFESGPHG 232
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 53.7 bits (129), Expect = 2e-07
Identities = 39/222 (17%), Positives = 69/222 (31%), Gaps = 22/222 (9%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGG-YGVSVLPTFSIS-RCMFLRHFNGIYAIPN 525
D +PM I+ P+++ G SV F +S + + + +
Sbjct: 476 DDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCD 535
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
RG G G + R D A M+ ++Y + + G GG L
Sbjct: 536 GRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYI 595
Query: 586 LNQRPELYG----AALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SP 638
L + E G L D K + +SE G + +Y
Sbjct: 596 LPAKGENQGQTFTCGSALSPITD----FKLYASAFSERYLGLHGL-----DNRAYEMTKV 646
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
H + + L++ D+++ H+ + I L
Sbjct: 647 AHRVS----ALEEQQFLIIHPTADEKIHFQHTAELITQLIRG 684
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 50.6 bits (121), Expect = 7e-07
Identities = 22/154 (14%), Positives = 46/154 (29%), Gaps = 25/154 (16%)
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
A+ + ++ + I + G S GG +V A N + I
Sbjct: 101 ASAHHVD-----CQRIILAGFSAGGHVV-ATYNGVATQPELRTRYHLDHYQGQHA-AIIL 153
Query: 615 YYSESEFGSPNNKTHFH-NLLS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPL 668
Y + + T N ++ ++ + V D+ VPP+
Sbjct: 154 GYPVIDLTAGFPTTSAARNQITTDARLWAAQRLV-----TPASKPAFVWQTATDESVPPI 208
Query: 669 HSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
+S K++ + + + + HG
Sbjct: 209 NSLKYVQAMLQH-------QVATAYHLFGSGIHG 235
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 51.3 bits (123), Expect = 1e-06
Identities = 40/203 (19%), Positives = 71/203 (34%), Gaps = 22/203 (10%)
Query: 485 NRRNPVIIYGYGGYGV-SVLPTFSISRCMFLRHF---NG-IYAIPNIRGGGELGEDWHNA 539
+R PV +Y YGG +V ++ + G + + RG G D+ A
Sbjct: 514 AKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRDFGGA 573
Query: 540 GRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALIL 599
+ D ++ + + P I + G SNGG + L + + Y +
Sbjct: 574 LYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAG 633
Query: 600 VGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSY---SPLHNIKVPPNNTQYPATLV 656
D ++Y+E P N Y L +I+ + L+
Sbjct: 634 APVTD----WGLYDSHYTERYMDLPAR-----NDAGYREARVLTHIEGLRSP-----LLL 679
Query: 657 LTGDHDDRVPPLHSYKFIATLQE 679
+ G DD V +S ++ LQ+
Sbjct: 680 IHGMADDNVLFTNSTSLMSALQK 702
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 50.1 bits (119), Expect = 2e-06
Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 62/268 (23%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIR 527
+G +P Y I + +I GG + + + +N + + ++
Sbjct: 143 EGELLPGYAIISEDKAQ----DTLIVVGGGDTSREDLFYMLGYSGWEHDYNVL--MVDLP 196
Query: 528 GGGE-LGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACL 586
G G+ + H D +AA +++ + I I G S GG +
Sbjct: 197 GQGKNPNQGLHFE----------VDARAAISAILDWYQAPTEKIAIAGFSGGGYFTAQAV 246
Query: 587 NQRPELYGAALI-----------------LVGALDMLRFNKFTIAYYSES---------- 619
+ + L +L++ + ++
Sbjct: 247 EKDKRIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAW 306
Query: 620 EFGSPNNKTHFHNLLSYSP---LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIAT 676
+FG + T + +L + + I VP +L L G +D S
Sbjct: 307 QFGQVDFITSVNEVLEQAQIVDYNKIDVP--------SLFLVGAGEDSELMRQSQVLYDN 358
Query: 677 LQEKIGSLPYQKNPLLLRVEQDAGHGQG 704
+++ + LR
Sbjct: 359 FKQR-------GIDVTLRKFSSESGADA 379
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 49.9 bits (118), Expect = 2e-06
Identities = 30/264 (11%), Positives = 63/264 (23%), Gaps = 46/264 (17%)
Query: 441 PTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGV 500
V + + ++ F + ++ + I G G
Sbjct: 69 KRQPSPVCVKTEKKEGYILEKWEFYPFPKSVSTFLVLKPEHLKGAVPGVLCIPGSGRTKE 128
Query: 501 SVLPTFSISRCMFLRHFNGIYAI-------------PNIRGGGELGEDWH---------- 537
++ I + + N ++ + GE +
Sbjct: 129 GLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNAAAGEASDLECYDKGWNYDYD 188
Query: 538 -------NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL--LVGACLNQ 588
G + D +M + Y + I I G S G +V L++
Sbjct: 189 VVSRFLLELGWSWLGYTSYLD-MQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDK 247
Query: 589 RPELYGAALILVGALDMLRFNKFTIAY-YSESEFGSPNNKTHFH-NLLSYSPLHNI--KV 644
A + L + + E+ PN+ H Y ++ +
Sbjct: 248 DI----YAFVYNDFLCQTQERAVVMTKPDKENRRPFPNSIRHLIPGYWRYFNFPDVVASL 303
Query: 645 PPNNTQYPATLVLTGDHDDRVPPL 668
P + G D +
Sbjct: 304 APR-----PIIFTEGGLDRDFRLV 322
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 9e-06
Identities = 106/618 (17%), Positives = 170/618 (27%), Gaps = 245/618 (39%)
Query: 7 PHPSEERAEKVEFTGPYPKVRK-----DETVEDDYHGMKIKDPYRWLEYPHCAETQI--F 59
P P+E A E T P V K VE G ++ + F
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG----------QFDQVLNLCLTEF 91
Query: 60 --NFMQNN----ISNPYCQNHTDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGL-- 111
+++ N ++ Q + ++L++ NY +A + + N L
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIK--NY--ITARIMAKRPFDKKSNSALFR 147
Query: 112 ---QNHSILYV----QRNLTGSTEVFLD--------PNKLSKD--GTTALKLYAFSDNGK 154
+ ++ L Q G+T+ + + + L D +A L
Sbjct: 148 AVGEGNAQLVAIFGGQ----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 155 HFAYCLSKSGSD---WNTLHIKDVDTGKDY----PEVLKNVKFPSISWTHDHKGFFYNQY 207
++ G + W L KDY P + P I Q
Sbjct: 204 DAEKVFTQ-GLNILEW--LENPSNTPDKDYLLSIP-----ISCPLIGVI---------Q- 245
Query: 208 CDINGTADGTETTAHMGQKIYY---HVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYL 264
AH Y +LG P + T + L
Sbjct: 246 ------------LAH-----YVVTAKLLGFT-----PGELRSYLKGA------TGHSQGL 277
Query: 265 LVSTSNNTQGSDLHYFD-------------LHSLPDGKISGKFPLKTVIPGMDHHHEIIA 311
+ + + S +F + +P ++ P + + +
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY------EAYPNTSLPPSI--LEDSLE 329
Query: 312 NN--GP---------------ELIVKTTKNAPKGKVVTINL-NNPCEKNWKTLIPEDENR 353
NN P + + KT + P GK V I+L N +
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--------------K 375
Query: 354 TLDVVAAVANNKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLDLGQ--ITHISGRR----- 406
L VV+ L+ LN R P L Q I S R+
Sbjct: 376 NL-VVSG---------------PPQSLYGLNLTLRKAKAPSGLDQSRIPF-SERKLKFSN 418
Query: 407 KYNEVFYGF-TSFLQPGT----------------------IYH-----------CNIPEN 432
++ V F + L P + +Y +I E
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 433 ITDQDDFKP------TIFRETIVPEFEP-------TLFQTKQVYFRSKDGT--RVPMYII 477
I D P T F+ T + +F P L R+KDGT RV I+
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTH------RNKDGTGVRV---IV 529
Query: 478 HRVGALRNRRNPVIIYGY 495
G L NP YG+
Sbjct: 530 --AGTLDI--NPDDDYGF 543
Score = 42.0 bits (98), Expect = 9e-04
Identities = 86/563 (15%), Positives = 145/563 (25%), Gaps = 227/563 (40%)
Query: 171 HIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQYCDIN-------GTADGTETTAHM 223
+ + + +VL T + DI+ D T
Sbjct: 70 SLVEPSKVGQFDQVLNLC------LTEFENCYLEGN--DIHALAAKLLQENDTTLVKTKE 121
Query: 224 GQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRYLLVSTSNNT---------QG 274
K Y P + N S L + QG
Sbjct: 122 LIKNYITARIMA---KRPFDKKSN--SA------------LFRAVGEGNAQLVAIFGGQG 164
Query: 275 SDLHYFD----LHSLPDGKISGKFPLKTVIPGMDHHHEIIANNGPEL--IVKTTKNAPKG 328
+ YF+ L+ + ++I + L +++TT +A K
Sbjct: 165 NTDDYFEELRDLYQTYHVLVG----------------DLIKFSAETLSELIRTTLDAEKV 208
Query: 329 KVVTINLNNPCEKNWKTLIPEDENRTLDV----VAAVANNKLI-----VHYIQNVRSVMD 379
+N+ W L E+ + T D ++ LI HY+ +
Sbjct: 209 FTQGLNI-----LEW--L--ENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAK---- 254
Query: 380 LHDLNTGKRLHSFPLDLGQITHISG-------------------RRKYNEV-FY-GFTSF 418
L G+ G H G RK V F+ G
Sbjct: 255 LLGFTPGELRSYLK---GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC- 310
Query: 419 LQ---PGTIYHCNIPENITDQDDFK-----PT-------IFRETI---VPEFEPTLFQTK 460
P + ++P +I +D + P+ + +E + V + L K
Sbjct: 311 -YEAYP----NTSLPPSIL-EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 461 QVYFRSKDGTRVPMYIIHRVGALRN-RRNPVIIYGYGG-----YGVSVL----------- 503
QV I +L N +N V+ G YG+++
Sbjct: 365 QV------------EI-----SLVNGAKNLVV----SGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 504 ----------PTFSISRCMFLR-----H---------------------FNGIY-AIP-- 524
FS FL H FN IP
Sbjct: 404 QSRIPFSERKLKFSNR---FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 525 NIRGGGELGEDWHNAGRLLKKQNCFD--DFQAAAEYMINKKYTKPKYITIMG-GSNGGLL 581
+ G +L + + ++ + K +I G G GL
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ-------FKATHILDFGPGGASGL- 512
Query: 582 VGACLNQRPELYGAALILVGALD 604
G ++ + G +I+ G LD
Sbjct: 513 -GVLTHRNKDGTGVRVIVAGTLD 534
Score = 36.2 bits (83), Expect = 0.049
Identities = 35/173 (20%), Positives = 50/173 (28%), Gaps = 63/173 (36%)
Query: 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 595
W+ A K F + + +IN P +TI G G + R E Y +
Sbjct: 1646 WNRADNHFKDTYGF----SILDIVINN----PVNLTIHFGGEKGKRI------R-ENY-S 1689
Query: 596 ALILVGALDMLRFNKFTIAYYSESE----FGSPN---NKTHFHNLLSYSPLHNIKVPPNN 648
A+I +D + +E F S + T F
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF------------------ 1731
Query: 649 TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH 701
TQ PA L L L+ K G +P + AGH
Sbjct: 1732 TQ-PA-LTLM-----------EKAAFEDLKSK-GLIP--ADATF------AGH 1762
Score = 34.6 bits (79), Expect = 0.13
Identities = 55/289 (19%), Positives = 90/289 (31%), Gaps = 102/289 (35%)
Query: 178 GKD-Y--PEVLKNVKFPSISWTHDH-KGFFYNQY----CDINGTADGTETTAHM----GQ 225
G D Y + ++V W + F + Y DI + T H G+
Sbjct: 1632 GMDLYKTSKAAQDV------W--NRADNHFKDTYGFSILDIV-INNPVNLTIHFGGEKGK 1682
Query: 226 KIY--YHVLGTEQDKDIPVVEFPNGRSLGLH-SEVTDCG-RYLLVSTSNNTQ-----GSD 276
+I Y + E D + + + H + T + LL +T TQ
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF-TQPALTLMEK 1741
Query: 277 LHYFDL--------------HSLPDGKIS------GKFPLKTVIP-----GM-------- 303
+ DL HSL G+ + +++++ GM
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSL--GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 304 DHH----HEIIANNGPELIVKTTK-----------NAPKGKVVTI-NLNNPCEKNWKTLI 347
D + +IA N P + + G +V I N N N + +
Sbjct: 1800 DELGRSNYGMIAIN-PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE---NQQYVA 1855
Query: 348 PEDENRTLDVVAAVAN-NKLIVHYIQNVRSVMDLHDLNTGKRLHSFPLD 395
D R LD V V N K +Q + D+ +L S L+
Sbjct: 1856 AGD-LRALDTVTNVLNFIK-----LQKI----DIIELQ-----KSLSLE 1889
Score = 31.9 bits (72), Expect = 0.91
Identities = 62/382 (16%), Positives = 98/382 (25%), Gaps = 155/382 (40%)
Query: 273 QGS-------DLHYFDLHSLPDGKISGKFPL-KTVIPGMDHHH---------EIIANNGP 315
QGS DL Y + V D+H +I+ NN
Sbjct: 1624 QGSQEQGMGMDL-Y------------KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPV 1670
Query: 316 ELIVKTTKNAPKGKVVTINLNNPCEKNWKTLIPEDENRTLDVVAAVANNKLIVHYIQNVR 375
L + KGK + N + + D + + N
Sbjct: 1671 NLTIHFG--GEKGKRIRENYSAMIFET-----IVDGKLKTEKIFKEINEHS--------T 1715
Query: 376 SVMDLHDLNTGKRLHSFPLDLGQITHISGRRKYNEVFYGFTSFLQPGTIYHCNIPENITD 435
S + G L T F QP
Sbjct: 1716 SYTFRSE--KGL------LSA-------------------TQFTQPA------------- 1735
Query: 436 QDDFKPTIFRETIVPEFEPTLFQTKQVYFRSKDGTRVPMYII-HRVG---ALRNRRNPVI 491
+ + E F+ +SK H +G AL
Sbjct: 1736 -------LT--LM----EKAAFE----DLKSKGLIPADATFAGHSLGEYAAL-------- 1770
Query: 492 IYGYGGYGVSVLPTFSISRCMFLRHFNGIY---AIPNIRGGGELGEDWH-----NAGRLL 543
V+ S+ +F R G+ A+P ELG + N GR+
Sbjct: 1771 -ASLAD----VMSIESLVEVVFYR---GMTMQVAVP----RDELGRSNYGMIAINPGRVA 1818
Query: 544 KKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELY---G--AAL- 597
+ Q A +Y++ + +G G L+ N + Y G AL
Sbjct: 1819 ASFS-----QEALQYVVER----------VGKRTGWLVEIVNYNVENQQYVAAGDLRALD 1863
Query: 598 ILVGALDMLRFNKFTIAYYSES 619
+ L+ ++ K I +S
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKS 1885
Score = 30.4 bits (68), Expect = 3.2
Identities = 28/207 (13%), Positives = 49/207 (23%), Gaps = 100/207 (48%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGA-CLNQRPELYGAALILVGALD---- 604
+ F + K IT++ +G C P IL +L+
Sbjct: 290 ESFFVSVR----------KAITVL------FFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 605 ----ML---------------RFNKFT-------IAYYSESEFGSPNNKTHFHNLLSYSP 638
ML + N I+ N + ++S P
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--------NGAKNL--VVSGPP 383
Query: 639 ---------LHNIKVPPNNTQY--PATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQ 687
L K P Q P +R S +F+ + P+
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIP--------FSERKLKF-SNRFLPV------ASPF- 427
Query: 688 KNPLLLRVEQDAGHGQGTPLMKSIEEM 714
H + L+ ++
Sbjct: 428 -------------H---SHLLVPASDL 438
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 46.5 bits (110), Expect = 2e-05
Identities = 26/231 (11%), Positives = 58/231 (25%), Gaps = 40/231 (17%)
Query: 468 DGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
+ ++ ++ + +PV+I G + F L + +
Sbjct: 176 EKGKITAHLHLTNTD---KPHPVVIVSAGLDSLQTDMWRLFR----DHLAKHDIAMLTVD 228
Query: 526 IRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGAC 585
+ G + + ++ QA + + Y + ++G GG +
Sbjct: 229 MPSVGY-------SSKYPLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRL 281
Query: 586 LNQRPELYGAALILVGALD-----------MLRFNKFTIAYYSESEFGSPNNKTHFHNLL 634
E A +IL + M + +A + +
Sbjct: 282 SFLEQEKIKACVILGAPIHDIFASPQKLQQMPKMYLDVLASRLGKSVVDIYSLSGQMAAW 341
Query: 635 SYSP-----LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEK 680
S KVP L ++ + D P +
Sbjct: 342 SLKVQGFLSSRKTKVP--------ILAMSLEGDPVSPYSDNQMVAFFSTYG 384
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 45.3 bits (107), Expect = 4e-05
Identities = 24/181 (13%), Positives = 49/181 (27%), Gaps = 29/181 (16%)
Query: 550 DDFQAAAEYMI-NKKYTKPKYITIMGGSNGGLLVGACLNQRPELYG------AALILV-G 601
F ++ + TK +T G G L+ L + + ALI + G
Sbjct: 133 TQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCG 192
Query: 602 ALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDH 661
D+ + + N+ S SP+ V+ +H
Sbjct: 193 VYDLRELSNLESVNPKNILGLNE------RNIESVSPMLWEYTDVTVWNSTKIYVVAAEH 246
Query: 662 DDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG--------QGTPLMKSIEE 713
D S + L++K + + H + + + +
Sbjct: 247 DSTTFIEQSRHYADVLRKK-------GYKASFTLFKGYDHFDIIEETAIDDSDVSRFLRN 299
Query: 714 M 714
+
Sbjct: 300 I 300
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 45.2 bits (107), Expect = 4e-05
Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 32/241 (13%)
Query: 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISR 510
E FQ +DG ++ + I G+ + L +
Sbjct: 15 ENLYFQGMATITLERDGLQLV-GTREEPF---GEIYDMAIIFHGFTANRNTSLLREIANS 70
Query: 511 CMFLRHFNGIYAI-PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKY 569
I ++ + G G+ + N N +D A Y+ + +
Sbjct: 71 L----RDENIASVRFDFNGHGDSDGKFENMTV----LNEIEDANAILNYVKTDPHVRN-- 120
Query: 570 ITIMGGSNGGLLVGACLNQRPELYGAALILVGALDM---LRFNKFTIAYYSESEFGSPNN 626
I ++G + GG++ P+L ++L A + Y+
Sbjct: 121 IYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLP 180
Query: 627 -------KTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQE 679
+ P ++ G D V P S K+ Q
Sbjct: 181 FKDLTLGGFYLRIAQQLPIYEVSA----QFTKP-VCLIHGTDDTVVSPNASKKYDQIYQN 235
Query: 680 K 680
Sbjct: 236 S 236
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 44.8 bits (106), Expect = 4e-05
Identities = 31/155 (20%), Positives = 49/155 (31%), Gaps = 24/155 (15%)
Query: 555 AAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIA 614
AAE+ I+ P+ IT G S GG +V + L + ML+ N +
Sbjct: 116 AAEWHID-----PQQITPAGFSVGGHIVALYNDYWATRVATELNVTP--AMLKPNNVVLG 168
Query: 615 YYSESEFGSPNNKTHFHNLLS-----YSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLH 669
Y S + + ++ N+ T + T D VP +
Sbjct: 169 YPVISPLLGFPKDDATLATWTPTPNELAADQHV-----NSDNQPTFIWTTADDPIVPATN 223
Query: 670 SYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQG 704
+ + L K P L V + HG
Sbjct: 224 TLAYATALATA-------KIPYELHVFKHGPHGLA 251
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 44.5 bits (105), Expect = 5e-05
Identities = 33/205 (16%), Positives = 59/205 (28%), Gaps = 37/205 (18%)
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRG-GGELGEDWHNAGRLLKKQNC 548
V+++ Y G + ++R + + +Y P G G D G
Sbjct: 26 VLLHAYTGSPNDMNF---MARALQRSGYG-VYV-PLFSGHGTVEPLDILTKGN------- 73
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRF 608
D + A + + K + + G S GG+ L P + + L
Sbjct: 74 PDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHH 133
Query: 609 NKFTIAYYSESEFGSPNNKTHFHNLLSYSP----------------LHNIKVPPNNTQYP 652
Y+E +L+Y P L+ +K P
Sbjct: 134 LVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQFATTVAADLNLVKQP------- 186
Query: 653 ATLVLTGDHDDRVPPLHSYKFIATL 677
T + D+ V +Y+ L
Sbjct: 187 -TFIGQAGQDELVDGRLAYQLRDAL 210
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 44.0 bits (104), Expect = 8e-05
Identities = 35/210 (16%), Positives = 62/210 (29%), Gaps = 42/210 (20%)
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGEDWHNAGRLLKKQNCF 549
++++G+ G S+ P ++ + + P ++G G ED F
Sbjct: 44 LLVHGFTGTPHSMRP---LAEAYAKAGYT-VCL-PRLKGHGTHYEDMERTT--------F 90
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALI--LVGALDMLR 607
D+ A+ E + + I + G S GG L P++ G I V +
Sbjct: 91 HDWVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAA 150
Query: 608 FNKFTIAYYSESEFGSPNNKTHFHNLLSYSP-------------------LHNIKVPPNN 648
+ + K L+Y L I P
Sbjct: 151 GMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTKAKLDRIVCP--- 207
Query: 649 TQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
L+ D D VPP ++ +
Sbjct: 208 -----ALIFVSDEDHVVPPGNADIIFQGIS 232
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 42.8 bits (100), Expect = 3e-04
Identities = 30/252 (11%), Positives = 63/252 (25%), Gaps = 54/252 (21%)
Query: 457 FQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFL 514
++ ++ F ++ N+ P I+ G GG + I+ +
Sbjct: 90 YRLEKWEFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLND 147
Query: 515 RHFNGIYAI-------------PNIRGGGE-----------------LGEDWHNAGRLLK 544
R+ + + GE + G
Sbjct: 148 RYKDPKLTQALNFVKEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYL 207
Query: 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGL--LVGACLNQRPELYGAALILVGA 602
+ D +M +K+ + I + G S G +V L+ A +
Sbjct: 208 GYASYLD-MQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSI----YAFVYNDF 262
Query: 603 L-DMLRFNKFTIAYYSESEFGSPNNKTHFH----NLLSYSPLHNIKVP-PNNTQYPATLV 656
L + PN+ H ++ + P P ++
Sbjct: 263 LCQTQERAEVMTMPDKNGRRPFPNSIRHLIPDFWKNFNFPDIVAALAPRP-------IIL 315
Query: 657 LTGDHDDRVPPL 668
G D + +
Sbjct: 316 TEGGLDRDLDLV 327
>3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii}
Length = 208
Score = 41.2 bits (96), Expect = 5e-04
Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 59/241 (24%)
Query: 476 IIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPNIRGGGELGED 535
+I R + +I + + +G ++ + L N RG G
Sbjct: 21 MITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVG----- 75
Query: 536 WHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGA 595
+ GR +D +A ++ + ++ G + G + A + ++
Sbjct: 76 -KSQGRYDNGVGEVEDLKAVLRWVEHHWSQDDIWLA---GFSFGAYISAKVAYDQKVAQ- 130
Query: 596 ALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATL 655
L+ + + ++ L + P L
Sbjct: 131 ---LISVAPPVFYE-------------------------GFASLTQMASP--------WL 154
Query: 656 VLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH---GQGTPLMKSIE 712
++ GD D+ VP F+ + P+ V A H G+ L + +
Sbjct: 155 IVQGDQDEVVPFEQVKAFVNQISS----------PVEFVVMSGASHFFHGRLIELRELLV 204
Query: 713 E 713
Sbjct: 205 R 205
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 41.5 bits (97), Expect = 6e-04
Identities = 30/258 (11%), Positives = 67/258 (25%), Gaps = 36/258 (13%)
Query: 458 QTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF 517
+T R +G + ++ + + N ++I G+ + ++
Sbjct: 6 KTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIAS--GFARRMDHFAGLAE-YLST-- 60
Query: 518 NGIYAI-PNIRG-GGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGG 575
NG + + G + ++ K I ++
Sbjct: 61 NGFHVFRYDSLHHVGLSSGSIDEFTM----TTGKNSLCTVYHWLQTKGTQN---IGLIAA 113
Query: 576 SNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNN--------- 626
S + ++ + + V L Y S PN+
Sbjct: 114 SLSARVAYEVISDLELSFLITAVGVVNLRDTLEKALGFDYLSLPIDELPNDLDFEGHKLG 173
Query: 627 -KTHFHNLL--SYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGS 683
+ + + L + NT P + T ++DD V Y +A +
Sbjct: 174 SEVFVRDCFEHHWDTLDSTLDKVANTSVP-LIAFTANNDDWVKQEEVYDMLAHI------ 226
Query: 684 LPYQKNPLLLRVEQDAGH 701
+ L + H
Sbjct: 227 ---RTGHCKLYSLLGSSH 241
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 40.3 bits (94), Expect = 0.001
Identities = 40/268 (14%), Positives = 73/268 (27%), Gaps = 69/268 (25%)
Query: 469 GTRVPM---YIIHRVGALRNRRNPVI-IYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIP 524
PM H+ A + ++G GG + L + +
Sbjct: 41 RKDTPMTKDSYFHKSRAGVAGAPLFVLLHGTGGDENQFFDFGA----RLLPQATILSPVG 96
Query: 525 NIRGGG------ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNG 578
++ G GE ++ L + DF A + +G SNG
Sbjct: 97 DVSEHGAARFFRRTGEGVYDMVDLERATGKMADFIKANREHYQ-----AGPVIGLGFSNG 151
Query: 579 GLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSP 638
++ L ++PEL+ AA+++ P P
Sbjct: 152 ANILANVLIEQPELFDAAVLM-----------------------HP-----------LIP 177
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
+ P L+ G+ D P + +L+ + G++
Sbjct: 178 FEPK-ISPAKPTRR-VLITAGERDPICPVQLTKALEESLKAQGGTVETV--------WHP 227
Query: 699 AGHGQGTPLMKSIEEMTDIYVFLMKSLG 726
GH E+ + FL G
Sbjct: 228 GGHEI------RSGEIDAVRGFLAAYGG 249
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 40.0 bits (93), Expect = 0.002
Identities = 18/170 (10%), Positives = 44/170 (25%), Gaps = 28/170 (16%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLN-----------------QRPEL 592
D + ++ +K I ++G S G + L ++
Sbjct: 98 YDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQI 155
Query: 593 YGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYP 652
+L G + Y + P+ + S + +
Sbjct: 156 VKRVFLLDGIYSLKELLIEYPEYDCFTRLAFPDGIQMYEE--EPSRVMPYVKKALSRFSI 213
Query: 653 ATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
++ D+ + + I+ LQ+ + L ++ H
Sbjct: 214 DMHLVHSYSDELLTLRQTNCLISCLQD-------YQLSFKLYLDDLGLHN 256
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 38.8 bits (91), Expect = 0.003
Identities = 24/183 (13%), Positives = 48/183 (26%), Gaps = 52/183 (28%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA------- 602
D+ K+ K IT++G S GG +V ++ ++ +
Sbjct: 68 DNVANFITNSEVTKHQKN--ITLIGYSMGGAIVLGVALKKLPNV-RKVVSLSGGARFDKL 124
Query: 603 ---LDMLRFNKFTIAYYSESEFGSPNN--KTHFHNLLSYSP------------------L 639
++ Y G +N + L P L
Sbjct: 125 DKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDIMINDLIACKLIDLVDNL 184
Query: 640 HNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDA 699
NI +P + + +S +++++ +N L E
Sbjct: 185 KNIDIP--------VKAIVAKDELLTLVEYSEI----IKKEV------ENSELKIFE-TG 225
Query: 700 GHG 702
H
Sbjct: 226 KHF 228
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 38.8 bits (89), Expect = 0.005
Identities = 21/167 (12%), Positives = 46/167 (27%), Gaps = 13/167 (7%)
Query: 449 VPEFEPTLFQTKQVYFRSKDGTRVPM----YIIHRVGALRNRRNPVIIYGYGGYGVSVLP 504
PE + + + + P ++ G + P++ +G+ +
Sbjct: 36 QPEQAKCNVRVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQE 95
Query: 505 TFSISR-----CMFLRHFNG---IYAIPNIRGGGELGEDWHN-AGRLLKKQNCFDDFQAA 555
R + + + G G+ +H + D +AA
Sbjct: 96 QAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAA 155
Query: 556 AEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602
+ + K + + G S GG A + LV +
Sbjct: 156 RSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVAS 202
>3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural
genomics, joint CE structural genomics, JCSG, protein
structure initiative; 1.75A {Mesorhizobium loti} SCOP:
c.69.1.14
Length = 223
Score = 37.9 bits (88), Expect = 0.006
Identities = 31/261 (11%), Positives = 66/261 (25%), Gaps = 66/261 (25%)
Query: 477 IHRVGALRNRRNPVII--YGYGGYGVSVLPTFSISRCMFLRHFNGI-YAIPNIRGGG--- 530
+R+ + +G G +++P ++R + + G
Sbjct: 19 PYRLLGAGKESRECLFLLHGSGVDETTLVP---LAR-RIAPTATLVAARGRIPQEDGFRW 74
Query: 531 --ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQ 588
+ +L + F F A + + T +G SNG LV + +
Sbjct: 75 FERIDPTRFEQKSILAETAAFAAFTNEA---AKRHGLNLDHATFLGYSNGANLVSSLMLL 131
Query: 589 RPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNN 648
P + A LL P+ + +
Sbjct: 132 HPGIVRLAA-----------------------------------LLRPMPVLDHVPATDL 156
Query: 649 TQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHGQGTPLM 708
TL++ G D+ P + L + + +GH
Sbjct: 157 AGIR-TLIIAGAADETYGP-FVPALVTLLSRHGAEVDAR--------IIPSGHDI----- 201
Query: 709 KSIEEMTDIYVFLMKSLGLKY 729
+ + +L + +
Sbjct: 202 -GDPDAAIVRQWLAGPIAIAQ 221
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 38.0 bits (88), Expect = 0.007
Identities = 24/194 (12%), Positives = 50/194 (25%), Gaps = 30/194 (15%)
Query: 489 PVIIYGYGGYGVSVLPTFSISRCMFL-RHF--NGI-YAIPNIRGGGELGEDWHNAGRLLK 544
+ ++ +GGY ++ F S L G A+P+ L + +
Sbjct: 64 GLFVFVHGGYWMA----FDKSSWSHLAVGALSKGWAVAMPSYE----LCPEVRISE---- 111
Query: 545 KQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALD 604
A + I + G S GG LV L+ + +
Sbjct: 112 ---ITQQISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVP 165
Query: 605 MLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDR 664
+ + + + K ++ SP+ + V G +
Sbjct: 166 I---SPLSDLRPLLRTSMNEKFKMDADAAIAESPVE--MQNRYD---AKVTVWVGGAERP 217
Query: 665 VPPLHSYKFIATLQ 678
+ +
Sbjct: 218 AFLDQAIWLVEAWD 231
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 36.4 bits (84), Expect = 0.018
Identities = 14/81 (17%), Positives = 24/81 (29%)
Query: 524 PNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVG 583
++ E D A +++ + T+ + G S GG
Sbjct: 70 IDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAAL 129
Query: 584 ACLNQRPELYGAALILVGALD 604
+RPE A + G D
Sbjct: 130 VAAAERPETVQAVVSRGGRPD 150
>3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase,
copper homeostasis, malic acid; 1.88A {Lactococcus
lactis subsp}
Length = 209
Score = 36.3 bits (84), Expect = 0.021
Identities = 31/262 (11%), Positives = 69/262 (26%), Gaps = 69/262 (26%)
Query: 474 MYIIHRVGALRNRRNPVI-IYGYGGYGVS-------VLPTFSISRCMFLR---HFNGIYA 522
+ + G R P++ ++ GG + P+ I + +R + G+
Sbjct: 5 TDYVFKAG--RKDLAPLLLLHSTGGDEHQLVEIAEMIAPSHPI---LSIRGRINEQGVNR 59
Query: 523 IPNIRGGGELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLV 582
+RG G ++ + L ++ + D + K + +G SNG +
Sbjct: 60 YFKLRGLGGFTKENFDLESLDEETDWLTDEVSLL---AEKHDLDVHKMIAIGYSNGANVA 116
Query: 583 GACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYSPLHNI 642
+ + + L +
Sbjct: 117 LNMFLRGKINFDKII-----------------------------------AFHGMQLEDF 141
Query: 643 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
+ + +D VP + L++ L E GH
Sbjct: 142 EQTVQLDDKH-VFLSYAPNDMIVPQKNFGDLKGDLEDSGCQLEIY--------ESSLGHQ 192
Query: 703 QGTPLMKSIEEMTDIYVFLMKS 724
+ EE+ +L ++
Sbjct: 193 L------TQEEVLAAKKWLTET 208
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 34.9 bits (81), Expect = 0.099
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFF 203
N K+ +GS NTLH+ + P+ + +P + T + +F
Sbjct: 212 VEYKNIKYIV-----TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 262
Score = 31.4 bits (72), Expect = 1.1
Identities = 4/32 (12%), Positives = 10/32 (31%), Gaps = 6/32 (18%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ + +G+D + + D K
Sbjct: 128 LQFE-DNYVI-----TGADDKMIRVYDSINKK 153
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 34.0 bits (78), Expect = 0.12
Identities = 30/214 (14%), Positives = 56/214 (26%), Gaps = 49/214 (22%)
Query: 490 VIIYGYGGYGVSVLPTFSISRCMFLRHFN----GIYAIPNIRGGGELGEDWHNAGRLLKK 545
++++G+ G V R +A P +G G E+ L
Sbjct: 20 LLLHGFTGNSADVRM--------LGRFLESKGYTCHA-PIYKGHGVPPEE-------LVH 63
Query: 546 QNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRP----ELYGAALILVG 601
D +Q K + I + G S GG+ P A + +
Sbjct: 64 TGPDDWWQDVMNGYEFLKNKGYEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKS 123
Query: 602 -----------ALDMLRFNKFTIAYYSESEFGSPNNKTH----FHNLLSYSP--LHNIKV 644
A + + + + L++ L I
Sbjct: 124 EETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLKALQELIADVRDHLDLIYA 183
Query: 645 PPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQ 678
P T V+ HD+ + P + ++
Sbjct: 184 P--------TFVVQARHDEMINPDSANIIYNEIE 209
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 34.2 bits (79), Expect = 0.12
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L ++ P L++ G+ D VP H+ +
Sbjct: 192 LPRVQCP--------ALIVHGEKDPLVPRFHADFIHKHV 222
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 34.6 bits (80), Expect = 0.13
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
S +G+ +A +++ D+ L
Sbjct: 337 RISQDGQKYA-----VAFMDGQVNVYDLKKLNSKSRSLY 370
Score = 29.9 bits (68), Expect = 2.9
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
++ +G H S N + +V +G
Sbjct: 156 KWNKDGTHII-----SMDVENVTILWNVISGT 182
Score = 29.5 bits (67), Expect = 4.4
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 7/44 (15%)
Query: 136 LSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S DG+ + + + D+ K G + + +
Sbjct: 202 HSGDGSLGVDV-EWVDDDKFVI-----PGPK-GAIFVYQITEKT 238
Score = 29.2 bits (66), Expect = 6.0
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F+D K S SD TL I G
Sbjct: 254 EFNDTNKLLL-----SASDDGTLRIWHGGNGN 280
>3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.10A {Escherichia coli SE11}
Length = 268
Score = 34.1 bits (79), Expect = 0.13
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 21/64 (32%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 697
I+ P ++ D VP S L + S V
Sbjct: 196 ADRIRCP--------VQIICASDDLLVPTACSS----ELHAALPDS--------QKMVMP 235
Query: 698 DAGH 701
GH
Sbjct: 236 YGGH 239
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural
genomics, PSI-2, protein structure initiative; 2.60A
{Vibrio parahaemolyticus rimd 2210633}
Length = 396
Score = 34.2 bits (77), Expect = 0.14
Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 19/166 (11%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHDHKGFFYNQY 207
+ +G AY G ++ + +T ++ EV+ + D +
Sbjct: 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-EEVMVMPPCSHLMSNFDGSLMVGDGC 302
Query: 208 CDINGTADGTETTAHMGQKIYYHVLGTEQDKDI------PVVEFPNGRSLGLHSEVTDCG 261
AD +Y + + + V + + H T
Sbjct: 303 DAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPND 362
Query: 262 RYLLVSTSNNTQGSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHH 307
++ TS+ ++ D +P+ + HHH
Sbjct: 363 DG-VLFTSDFEGVPAIYIAD---VPESYKH--------LEHHHHHH 396
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 33.8 bits (78), Expect = 0.16
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 24/65 (36%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI--GSLPYQKNPLLLRVE 696
IKVP LV++G HD P L + I VE
Sbjct: 202 APGIKVP--------ALVISGTHDLAATPAQGR----ELAQAIAGARY----------VE 239
Query: 697 QDAGH 701
DA H
Sbjct: 240 LDASH 244
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 33.3 bits (76), Expect = 0.19
Identities = 32/266 (12%), Positives = 63/266 (23%), Gaps = 75/266 (28%)
Query: 470 TRVPMYIIHRVGALRNRRNPVIIY--GYGGYGVSVLPTFSISRCMFLRHF--NGIYAIPN 525
+ M + + G + PV++ G GG + +LP
Sbjct: 22 SNAMMKHVFQKGK--DTSKPVLLLLHGTGGNELDLLP--------LAEIVDSEASVLSVR 71
Query: 526 --IRGGG------ELGEDWHNAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSN 577
+ G L E + L+ + ++F A + I +G SN
Sbjct: 72 GNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDEA---AKEYKFDRNNIVAIGYSN 128
Query: 578 GGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSESEFGSPNNKTHFHNLLSYS 637
G + + L A+ L
Sbjct: 129 GANIAASLLFHYENALKGAV-----------------------------------LHHPM 153
Query: 638 PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQ 697
N + G +D S + L+ ++ +
Sbjct: 154 VPRRGMQLANLAGKS-VFIAAGTNDPICSSAESEELKVLLENANANVTMH--------WE 204
Query: 698 DAGHGQGTPLMKSIEEMTDIYVFLMK 723
+ GH ++ E+ + K
Sbjct: 205 NRGHQL------TMGEVEKAKEWYDK 224
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 33.7 bits (77), Expect = 0.23
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 21/155 (13%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPS-ISWTHDHKGFFY-- 204
S +GK A+ + + + + D++T + + K + W D +
Sbjct: 65 RISPDGKKIAFMRANEEKKVSEIWVADLETLS--SKKILEAKNIRSLEWNEDSRKLLIVG 122
Query: 205 ---------NQYCDINGTADGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHS 255
D+ D + + TE ++ I E P S
Sbjct: 123 FKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW--IFDTESEEVIEEFEKPR-----FSS 175
Query: 256 EVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290
+ + ++ ++D++ DGK
Sbjct: 176 GIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE 210
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 33.6 bits (77), Expect = 0.23
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
N FA S + + V+ +
Sbjct: 118 TMIPNFDAFA-----VSSKDGQIIVLKVNHYQ 144
Score = 28.6 bits (64), Expect = 7.9
Identities = 16/164 (9%), Positives = 41/164 (25%), Gaps = 40/164 (24%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFPSISWTHD---HKGFFY 204
+ G+ + I D+ ++++ F + + +
Sbjct: 221 CIDEECCVLI-----LGTTRGIIDIWDIRFNV----LIRSWSFGDHAPITHVEVCQFYGK 271
Query: 205 NQYCDINGTADGT------ETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSL------- 251
N + G++ G + ++ P + L
Sbjct: 272 NSVIVVGGSSKTFLTIWNFVK----GHCQ--YAFINSDEQPSMEHFLPIEKGLEELNFCG 325
Query: 252 -----GLHSEVTDCGRYLLVSTSNNTQGSDLHYFDLHSLPDGKI 290
L + + LL + ++ + F L+ L K
Sbjct: 326 IRSLNALSTISVSNDKILLTDEATSS----IVMFSLNELSSSKA 365
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 33.4 bits (77), Expect = 0.27
Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 3/32 (9%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
++ G+ N D+G
Sbjct: 123 SWDFEGRRLCVV---GEGRDNFGVFISWDSGN 151
Score = 30.3 bits (69), Expect = 2.5
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 16/62 (25%)
Query: 148 AFS--DNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFP---------SISWT 196
FS ++ SG + + + K+ V NVK ISW
Sbjct: 71 KFSPIKGSQYLC-----SGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 125
Query: 197 HD 198
+
Sbjct: 126 FE 127
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 33.5 bits (77), Expect = 0.27
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 147 YAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
Y + + SG NT+ I D +T +
Sbjct: 137 YCLQYDDQKIV-----SGLRDNTIKIWDKNTLE 164
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 32.6 bits (75), Expect = 0.33
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 8/32 (25%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670
L I+ P TLV+ G +D H
Sbjct: 204 LARIERP--------TLVIAGAYDTVTAASHG 227
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 33.0 bits (76), Expect = 0.33
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 146 LYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ G SGSD NTL + TGK
Sbjct: 122 ITCLQFCGNRIV-----SGSDDNTLKVWSAVTGK 150
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 32.6 bits (75), Expect = 0.34
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+ I VP TLV+ GD D VP + K A L
Sbjct: 207 MAKIDVP--------TLVIHGDGDQIVPFETTGKVAAEL 237
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 32.8 bits (75), Expect = 0.35
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
L +P TL++ GD D VP +S K E I N + ++
Sbjct: 217 LEKFNIP--------TLIIHGDSDATVPFEYSGKLTH---EAI------PNSKVALIK-G 258
Query: 699 AGHG 702
HG
Sbjct: 259 GPHG 262
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 32.7 bits (75), Expect = 0.35
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L + +VP L+L G+H+ P + ++
Sbjct: 242 LRSARVP--------ILLLLGEHEVIYDPHSALHRASSF 272
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 32.6 bits (75), Expect = 0.39
Identities = 5/32 (15%), Positives = 6/32 (18%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
AF A + D D
Sbjct: 280 AFHPVHGTLA-----TVGSDGRFSFWDKDART 306
Score = 30.3 bits (69), Expect = 2.1
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F+ NG FA S ++ + +
Sbjct: 322 CFNHNGNIFA-----YASSYDWSKGHEFYNPQ 348
Score = 30.3 bits (69), Expect = 2.1
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+SD+G + S T + D+ + +
Sbjct: 93 CWSDDGSKVF-----TASCDKTAKMWDLSSNQ 119
Score = 28.8 bits (65), Expect = 6.8
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F +G + S + N +KD++
Sbjct: 9 GFGTSGTS----MFGSATTDNHNPMKDIEVTS 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.40
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 76 DREAIK--EQLLRMANYEKYSAP 96
+++A+K + L++ Y SAP
Sbjct: 18 EKQALKKLQASLKL--YADDSAP 38
Score = 29.5 bits (65), Expect = 2.4
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 5/23 (21%)
Query: 135 KLSKDGTTALKLYAFSDNGKHFA 157
KL +LKLYA D+ A
Sbjct: 24 KL----QASLKLYA-DDSAPALA 41
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 32.8 bits (75), Expect = 0.40
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+F+D+G+ S L DV T +
Sbjct: 298 SFNDSGETLC-----SAGWDGKLRFWDVKTKE 324
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 33.3 bits (76), Expect = 0.40
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F +N + + L + TG+
Sbjct: 929 VFQENETMVL-----AVDNIRGLQLIAGKTGQ 955
Score = 32.9 bits (75), Expect = 0.50
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS +G+ A S TL + +TG+
Sbjct: 622 CFSQDGQRIA-----SCGADKTLQVFKAETGE 648
Score = 32.1 bits (73), Expect = 0.87
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F+ +GK S S+ + + + + TG
Sbjct: 1010 QFTADGKTLI-----SSSEDSVIQVWNWQTGD 1036
Score = 31.7 bits (72), Expect = 1.2
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A S + F+ S S T I D
Sbjct: 1092 AISSDATKFS-----STSADKTAKIWSFDLLS 1118
Score = 31.3 bits (71), Expect = 1.5
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S + ++ A G + + I ++ +
Sbjct: 968 CLSPHLEYVA-----FGDEDGAIKIIELPNNR 994
Score = 30.2 bits (68), Expect = 3.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS + + A S S TL + DV +
Sbjct: 750 RFSPDDELLA-----SCSADGTLRLWDVRSAN 776
Score = 30.2 bits (68), Expect = 3.3
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS +G F + SD T+ + +
Sbjct: 889 MFSPDGSSFL-----TASDDQTIRVWETKKVC 915
Score = 29.8 bits (67), Expect = 4.1
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS + + ++D+
Sbjct: 847 DFSPYDHLAV-----IALSQYCVELWNIDSRL 873
Score = 29.4 bits (66), Expect = 4.9
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
AFS + + A + S + I D TGK
Sbjct: 664 AFSSDDSYIA-----TCSADKKVKIWDSATGK 690
Score = 29.0 bits (65), Expect = 7.8
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
AFS +G A +G D + I +V G+
Sbjct: 1134 AFSLDGILLA-----TGDDNGEIRIWNVSDGQ 1160
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 32.6 bits (75), Expect = 0.41
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 123 LTGSTEVFLDPNKLSKDGTTALKLY----AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 178
L+ + DP L+ + + LY FS +GK A +G++ + I D++
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA-----TGAEDRLIRIWDIENR 155
Query: 179 K 179
K
Sbjct: 156 K 156
Score = 28.7 bits (65), Expect = 7.9
Identities = 6/38 (15%), Positives = 9/38 (23%), Gaps = 11/38 (28%)
Query: 148 AFSD------NGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A ++ FA +GS I
Sbjct: 359 AVANGSSLGPEYNVFA-----TGSGDCKARIWKYKKIA 391
Score = 28.3 bits (64), Expect = 9.8
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ +G SGS T+ I D+ TG+
Sbjct: 172 DYFPSGDKLV-----SGSGDRTVRIWDLRTGQ 198
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 32.5 bits (75), Expect = 0.47
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 18/71 (25%)
Query: 469 GTRVPMYIIHRVGALRN-----RRNPVIIYG----YGGYGVSVLPTFSISRCMFLRHFNG 519
R PM + + GA ++ + V ++G Y YG +V+ +R H G
Sbjct: 276 SKRHPMTMHCKTGATKDGRLQAVQ--VEMFGDTGAYASYGPAVI-----TRATV--HCMG 326
Query: 520 IYAIPNIRGGG 530
Y +PN+R
Sbjct: 327 PYVVPNVRVDA 337
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 32.1 bits (73), Expect = 0.48
Identities = 22/204 (10%), Positives = 46/204 (22%), Gaps = 44/204 (21%)
Query: 549 FDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL-VGACLNQRPE----LYGAALIL---- 599
+D A+ + + + I G S+G L + ++ + YG + I
Sbjct: 79 IEDVYASFDAI--QSQYSNCPIFTFGRSSGAYLSLLIARDRDIDGVIDFYGYSRINTEPF 136
Query: 600 ------VGALDMLRFNKFTIAYYSESEFGSPNNKTHF---------HNLLSYSPLHNIKV 644
+ S + F ++ + +
Sbjct: 137 KTTNSYYAKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTD 196
Query: 645 PP------NNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
P + + D VP S + +
Sbjct: 197 SKYNIAPDELKTLPPVFIAHCNGDYDVPVEESEHIMNHV-----------PHSTFERVNK 245
Query: 699 AGHG-QGTPLMKSIEEMTDIYVFL 721
H P ++I + FL
Sbjct: 246 NEHDFDRRPNDEAITIYRKVVDFL 269
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 32.0 bits (73), Expect = 0.56
Identities = 12/65 (18%), Positives = 16/65 (24%), Gaps = 21/65 (32%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 697
NI P LV+ D PP + + +
Sbjct: 227 YRNIAAP--------VLVIGFADDVVTPPYLG----REVADALPNG--------RYLQIP 266
Query: 698 DAGHG 702
DAGH
Sbjct: 267 DAGHL 271
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 31.8 bits (73), Expect = 0.59
Identities = 13/65 (20%), Positives = 17/65 (26%), Gaps = 21/65 (32%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 697
L N+ +P L L G D VP L + S +
Sbjct: 192 LQNVSMP--------FLRLYGYLDGLVPRKVV----PMLDKLWPHS--------ESYIFA 231
Query: 698 DAGHG 702
A H
Sbjct: 232 KAAHA 236
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 31.9 bits (73), Expect = 0.60
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
L +P TLV+ GD D VP + + A + I N L E
Sbjct: 208 LKKFDIP--------TLVVHGDDDQVVPIDATGRKSA---QII------PNAELKVYE-G 249
Query: 699 AGHG 702
+ HG
Sbjct: 250 SSHG 253
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 32.0 bits (73), Expect = 0.60
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
ERAE V+F PY K K++ + +
Sbjct: 129 PERAEAVDFADPYMKVALGVVSPKNKPITDMAQLKDQTL 167
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 32.2 bits (74), Expect = 0.61
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS + +F + S + DV T +
Sbjct: 225 QFSPDLTYFI-----TSSRDTNSFLVDVSTLQ 251
Score = 31.4 bits (72), Expect = 1.2
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS G +F L + +++I +++
Sbjct: 122 EFSPCGNYFLAILDNVMKNPGSINIYEIERDS 153
Score = 31.0 bits (71), Expect = 1.4
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A S G +A SG + + + +
Sbjct: 322 AISPQGTSYA-----SGGEDGFIRLHHFEKSY 348
Score = 29.5 bits (67), Expect = 4.1
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
K+ +GS ++ + DV G+
Sbjct: 81 DVDCFTKYCV-----TGSADYSIKLWDVSNGQ 107
Score = 28.7 bits (65), Expect = 8.2
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
+S GK+ +G + DV +Y + +
Sbjct: 182 GWSTKGKYII-----AGHKDGKISKYDVSNNYEYVDSID 215
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 31.9 bits (73), Expect = 0.66
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670
+I +P TLV+ G +
Sbjct: 202 FASISIP--------TLVMDGGASPAWIRHTA 225
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 32.2 bits (74), Expect = 0.69
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 148 AFSDNGKHFAYCLSKSGSDW--NTLHIKDVDTGK 179
++ K A + + H+ DTG
Sbjct: 110 SWDSESKRIA-----AVGEGRERFGHVFLFDTGT 138
Score = 31.4 bits (72), Expect = 1.2
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 3/32 (9%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ G YC +G+ T+ + + +
Sbjct: 25 GNTPAGDKIQYC---NGTSVYTVPVGSLTDTE 53
Score = 31.0 bits (71), Expect = 1.6
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKN 187
++S + A +GS N++ + +++ D+P ++K
Sbjct: 543 SWSPDNVRLA-----TGSLDNSVIVWNMNKPSDHPIIIKG 577
Score = 30.6 bits (70), Expect = 2.2
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+S +G A S S T+ I +V T K
Sbjct: 246 TWSPDGTKIA-----SASADKTIKIWNVATLK 272
Score = 30.6 bits (70), Expect = 2.3
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A S++ + A G + +H+ +
Sbjct: 455 ALSNDKQFVA-----VGGQDSKVHVYKLSGAS 481
Score = 30.2 bits (69), Expect = 2.5
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ S S ++ + + G
Sbjct: 289 GIIWTKQALV-----SISANGFINFVNPELGS 315
Score = 29.5 bits (67), Expect = 4.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
++ +G FA S T+ + + G
Sbjct: 197 RYNPDGSLFA-----STGGDGTIVLYNGVDGT 223
Score = 29.5 bits (67), Expect = 4.3
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
AFS+NG + + V
Sbjct: 498 AFSNNGAFLV-----ATDQSRKVIPYSVANNF 524
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 32.2 bits (74), Expect = 0.70
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+S +G + G + I DV++
Sbjct: 141 KWSHDGSFLS-----VGLGNGLVDIYDVESQT 167
Score = 30.7 bits (70), Expect = 2.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A+ +G A SG + N + I D +
Sbjct: 224 AWRSDGLQLA-----SGGNDNVVQIWDARSSI 250
Score = 28.7 bits (65), Expect = 7.7
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+S + K S G N L I +
Sbjct: 310 IWSPHSKEIM---STHGFPDNNLSIWSYSSSG 338
>3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, alpha-beta hydrolase fold,
hydrolase; 2.00A {Oleispira antarctica}
Length = 282
Score = 31.5 bits (72), Expect = 0.86
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 19/64 (29%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
L +I P L+ D P + E I N L ++
Sbjct: 214 LEDISTP--------ALIFQSAKDSLASPEVG----QYMAENI------PNSQLELIQ-A 254
Query: 699 AGHG 702
GH
Sbjct: 255 EGHC 258
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 31.5 bits (72), Expect = 0.87
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+ + TL++ G D VP S + +
Sbjct: 209 IKTLPNE--------TLIIHGREDQVVPLSSSLRLGELI 239
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 31.8 bits (73), Expect = 0.90
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F+ +G H + N + + + G+
Sbjct: 252 CFTSDGLHLL-----TVGTDNRMRLWNSSNGE 278
Score = 28.8 bits (65), Expect = 7.1
Identities = 5/32 (15%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F N + SGS + +
Sbjct: 341 VFQSNFQELY-----SGSRDCNILAWVPSLYE 367
>1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase,
polyketide, tailoring enzyme, structural proteomics in
europe, spine; HET: AKT 1PE; 1.45A {Streptomyces
purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A*
Length = 298
Score = 31.4 bits (71), Expect = 0.91
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSY 671
L + VP TLV+ +HD P H
Sbjct: 233 LREVTVP--------TLVIQAEHDPIAPAPHGK 257
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 31.5 bits (72), Expect = 0.95
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L + LV G D VP S L
Sbjct: 221 LGRLPHD--------VLVFHGRQDRIVPLDTSLYLTKHL 251
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 31.3 bits (72), Expect = 1.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A+S +G+ +G N + + V G
Sbjct: 313 AWSADGQTLF-----AGYTDNLVRVWQVTIGT 339
Score = 29.4 bits (67), Expect = 4.2
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S +G A SG + D++ GK
Sbjct: 222 TVSPDGSLCA-----SGGKDGQAMLWDLNEGK 248
Score = 29.4 bits (67), Expect = 4.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S +G+ SGS TL + D+ TG
Sbjct: 93 VISSDGQFAL-----SGSWDGTLRLWDLTTGT 119
>2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond
hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia
xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A*
3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A
Length = 286
Score = 31.2 bits (71), Expect = 1.0
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L IK T + G D VP H K + +
Sbjct: 222 LGEIKAK--------TFITWGRDDRFVPLDHGLKLLWNI 252
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12
Length = 273
Score = 31.2 bits (71), Expect = 1.0
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L I VP TLV+ GD D VP S A L
Sbjct: 209 LKKIDVP--------TLVVHGDADQVVPIEASGIASAAL 239
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC
transport, cysteine uptake; 2.00A {Campylobacter jejuni}
SCOP: c.94.1.1
Length = 292
Score = 31.2 bits (71), Expect = 1.1
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
+RAE+V+F PY K V KD + +D +
Sbjct: 118 PQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTL 156
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta
barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans}
SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Length = 907
Score = 31.5 bits (72), Expect = 1.2
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 18/71 (25%)
Query: 469 GTRVPMYIIHRVGALRN-----RRNPVIIYG----YGGYGVSVLPTFSISRCMFLRHFNG 519
G R P + R A R Y +G + R +
Sbjct: 460 GKRSPFWTTMRYAADRQGKILAME--TDWSVDHGPYSEFGDLLT-----LRGAQ--YIGA 510
Query: 520 IYAIPNIRGGG 530
Y I NIRG G
Sbjct: 511 GYGIANIRGTG 521
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 31.4 bits (72), Expect = 1.2
Identities = 1/32 (3%), Positives = 2/32 (6%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A +
Sbjct: 256 AAIPAQAGAD-----WTAAPAPAAGGWDTAAA 282
Score = 31.4 bits (72), Expect = 1.2
Identities = 0/32 (0%), Positives = 0/32 (0%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
Sbjct: 351 ----- 377
Score = 31.0 bits (71), Expect = 1.5
Identities = 0/32 (0%), Positives = 0/32 (0%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
Sbjct: 305 ----- 331
Score = 29.5 bits (67), Expect = 4.0
Identities = 0/33 (0%), Positives = 2/33 (6%), Gaps = 5/33 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 180
+ +
Sbjct: 115 QLQTSFSEPR-----LLILTDPRTDHQPIKESA 142
Score = 29.5 bits (67), Expect = 4.6
Identities = 1/32 (3%), Positives = 5/32 (15%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ + + +K
Sbjct: 73 ENPQDIIVQS-----ARPYGQRAVLKFAQYTG 99
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 31.1 bits (71), Expect = 1.2
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
+ GK + + I DV + + + LK
Sbjct: 333 SVLSGGKAKCSQFC-TTGMDGGMSIWDVRSLESALKDLK 370
Score = 31.1 bits (71), Expect = 1.3
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 12/57 (21%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFP------SISWTHD 198
++ N K FA GS + I + D+ V K++K P S+ W +
Sbjct: 103 RWAPNEKKFA-----VGSGSRVISICYFEQENDWW-VCKHIKKPIRSTVLSLDWHPN 153
Score = 30.7 bits (70), Expect = 1.9
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A++ + A + + +HI + K
Sbjct: 15 AWNKDRTQIA-----ICPNNHEVHIYEKSGNK 41
Score = 28.4 bits (64), Expect = 8.7
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 14/58 (24%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVK-----FPSISWTHDHK 200
FS NG A S +T+ + D D + + ++++ +
Sbjct: 209 CFSANGSRVA-----WVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITESS 257
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase,
phosphoprotein, transferase; 2.40A {Geobacter
sulfurreducens}
Length = 234
Score = 30.7 bits (70), Expect = 1.3
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 10 SEERAEKVEFTGPYPK------VRKDETV---EDDYHGMKI 41
SE+RA +++FT P+ R+D +D G K+
Sbjct: 80 SEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGRKV 120
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 31.2 bits (71), Expect = 1.3
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
A S ++ A +G LHI +++ + +K
Sbjct: 75 ATSLQQRYLA-----TGDFGGNLHIWNLEAPEMPVYSVK 108
Score = 29.6 bits (67), Expect = 4.1
Identities = 4/32 (12%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A++ + +G D + + D+
Sbjct: 175 AYNQEERVVC-----AGYDNGDIKLFDLRNMA 201
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 31.1 bits (71), Expect = 1.3
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L I+ P LV+ GD D VP +S A L
Sbjct: 212 LKGIQQP--------VLVMHGDDDQIVPYENSGVLSAKL 242
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 30.9 bits (71), Expect = 1.4
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
AFS + ++ A +G+ ++I V++GK
Sbjct: 129 AFSPDSQYLA-----TGTHVGKVNIFGVESGK 155
Score = 30.5 bits (70), Expect = 2.0
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S A S S + + D++ GK
Sbjct: 87 DISHTLPIAA-----SSSLDAHIRLWDLENGK 113
Score = 29.7 bits (68), Expect = 3.3
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
AF + HF S S ++ + DV T
Sbjct: 255 AFCPDDTHFV-----SSSSDKSVKVWDVGTRT 281
Score = 29.4 bits (67), Expect = 4.0
Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A+ N K + + +GS + + + +
Sbjct: 39 AWGTNKKENSETVV-TGSLDDLVKVWKWRDER 69
Score = 29.4 bits (67), Expect = 4.1
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS + + + SD + I DV
Sbjct: 213 TFSPDSQLLV-----TASDDGYIKIYDVQHAN 239
Score = 29.4 bits (67), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A+S +GK+ A SG+ ++I D+ TGK
Sbjct: 171 AYSPDGKYLA-----SGAIDGIINIFDIATGK 197
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A
{Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1
d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Length = 907
Score = 31.1 bits (71), Expect = 1.4
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 14/69 (20%)
Query: 469 GTRVPMYIIHRVGALRNRR---NPVIIYG----YGGYGVSVLPTFSISRCMFLRHFNGIY 521
G R P + + A ++ Y +G + R Y
Sbjct: 458 GKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLT-----LRGAQ--FIGAGY 510
Query: 522 AIPNIRGGG 530
IPNIRG G
Sbjct: 511 NIPNIRGLG 519
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur,
oxidoreductase, purine metabolism, molybdenum cofactor,
hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter
capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Length = 777
Score = 31.1 bits (71), Expect = 1.4
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 24/71 (33%)
Query: 469 GTRVPMYIIHRVG--------ALRNRRNPVIIYG----YGGYGVSVLPTFSISRCMFLRH 516
G R I +R+G + V R M H
Sbjct: 267 GKRHDFRIRYRIGADASGKLLGADFV-----HLARCGWSADLSLPVCD-----RAML--H 314
Query: 517 FNGIYAIPNIR 527
+G Y +P +R
Sbjct: 315 ADGSYFVPALR 325
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 30.7 bits (70), Expect = 1.5
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 12/59 (20%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP-EVLK----NVKFPSISWTHDHKG 201
G A + S ++ I DV G L+ V ++W H G
Sbjct: 20 QMDYYGTRLA-----TCSSDRSVKIFDVRNGGQILIADLRGHEGPVW--QVAWAHPMYG 71
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 30.8 bits (70), Expect = 1.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
+ ++VP TLV+ G D VP +YKF+ +
Sbjct: 218 IRKVQVP--------TLVVQGKDDKVVPVETAYKFLDLI 248
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 30.8 bits (70), Expect = 1.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 8/35 (22%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKF 673
L +K+P + + G HD + P + S +
Sbjct: 217 LKFVKIP--------SFIYCGKHDVQCPYIFSCEI 243
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 31.0 bits (69), Expect = 1.6
Identities = 23/201 (11%), Positives = 54/201 (26%), Gaps = 26/201 (12%)
Query: 419 LQPGTIYHCNIPENITDQDDFKPTIFRETIVPEFEPTLF---QTKQVYFRSKDGTRVPM- 474
L+ + + + + I + + P T+ Q ++ ++++
Sbjct: 3 LEHEKLVNYIALGEFSRE---TAEIALKKMPPLDTLTVHYDLQLYKINYKTQSPDGNLTI 59
Query: 475 ---YIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCMFLRHF---NG-IYAIPNIR 527
+ + + +G V + ++L + G + +P+
Sbjct: 60 ASGLVAMPIHPVGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYL 119
Query: 528 GGGELGEDWH------NAGRLLKKQNCFDDFQAAAEYMINKKYTKPKYITIMGGSNGGLL 581
G G+ H + D AA E Y + + G S GG
Sbjct: 120 GLGDNELTLHPYVQAETLAS-----SSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFS 174
Query: 582 VGACLNQRPELYGAALILVGA 602
+ L +
Sbjct: 175 TIVMFEMLAK-EYPDLPVSAV 194
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.4 bits (71), Expect = 1.6
Identities = 28/203 (13%), Positives = 47/203 (23%), Gaps = 58/203 (28%)
Query: 210 IN--GTA----DGTETTAHMGQKIYYHVLGTEQDKDIPVVEFPNGRSLGLHSEVTDCGRY 263
+ D E ++I+ + + G D
Sbjct: 1271 LKLEAEEIPSEDQNEFLLERTREIH---------NEAESQLRAAQQQWGNDFYKRDPRIA 1321
Query: 264 LLVSTSNN--TQGSDLHYFDLH--SLPDGKISGKFPLKTVIPGMDHHHEIIANNGPELIV 319
L DL H S + + + M H + G +I
Sbjct: 1322 PLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEM---MKHLGR---SEGNPVIG 1375
Query: 320 KTTKNA---PKG----------------KVV--TINLNNP---CEKNWKTLIPEDENRTL 355
K PKG ++ N +N E+ L P +T
Sbjct: 1376 VFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTD 1435
Query: 356 DVVAAVANNK---------LIVH 369
V A + ++VH
Sbjct: 1436 GVRAVSITSFGFGQKGGQAIVVH 1458
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 30.6 bits (70), Expect = 1.7
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK-------NVKFPSISWTHD 198
A+S++G + A + S ++ I + D + E + +VK + W
Sbjct: 114 AWSNDGYYLA-----TCSRDKSVWIWETDESGEEYECISVLQEHSQDVK--HVIWHPS 164
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 30.6 bits (70), Expect = 1.7
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ +G FA SGSD T + D+ +
Sbjct: 247 RYYPSGDAFA-----SGSDDATCRLYDLRADR 273
Score = 29.8 bits (68), Expect = 2.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS +G+ +G + T+++ DV G
Sbjct: 291 DFSLSGRLLF-----AGYNDYTINVWDVLKGS 317
Score = 29.4 bits (67), Expect = 3.8
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ + + S S + + D T
Sbjct: 71 DWCKDKRRIV-----SSSQDGKVIVWDSFTTN 97
Score = 28.7 bits (65), Expect = 6.9
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+F+++ + S T + DV++G+
Sbjct: 161 SFTNSDMQIL-----TASGDGTCALWDVESGQ 187
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine
oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE
I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C*
3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C*
3sr6_C*
Length = 755
Score = 31.1 bits (71), Expect = 1.8
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 469 GTRVPMYIIHRVGALRN---RRNPVIIYGYGGYGVSVLPTFSISRCMFLRHFNGIYAIPN 525
G R P ++VG ++ V Y G + + + R +F H + Y IPN
Sbjct: 267 GGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSI-MERALF--HMDNCYKIPN 323
Query: 526 IRGGG 530
IRG G
Sbjct: 324 IRGTG 328
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 30.4 bits (68), Expect = 1.9
Identities = 18/147 (12%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 559 MINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGALDMLRFNKFTIAYYSE 618
I + ++G S GGL+ L L+ A L L
Sbjct: 128 SIESQLRTNGINVLVGHSFGGLVAMEALRTDRPLFSAYLAL------------------- 168
Query: 619 SEFGSPNNKTHFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS---YKFIA 675
+ + L+ +K Q + ++ S
Sbjct: 169 ----DTSLWFDSPHYLTLLEERVVKGDFKQKQL---FMAIANNPLSPGFGVSSYHKDLNL 221
Query: 676 TLQEKIGSLPYQKNPLLLRVEQDAGHG 702
+K+ L + + + + H
Sbjct: 222 AFADKLTKLAPKGLGFMAKYYPEETHQ 248
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein;
protein structure initiative II(PSI II), nysgxrc; 1.90A
{Streptococcus thermophilus lmg 18311}
Length = 268
Score = 30.4 bits (69), Expect = 1.9
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
+ER + +FT PY +K ++ G +
Sbjct: 92 DERKQSADFTEPYMVNEQVLVTKKSSGIDSVAGMAGKTL 130
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 30.8 bits (70), Expect = 2.0
Identities = 4/32 (12%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ + + + T+ + D ++GK
Sbjct: 362 GRYPDPNFKSC----TPYELRTIDVFDGNSGK 389
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 30.6 bits (70), Expect = 2.0
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
A++ +G + A G N I ++ T + V +
Sbjct: 104 AYAPSGNYVA-----CGGLDNICSIYNLKTREGNVRVSR 137
Score = 29.8 bits (68), Expect = 2.8
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F NG FA +GSD T + D+ +
Sbjct: 233 CFFPNGNAFA-----TGSDDATCRLFDLRADQ 259
Score = 29.8 bits (68), Expect = 3.1
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ + + S S L I D T
Sbjct: 62 HWGTDSRLLL-----SASQDGKLIIWDSYTTN 88
Score = 29.8 bits (68), Expect = 3.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+FS +G+ +G D ++ D
Sbjct: 277 SFSKSGRLLL-----AGYDDFNCNVWDALKAD 303
Score = 29.4 bits (67), Expect = 4.5
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ + + + F SG+ + + DV G
Sbjct: 191 SLAPDTRLFV-----SGACDASAKLWDVREGM 217
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine
transport system, protein structure initiative II(PSI
II); 2.06A {Legionella pneumophila subsp}
Length = 237
Score = 30.3 bits (69), Expect = 2.0
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 8/39 (20%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
+ER + F+ PY + D + DD HG KI
Sbjct: 75 DERKKHFIFSLPYMESNSQYITTVDSKISTFDDLHGKKI 113
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 30.4 bits (69), Expect = 2.0
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L IK TL++ G +D VP + ++ +
Sbjct: 225 LAEIKAQ--------TLIVWGRNDRFVPMDAGLRLLSGI 255
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand
binding domain, transport protein; HET: GLU; 2.10A
{Nostoc punctiforme}
Length = 228
Score = 29.9 bits (68), Expect = 2.1
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVEDDYHGMK 40
ER + +F+ P VR E+ D +
Sbjct: 73 AEREQNFDFSLPIFASGLQIMVRNLESGTGDIRSID 108
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 30.5 bits (68), Expect = 2.1
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 10/58 (17%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHI----KDVDTGKDYPEVLKNVKFPSISWTHDHKG 201
F+DNG D T+ KDV T + K ++++ D G
Sbjct: 221 KFADNGYWMV-----VECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272
>1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta
hydrolase, signaling protein; 2.50A {Bacillus subtilis}
PDB: 1wpr_A*
Length = 271
Score = 30.3 bits (69), Expect = 2.3
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 21/65 (32%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKI-GSLPYQKNPLLLRVEQ 697
L + VP +L+L D P + + + S L+ +
Sbjct: 206 LSKVTVP--------SLILQCADDIIAPATVG----KYMHQHLPYS--------SLKQME 245
Query: 698 DAGHG 702
GH
Sbjct: 246 ARGHC 250
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 30.2 bits (69), Expect = 2.6
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ +G + S S TL + DV TG+
Sbjct: 72 TLTADGAYAL-----SASWDKTLRLWDVATGE 98
Score = 29.0 bits (66), Expect = 6.2
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTG 178
A+S +G+ +G N + + V T
Sbjct: 293 AWSADGQTLF-----AGYTDNVIRVWQVMTA 318
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 30.3 bits (68), Expect = 2.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 559 MINKKY---TKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGAL 603
++ + + G S GGL PE +G L G+
Sbjct: 264 LVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSY 311
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design, bionanotechnology;
3.00A {Streptomyces aureofaciens} PDB: 4d9j_A
Length = 456
Score = 30.2 bits (68), Expect = 2.7
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIA 675
+ I VP L+L G D +P ++ +
Sbjct: 214 IPRIDVP--------ALILHGTGDRTLPIENTARVFH 242
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 30.3 bits (69), Expect = 2.8
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ F G+ + + D +
Sbjct: 104 TAKLQMRRFI-----LGTTEGDIKVLDSNFNL 130
Score = 29.5 bits (67), Expect = 4.8
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 8/43 (18%)
Query: 137 SKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S L F GK+ +G + + +V + +
Sbjct: 246 STSKKNNL---EFGTYGKYVI-----AGHVSGVITVHNVFSKE 280
Score = 29.1 bits (66), Expect = 5.8
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F +G+ S S L I V G
Sbjct: 146 KFFPSGEALI-----SSSQDMQLKIWSVKDGS 172
Score = 28.7 bits (65), Expect = 6.7
Identities = 3/32 (9%), Positives = 5/32 (15%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F G H + +
Sbjct: 63 TFEKVGSHLY-----KARLDGHDFLFNTIIRD 89
>4eq9_A ABC transporter substrate-binding protein-amino A transport;
structural genomics, niaid; HET: GSH; 1.40A
{Streptococcus pneumoniae}
Length = 246
Score = 29.6 bits (67), Expect = 3.2
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 6/28 (21%)
Query: 10 SEERAEKVEFTGPYPK------VRKDET 31
++ERAEK + P + V+KD++
Sbjct: 78 TKERAEKYLYAAPIAQNPNVLVVKKDDS 105
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 29.7 bits (68), Expect = 3.2
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A+S + S SD TL I DV +GK
Sbjct: 72 AWSSDSNLLV-----SASDDKTLKIWDVSSGK 98
Score = 29.7 bits (68), Expect = 3.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS NGK+ + + NTL + D GK
Sbjct: 199 KFSPNGKYIL-----AATLDNTLKLWDYSKGK 225
Score = 29.7 bits (68), Expect = 3.5
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
FS NG+ A S S + I GK
Sbjct: 30 KFSPNGEWLA-----SSSADKLIKIWGAYDGK 56
Score = 28.6 bits (65), Expect = 8.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F+ SGS ++ I DV TGK
Sbjct: 114 NFNPQSNLIV-----SGSFDESVRIWDVKTGK 140
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 29.9 bits (68), Expect = 3.3
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+F +GK A S S T+ + D +
Sbjct: 157 SFDHSGKLLA-----SCSADMTIKLWDFQGFE 183
Score = 29.5 bits (67), Expect = 3.8
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ +G A S S+ T+ + V T +
Sbjct: 241 RPNQDGTLIA-----SCSNDQTVRVWVVATKE 267
Score = 29.5 bits (67), Expect = 4.1
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F GK S +D TL + D +
Sbjct: 345 LFHSGGKFIL-----SCADDKTLRVWDYKNKR 371
Score = 29.1 bits (66), Expect = 5.0
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F S S+ T+ + D +TG
Sbjct: 115 IFHPVFSVMV-----SASEDATIKVWDYETGD 141
Score = 28.7 bits (65), Expect = 7.7
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ NG H S S T+ + +V TG
Sbjct: 199 SIMPNGDHIV-----SASRDKTIKMWEVQTGY 225
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 29.5 bits (65), Expect = 3.4
Identities = 27/166 (16%), Positives = 53/166 (31%), Gaps = 23/166 (13%)
Query: 453 EPTLFQTKQVYFRSKDGTRVPMYIIHRVGALRNRRNPVIIYGYGGYGVSVLPTFSISRCM 512
E L ++ + DG VP + +++ G+GG + +
Sbjct: 24 ERKLSVQERGFSLEVDGRTVPGVYWSPAEG---SSDRLVLLGHGGTTHKKVEYIEQVAKL 80
Query: 513 FLRHFNGIYAI-PNIRGGGE-----------LGEDWHNAGRLLKKQNCFD----DFQAAA 556
+ GI A+ + G GE R+ + D+ AA
Sbjct: 81 LVGR--GISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAAL 138
Query: 557 EYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILVGA 602
+++ ++ +P G S G ++ + A L L+G
Sbjct: 139 DFIEAEEGPRP--TGWWGLSMGTMMGLPVTASDKRIKVALLGLMGV 182
>2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone
biosynthesis, lyase; 1.94A {Staphylococcus aureus}
Length = 269
Score = 29.6 bits (67), Expect = 3.5
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 9/39 (23%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L IKVP TL+L G++ D + K +
Sbjct: 203 LKEIKVP--------TLILAGEY-DEKFVQIAKKMANLI 232
>3tql_A Arginine-binding protein; transport and binding proteins, transport
protein; HET: MSE ARG; 1.59A {Coxiella burnetii}
Length = 227
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 9/40 (22%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE---DDYHGMKI 41
R ++V+FT PY K+ + G I
Sbjct: 73 TARQKEVDFTDPYYTNSVSFIADKNTPLTLSKQGLKGKII 112
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 29.5 bits (67), Expect = 3.6
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A++ GK +G + +T
Sbjct: 316 AWNALGKKLF-----AGFTDGVIRTFSFETSA 342
Score = 29.5 bits (67), Expect = 3.9
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A S S S TL + D+ TG
Sbjct: 83 ALSQENCFAI-----SSSWDKTLRLWDLRTGT 109
Score = 28.3 bits (64), Expect = 8.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
+ S NGK+ A +G L I D+
Sbjct: 220 SISPNGKYIA-----TGGKDKKLLIWDILNLT 246
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.2 bits (65), Expect = 3.6
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 1 MSCESGPHPSEERAEKVEFTG--PYPKVRKDETVEDDYHG 38
M+ ES + R + P KV + VE G
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEG 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 29.7 bits (67), Expect = 3.7
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 180
+S N FA GS + + + D
Sbjct: 107 RWSPNEDKFA-----VGSGARVISVCYFEQEND 134
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 29.7 bits (66), Expect = 3.8
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 550 DDFQAAAEYMINKKYTKPKYITIMGGSNGGLLVGACLNQRPELYGAALILV 600
D A + + P ++G S GG AC +P L+ LIL+
Sbjct: 119 RDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLF-HLLILI 168
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding
protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP:
c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A*
1hpb_P*
Length = 239
Score = 29.1 bits (66), Expect = 3.8
Identities = 4/36 (11%), Positives = 13/36 (36%), Gaps = 6/36 (16%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVEDDYHGMK 40
++R +++ F+ K ++ +K
Sbjct: 75 DKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLESLK 110
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella
enterica subsp}
Length = 229
Score = 29.1 bits (66), Expect = 3.9
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
+R ++V F+ PY + V + D G K+
Sbjct: 77 PKREQQVSFSQPYYEGLSAVVVTRKGAYHTFADLKGKKV 115
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER
bacterium, transport protein; HET: LYS; 1.79A
{Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Length = 272
Score = 29.2 bits (66), Expect = 4.0
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 11 EERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
+ER + +F+ PY + V++ V+ D G I
Sbjct: 112 DERKQSYDFSDPYFEATQVILVKQGSPVKNALDLKGKTI 150
>2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK;
1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A*
2wug_A* 2vf2_A
Length = 291
Score = 29.2 bits (66), Expect = 4.0
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
++ ++ P L++ G D P + + T+
Sbjct: 226 VYRLRQP--------VLLIWGREDRVNPLDGALVALKTI 256
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 29.7 bits (67), Expect = 4.1
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 18/69 (26%)
Query: 274 GSDLHYFDLHSLPDGKISGKFPLKTVIPGMDHHHE---IIANNGPELIVKTTKNAPKGKV 330
G+D + GK L + G HE ++ + G +
Sbjct: 40 GADREIVNGKLTLSTLPKGKDFL---VLG----HEAIGVVEESYHGFSQ--------GDL 84
Query: 331 VTINLNNPC 339
V C
Sbjct: 85 VMPVNRRGC 93
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 29.6 bits (67), Expect = 4.2
Identities = 7/57 (12%), Positives = 24/57 (42%), Gaps = 10/57 (17%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLKNVKFP----SISWTHDHK 200
+ + +G A + S ++L + + + + +++ + W+H++K
Sbjct: 30 SGTVSGTVDA-----NFSTDSSLELWSLLAADS-EKPIASLQVDSKFNDLDWSHNNK 80
Score = 28.8 bits (65), Expect = 6.5
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 5/39 (12%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYPEVLK 186
+S N K A D +L + + + +
Sbjct: 74 DWSHNNKIIA-----GALDNGSLELYSTNEANNAINSMA 107
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 29.3 bits (66), Expect = 4.3
Identities = 13/73 (17%), Positives = 21/73 (28%), Gaps = 21/73 (28%)
Query: 629 HFHNLLSYSPLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQK 688
L L + P VL G+ D P + ++ +
Sbjct: 204 GLWRLDYTPYLTPERRP--------LYVLVGERDGTSYPYA-----EEVASRLRA----- 245
Query: 689 NPLLLRVEQDAGH 701
+RV +AGH
Sbjct: 246 ---PIRVLPEAGH 255
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 29.4 bits (67), Expect = 4.5
Identities = 8/32 (25%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F+ GK F S N L+ G
Sbjct: 272 KFAYCGKWFV-----STGKDNLLNAWRTPYGA 298
Score = 29.4 bits (67), Expect = 4.6
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP 182
+ G+ A G + + + + V+ Y
Sbjct: 231 GYCPTGEWLA-----VGMESSNVEVLHVNKPDKYQ 260
Score = 28.2 bits (64), Expect = 9.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S++G +G NT+ D+ G+
Sbjct: 190 DISNDGTKLW-----TGGLDNTVRSWDLREGR 216
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 28.7 bits (64), Expect = 4.6
Identities = 6/51 (11%), Positives = 12/51 (23%), Gaps = 1/51 (1%)
Query: 629 HFHNLLSYSPLHNIKVPPNNTQYPA-TLVLTGDHDDRVPPLHSYKFIATLQ 678
L P + P ++ HD+ +P +
Sbjct: 96 PTRALFLMVPPTKMGPLPALDAAAVPISIVHAWHDELIPAADVIAWAQARS 146
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 29.2 bits (65), Expect = 5.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKD 180
+S +G A SD TLH+ ++ +D
Sbjct: 247 KWSTDGSKLA-----VVSDKWTLHVFEIFNDQD 274
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 29.3 bits (66), Expect = 5.1
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 9/32 (28%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHS 670
L ++ P LV+ G+H D P
Sbjct: 259 LPDVTAP--------VLVIAGEH-DEATPKTW 281
>2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY
diffraction; 1.60A {Xanthomonas campestris} SCOP:
c.69.1.36
Length = 220
Score = 28.7 bits (63), Expect = 5.4
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 13/63 (20%)
Query: 654 TLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGH---GQGTPLMKS 710
LV+ GD D+ V P Y ++ TL+++ L D H + L +
Sbjct: 158 WLVIQGDADEIVDPQAVYDWLETLEQQPT----------LVRMPDTSHFFHRKLIDLRGA 207
Query: 711 IEE 713
++
Sbjct: 208 LQH 210
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 28.9 bits (65), Expect = 5.5
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 8/40 (20%)
Query: 638 PLHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
N + P ++ G +D V K I
Sbjct: 203 KNINYQFP--------FKIMVGRNDQVVGYQEQLKLINHN 234
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 29.1 bits (66), Expect = 5.7
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 13/57 (22%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGKDYP--EVLK----NVKFPSISWTHD 198
A++ +G A + S ++ + +VD +Y VL +VK + W
Sbjct: 112 AWAPSGNLLA-----TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK--HVVWHPS 161
Score = 28.3 bits (64), Expect = 9.1
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
A++ G A S + I +
Sbjct: 23 AWNPAGTLLA-----SCGGDRRIRIWGTEGDS 49
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 29.1 bits (66), Expect = 5.8
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 19/72 (26%)
Query: 274 GSDLHYFDLHSLPDGKISGKFPLKT-VIPGMDHHHE---IIANNGPELIVKTTKNAPKGK 329
GSD+HY++ G+I G F +K ++ G HE + G VK K G
Sbjct: 45 GSDVHYWE-----YGRI-GNFIVKKPMVLG----HEASGTVEKVGSS--VKHLK---PGD 89
Query: 330 VVTINLNNPCEK 341
V I P E
Sbjct: 90 RVAIEPGAPREN 101
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 28.9 bits (65), Expect = 5.9
Identities = 5/39 (12%), Positives = 10/39 (25%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
++ P L++ G+ V K
Sbjct: 251 YRDVTKP--------VLIVRGESSKLVSAAALAKTSRLR 281
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 29.3 bits (66), Expect = 6.5
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
S +G+ SGS L + D+ G
Sbjct: 437 VLSSDGQFAL-----SGSWDGELRLWDLAAGV 463
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 29.3 bits (66), Expect = 6.5
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 148 AFSDNGKHFAYCLSKSGSDWNTLHIKDVDTGK 179
F GSD + + + +TG+
Sbjct: 62 KFIARKNWII-----VGSDDFRIRVFNYNTGE 88
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB;
SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A
{Bacillus subtilis}
Length = 271
Score = 28.5 bits (64), Expect = 6.9
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 9 PSEERAEKVEFTGPYPK------VRKDETVE----DDYHGMKI 41
+++R EK F+ PY VRKD+ D G K
Sbjct: 93 VTKDREEKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKA 135
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 28.3 bits (64), Expect = 7.0
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 132 DPNKLSKDGTTALKLYAFSDNGKHFAYCLSKSGSDWNTLHIKDVD 176
++K AL Y N K G +H +D D
Sbjct: 164 KMGIMNKGVIYALWDYE-PQNDDELPM---KEGDCMTIIHREDED 204
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-BIND protein; HET: CYS GOL;
1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Length = 283
Score = 28.5 bits (64), Expect = 7.1
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 8/40 (20%)
Query: 10 SEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
S ER + + PY D ++ D G+K
Sbjct: 128 SPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADIKGVKT 167
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 28.4 bits (64), Expect = 7.2
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQD 698
+ I VP L+L G D +P ++ + LP + + VE
Sbjct: 213 IPRIDVP--------ALILHGTGDRTLPIENTARVFHKA------LP---SAEYVEVE-G 254
Query: 699 AGHG 702
A HG
Sbjct: 255 APHG 258
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate,
transport, ABC transport, virulence factor, receptor;
1.49A {Campylobacter jejuni}
Length = 259
Score = 28.5 bits (64), Expect = 7.3
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 8/40 (20%)
Query: 10 SEERAEKVEFTGPYPK------VRKDETVE--DDYHGMKI 41
+ ER F+ PY + V K++ + D G I
Sbjct: 112 TPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANI 151
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 28.5 bits (64), Expect = 7.4
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 9/42 (21%)
Query: 9 PSEERAEKVEFTGPYPK------VRKDETV---EDDYHGMKI 41
+ R + F+ PY + R+D D G +
Sbjct: 101 VNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTV 142
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product
complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia
pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Length = 179
Score = 28.0 bits (62), Expect = 7.6
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 75 TDREAIKEQLLRMANYEKYSAPQRQENNYFYFHNKGLQNHSILYVQRNLTGSTEVFLD 132
D + EQL+ ++ +++ Y + + L I V R + S
Sbjct: 18 MDLTTLHEQLVAQ-KATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWI 74
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 28.3 bits (63), Expect = 8.3
Identities = 6/41 (14%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 693 LRVE---QDAGHGQGTPLMKSIEEMTDIYVFLMKSLGLKYY 730
+ GTPL + + + D+ +++++ G++ +
Sbjct: 167 QHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAAGIREF 207
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 28.4 bits (64), Expect = 9.2
Identities = 12/39 (30%), Positives = 13/39 (33%), Gaps = 8/39 (20%)
Query: 639 LHNIKVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATL 677
L I VP LV G D VP + A L
Sbjct: 211 LKRIDVP--------VLVAHGTDDQVVPYADAAPKSAEL 241
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 27.9 bits (62), Expect = 9.8
Identities = 11/83 (13%), Positives = 24/83 (28%), Gaps = 13/83 (15%)
Query: 643 KVPPNNTQYPATLVLTGDHDDRVPPLHSYKFIATLQEKIGSLPYQKNPLLLRVEQDAGHG 702
+ +N P G D+ V + + + SL + H
Sbjct: 162 ALQKSNGVLPELFQCHGTADELVL----HSWAEETNSMLKSLGV---TTKFHSFPNVYHE 214
Query: 703 QGTPLMKSIEEMTDIYVFLMKSL 725
S E+ + ++++ L
Sbjct: 215 ------LSKTELDILKLWILTKL 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.423
Gapped
Lambda K H
0.267 0.0750 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,732,899
Number of extensions: 724608
Number of successful extensions: 2254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2133
Number of HSP's successfully gapped: 266
Length of query: 734
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 633
Effective length of database: 3,881,772
Effective search space: 2457161676
Effective search space used: 2457161676
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)