BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4819
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UZ8|A Chain A, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
pdb|2UZ8|B Chain B, The Crystal Structure Of P18, Human Translation Elongation
Factor 1 Epsilon 1
Length = 174
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 102 IKPLKTENLYLWKLFQAISSANVKRSD---ILWSSKEEEFLIKQWIEYTNSHILHASVSQ 158
I L+T N I++ VK+++ +L S+ EE+ ++QW+EY + + S
Sbjct: 30 IPVLQTNNGPSLXGLTTIAAHLVKQANKEYLLGSTAEEKAXVQQWLEYRVTQVDGHSSKN 89
Query: 159 VTSHVLNELNQVFSKQSFLVADRFTLADVFMYYSLISVFKELTLQSKEKHQHVSRWFNHV 218
+L +LN + +L FTLAD+ +YY L +LT+Q KEK+ +VSRWF H+
Sbjct: 90 DIHTLLXDLNSYLEDKVYLTGYNFTLADILLYYGLHRFIVDLTVQEKEKYLNVSRWFCHI 149
Query: 219 QSLPEVRLGNPVVLFSISTRFHT 241
Q P +R V+F I R +T
Sbjct: 150 QHYPGIRQHLSSVVF-IKNRLYT 171
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 268 KYFNISNQQYSTITNSNDIKPLKTENLYLWKLFQAISSANVKRSD---ILWSSKEEEFLI 324
K +S + I L+T N I++ VK+++ +L S+ EE+ +
Sbjct: 12 KSLGLSKGNKYSAQGERQIPVLQTNNGPSLXGLTTIAAHLVKQANKEYLLGSTAEEKAXV 71
Query: 325 KQWIEYTNSHILHASVSQVTSHVLNELNQVFSKQSFLVADRFTLADVFMYYSL 377
+QW+EY + + S +L +LN + +L FTLAD+ +YY L
Sbjct: 72 QQWLEYRVTQVDGHSSKNDIHTLLXDLNSYLEDKVYLTGYNFTLADILLYYGL 124
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 2 ELTLQSKEKHQHVSRWFNHVQSLPEVRLGNPVVLFSSTFIRQR 44
+LT+Q KEK+ +VSRWF H+Q P +R L S FI+ R
Sbjct: 130 DLTVQEKEKYLNVSRWFCHIQHYPGIRQH----LSSVVFIKNR 168
>pdb|3C8E|A Chain A, Crystal Structure Analysis Of Yghu From E. Coli
pdb|3C8E|B Chain B, Crystal Structure Analysis Of Yghu From E. Coli
Length = 288
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 163 VLNELNQVFSKQSFLVADRFTLADV-----FMYYSLISVFKELTLQSKEKHQHVSRWFNH 217
+L+ L++ ++ F+ D +T+AD+ F L V+ ++HV RW
Sbjct: 186 LLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGNVVLGGVYDAAEFLDAGSYKHVQRWAKE 245
Query: 218 VQSLPEVRLG 227
V P V+ G
Sbjct: 246 VGERPAVKRG 255
>pdb|2HQT|A Chain A, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|B Chain B, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|C Chain C, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|D Chain D, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|E Chain E, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|F Chain F, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|G Chain G, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|H Chain H, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|I Chain I, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|J Chain J, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|K Chain K, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|L Chain L, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|M Chain M, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|N Chain N, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|O Chain O, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|P Chain P, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|Q Chain Q, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|R Chain R, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|S Chain S, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
pdb|2HQT|T Chain T, Crystal Structures Of The Interacting Domains From Yeast
Glutamyl-Trna Synthetase And Trna Aminoacylation And
Nuclear Export Cofactor Arc1p Reveal A Novel Function
For An Old Fold
Length = 124
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 133 SKEEEFLIKQWIEYTNSHILHASVSQVTSHVLNELNQVFSKQSFLVADRF-TLADVFMYY 191
+KE+ QW S Q+ H L++LN V +F+V+ + T DV ++
Sbjct: 23 TKEQSAQAAQWESVLKS-------GQIQPH-LDQLNLVLRDNTFIVSTLYPTSTDVHVFE 74
Query: 192 SLISVFKELTLQSKE------KHQHVSRWFNHVQSLPEV 224
+ + K+L SK+ ++H+ RW +++Q+L EV
Sbjct: 75 VALPLIKDLVASSKDVKSTYTTYRHILRWIDYMQNLLEV 113
>pdb|2HRK|B Chain B, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
pdb|2HSM|B Chain B, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
pdb|2HSN|B Chain B, Structural Basis Of Yeast Aminoacyl-Trna Synthetase
Complex Formation Revealed By Crystal Structures Of Two
Binary Sub- Complexes
Length = 122
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 157 SQVTSHVLNELNQVFSKQSFLVADRF-TLADVFMYYSLISVFKELTLQSKE------KHQ 209
Q+ H L++LN V +F+V+ + T DV ++ + + K+L SK+ ++
Sbjct: 38 GQIQPH-LDQLNLVLRDNTFIVSTLYPTSTDVHVFEVALPLIKDLVASSKDVKSTYTTYR 96
Query: 210 HVSRWFNHVQSLPEV 224
H+ RW +++Q+L EV
Sbjct: 97 HILRWIDYMQNLLEV 111
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 220 SLPEVRLGNPVVLFSISTRFHTFCSPYFRENKRTSNTMALNFIE---QNVTKYFN 271
+L E+ NP+++ SI F + S RE+K T ALNFIE +N KY N
Sbjct: 130 ALEEIAKANPMLMASIVRDFMSMLSSKNREDKLT----ALNFIEAMGENSFKYVN 180
>pdb|3LSZ|A Chain A, Crystal Structure Of Glutathione S-Transferase From
Rhodobacter Sphaeroides
pdb|3LSZ|B Chain B, Crystal Structure Of Glutathione S-Transferase From
Rhodobacter Sphaeroides
pdb|3LSZ|C Chain C, Crystal Structure Of Glutathione S-Transferase From
Rhodobacter Sphaeroides
pdb|3LSZ|D Chain D, Crystal Structure Of Glutathione S-Transferase From
Rhodobacter Sphaeroides
Length = 225
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 164 LNELNQVFSKQSFLVADRFTLADVFMYYSLISVFKELTLQSKEKHQHVSRWFNHVQSLPE 223
L L + F+ + +LV RFT+AD+ + +L + + E V+ W + QS P
Sbjct: 150 LARLERHFAAEDYLVGGRFTVADLNLAETL--RYGQAHPALLEPFPAVAAWLDRCQSRPA 207
Query: 224 VRL 226
RL
Sbjct: 208 FRL 210
>pdb|3ERF|A Chain A, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae
pdb|3ERG|A Chain A, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae In
Complex With Glutathione Sulfnate
pdb|3ERG|B Chain B, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae In
Complex With Glutathione Sulfnate
pdb|3IBH|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gtt2 In
Complex With Glutathione
Length = 233
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 162 HVLNELNQVFSKQSFLVADRFTLADVFMYYSLI--SVFKELTLQSKEKHQHVSRWFNHVQ 219
H ++ + V ++ ++ D F++AD+ + LI ++ K LQ E+ + + W+ +Q
Sbjct: 161 HGMHYFDTVLRERPYVAGDSFSMADITVIAGLIFAAIVK---LQVPEECEALRAWYKRMQ 217
Query: 220 SLPEVR 225
P V+
Sbjct: 218 QRPSVK 223
>pdb|3EZ7|A Chain A, Partition Protein Apo Form In Space Group I4122
Length = 398
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 124 VKRSDILWSSKEEEFLIKQWIEYTNSHILHASVSQVTSHVLNELNQVFSKQSFLVADRFT 183
V D++ +S ++ F+ W E N H+ ++ V N ++++ S F++ D
Sbjct: 197 VPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKE--NVIDKLKSDYDFILVDSGP 254
Query: 184 LADVFMYYSLIS---VFKELTLQSKEKHQHVSRWFNHVQSLPEV 224
D F+ +L S +F L + + H +V LPE+
Sbjct: 255 HLDAFLKNALASANILFTPLPPATVDFHS----SLKYVARLPEL 294
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 308 VKRSDILWSSKEEEFLIKQWIEYTNSHILHASVSQVTSHVLNELNQVFSKQSFLVADRFT 367
V D++ +S ++ F+ W E N H+ ++ V N ++++ S F++ D
Sbjct: 197 VPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKE--NVIDKLKSDYDFILVDSGP 254
Query: 368 LADVFMYYSLISV 380
D F+ +L S
Sbjct: 255 HLDAFLKNALASA 267
>pdb|3EZ2|A Chain A, Partition Protein-Adp Complex
pdb|3EZ2|B Chain B, Partition Protein-Adp Complex
pdb|3EZ6|A Chain A, Structure Of Para-Adp Complex:tetragonal Form
pdb|3EZ6|B Chain B, Structure Of Para-Adp Complex:tetragonal Form
Length = 398
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 124 VKRSDILWSSKEEEFLIKQWIEYTNSHILHASVSQVTSHVLNELNQVFSKQSFLVADRFT 183
V D++ +S ++ F+ W E N H+ ++ V N ++++ S F++ D
Sbjct: 197 VPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKE--NVIDKLKSDYDFILVDSGP 254
Query: 184 LADVFMYYSLIS---VFKELTLQSKEKHQHVSRWFNHVQSLPEV 224
D F+ +L S +F L + + H +V LPE+
Sbjct: 255 HLDAFLKNALASANILFTPLPPATVDFHS----SLKYVARLPEL 294
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 308 VKRSDILWSSKEEEFLIKQWIEYTNSHILHASVSQVTSHVLNELNQVFSKQSFLVADRFT 367
V D++ +S ++ F+ W E N H+ ++ V N ++++ S F++ D
Sbjct: 197 VPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKE--NVIDKLKSDYDFILVDSGP 254
Query: 368 LADVFMYYSLISV 380
D F+ +L S
Sbjct: 255 HLDAFLKNALASA 267
>pdb|3RI7|A Chain A, Toluene 4 Monooxygenase Hd Mutant G103l
Length = 492
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 88 QDPVQYSTITN------SNDIKPLKTENLYLWKLFQAISSANVKRSDILWSSK 134
QDPVQY N + I+P+ E + FQ+I D W+ K
Sbjct: 438 QDPVQYQNHMNIVDRFLAGQIQPMTLEGALKYMGFQSIEEMGKDAHDFAWADK 490
>pdb|3RMK|A Chain A, Toluene 4 Monooxygenase H With 4-bromophenol
pdb|3RMK|D Chain D, Toluene 4 Monooxygenase H With 4-bromophenol
Length = 492
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 88 QDPVQYSTITN------SNDIKPLKTENLYLWKLFQAISSANVKRSDILWSSK 134
QDPVQY N + I+P+ E + FQ+I D W+ K
Sbjct: 438 QDPVQYQNHMNIVDRFLAGQIQPMTLEGALKYMGFQSIEEMGKDAHDFAWADK 490
>pdb|3DHG|A Chain A, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHG|D Chain D, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHH|A Chain A, Crystal Structure Of Resting State Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
pdb|3DHI|A Chain A, Crystal Structure Of Reduced Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
pdb|3I5J|A Chain A, Diferric Resting State Toluene 4-Monooxygenase Hd Complex
pdb|3I63|A Chain A, Peroxide Bound Toluene 4-Monooxygenase
pdb|3Q14|A Chain A, Toluene 4 Monooxygenase Hd Complex With P-Cresol
pdb|3Q2A|A Chain A, Toluene 4 Monooxygenase Hd Complex With Inhibitor
P-Aminobenzoate
pdb|3Q3M|A Chain A, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3M|D Chain D, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3N|A Chain A, Toluene 4 Monooxygenase Hd Complex With P-Nitrophenol
pdb|3Q3O|A Chain A, Toluene 4 Monooxygenase Hd Complex With Phenol
Length = 500
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 88 QDPVQYSTITN------SNDIKPLKTENLYLWKLFQAISSANVKRSDILWSSK 134
QDPVQY N + I+P+ E + FQ+I D W+ K
Sbjct: 439 QDPVQYQNHMNIVDRFLAGQIQPMTLEGALKYMGFQSIEEMGKDAHDFAWADK 491
>pdb|3GE3|A Chain A, Crystal Structure Of The Reduced Toluene 4-Monooxygenase
Hd T201a Mutant Complex
pdb|3GE8|A Chain A, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3GE8|D Chain D, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
Length = 500
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 88 QDPVQYSTITN------SNDIKPLKTENLYLWKLFQAISSANVKRSDILWSSK 134
QDPVQY N + I+P+ E + FQ+I D W+ K
Sbjct: 439 QDPVQYQNHMNIVDRFLAGQIQPMTLEGALKYMGFQSIEEMGKDAHDFAWADK 491
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,677,058
Number of Sequences: 62578
Number of extensions: 404482
Number of successful extensions: 962
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 949
Number of HSP's gapped (non-prelim): 30
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)