Query psy4822
Match_columns 124
No_of_seqs 114 out of 1100
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 18:38:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.3E-33 4.6E-38 242.7 8.6 99 1-101 391-491 (697)
2 2v26_A Myosin VI; calmodulin-b 100.0 1.7E-33 6E-38 244.5 8.4 101 1-103 457-559 (784)
3 1w7j_A Myosin VA; motor protei 100.0 7.2E-33 2.5E-37 240.9 8.8 99 1-102 442-543 (795)
4 4anj_A Unconventional myosin-V 100.0 1.1E-32 3.6E-37 245.0 7.9 101 1-103 461-563 (1052)
5 4db1_A Myosin-7; S1DC, cardiac 100.0 1.4E-32 4.7E-37 238.7 8.0 100 1-103 466-569 (783)
6 1w9i_A Myosin II heavy chain; 100.0 4E-32 1.4E-36 235.4 8.4 101 1-103 459-564 (770)
7 2dfs_A Myosin-5A; myosin-V, in 100.0 5.3E-32 1.8E-36 241.4 8.4 99 1-102 442-543 (1080)
8 1kk8_A Myosin heavy chain, str 100.0 5.4E-32 1.9E-36 236.4 7.4 100 1-103 465-568 (837)
9 2ycu_A Non muscle myosin 2C, a 100.0 7.5E-32 2.6E-36 238.9 8.3 100 1-102 438-542 (995)
10 1g8x_A Myosin II heavy chain f 100.0 1.9E-31 6.4E-36 236.6 8.9 101 1-103 459-564 (1010)
11 1i84_S Smooth muscle myosin he 100.0 2E-31 6.8E-36 239.0 8.2 100 1-102 469-573 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 25.4 18 0.00061 21.0 0.3 25 50-74 25-49 (53)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.3e-33 Score=242.69 Aligned_cols=99 Identities=31% Similarity=0.553 Sum_probs=96.8
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeecccCCchhhhHhhhcCcCCccccchhhhhcCCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANVGFNNA 80 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~~ 80 (124)
|.|+.|||||||||||||+||++|++++|+.||+||..|||+|..|+|.||++|||||+++|.|||+||||||+ +|++
T Consensus 391 E~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~--~p~~ 468 (697)
T 1lkx_A 391 EVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACL--IAKS 468 (697)
T ss_dssp CCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHH--STTC
T ss_pred cccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhC--CCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCch--hhHHHHcCCCccccCCC
Q psy4822 81 QNEK--SPFTLEMGNTECIHDPD 101 (124)
Q Consensus 81 td~~--~kl~~~~~~~~~f~~p~ 101 (124)
||.+ +||++++++|+.|.+|+
T Consensus 469 tD~~f~~kl~~~~~~~~~f~~~~ 491 (697)
T 1lkx_A 469 TDQTFLDSICKQFEKNPHLQSYV 491 (697)
T ss_dssp CHHHHHHHHHHHSSSSTTEECTT
T ss_pred ChHHHHHHHHHHhcCCCccccCC
Confidence 9999 99999999999999875
No 2
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=1.7e-33 Score=244.46 Aligned_cols=101 Identities=32% Similarity=0.622 Sum_probs=97.9
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeecccCCchhhhHhhhcCcCCccccchhhhhcCCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANVGFNNA 80 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~~ 80 (124)
|.|+.|||||||||||||+||++|++++|+.||+||..|||+|..|+|.||++|||||+++|.|||+||||||+ +|++
T Consensus 457 E~f~~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~--~p~~ 534 (784)
T 2v26_A 457 EYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENR--LPQP 534 (784)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHH--SSSC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhc--CCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCch--hhHHHHcCCCccccCCCCC
Q psy4822 81 QNEK--SPFTLEMGNTECIHDPDPR 103 (124)
Q Consensus 81 td~~--~kl~~~~~~~~~f~~p~~~ 103 (124)
||.+ +||++.|++|+.|.+|+.+
T Consensus 535 tD~~f~~kl~~~~~~~~~~~~p~~~ 559 (784)
T 2v26_A 535 SDQHFTSAVHQKHKDHFRLSIPRKS 559 (784)
T ss_dssp CHHHHHHHHHHHTTTCTTEECGGGC
T ss_pred ChHHHHHHHHHHhCCCcccccCCCc
Confidence 9999 9999999999999988654
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.97 E-value=7.2e-33 Score=240.87 Aligned_cols=99 Identities=39% Similarity=0.704 Sum_probs=96.2
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeecccCCchhhhHhhhcCcCCccccchhhhhcCCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANVGFNNA 80 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~~ 80 (124)
|.|+.|||||||||||||+||++|++++|+.||+||..|||+|..|+|.||++|||||+++ .|||+||||||+ +|++
T Consensus 442 E~f~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~--~p~~ 518 (795)
T 1w7j_A 442 ETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECK--MPKG 518 (795)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHT--STTC
T ss_pred cccCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhcc--CCCC
Confidence 7899999999999999999999999999999999999999999999999999999999987 899999999999 9999
Q ss_pred CCch--hhHHHHc-CCCccccCCCC
Q psy4822 81 QNEK--SPFTLEM-GNTECIHDPDP 102 (124)
Q Consensus 81 td~~--~kl~~~~-~~~~~f~~p~~ 102 (124)
||++ +||++.| ++|+.|.+|+.
T Consensus 519 tD~~f~~kl~~~~~~~~~~f~~p~~ 543 (795)
T 1w7j_A 519 SDDTWAQKLYNTHLNKCALFEKPRL 543 (795)
T ss_dssp CHHHHHHHHHHHHTTTCTTEECCTT
T ss_pred ChHHHHHHHHHHhhccCCccccCCC
Confidence 9999 9999998 99999999975
No 4
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.97 E-value=1.1e-32 Score=245.01 Aligned_cols=101 Identities=32% Similarity=0.622 Sum_probs=98.0
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeecccCCchhhhHhhhcCcCCccccchhhhhcCCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANVGFNNA 80 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~~ 80 (124)
|+|+.|||||||||||||+||++|++++|+.||++|..|||+|..|+|.||++|||||+++|.|||+||||||+ +|++
T Consensus 461 E~f~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~--~p~~ 538 (1052)
T 4anj_A 461 EYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENR--LPQP 538 (1052)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHH--SSSC
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhc--CCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCch--hhHHHHcCCCccccCCCCC
Q psy4822 81 QNEK--SPFTLEMGNTECIHDPDPR 103 (124)
Q Consensus 81 td~~--~kl~~~~~~~~~f~~p~~~ 103 (124)
||++ ++|++.|++|+.|..|+..
T Consensus 539 tD~~f~~kl~~~~~~~~~~~~~~~~ 563 (1052)
T 4anj_A 539 SDQHFTSAVHQKHKDHFRLSIPRKS 563 (1052)
T ss_dssp CHHHHHHHHHHTTTTCTTEECGGGC
T ss_pred cHHHHHHHHHHHhccCccccCCccc
Confidence 9999 9999999999999888654
No 5
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.97 E-value=1.4e-32 Score=238.67 Aligned_cols=100 Identities=38% Similarity=0.773 Sum_probs=94.1
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeeccc-CCchhhhHhhhcCcCCccccchhhhhcCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANVGFNN 79 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~ 79 (124)
|.|+.|||||||||||||+||++|++++|+.||++|..|||+|..|+| .||++|||||++ |.|||+||||||+ +|+
T Consensus 466 E~f~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~--~p~ 542 (783)
T 4db1_A 466 EIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECM--FPK 542 (783)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TT--CTT
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhc--CCC
Confidence 789999999999999999999999999999999999999999999999 599999999995 8999999999999 999
Q ss_pred CCCch--hhHHHHc-CCCccccCCCCC
Q psy4822 80 AQNEK--SPFTLEM-GNTECIHDPDPR 103 (124)
Q Consensus 80 ~td~~--~kl~~~~-~~~~~f~~p~~~ 103 (124)
+||.+ +||++.| ++|+.|.+|+..
T Consensus 543 ~tD~tf~~kl~~~~~~~~~~f~~~~~~ 569 (783)
T 4db1_A 543 ATDMTFKAKLFDNHLGKSANFQKPRNI 569 (783)
T ss_dssp CCHHHHHHHHHHHHTTTCTTEECCCC-
T ss_pred CCHHHHHHHHHHHhcCCCCCccCCCCC
Confidence 99999 9999877 999999999754
No 6
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.97 E-value=4e-32 Score=235.40 Aligned_cols=101 Identities=41% Similarity=0.762 Sum_probs=94.9
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeeccc-CCchhhhHhhhcC-cCCccccchhhhhcCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQANVGFN 78 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldLi~~k-p~Gll~lLDeec~~~~p 78 (124)
|.|+.|||||||||||||+||++|++++|+.||++|..|||+|..|+| .||++|||||+++ |.|||+||||||+ +|
T Consensus 459 E~F~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~--~p 536 (770)
T 1w9i_A 459 EIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV--FP 536 (770)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHS--SS
T ss_pred cccccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhC--CC
Confidence 789999999999999999999999999999999999999999999999 5999999999984 9999999999999 99
Q ss_pred CCCCch--hhH-HHHcCCCccccCCCCC
Q psy4822 79 NAQNEK--SPF-TLEMGNTECIHDPDPR 103 (124)
Q Consensus 79 ~~td~~--~kl-~~~~~~~~~f~~p~~~ 103 (124)
++||.+ +|| .+++++|+.|.+|+..
T Consensus 537 ~~tD~~f~~kL~~~~~~~~~~f~~p~~~ 564 (770)
T 1w9i_A 537 NATDNTLITKLHSHFSKKNAKYEEPRFS 564 (770)
T ss_dssp SCCHHHHHHHHHHHHTTTSTTEECCSSC
T ss_pred CCChHHHHHHHHHHhcCCCCCccCCCCC
Confidence 999999 996 4567999999999753
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.97 E-value=5.3e-32 Score=241.37 Aligned_cols=99 Identities=39% Similarity=0.704 Sum_probs=96.1
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeecccCCchhhhHhhhcCcCCccccchhhhhcCCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANVGFNNA 80 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~~ 80 (124)
|.|+.|||||||||||||+||++|++++|+.||++|..|||+|..|+|.||++|||||+++ .|||+||||||+ +|++
T Consensus 442 E~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~--~p~~ 518 (1080)
T 2dfs_A 442 ETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECK--MPKG 518 (1080)
T ss_dssp CCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTT--STTC
T ss_pred cccCcCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-Cceeeecccccc--CCCC
Confidence 7899999999999999999999999999999999999999999999999999999999987 899999999999 9999
Q ss_pred CCch--hhHHHHc-CCCccccCCCC
Q psy4822 81 QNEK--SPFTLEM-GNTECIHDPDP 102 (124)
Q Consensus 81 td~~--~kl~~~~-~~~~~f~~p~~ 102 (124)
||.+ +||++.| ++|+.|.+|+.
T Consensus 519 tD~~f~~kl~~~~~~~~~~f~~p~~ 543 (1080)
T 2dfs_A 519 SDDTWAQKLYNTHLNKCALFEKPRL 543 (1080)
T ss_dssp CHHHHHHHHHHHHBTTBSSEECCTT
T ss_pred ChHHHHHHHHHHhhcCCCCccCCCC
Confidence 9999 9999998 99999999975
No 8
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.97 E-value=5.4e-32 Score=236.35 Aligned_cols=100 Identities=41% Similarity=0.839 Sum_probs=94.4
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeeccc-CCchhhhHhhhcCcCCccccchhhhhcCCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQANVGFNN 79 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldLi~~kp~Gll~lLDeec~~~~p~ 79 (124)
|.|+.|||||||||||||+||++|++++|+.||+||..|||+|..|+| .||++|||||++ |.|||+||||||+ +|+
T Consensus 465 E~f~~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~--~p~ 541 (837)
T 1kk8_A 465 EIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECM--FPK 541 (837)
T ss_dssp CCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTT--CTT
T ss_pred cccccccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhc--CCC
Confidence 789999999999999999999999999999999999999999999999 599999999996 8999999999999 999
Q ss_pred CCCch--hhH-HHHcCCCccccCCCCC
Q psy4822 80 AQNEK--SPF-TLEMGNTECIHDPDPR 103 (124)
Q Consensus 80 ~td~~--~kl-~~~~~~~~~f~~p~~~ 103 (124)
+||.+ +|| .+++++|+.|.+|+..
T Consensus 542 ~tD~tf~~kl~~~~~~~~~~f~~p~~~ 568 (837)
T 1kk8_A 542 ADDKSFQDKLYQNHMGKNRMFTKPGKP 568 (837)
T ss_dssp CCHHHHHHHHHHHHTTTCSSEECCCSC
T ss_pred CChHHHHHHHHHHhcCCCcCccCCCcc
Confidence 99999 995 4677999999999753
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.97 E-value=7.5e-32 Score=238.89 Aligned_cols=100 Identities=41% Similarity=0.773 Sum_probs=96.4
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeeccc-CCchhhhHhhhc--CcCCccccchhhhhcCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQANVGF 77 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldLi~~--kp~Gll~lLDeec~~~~ 77 (124)
|.|+.|||||||||||||+||++|++++|+.||++|..|||+|..|+| .||++|||||++ +|.|||+||||||+ +
T Consensus 438 E~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~--~ 515 (995)
T 2ycu_A 438 EIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECW--F 515 (995)
T ss_dssp CCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSS--S
T ss_pred cccccchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhc--C
Confidence 789999999999999999999999999999999999999999999999 699999999998 48999999999999 9
Q ss_pred CCCCCch--hhHHHHcCCCccccCCCC
Q psy4822 78 NNAQNEK--SPFTLEMGNTECIHDPDP 102 (124)
Q Consensus 78 p~~td~~--~kl~~~~~~~~~f~~p~~ 102 (124)
|++||.+ +||...|++|+.|.+|+.
T Consensus 516 p~~tD~~f~~kl~~~~~~~~~f~~~~~ 542 (995)
T 2ycu_A 516 PKATDKSFVEKVAQEQGGHPKFQRPRH 542 (995)
T ss_dssp TTCCHHHHHHHHHHHHTTSTTEECCCT
T ss_pred CCCchHHHHHHHHHhcCCCCCcccCCc
Confidence 9999999 999999999999999975
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.97 E-value=1.9e-31 Score=236.58 Aligned_cols=101 Identities=41% Similarity=0.777 Sum_probs=96.8
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeeccc-CCchhhhHhhhc-CcCCccccchhhhhcCCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQANVGFN 78 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldLi~~-kp~Gll~lLDeec~~~~p 78 (124)
|.|+.|||||||||||||+||++|++++|+.||++|..|||+|..|+| .||++|||||++ +|.|||+||||||+ +|
T Consensus 459 E~f~~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~--~p 536 (1010)
T 1g8x_A 459 EIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSV--FP 536 (1010)
T ss_dssp CCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTT--SS
T ss_pred ccCCcCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhC--CC
Confidence 789999999999999999999999999999999999999999999999 599999999998 49999999999999 99
Q ss_pred CCCCch--hhHHHHcC-CCccccCCCCC
Q psy4822 79 NAQNEK--SPFTLEMG-NTECIHDPDPR 103 (124)
Q Consensus 79 ~~td~~--~kl~~~~~-~~~~f~~p~~~ 103 (124)
++||.+ +||+++++ +|+.|.+|+..
T Consensus 537 ~~td~~f~~kl~~~~~~~~~~f~~~~~~ 564 (1010)
T 1g8x_A 537 NATDNTLITKLHSHFSKKNAKYEEPRFS 564 (1010)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTEECCTTC
T ss_pred CCChHHHHHHHHHHhcCCCCCcccCCCC
Confidence 999999 99999999 99999999753
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.97 E-value=2e-31 Score=238.99 Aligned_cols=100 Identities=40% Similarity=0.763 Sum_probs=95.2
Q ss_pred CCCCCCchhhHHHhhhhHHHHHHHHHHHhHHHHHHhhhhCCeeeeccc-CCchhhhHhhhcC--cCCccccchhhhhcCC
Q psy4822 1 MYYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQANVGF 77 (124)
Q Consensus 1 e~f~~NsfeQl~iN~anE~Lq~~~~~~~f~~e~~ey~~Egi~~~~i~~-~dn~~~ldLi~~k--p~Gll~lLDeec~~~~ 77 (124)
|.|+.|||||||||||||+||++|++++|+.+|++|..|||+|..|+| .||++|||||+++ |.|||+||||||+ +
T Consensus 469 E~f~~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~--~ 546 (1184)
T 1i84_S 469 EIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECW--F 546 (1184)
T ss_dssp CCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTS--C
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhC--C
Confidence 789999999999999999999999999999999999999999999999 6999999999963 3499999999999 9
Q ss_pred CCCCCch--hhHHHHcCCCccccCCCC
Q psy4822 78 NNAQNEK--SPFTLEMGNTECIHDPDP 102 (124)
Q Consensus 78 p~~td~~--~kl~~~~~~~~~f~~p~~ 102 (124)
|++||.+ +||++.|++|+.|.+|+.
T Consensus 547 p~~td~~~~~kl~~~~~~~~~~~~~~~ 573 (1184)
T 1i84_S 547 PKATDTSFVEKLIQEQGNHAKFQKSKQ 573 (1184)
T ss_dssp TTCCHHHHHHHHHHHTSSCTTEEECSS
T ss_pred CCCChHHHHHHHHHHhCCCCCccCCCC
Confidence 9999999 999999999999999975
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=25.41 E-value=18 Score=21.00 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.0
Q ss_pred CchhhhHhhhcCcCCccccchhhhh
Q psy4822 50 DNTLCLQLVEGKPNGLLCVLDDQAN 74 (124)
Q Consensus 50 dn~~~ldLi~~kp~Gll~lLDeec~ 74 (124)
.|.-.+|++..+..|+=..|.|+|.
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC 49 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCC 49 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchh
Confidence 5778899998888999999999997
Done!