RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4822
(124 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 124 bits (314), Expect = 1e-34
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 66
FEQ CINY NE LQ +FN+ + + EQE Y KEG+ + + DN C+ L+E + G+L
Sbjct: 463 SFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGIL 522
Query: 67 CVLDDQ 72
+LD++
Sbjct: 523 DILDEE 528
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 123 bits (310), Expect = 5e-34
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 66
FEQL IN+ NE LQ F + + EQEEY +EGI W++IE+ +N +L+E KP GL+
Sbjct: 397 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 456
Query: 67 CVLDDQ 72
+LD+
Sbjct: 457 SLLDEA 462
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 119 bits (300), Expect = 9e-33
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 66
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 67 CVLDDQ 72
+LD++
Sbjct: 507 DLLDEE 512
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 118 bits (299), Expect = 1e-32
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 66
FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F DN C+ L+E G+L
Sbjct: 448 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIE-AKMGVL 506
Query: 67 CVLDDQ 72
+LD++
Sbjct: 507 DLLDEE 512
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 113 bits (286), Expect = 1e-30
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 64
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 65 LLCVLDDQ 72
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 113 bits (285), Expect = 1e-30
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPN 63
FEQLCINY NE LQ FN +F EQEEY +EGI W ++F D C+ L+E P
Sbjct: 444 SFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPP 503
Query: 64 GLLCVLDDQ 72
GLL +LD++
Sbjct: 504 GLLALLDEE 512
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 113 bits (284), Expect = 2e-30
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 65
FEQLCIN+ NE LQ +FN H+F EQEEY KEGI W I+F D C+ L+E KP G+
Sbjct: 472 SFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIE-KPMGI 530
Query: 66 LCVLDDQ 72
+ +L+++
Sbjct: 531 MSILEEE 537
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 113 bits (284), Expect = 2e-30
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNG 64
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G+ P G
Sbjct: 465 SFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 524
Query: 65 LLCVLDDQ 72
+L +LD+Q
Sbjct: 525 ILALLDEQ 532
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 112 bits (282), Expect = 3e-30
Identities = 37/67 (55%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 7 GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGL 65
FEQLCINY NE LQ +FN H+F EQEEY KEGI W I+F D +C+ L+E KP G+
Sbjct: 471 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIE-KPMGI 529
Query: 66 LCVLDDQ 72
L +L+++
Sbjct: 530 LSILEEE 536
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 109 bits (275), Expect = 3e-29
Identities = 35/74 (47%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 2 YYKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG 60
+++ FEQLCINY NE LQ FN +F EQEEY +EGI W I+F D C++L+E
Sbjct: 470 IFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIER 529
Query: 61 K--PNGLLCVLDDQ 72
P G+L +LD++
Sbjct: 530 PTNPPGVLALLDEE 543
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.11
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 18 EHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDD 71
E LQ Q + + I+ R L + N LL VL +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN 252
Score = 26.7 bits (58), Expect = 2.4
Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 25/132 (18%)
Query: 14 NYANEHLQYYFNQHVFQYEQ-----EEYNKEGIRWRHIE-FSDNTLCLQLVE---GKPNG 64
++ + H+ + +H +QY+ E+ + + ++ + L + ++ +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 65 LL-------CVLDDQANVG---FNNAQNEKSPFTLEMGNTECIHDPDPRIRIERRSDYFN 114
+ +L Q + F + TE P + + +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRMYIEQRD 117
Query: 115 PEIN---RFKKY 123
N F KY
Sbjct: 118 RLYNDNQVFAKY 129
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 26.0 bits (57), Expect = 3.0
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 17 NEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 50
E + + Y K G++ HI D
Sbjct: 36 PEDWEIEESWGDKDYYLSILKKNGLQPLHIPIPD 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 7.3
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 86 PFTLEMGNTEC-IHDP-DPRIRIERRSDYF 113
P TL G+ E + P + + F
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQF 37
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 24.6 bits (53), Expect = 9.4
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 31 YEQEEYNKEGIRWRHIEFSDNT 52
+ Y + GI H +D
Sbjct: 91 NLLDLYQQCGIITHHHPIADGG 112
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.440
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,984,068
Number of extensions: 102451
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 22
Length of query: 124
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 42
Effective length of database: 4,412,271
Effective search space: 185315382
Effective search space used: 185315382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)