RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4822
         (124 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 31/70 (44%), Positives = 45/70 (64%)

Query: 7   GFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 66
            FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448

Query: 67  CVLDDQANVG 76
            +LD+   + 
Sbjct: 449 SLLDEACLIA 458


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 68.2 bits (166), Expect = 3e-15
 Identities = 31/80 (38%), Positives = 44/80 (55%)

Query: 3   YKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 62
           +    FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP
Sbjct: 421 FDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKP 480

Query: 63  NGLLCVLDDQANVGFNNAQN 82
            G+  +L+++         +
Sbjct: 481 MGIFSILEEECMFPKATDTS 500


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 66.3 bits (161), Expect = 1e-14
 Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 3   YKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG- 60
           +++  FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E  
Sbjct: 393 FEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERP 452

Query: 61  -KPNGLLCVLDDQANVGFNNAQN 82
             P G+L +LD++         +
Sbjct: 453 TNPPGVLALLDEECWFPKATDTS 475


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 65.9 bits (160), Expect = 2e-14
 Identities = 33/70 (47%), Positives = 44/70 (62%)

Query: 3   YKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 62
           +    FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP
Sbjct: 419 FDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKP 478

Query: 63  NGLLCVLDDQ 72
            G+L +L+++
Sbjct: 479 MGILSILEEE 488


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.8 bits (157), Expect = 6e-14
 Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 3   YKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 62
           +++  FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K 
Sbjct: 382 FEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK- 440

Query: 63  NGLLCVLDDQANV 75
            G+L +LD++  +
Sbjct: 441 MGVLDLLDEECKM 453


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 61.2 bits (148), Expect = 8e-13
 Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 2/72 (2%)

Query: 3   YKLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG- 60
           +K+  FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G 
Sbjct: 414 FKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGR 473

Query: 61  KPNGLLCVLDDQ 72
           +P G+L +LD+Q
Sbjct: 474 QPPGILALLDEQ 485


>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 261

 Score = 25.6 bits (56), Expect = 2.1
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 29/124 (23%)

Query: 4   KLRGFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD--NTLCLQLVE-- 59
             RG EQ   N A + L+        + +      +G+    + F+D  NT   +L E  
Sbjct: 80  HPRGVEQ--RNKALDWLRGRGGAVGGEKDPPPPGTQGV----VYFADDDNTYSRELFEEM 133

Query: 60  -------GKPNGLL-------CVLDDQANVGFNNAQNEKSPFTLEMG----NTECIHDPD 101
                    P GL+         + D   VGF+ A     PF ++M         + D  
Sbjct: 134 RWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPSRPFPVDMAGFAVALPLLLDK- 192

Query: 102 PRIR 105
           P  +
Sbjct: 193 PNAQ 196


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 24.5 bits (53), Expect = 5.2
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 13  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 51
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,626
Number of extensions: 21670
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 12
Length of query: 124
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 49
Effective length of database: 1,377,846
Effective search space: 67514454
Effective search space used: 67514454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)