BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4825
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provides Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
 pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
           Provide Insight Into Regulation Of Acetylcholine
           Synthesis
          Length = 612

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/108 (50%), Positives = 74/108 (68%), Gaps = 3/108 (2%)

Query: 5   IQGEGIDLHLLGLRQ--TALEHNIPCELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPV 62
           I G  ID HLL LR+   A+   +P E+F DE Y +SN F LSTSQV   ++ F  YGPV
Sbjct: 494 ITGMAIDNHLLALRELARAMCAALP-EMFMDETYLMSNRFVLSTSQVPTTTEMFCCYGPV 552

Query: 63  VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNL 110
           VP+GYG  YNP+  TI+FC+S+F SC  TS++KFA +++ESL  + +L
Sbjct: 553 VPNGYGACYNPQPETILFCISSFHSCAATSSSKFAKAVEESLIDMRDL 600


>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
           Acetyltransferase In Complex With Carnitine And Coa
 pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
           Acetyltransferase In Complex With Carnitine And Coa
          Length = 618

 Score =  106 bits (264), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 1/110 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D  M +GPVV
Sbjct: 503 IRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMAFGPVV 562

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
           PDGYG  YNP EA I F VSA+ SC  T+AA+ A  L+++L  +  L+++
Sbjct: 563 PDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQN 612


>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
 pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
 pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
 pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
          Length = 596

 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 1/110 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D  M +GPVV
Sbjct: 482 IRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVV 541

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
           PDGYG  YNP EA I F VSA+ SC  T+AA+ A  L+++L  +  L+++
Sbjct: 542 PDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQN 591


>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
           Complex With Carnitine And Acetyl-Coa
 pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
           Complex With Carnitine And Acetyl-Coa
 pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
           Complex With Carnitine And Coa
 pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
           Complex With Carnitine And Coa
          Length = 599

 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D  M +GPVV
Sbjct: 485 IRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVMFFGPVV 544

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESR 114
           PDGYG  YNP EA I F VSA+ SC  T+AA+ A  L+++L  +  L+++ 
Sbjct: 545 PDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNH 595


>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
           Basis For Fatty Acyl Transfer
 pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
           Binding To Human Carnitine Acetyltransferase
          Length = 616

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 74/110 (67%), Gaps = 1/110 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D  M +GPVV
Sbjct: 490 IRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFFGPVV 549

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
           PDGYG  YNP EA I F +SA+ SC  T+AA+ A  L+++L  +  L++S
Sbjct: 550 PDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRALLQS 599


>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase
 pdb|1Q6X|B Chain B, Crystal Structure Of Rat Choline Acetyltransferase
          Length = 644

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEH-NIPCELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I G  ID HLL LR+ A +    P E+F DE Y +SN F LSTSQV    + F  YGPVV
Sbjct: 507 ITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCYGPVV 566

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 115
           P+GYG  YNP+   I FC+S+F SC  TS+ +FA ++  SL  + +L  SR+
Sbjct: 567 PNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQ 618


>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline
           Acetyltransferase
          Length = 639

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/112 (48%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEH-NIPCELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I G  ID HLL LR+ A +    P E+F DE Y +SN F LSTSQV    + F  YGPVV
Sbjct: 506 ITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCYGPVV 565

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 115
           P+GYG  YNP+   I FC+S+F SC  TS+ +FA ++  SL  + +L  SR+
Sbjct: 566 PNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQ 617


>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
 pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
           Acetyltransferase In Complex With Carnitine
          Length = 618

 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D    +GPVV
Sbjct: 503 IRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTSQVPAKTDCVGFFGPVV 562

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
           PDGYG  YNP EA I F VSA+ SC  T+AA+ A  L+++L  +  L+++
Sbjct: 563 PDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQN 612


>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
 pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
          Length = 596

 Score =  101 bits (251), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D    +GPVV
Sbjct: 482 IRGEAFDRHLLGLKLQAIEDLVSXPDIFXDTSYAIAXHFNLSTSQVPAKTDCVXFFGPVV 541

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESL 104
           PDGYG  YNP EA I F VSA+ SC  T+AA+ A  L+++L
Sbjct: 542 PDGYGICYNPXEAHINFSVSAYNSCAETNAARXAHYLEKAL 582


>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
           Carnitine Acetyltransferase In Complex With
           Hexanoylcarnitine And Coa
 pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
           Carnitine Acetyltransferase In Complex With
           Hexanoylcarnitine And Coa
          Length = 599

 Score =  100 bits (249), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 73/111 (65%), Gaps = 1/111 (0%)

Query: 5   IQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVV 63
           I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LST+QV  K+D    +GPVV
Sbjct: 485 IRGEAFDRHLLGLKLQAIEDLVSMPDIFMDTSYAIAMHFNLSTAQVPAKTDCVGFFGPVV 544

Query: 64  PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESR 114
           PDGYG  YNP EA I F VSA+ SC  T+AA+ A  L+++L  +  L+++ 
Sbjct: 545 PDGYGICYNPMEAHINFSVSAYNSCAETNAARMAHYLEKALLDMRTLLQNH 595


>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Space Group C2221
 pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Space Group C2221
 pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Space Group P43212
          Length = 653

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 3   ENIQGEGIDLHLLGLR--QTALEHNIPCELFQDEAYKLSNYFKLSTSQVACKSDSFMGYG 60
           E   G+G D HL  LR   TA   N+P EL+ D AY+  N+  LSTS +   + S  G+ 
Sbjct: 540 EAAXGQGFDRHLYALRYLATARGLNLP-ELYLDPAYQQXNHNILSTSTLNSPAVSLGGFA 598

Query: 61  PVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKIST 118
           PVVPDG+G +Y   +  I   VS++      +A +F   + + L  I + +E + I T
Sbjct: 599 PVVPDGFGIAYAVHDDWIGCNVSSYSG---RNAREFLHCVQKCLEDIFDALEGKAIKT 653


>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Complex With Antidiabetic Drug St1326
 pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Complex With R-3-(Hexadecanoylamino)-4-
           (Trimethylazaniumyl)butanoate
 pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Complex With R-3-(Hexadecanoylamino)-4-
           (Trimethylazaniumyl)butanoate
          Length = 653

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 3   ENIQGEGIDLHLLGLR--QTALEHNIPCELFQDEAYKLSNYFKLSTSQVACKSDSFMGYG 60
           E   G+G D HL  LR   TA   N+P EL+ D AY+  N+  LSTS +   + S  G+ 
Sbjct: 540 EAAMGQGFDRHLYALRYLATARGLNLP-ELYLDPAYQQMNHNILSTSTLNSPAVSLGGFA 598

Query: 61  PVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKIST 118
           PVVPDG+G +Y   +  I   VS++      +A +F   + + L  I + +E + I T
Sbjct: 599 PVVPDGFGIAYAVHDDWIGCNVSSYSG---RNAREFLHCVQKCLEDIFDALEGKAIKT 653


>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
 pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
          Length = 626

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 6/116 (5%)

Query: 3   ENIQGEGIDLHLLGLR--QTALEHNIPCELFQDEAYKLSNYFKLSTSQVACKSDSFMGYG 60
           E   G+G D HL  LR   TA   N+P EL+ D AY+  N+  LSTS +   + S  G+ 
Sbjct: 515 EATMGQGFDRHLYALRYLATARGLNLP-ELYLDPAYQQMNHNILSTSTLNSPAVSLGGFA 573

Query: 61  PVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKI 116
           PVVPDG+G +Y   +  I   VS++      +A +F   + + L  I + +E + I
Sbjct: 574 PVVPDGFGIAYAVHDDWIGCNVSSYSG---RNAREFLHCVQKCLEDIFDALEGKAI 626


>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
 pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
          Length = 612

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 19/124 (15%)

Query: 1   MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSN---YFKLSTSQVACKSDSF 56
           M +   G+G D HLLGL   A E  +P  ELF+D  +  S     F LSTS V       
Sbjct: 494 MKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLV------- 546

Query: 57  MGY----GPVVP---DGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGN 109
            GY    G VVP   +GYG  Y+ R+   V   S+++SC  T A K    +  +   +  
Sbjct: 547 -GYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQ 605

Query: 110 LVES 113
           L+ +
Sbjct: 606 LMNT 609


>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
 pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
           Octanoyltransferase
          Length = 612

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 19/124 (15%)

Query: 1   MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSN---YFKLSTSQVACKSDSF 56
           M +   G+G D HLLGL   A E  +P  ELF+D  +  S     F LSTS V       
Sbjct: 494 MKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLV------- 546

Query: 57  MGY----GPVVP---DGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGN 109
            GY    G VVP   +GYG  Y+ R+   V   S+++SC  T A K    +  +   +  
Sbjct: 547 -GYLRVQGVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQ 605

Query: 110 LVES 113
           L+ +
Sbjct: 606 LMNT 609


>pdb|1XL7|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
 pdb|1XL7|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
 pdb|1XL8|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
           In Complex With Octanoylcarnitine
 pdb|1XL8|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
           In Complex With Octanoylcarnitine
          Length = 612

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 19/106 (17%)

Query: 6   QGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSN---YFKLSTSQVACKSDSFMGY-- 59
            G+G D HLLGL   A E  +P  ELF+D  +  S     F LSTS V        GY  
Sbjct: 499 HGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLV--------GYLR 550

Query: 60  --GPVVP---DGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSL 100
             G VVP   +GYG  Y+ R+   V   S+++SC  T A K    +
Sbjct: 551 VQGVVVPXVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQXI 596


>pdb|2EQX|A Chain A, Solution Structure Of The Back Domain Of Kelch Repeat And
           Btb Domain-Containing Protein 4
          Length = 105

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 62  VVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLV 111
           ++ DG  CS NP EA     + A+ +        FA SL  SL  IG  V
Sbjct: 60  IISDGVPCSQNPTEA-----IEAWINFNKEEREAFAESLRTSLKEIGENV 104


>pdb|2J5L|A Chain A, Structure Of A Plasmodium Falciparum Apical Membrane
           Antigen 1-Fab F8.12.19 Complex
          Length = 581

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 22  LEHNIPCELFQDEAYK 37
           +EHN PC L++DE  K
Sbjct: 405 VEHNFPCSLYKDEIKK 420


>pdb|1I60|A Chain A, Structural Genomics, Ioli Protein
 pdb|1I6N|A Chain A, 1.8 A Crystal Structure Of Ioli Protein With A Binding
           Zinc Atom
          Length = 278

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 7   GEG---IDLHLLGLRQTALEHNIPCELFQDEAYKLS 39
           G+G   +D HL  L++      +  ELF+ E YKL+
Sbjct: 221 GQGAIDLDAHLSALKEIGFSDVVSVELFRPEYYKLT 256


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,393,997
Number of Sequences: 62578
Number of extensions: 121998
Number of successful extensions: 293
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 22
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)