Query psy4825
Match_columns 122
No_of_seqs 111 out of 725
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 18:44:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nm8_A Carnitine O-acetyltrans 100.0 5.8E-39 2E-43 268.7 10.7 115 1-115 486-601 (616)
2 1t1u_A Choline O-acetyltransfe 100.0 5.4E-39 1.9E-43 269.8 10.2 114 1-114 502-616 (639)
3 1xl7_A COT, peroxisomal carnit 100.0 8.2E-38 2.8E-42 261.6 11.9 113 1-114 494-610 (612)
4 2deb_A CPT II, carnitine O-pal 100.0 2E-37 6.9E-42 260.7 11.1 114 1-117 538-652 (653)
5 3qwm_A Iqsec1, IQ motif and SE 72.8 9.4 0.00032 25.9 5.6 46 62-110 80-127 (140)
6 2gjh_A Designed protein; oblig 66.1 6.9 0.00024 22.2 3.2 29 76-107 2-30 (62)
7 3dwa_A SUBB, subtilase cytotox 57.2 7.9 0.00027 25.8 2.7 53 7-63 54-114 (126)
8 2vx8_A Nucleoporin-like protei 42.0 45 0.0016 22.9 4.8 45 63-108 89-133 (169)
9 4b93_A Vesicle-associated memb 38.9 62 0.0021 22.4 5.2 41 63-104 47-87 (189)
10 1qys_A TOP7; alpha-beta, novel 37.8 35 0.0012 21.1 3.3 29 76-107 46-74 (106)
11 1rpu_A 19 kDa protein; RNAI, p 36.5 84 0.0029 21.5 5.3 54 55-120 101-154 (172)
12 3bw6_A Synaptobrevin homolog Y 35.0 81 0.0028 20.8 5.1 41 63-103 64-104 (144)
13 2nut_C Vesicle-trafficking pro 33.7 61 0.0021 22.4 4.5 42 64-106 57-98 (196)
14 1r9f_A Core protein P19; prote 31.9 87 0.003 20.6 4.6 55 55-121 79-133 (136)
15 2rrf_A Zinc finger FYVE domain 31.2 1E+02 0.0034 20.9 5.0 75 41-115 55-137 (141)
16 3leq_A Uncharacterized protein 29.9 1.1E+02 0.0039 19.6 5.4 49 63-115 76-124 (126)
17 4afi_A AP-3 complex subunit de 29.3 1.1E+02 0.0039 21.0 5.2 43 64-107 100-142 (173)
18 2f5g_A Transposase, putative; 26.7 1.2E+02 0.0042 19.0 5.2 34 69-105 52-85 (133)
19 3bvp_A INT, TP901-1 integrase; 24.7 46 0.0016 21.4 2.4 30 6-35 19-49 (138)
20 2vjv_A Transposase ORFA; DNA-b 24.6 1.6E+02 0.0053 19.5 5.2 33 69-104 60-92 (159)
21 3c6v_A Probable tautomerase/de 24.0 95 0.0032 21.0 4.0 48 58-105 63-112 (161)
22 3oak_C Transcription elongatio 23.9 63 0.0022 16.2 2.2 16 98-113 4-19 (31)
23 2fyx_A Transposase, putative; 21.3 1.7E+02 0.0059 18.8 5.3 34 69-105 62-95 (143)
24 1q4k_B Serine/threonine-protei 20.9 57 0.002 24.1 2.5 15 66-80 76-90 (259)
25 4e17_B Catenin alpha-1; four h 20.7 76 0.0026 16.9 2.2 19 92-110 16-34 (40)
26 3kye_A Roadblock/LC7 domain, R 20.2 2.1E+02 0.0071 19.3 5.7 50 63-116 98-147 (150)
No 1
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=100.00 E-value=5.8e-39 Score=268.70 Aligned_cols=115 Identities=45% Similarity=0.763 Sum_probs=110.1
Q ss_pred CcccccCCchhHHHHHHHHHHHhCCCCc-ccccchhhhhcCCceEeecCCCCCCcCccccCCccCCceeEEeeecCCeEE
Q psy4825 1 MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVVPDGYGCSYNPREATIV 79 (122)
Q Consensus 1 ~~~a~~G~G~DRHL~aL~~~a~~~~~~~-~lF~d~~~~~~~~~~LSTS~~~~~~~~~~gfgp~~~dGyGi~Y~i~~d~i~ 79 (122)
|++|+.|+|||||||||+++|++.|.++ +||.||+|.++++|.|||||++++....+|||||+||||||+|+|.+|+|.
T Consensus 486 ~~~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~dp~~~~~~~~~LSTSq~~~~~~~~~gfgPv~~dGyGi~Y~i~~~~i~ 565 (616)
T 1nm8_A 486 TDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFFGPVVPDGYGVCYNPMEAHIN 565 (616)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHTTCCCCHHHHSHHHHHHTCCSEEEEECCCSSSCEEECCCSSTTCEEEEEEECSSCEE
T ss_pred HHHHHhccChHHHHHHHHHHHHHcCCCCcccccCchhhhcCCCEEeecCCCCCccCceEEecCCCCeeEEEEEecCCeEE
Confidence 4789999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcCc
Q psy4825 80 FCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 115 (122)
Q Consensus 80 f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~~ 115 (122)
|+||+|++|+.+++++|+++|++||.||++||+..+
T Consensus 566 f~iss~~s~~~t~~~rf~~~L~~al~dm~~ll~~~~ 601 (616)
T 1nm8_A 566 FSLSAYNSCAETNAARLAHYLEKALLDMRALLQSHP 601 (616)
T ss_dssp EEEEEETTSTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEEeCCCCccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998654
No 2
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=100.00 E-value=5.4e-39 Score=269.76 Aligned_cols=114 Identities=46% Similarity=0.752 Sum_probs=110.0
Q ss_pred CcccccCCchhHHHHHHHHHHHhCCCCc-ccccchhhhhcCCceEeecCCCCCCcCccccCCccCCceeEEeeecCCeEE
Q psy4825 1 MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVVPDGYGCSYNPREATIV 79 (122)
Q Consensus 1 ~~~a~~G~G~DRHL~aL~~~a~~~~~~~-~lF~d~~~~~~~~~~LSTS~~~~~~~~~~gfgp~~~dGyGi~Y~i~~d~i~ 79 (122)
|++|+.|+|||||||||++++++.|.++ +||.||+|.++++|.|||||++++....+|||||+||||||+|+|.+|+|.
T Consensus 502 ~~~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~dp~~~~~~~~~LSTSq~~~~~~~~~gfgPv~~dGyGi~Y~i~~~~i~ 581 (639)
T 1t1u_A 502 TVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCYGPVVPNGYGACYNPQPEAIT 581 (639)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTTCSCCHHHHSHHHHHHTCCSEEEEECCCSSSEEEECCCSSTTCEEEEEEECSSCEE
T ss_pred HHHHHcCCChHHHHHHHHHHHHhcCCCCcccccCchhhhhCCCEEEecCCCCCccccceEcccCCCceEEEEEEcCCeEE
Confidence 4789999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcC
Q psy4825 80 FCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESR 114 (122)
Q Consensus 80 f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~ 114 (122)
|+||+|++|+.+++++|+++|++||.||++||+..
T Consensus 582 f~iss~~s~~~t~~~rf~~~L~~al~dm~~ll~~~ 616 (639)
T 1t1u_A 582 FCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSR 616 (639)
T ss_dssp EEEEEETTSTTCCHHHHHHHHHHHHHHHHHHHCC-
T ss_pred EEEEeCCCCcccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999855
No 3
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=100.00 E-value=8.2e-38 Score=261.59 Aligned_cols=113 Identities=33% Similarity=0.483 Sum_probs=108.1
Q ss_pred CcccccCCchhHHHHHHHHHHHhCCCCc-ccccchhhhh---cCCceEeecCCCCCCcCccccCCccCCceeEEeeecCC
Q psy4825 1 MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKL---SNYFKLSTSQVACKSDSFMGYGPVVPDGYGCSYNPREA 76 (122)
Q Consensus 1 ~~~a~~G~G~DRHL~aL~~~a~~~~~~~-~lF~d~~~~~---~~~~~LSTS~~~~~~~~~~gfgp~~~dGyGi~Y~i~~d 76 (122)
|++|+.|+||||||+||+++|++.|.++ +||.||+|.+ +++|.|||||+ +.....+|||||+||||||+|+|.+|
T Consensus 494 ~~~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~d~~~~~sg~~~~~~LSTS~~-~~~~~~~gfgPv~~dGyGi~Y~i~~~ 572 (612)
T 1xl7_A 494 MKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLV-GYLRVQGVVVPMVHNGYGFFYHIRDD 572 (612)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHTTCCCCGGGTSHHHHHTTTTTCCSEEEEEC-CSSSCCCBCCCSSTTCEEEEEEEETT
T ss_pred HHHHHhccchHHHHHHHHHHHHHcCCCCchhhcChhhhcccCCCCCEEecCCC-CCCCCCcEEeccCCCeEEEEEEEcCC
Confidence 4789999999999999999999999998 9999999999 99999999999 67789999999999999999999999
Q ss_pred eEEEEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcC
Q psy4825 77 TIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESR 114 (122)
Q Consensus 77 ~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~ 114 (122)
+|.|+||+|++|+.+++++|+++|++||.||++||+..
T Consensus 573 ~i~f~iss~~s~~~t~~~rf~~~L~~al~dm~~ll~~~ 610 (612)
T 1xl7_A 573 RFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTA 610 (612)
T ss_dssp EEEEEEEEETTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999753
No 4
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=100.00 E-value=2e-37 Score=260.71 Aligned_cols=114 Identities=33% Similarity=0.497 Sum_probs=109.1
Q ss_pred CcccccCCchhHHHHHHHHHHHhCCCCc-ccccchhhhhcCCceEeecCCCCCCcCccccCCccCCceeEEeeecCCeEE
Q psy4825 1 MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNYFKLSTSQVACKSDSFMGYGPVVPDGYGCSYNPREATIV 79 (122)
Q Consensus 1 ~~~a~~G~G~DRHL~aL~~~a~~~~~~~-~lF~d~~~~~~~~~~LSTS~~~~~~~~~~gfgp~~~dGyGi~Y~i~~d~i~ 79 (122)
|++|+.|+||||||||||+++++.|+++ +||.||+|.++++|.|||||++++.+..+|||||+||||||+|+|.+|+|.
T Consensus 538 ~k~a~~G~G~DRHL~gL~~~a~~~g~~~P~lF~Dp~y~~~~~~~LSTS~~~~~~~~~~gfgPv~~dGyGi~Y~i~~~~i~ 617 (653)
T 2deb_A 538 TKEAAMGQGFDRHLYALRYLATARGLNLPELYLDPAYQQMNHNILSTSTLNSPAVSLGGFAPVVPDGFGIAYAVHDDWIG 617 (653)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHTTCCCCGGGGSHHHHHHTSCSEEEEECCCTTEEEEECCCSSTTCEEEEEEECSSCEE
T ss_pred HHHHHhccchHHHHHHHHHHHHHcCCCCchhhcChhhhhhCCcEEeecCCCCCccccceeeccCCCceEEEEEecCCeEE
Confidence 4789999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcCccc
Q psy4825 80 FCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKIS 117 (122)
Q Consensus 80 f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~~~~ 117 (122)
|+||+|+ .+++++|+++|++||.||++||+..++.
T Consensus 618 f~iSs~~---~t~~~~F~~~L~~al~dm~~ll~~~~~~ 652 (653)
T 2deb_A 618 CNVSSYS---GRNAREFLHCVQKCLEDIFDALEGKAIK 652 (653)
T ss_dssp EEEEECT---TSCHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred EEEEeCC---CCCHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 9999997 6899999999999999999999987654
No 5
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=72.82 E-value=9.4 Score=25.95 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=34.5
Q ss_pred ccCCceeEEeeecC--CeEEEEEEecCCCCCccHHHHHHHHHHHHHHHHHH
Q psy4825 62 VVPDGYGCSYNPRE--ATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNL 110 (122)
Q Consensus 62 ~~~dGyGi~Y~i~~--d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~~l 110 (122)
.+|+|+-|.-.... ....+.+++.. ..+-++|.+.|+.|+.++.++
T Consensus 80 ~~p~~~~l~s~~~G~~~k~~i~~~A~s---~~ER~rwi~dL~esI~e~~em 127 (140)
T 3qwm_A 80 YYPNGIRLTSSVPGADIKVLINFNAPN---PQDRKKFTDDLRESIAEVQEM 127 (140)
T ss_dssp SCTTEEEEEECCTTSCCEEEEEEECSS---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCcceEEEEEECCC---HHHHHHHHHHHHHHHHHHHHH
Confidence 37888888766633 46666666652 468899999999999998765
No 6
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=66.06 E-value=6.9 Score=22.17 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=22.7
Q ss_pred CeEEEEEEecCCCCCccHHHHHHHHHHHHHHH
Q psy4825 76 ATIVFCVSAFKSCLTTSAAKFATSLDESLSAI 107 (122)
Q Consensus 76 d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~ 107 (122)
+++.++|+++. ...+++|+..|.+.+.++
T Consensus 2 ervrisitart---kkeaekfaailikvfael 30 (62)
T 2gjh_A 2 ERVRISITART---KKEAEKFAAILIKVFAEL 30 (62)
T ss_dssp CEEEEEEECSS---HHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEEEecc---hhHHHHHHHHHHHHHHHh
Confidence 47889999873 568999999888776654
No 7
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=57.16 E-value=7.9 Score=25.85 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHHHHhCCCC--c----ccccchhhhhc--CCceEeecCCCCCCcCccccCCcc
Q psy4825 7 GEGIDLHLLGLRQTALEHNIP--C----ELFQDEAYKLS--NYFKLSTSQVACKSDSFMGYGPVV 63 (122)
Q Consensus 7 G~G~DRHL~aL~~~a~~~~~~--~----~lF~d~~~~~~--~~~~LSTS~~~~~~~~~~gfgp~~ 63 (122)
++|||-+|--.|.-- -.|.+ + .+++||.|.+. .+-.+.-|++++ ...||||..
T Consensus 54 ~~~Fd~~~~~A~YyY-tTG~~vrvY~~~nVWtdp~F~~~fS~NeLv~istCss---~~~C~GP~~ 114 (126)
T 3dwa_A 54 GASFSTLYNQALYFY-TTGQPVRIYYEPGVWTYPPFVKALTSNALVGLSTCTT---STECFGPDR 114 (126)
T ss_dssp GGGHHHHHHHHHHHH-HHCCEEEEEEETTCCCCHHHHHHSCSCEEEEEEEBSS---SSCBSSCCC
T ss_pred cccHHHHHHHhHhhh-hcCCcEEEEEecCcccChhHhhhhcccceEEEecccC---CCeeeCCcc
Confidence 578888887777643 23444 2 68999999775 566677777765 366899974
No 8
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=41.96 E-value=45 Score=22.93 Aligned_cols=45 Identities=13% Similarity=0.140 Sum_probs=32.3
Q ss_pred cCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHHHH
Q psy4825 63 VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIG 108 (122)
Q Consensus 63 ~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~ 108 (122)
..++|=++|.+.+ .+.|.+-+-++.|..-+-.|.+.|.+-+....
T Consensus 89 ~~~~y~fHyl~~n-gl~yl~I~D~~yp~r~AF~fLedI~~eF~~~y 133 (169)
T 2vx8_A 89 SHGNYLFHYICQD-RIVYLCITDDDFERSRAFSFLNEVKKRFQTTY 133 (169)
T ss_dssp EETTEEEEEEEET-TEEEEEEEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEEEC-CEEEEEEEccccchHHHHHHHHHHHHHHHHHh
Confidence 3478999999964 57776666777777677777777777665544
No 9
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=38.88 E-value=62 Score=22.42 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=28.1
Q ss_pred cCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHH
Q psy4825 63 VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESL 104 (122)
Q Consensus 63 ~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al 104 (122)
..++|-++|.+.++ +.|.+-+-++.|..-+-.|.+.|.+-+
T Consensus 47 ~~~~y~fHyl~~~g-l~yl~i~d~~yp~r~af~fL~~i~~eF 87 (189)
T 4b93_A 47 SHGNYLFHYICQDR-IVYLCITDDDFERSRAFSFLNEVKKRF 87 (189)
T ss_dssp EETTEEEEEEEETT-EEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEEEeCC-eEEEEEEcCccCHHHHHHHHHHHHHHH
Confidence 45679999988776 555555566777666766776665554
No 10
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=37.76 E-value=35 Score=21.13 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=22.8
Q ss_pred CeEEEEEEecCCCCCccHHHHHHHHHHHHHHH
Q psy4825 76 ATIVFCVSAFKSCLTTSAAKFATSLDESLSAI 107 (122)
Q Consensus 76 d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~ 107 (122)
.++.++|+++. ...+++|+..|.+.+.++
T Consensus 46 krvrisitart---kkeaekfaailikvfael 74 (106)
T 1qys_A 46 KRVRISITART---KKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp SEEEEEEECSS---HHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEecc---hhHHHHHHHHHHHHHHHh
Confidence 47899999873 568999999887776654
No 11
>1rpu_A 19 kDa protein; RNAI, protein-RNA complex, RNA double helix, RNA length recognition, RNA binding protein/RNA complex; 2.50A {Carnation italian ringspot virus} SCOP: d.255.1.1
Probab=36.48 E-value=84 Score=21.45 Aligned_cols=54 Identities=17% Similarity=0.374 Sum_probs=35.8
Q ss_pred CccccCCccCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcCccchhc
Q psy4825 55 SFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKISTEN 120 (122)
Q Consensus 55 ~~~gfgp~~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~~~~~~~ 120 (122)
..+||.. .|+.|.|.=-.+.++|+.- ..-.++++ +-|.+.-+++|+-.+...|.
T Consensus 101 RF~G~~Q-----igCTYSIRfRG~svT~SGG----SrtLq~L~---eMAiR~K~~~LQltp~evE~ 154 (172)
T 1rpu_A 101 RFLGANQ-----VGCTYSIRFRGVSVTISGG----SRTLQHLC---EMAIRSKQELLQLTPVEVES 154 (172)
T ss_dssp TTCCSSC-----CEEEEEEEETTEEEEEEEE----GGGHHHHH---HHHHHHHHHHHTSSCSCC--
T ss_pred hhccccc-----cceeEEEEEeeEEEEecCC----cHHHHHHH---HHHHHHHHHHhccCcHHhhc
Confidence 5556654 7999999977788888875 34455444 44566666777777766554
No 12
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=34.96 E-value=81 Score=20.79 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=28.7
Q ss_pred cCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHH
Q psy4825 63 VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDES 103 (122)
Q Consensus 63 ~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~a 103 (122)
..++|=++|.+.+|.|.+.+-+-++.|..-+-.|.+.|.+-
T Consensus 64 ~~~~y~fH~~~~~~gl~~l~i~D~~yp~rvAF~~L~~i~~e 104 (144)
T 3bw6_A 64 EEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDE 104 (144)
T ss_dssp EETTEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred EeCCEEEEEEEecCCEEEEEEECCCCChhHHHHHHHHHHHH
Confidence 45678899996777788877777777766666665554433
No 13
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=33.69 E-value=61 Score=22.42 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=27.6
Q ss_pred CCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHH
Q psy4825 64 PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSA 106 (122)
Q Consensus 64 ~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~ 106 (122)
.++|-++|.+.++ +.|.+-+-++.|..-+-.|.+.|.+-+..
T Consensus 57 ~~~y~fhy~~~~g-l~~l~i~d~~yp~r~af~fL~~i~~~F~~ 98 (196)
T 2nut_C 57 AGAMTFHYIIEQG-VCYLVLCEAAFPKKLAFAYLEDLHSEFDE 98 (196)
T ss_dssp ETTEEEEEEEETT-EEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred eCCEEEEEEeCCC-eEEEEEEcCCcchHHHHHHHHHHHHHHHH
Confidence 4678889888655 66555556667766677777766654443
No 14
>1r9f_A Core protein P19; protein-RNA complex, dimer, double helix, viral protein/RNA complex; 1.85A {Tomato bushy stunt virus} SCOP: d.255.1.1
Probab=31.95 E-value=87 Score=20.59 Aligned_cols=55 Identities=18% Similarity=0.414 Sum_probs=33.4
Q ss_pred CccccCCccCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcCccchhcc
Q psy4825 55 SFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKISTENR 121 (122)
Q Consensus 55 ~~~gfgp~~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~~~~~~~~ 121 (122)
..+|+.. .|+.|.|.=-.+.++|+.. ..-.++++ +-|.+.-+++|+-.+...|.+
T Consensus 79 RF~G~~Q-----igCTYSIR~RGvs~T~SGG----SrtLq~L~---eMAiR~K~~~LQ~a~~evE~~ 133 (136)
T 1r9f_A 79 RFFGFDQ-----IGCTYSIRFRGVSITVSGG----SRTLQHLC---EMAIRSKQEMLQMAPIEVESN 133 (136)
T ss_dssp TTCCSSC-----CEEEEEEEETTEEEEEEEE----GGGHHHHH---HHHHHHHHHHHTCC-------
T ss_pred Hhccccc-----cceeEEEEEeeEEEEEcCC----cHHHHHHH---HHHHHHHHHHhccCcHHhhcc
Confidence 5566654 7999999977788888875 34455544 445666667777777766543
No 15
>2rrf_A Zinc finger FYVE domain-containing protein 21; zfyve21, PH, unknown function; NMR {Homo sapiens}
Probab=31.22 E-value=1e+02 Score=20.87 Aligned_cols=75 Identities=7% Similarity=0.108 Sum_probs=47.8
Q ss_pred CceEeecCCCCCCcCccccCC----ccCCceeEEeeecCCe--EEEEEEecCC--CCCccHHHHHHHHHHHHHHHHHHHh
Q psy4825 41 YFKLSTSQVACKSDSFMGYGP----VVPDGYGCSYNPREAT--IVFCVSAFKS--CLTTSAAKFATSLDESLSAIGNLVE 112 (122)
Q Consensus 41 ~~~LSTS~~~~~~~~~~gfgp----~~~dGyGi~Y~i~~d~--i~f~vss~~s--~~~~~~~~f~~~L~~al~~~~~ll~ 112 (122)
++.+--|++.+-....-|+.| ..+-|+=|.|....+. -.+.++.-.+ +....+..+..++++|..-+++-=+
T Consensus 55 h~eIels~I~~vqiL~eg~~~ggg~~rasGm~l~Yk~~g~~~~~ql~lt~~~d~~~~kk~s~aWlaAm~KA~KllyEsr~ 134 (141)
T 2rrf_A 55 HYEIEIVHISTVQILTEGFPPGGGNARATGMFLQYTVPGTEGVTQLKLTVVEDVTVGRRQAVAWLVAMHKAAKLLYESRD 134 (141)
T ss_dssp EEEEETTTCCCEECCCCSSCSSSSSCCCSCCEEEECCTTSSSCEEEEEECCCSSSCCHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCcEEeeeeeEEEEeccCCCCCCCcceeeEEEEEeeCCCccceeEEEEeeccccCcchhhhHHHHHHHHHHHHHHHHhcc
Confidence 455555666655444446655 3777888999987532 3355554432 2244678899999999987776544
Q ss_pred cCc
Q psy4825 113 SRK 115 (122)
Q Consensus 113 ~~~ 115 (122)
+++
T Consensus 135 ~~~ 137 (141)
T 2rrf_A 135 QSG 137 (141)
T ss_dssp SSS
T ss_pred cCC
Confidence 443
No 16
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=29.87 E-value=1.1e+02 Score=19.61 Aligned_cols=49 Identities=10% Similarity=0.125 Sum_probs=31.7
Q ss_pred cCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcCc
Q psy4825 63 VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 115 (122)
Q Consensus 63 ~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~~ 115 (122)
.++||-+-+.+.++.+...++.. ..+.-.....+++....+.++|..++
T Consensus 76 ~~~G~l~v~~ag~~a~L~vla~~----~a~lG~v~~em~~~v~ri~~~L~~~~ 124 (126)
T 3leq_A 76 MGKGYLILTAAGPGAHLVVLTRQ----GADVGVVAYQMNMLVKKIGEHLSAPP 124 (126)
T ss_dssp CSSCEEEEEESSTTEEEEEEECT----TCCHHHHHHHHHHHHHHC--------
T ss_pred eCCCEEEEEEeCCCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHHhcCCcC
Confidence 47789999999888665555433 46888888899999999988887654
No 17
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=29.28 E-value=1.1e+02 Score=20.96 Aligned_cols=43 Identities=14% Similarity=0.182 Sum_probs=29.6
Q ss_pred CCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHHH
Q psy4825 64 PDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAI 107 (122)
Q Consensus 64 ~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~ 107 (122)
.++|=++|.+.++ +.|.+-+-++.|..-+-.|.+.|.+-+...
T Consensus 100 ~~~y~fHyl~~dg-l~yl~i~D~~~~rr~aF~FLedI~~eF~~~ 142 (173)
T 4afi_A 100 HGNYLFHYICQDR-IVYLCITDDDFERSRAFSFLNEVKKRFQTT 142 (173)
T ss_dssp ETTEEEEEEEETT-EEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred ECCEEEEEEEECC-EEEEEEECCccChhHHHHHHHHHHHHHHHH
Confidence 4679999999766 555555566666667777777777666543
No 18
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=26.69 E-value=1.2e+02 Score=19.02 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=26.1
Q ss_pred EEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHH
Q psy4825 69 CSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLS 105 (122)
Q Consensus 69 i~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~ 105 (122)
+.|.+.||.|.+.|+... ..+..++.+.|.....
T Consensus 52 ~a~~impdHvHllv~~~~---~~~ls~~~~~lK~~ss 85 (133)
T 2f5g_A 52 IALEVMPDHIHLFVNCPP---RYAPSYLANYFKGKSA 85 (133)
T ss_dssp EEEEEETTEEEEEEECCT---TSCHHHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEEEecC---CccHHHHHHHHhhHhH
Confidence 688999999999998863 4577777777766543
No 19
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=24.74 E-value=46 Score=21.40 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=25.4
Q ss_pred cCCchhHHHHHHHHHHHhCCCCc-ccccchh
Q psy4825 6 QGEGIDLHLLGLRQTALEHNIPC-ELFQDEA 35 (122)
Q Consensus 6 ~G~G~DRHL~aL~~~a~~~~~~~-~lF~d~~ 35 (122)
.|.++++..-.|+..+...|.++ .+|.|.+
T Consensus 19 ~~~sl~~Q~~~l~~~a~~~g~~~~~~~~D~g 49 (138)
T 3bvp_A 19 EGFSIDEQIDRLTKYAEAMGWQVSDTYTDAG 49 (138)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCEEEEEEEEET
T ss_pred cCCCHHHHHHHHHHHHHHCCCEEEEEEEeCC
Confidence 46689999999999888888887 8898864
No 20
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=24.57 E-value=1.6e+02 Score=19.47 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=25.7
Q ss_pred EEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHH
Q psy4825 69 CSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESL 104 (122)
Q Consensus 69 i~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al 104 (122)
+.|.+.+|.|.+.|+.. |..+..++.+.|...-
T Consensus 60 ~a~~vmpDHVHlLv~~~---p~~slS~~~~~lK~~s 92 (159)
T 2vjv_A 60 IEMQTDKDHIHILADID---PSFGVMKFIKTAKGRS 92 (159)
T ss_dssp EEEEEETTEEEEEEECC---TTTCHHHHHHHHHHHH
T ss_pred EEEeecCCcEEEEEecC---CCcchhHHHhhccccc
Confidence 68899999999999876 3456777777776654
No 21
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=23.99 E-value=95 Score=21.02 Aligned_cols=48 Identities=8% Similarity=-0.023 Sum_probs=28.9
Q ss_pred ccCCccCCceeEEeeecCCeEEEEE--EecCCCCCccHHHHHHHHHHHHH
Q psy4825 58 GYGPVVPDGYGCSYNPREATIVFCV--SAFKSCLTTSAAKFATSLDESLS 105 (122)
Q Consensus 58 gfgp~~~dGyGi~Y~i~~d~i~f~v--ss~~s~~~~~~~~f~~~L~~al~ 105 (122)
-|-++.++.|+++-...++-+.+.| ++...-+...-++|.+.|.+.|.
T Consensus 63 ~i~e~~~~~~~~gg~~~~~~v~I~I~~~a~~gRt~eqK~~l~~~l~~~L~ 112 (161)
T 3c6v_A 63 HFIEQPAGTSFIGGEQHPNFVALTIYHLARTMTSDEQRQGFLKRIDAFLT 112 (161)
T ss_dssp EEEECCTTSEEETTEECSSEEEEEEEEETTSCCSHHHHHHHHHHHHHHHH
T ss_pred EEEEeCccceeECCcccCCEEEEEEEeccCCCCCHHHHHHHHHHHHHHHH
Confidence 4556667888888888888888999 43432112223345555555443
No 22
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=23.85 E-value=63 Score=16.21 Aligned_cols=16 Identities=6% Similarity=0.314 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhc
Q psy4825 98 TSLDESLSAIGNLVES 113 (122)
Q Consensus 98 ~~L~~al~~~~~ll~~ 113 (122)
.+++.|+.+|++++..
T Consensus 4 ~~~~~aledm~eiFGd 19 (31)
T 3oak_C 4 THMSDKIDEMYDIFGD 19 (31)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHhCC
Confidence 4688999999998853
No 23
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=21.34 E-value=1.7e+02 Score=18.79 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=26.5
Q ss_pred EEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHH
Q psy4825 69 CSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLS 105 (122)
Q Consensus 69 i~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~ 105 (122)
+.|.+.||.|.+.|+... ..+..++.+.|.....
T Consensus 62 ~a~~vmpDHvHlLv~~~p---~~~ls~~~~~lK~~ss 95 (143)
T 2fyx_A 62 VALEVMPDYVHLLLGATP---QHVIPDFVKALKGASA 95 (143)
T ss_dssp EEEEECSSEEEEEEEECT---TCCHHHHHHHHHHHHH
T ss_pred EEEEecCCeEEEEEecCC---CccHHHHHHHHHhhcc
Confidence 689999999999999873 4577777777776543
No 24
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel beta sheet with one alpha helix, transferase; HET: TPO; 2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Probab=20.94 E-value=57 Score=24.11 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=8.0
Q ss_pred ceeEEeeecCCeEEE
Q psy4825 66 GYGCSYNPREATIVF 80 (122)
Q Consensus 66 GyGi~Y~i~~d~i~f 80 (122)
=||++|.+.++++-+
T Consensus 76 KYG~GYqLsdgsvGv 90 (259)
T 1q4k_B 76 KYGLGYQLCDNSVGV 90 (259)
T ss_dssp TTEEEEEETTSCEEE
T ss_pred ccceeEEecCCcEEE
Confidence 455555555555443
No 25
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=20.72 E-value=76 Score=16.86 Aligned_cols=19 Identities=5% Similarity=0.030 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q psy4825 92 SAAKFATSLDESLSAIGNL 110 (122)
Q Consensus 92 ~~~~f~~~L~~al~~~~~l 110 (122)
..-.-+++|++||.++..=
T Consensus 16 rIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 16 RIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455788999999887643
No 26
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=20.22 E-value=2.1e+02 Score=19.31 Aligned_cols=50 Identities=6% Similarity=-0.003 Sum_probs=37.8
Q ss_pred cCCceeEEeeecCCeEEEEEEecCCCCCccHHHHHHHHHHHHHHHHHHHhcCcc
Q psy4825 63 VPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKI 116 (122)
Q Consensus 63 ~~dGyGi~Y~i~~d~i~f~vss~~s~~~~~~~~f~~~L~~al~~~~~ll~~~~~ 116 (122)
..+||-+-+.+.++.+...++.. ..|.-.....+++....|.+.|..++.
T Consensus 98 ~~~G~l~v~~aG~ga~LaVla~~----~adlGlv~~em~~lv~rig~~Lt~~~R 147 (150)
T 3kye_A 98 LDSTLLFVSTAGSGTCLAVLAGR----EADAAVLGYEMAMLVKSVRPYLMTAPR 147 (150)
T ss_dssp ESSEEEEEEEEETTEEEEEEEET----TSCHHHHHHHHHHHHHHHGGGGC----
T ss_pred eCCcEEEEEEcCCCcEEEEEeCC----CCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 46799999999988777666654 468888888999999999988876653
Done!