RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4825
(122 letters)
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 117 bits (293), Expect = 5e-32
Identities = 53/116 (45%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 1 MTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNYFKLSTSQVACKSDSFMGY 59
I G ID HLL LR+ A + E+F DE Y +SN F LSTSQV + F Y
Sbjct: 502 TVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCY 561
Query: 60 GPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRK 115
GPVVP+GYG YNP+ I FC+S+F SC TS+ +FA ++ SL + +L SR+
Sbjct: 562 GPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSSRQ 617
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 114 bits (286), Expect = 4e-31
Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 1 MTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNYFKLSTSQVACKSDSFMGY 59
I+GE D HLLGL+ A+E + ++F D +Y ++ +F LSTSQV K+D M +
Sbjct: 486 TDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFF 545
Query: 60 GPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
GPVVPDGYG YNP EA I F +SA+ SC T+AA+ A L+++L + L++S
Sbjct: 546 GPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRALLQS 599
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 113 bits (284), Expect = 1e-30
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 1 MTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNYFKLSTSQVACKSDSFMGY 59
E G+G D HL LR A + EL+ D AY+ N+ LSTS + + S G+
Sbjct: 538 TKEAAMGQGFDRHLYALRYLATARGLNLPELYLDPAYQQMNHNILSTSTLNSPAVSLGGF 597
Query: 60 GPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKIST 118
PVVPDG+G +Y + I VS++ +A +F + + L I + +E + I T
Sbjct: 598 APVVPDGFGIAYAVHDDWIGCNVSSYSG---RNAREFLHCVQKCLEDIFDALEGKAIKT 653
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 104 bits (259), Expect = 2e-27
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 1 MTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYK---LSNYFKLSTSQVACKSDSF 56
M + G+G D HLLGL A E +P ELF+D + F LSTS V
Sbjct: 494 MKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLR-VQ 552
Query: 57 MGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVESRKI 116
P+V +GYG Y+ R+ V S+++SC T A K + + + L+ + +
Sbjct: 553 GVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNTAHL 612
>3puf_C Ribonuclease H2 subunit C; RNAse H fold, triple barrel fold,
hydrolase, RNAse H; 3.10A {Homo sapiens} PDB: 3p56_C
Length = 167
Score = 28.6 bits (63), Expect = 0.36
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 3 ENIQGEGIDLHLLGLRQTALE-------HNIPCELFQDEAYKLSNYFKLSTSQVA-CKSD 54
E+ I+ H + LR L H +PCE+ D + +F + Q
Sbjct: 5 ESGDEAAIERHRVHLRSATLRDAVPATLHLLPCEVAVDGPAPVGRFFTPAIRQGPEGLEV 64
Query: 55 SFMGYGPV-----VPDGY 67
SF G VP G
Sbjct: 65 SFRGRCLRGEEVAVPPGL 82
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.68
Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 21/82 (25%)
Query: 34 EAYKLSNYFKLSTSQVACKSDSFMGYGPVVPDGYGCSY------NPREATIVFCVSAFKS 87
+ YK S + V ++D+ D YG S NP TI F K
Sbjct: 1634 DLYKTSKAAQ----DVWNRADNHFK------DTYGFSILDIVINNPVNLTIHF--GGEKG 1681
Query: 88 CLTT---SAAKFATSLDESLSA 106
SA F T +D L
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKT 1703
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 27.7 bits (62), Expect = 1.1
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 18/62 (29%)
Query: 51 CKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNL 110
+ G V GY + TS K+ + S + +G L
Sbjct: 107 APDGMYFERGIVGAHGYMSEF------------------FTSPEKYLVRIPRSQAELGFL 148
Query: 111 VE 112
+E
Sbjct: 149 IE 150
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein,
structural genomics, NPPSFA; 1.98A {Homo sapiens}
Length = 143
Score = 26.3 bits (59), Expect = 2.3
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 17 LRQTALEHNIPC 28
+R+TA++ IP
Sbjct: 117 IRRTAVDSGIPL 128
>3kio_C Ribonuclease H2 subunit C; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_C
Length = 166
Score = 25.9 bits (56), Expect = 3.3
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 24 HNIPCELFQDEAYKLSNYFKLSTSQVACKSDS------FMGYGPVVPDGY 67
H +PC++ + +F + A + G VP G+
Sbjct: 30 HLLPCDVLVSRPAPVDRFFTPAVRHDADGLQASFRGRGLRGEEVAVPPGF 79
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 25.9 bits (58), Expect = 4.0
Identities = 3/12 (25%), Positives = 9/12 (75%)
Query: 17 LRQTALEHNIPC 28
+R++AL++ +
Sbjct: 1029 IRRSALQYKVHY 1040
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A
{Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Length = 138
Score = 25.6 bits (56), Expect = 4.2
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 8/45 (17%)
Query: 40 NYFKLSTSQVACKSDSFMGYGP--------VVPDGYGCSYNPREA 76
+ F ++T + S GP P+G+ +Y P
Sbjct: 64 SEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAP 108
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A
{Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB:
1qzr_A*
Length = 418
Score = 25.3 bits (56), Expect = 6.9
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 86 KSCLTTSAAKFATSLDESLSAIGNLVES 113
K LTT F + + L I ++++
Sbjct: 372 KEQLTTRVKDFGSRCEIPLEYINKIMKT 399
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 25.3 bits (56), Expect = 7.6
Identities = 7/24 (29%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 13 HLLGLRQTALEHNIPCELFQDEAY 36
HL + A +P + DE Y
Sbjct: 212 HLQKILAVAARQCVP--ILADEIY 233
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 24.9 bits (55), Expect = 9.8
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 13 HLLGLRQTALEHNIPCELFQDEAY 36
H+ + + A E +P LF DE Y
Sbjct: 198 HVEDIVRLAEELRLP--LFSDEIY 219
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.381
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,665,743
Number of extensions: 81123
Number of successful extensions: 182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 18
Length of query: 122
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,412,271
Effective search space: 176490840
Effective search space used: 176490840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)