RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4825
         (122 letters)



>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 214

 Score =  131 bits (331), Expect = 2e-40
 Identities = 52/114 (45%), Positives = 74/114 (64%), Gaps = 1/114 (0%)

Query: 1   MTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNYFKLSTSQVACKSDSFMGY 59
               I+GE  D HLLGL+  A+E  +   ++F D +Y ++ +F LSTSQV  K+D  M +
Sbjct: 101 TDRAIRGEAFDRHLLGLKLQAIEDLVSTPDIFMDTSYAIAMHFHLSTSQVPAKTDCVMFF 160

Query: 60  GPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
           GPVVPDGYG  YNP EA I F +SA+ SC  T+AA+ A  L+++L  +  L++S
Sbjct: 161 GPVVPDGYGVCYNPMEAHINFSLSAYNSCAETNAARLAHYLEKALLDMRALLQS 214


>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 215

 Score =  128 bits (323), Expect = 4e-39
 Identities = 52/114 (45%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   MTENIQGEGIDLHLLGLRQTALEHNIP-CELFQDEAYKLSNYFKLSTSQVACKSDSFMGY 59
               I G  ID HLL LR+ A +      E+F DE Y +SN F LSTSQV    + F  Y
Sbjct: 102 TVMAITGMAIDNHLLALRELARDLCKEPPEMFMDETYLMSNRFVLSTSQVPTTMEMFCCY 161

Query: 60  GPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
           GPVVP+GYG  YNP+   I FC+S+F SC  TS+ +FA ++  SL  + +L  S
Sbjct: 162 GPVVPNGYGACYNPQPEAITFCISSFHSCKETSSVEFAEAVGASLVDMRDLCSS 215


>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 218

 Score =  114 bits (287), Expect = 9e-34
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 1   MTENIQGEGIDLHLLGLRQTALEHNIPC-ELFQDEAYKLSNY---FKLSTSQVACKSDSF 56
           M +   G+G D HLLGL   A E  +P  ELF+D  +  S     F LSTS V       
Sbjct: 102 MKDCSHGKGFDRHLLGLLLIAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYL-RVQ 160

Query: 57  MGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKFATSLDESLSAIGNLVES 113
               P+V +GYG  Y+ R+   V   S+++SC  T A K    +  +   +  L+ +
Sbjct: 161 GVVVPMVHNGYGFFYHIRDDRFVVACSSWRSCPETDAEKLVQMIFHAFHDMIQLMNT 217


>gi|152032317|gb|ABS29000.1|(24-141:166) interferon-gamma
          [Rhinoceros unicornis]   gi|83416599|gb|ABC18310.1|
          interferon gamma [Ceratotherium simum]  E=1e-37
          s/c=1.35 id=65% cov=100%
          Length = 118

 Score = 25.1 bits (55), Expect = 1.7
 Identities = 7/20 (35%), Positives = 7/20 (35%)

Query: 31 FQDEAYKLSNYFKLSTSQVA 50
          F  E   L  YF  S   V 
Sbjct: 4  FFKEIENLKEYFNASNPDVG 23


>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
           (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
          Length = 217

 Score = 25.0 bits (54), Expect = 2.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 90  TTSAAKFATSLDESLSAIGNLVE 112
           TT A   A ++ E+ S I  LV 
Sbjct: 188 TTPAYMLAQNIAEAASGIDKLVS 210


>d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus
           thermophilus [TaxId: 274]}
          Length = 126

 Score = 23.7 bits (51), Expect = 5.1
 Identities = 3/12 (25%), Positives = 5/12 (41%)

Query: 17  LRQTALEHNIPC 28
           L +    H +P 
Sbjct: 95  LMRVCNVHGVPL 106


>d3besl1 a.26.1.3 (L:0-126) Interferon-gamma {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 127

 Score = 23.9 bits (52), Expect = 5.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 31 FQDEAYKLSNYFKLSTSQVA 50
          +  EA  L  YF    S VA
Sbjct: 5  YVKEAENLKKYFNAGHSDVA 24


>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
           1503 [TaxId: 1422]}
          Length = 171

 Score = 23.5 bits (50), Expect = 8.2
 Identities = 6/61 (9%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 37  KLSNYFKLSTSQVACKSDSFMGYGPVVPDGYGCSYNPREATIVFCVSAFKSCLTTSAAKF 96
             + + +    +V   + +      +V       Y+P+   ++       S  T  + + 
Sbjct: 104 DAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNA----SNETGYSHRV 159

Query: 97  A 97
            
Sbjct: 160 V 160


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.267   0.0545    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 402,365
Number of extensions: 15593
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 11
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)