Query psy4828
Match_columns 448
No_of_seqs 135 out of 248
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 18:48:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00256 VATPase_H VATPase_H, r 100.0 2E-119 3E-124 932.3 43.0 416 30-448 1-428 (429)
2 KOG2759|consensus 100.0 5E-120 1E-124 910.6 38.0 428 21-448 1-441 (442)
3 COG5231 VMA13 Vacuolar H+-ATPa 100.0 1.4E-71 3.1E-76 542.5 29.4 402 24-448 5-431 (432)
4 PF03224 V-ATPase_H_N: V-ATPas 100.0 3.2E-64 6.9E-69 506.2 23.2 292 30-326 1-312 (312)
5 PF11698 V-ATPase_H_C: V-ATPas 100.0 4.3E-58 9.3E-63 396.8 9.4 118 331-448 1-118 (119)
6 PLN03200 cellulose synthase-in 99.3 5E-09 1.1E-13 125.3 33.1 346 71-445 221-638 (2102)
7 PLN03200 cellulose synthase-in 99.2 8.7E-09 1.9E-13 123.3 31.6 314 67-444 432-763 (2102)
8 PF05804 KAP: Kinesin-associat 98.8 4.2E-06 9.2E-11 92.9 29.1 293 131-444 329-648 (708)
9 PF05804 KAP: Kinesin-associat 98.7 6.2E-06 1.4E-10 91.6 27.9 314 98-447 262-609 (708)
10 KOG0166|consensus 98.7 8.5E-06 1.8E-10 86.8 27.5 310 85-444 153-485 (514)
11 PF04826 Arm_2: Armadillo-like 98.6 2.3E-05 5E-10 77.4 23.3 170 86-268 14-185 (254)
12 KOG4224|consensus 98.5 7.3E-06 1.6E-10 83.3 18.6 303 86-445 169-493 (550)
13 PF10508 Proteasom_PSMB: Prote 98.5 0.00016 3.5E-09 78.0 28.9 342 46-444 5-365 (503)
14 KOG4224|consensus 98.4 4.2E-05 9.1E-10 78.0 20.0 269 131-443 83-403 (550)
15 PF10508 Proteasom_PSMB: Prote 98.4 0.00061 1.3E-08 73.6 29.9 326 83-448 76-423 (503)
16 PF01602 Adaptin_N: Adaptin N 98.0 0.0022 4.7E-08 68.5 25.2 315 85-445 153-483 (526)
17 KOG4199|consensus 98.0 0.0083 1.8E-07 61.1 26.0 271 143-447 117-405 (461)
18 KOG0166|consensus 97.8 0.0016 3.6E-08 69.7 19.7 205 195-444 86-307 (514)
19 COG5064 SRP1 Karyopherin (impo 97.7 0.01 2.2E-07 60.6 21.8 352 41-445 102-496 (526)
20 PF01602 Adaptin_N: Adaptin N 97.6 0.028 6.1E-07 60.0 25.9 288 87-445 42-333 (526)
21 cd00020 ARM Armadillo/beta-cat 97.6 0.00092 2E-08 56.0 11.4 116 292-444 2-119 (120)
22 KOG2160|consensus 97.6 0.016 3.5E-07 59.2 21.6 147 99-253 97-247 (342)
23 COG5064 SRP1 Karyopherin (impo 97.2 0.01 2.2E-07 60.6 14.3 188 213-444 111-313 (526)
24 PTZ00429 beta-adaptin; Provisi 97.0 0.88 1.9E-05 51.7 29.8 143 86-245 181-325 (746)
25 cd00020 ARM Armadillo/beta-cat 96.9 0.0029 6.2E-08 53.0 7.2 74 372-446 6-79 (120)
26 PF04826 Arm_2: Armadillo-like 96.9 0.0024 5.2E-08 63.1 7.6 70 372-442 11-80 (254)
27 KOG4500|consensus 96.8 0.12 2.7E-06 54.3 19.2 301 108-444 65-389 (604)
28 PF00514 Arm: Armadillo/beta-c 96.4 0.0056 1.2E-07 43.0 4.2 39 406-444 2-40 (41)
29 KOG2171|consensus 96.1 3.7 8E-05 47.9 26.6 172 85-273 37-217 (1075)
30 PF13646 HEAT_2: HEAT repeats; 96.0 0.0096 2.1E-07 47.8 4.3 58 375-443 1-58 (88)
31 KOG1060|consensus 95.8 2.7 5.9E-05 47.4 23.2 304 59-445 163-533 (968)
32 PF10165 Ric8: Guanine nucleot 95.7 0.75 1.6E-05 49.1 18.3 240 190-436 47-328 (446)
33 PRK09687 putative lyase; Provi 95.7 2.6 5.7E-05 42.2 21.2 120 129-269 50-170 (280)
34 KOG2734|consensus 95.2 0.58 1.2E-05 49.5 14.7 205 193-446 102-347 (536)
35 KOG4199|consensus 95.2 4.6 0.0001 41.8 23.1 336 55-438 75-440 (461)
36 PF02985 HEAT: HEAT repeat; I 95.0 0.032 7E-07 36.9 3.5 28 419-446 3-30 (31)
37 KOG0946|consensus 95.0 6.6 0.00014 44.5 22.8 271 24-331 29-350 (970)
38 KOG1062|consensus 94.6 11 0.00023 42.9 25.3 323 85-445 180-544 (866)
39 smart00185 ARM Armadillo/beta- 94.4 0.094 2E-06 35.8 4.8 38 406-443 2-39 (41)
40 KOG1789|consensus 94.4 4.1 8.9E-05 47.6 19.5 319 100-443 1740-2074(2235)
41 KOG2160|consensus 94.3 2.3 5E-05 43.9 16.4 178 62-250 147-333 (342)
42 PF04078 Rcd1: Cell differenti 93.9 1 2.2E-05 44.8 12.4 176 24-214 36-228 (262)
43 KOG2122|consensus 93.7 5.6 0.00012 47.9 19.3 317 118-447 213-603 (2195)
44 PF12717 Cnd1: non-SMC mitotic 93.0 0.94 2E-05 42.0 10.3 94 98-206 1-94 (178)
45 PF05536 Neurochondrin: Neuroc 92.9 9.1 0.0002 42.1 19.2 131 87-227 8-151 (543)
46 PF13513 HEAT_EZ: HEAT-like re 92.9 0.16 3.5E-06 37.5 4.1 54 389-443 2-55 (55)
47 KOG0946|consensus 92.8 21 0.00046 40.7 25.5 135 133-269 61-219 (970)
48 KOG1293|consensus 92.7 19 0.00042 40.0 26.7 106 336-445 373-490 (678)
49 KOG1048|consensus 92.2 0.35 7.6E-06 54.0 7.1 67 377-444 237-303 (717)
50 KOG1222|consensus 90.0 32 0.0007 37.4 24.1 63 372-435 589-653 (791)
51 PF05536 Neurochondrin: Neuroc 90.0 34 0.00074 37.6 26.9 317 84-425 98-460 (543)
52 KOG2734|consensus 89.7 32 0.0007 36.9 21.2 262 86-382 127-429 (536)
53 PF11698 V-ATPase_H_C: V-ATPas 89.3 2.3 5.1E-05 37.4 8.3 112 30-162 4-115 (119)
54 PF00514 Arm: Armadillo/beta-c 88.9 0.88 1.9E-05 31.6 4.4 40 205-245 1-40 (41)
55 PF12348 CLASP_N: CLASP N term 88.5 12 0.00027 35.4 13.5 144 87-244 56-204 (228)
56 KOG3036|consensus 86.7 14 0.0003 36.8 12.5 147 61-213 101-256 (293)
57 cd08323 CARD_APAF1 Caspase act 86.6 1.9 4.1E-05 35.7 5.7 57 45-101 19-77 (86)
58 PRK13800 putative oxidoreducta 86.1 76 0.0016 37.1 24.8 59 372-441 837-895 (897)
59 KOG1240|consensus 85.6 58 0.0012 39.0 18.5 287 87-440 425-720 (1431)
60 KOG1059|consensus 84.8 77 0.0017 36.1 18.4 221 132-443 143-363 (877)
61 PF07539 DRIM: Down-regulated 84.8 1.1 2.3E-05 40.6 3.7 36 406-441 7-42 (141)
62 PRK09687 putative lyase; Provi 83.7 50 0.0011 33.0 18.2 167 58-244 12-186 (280)
63 PF13646 HEAT_2: HEAT repeats; 83.5 3.8 8.2E-05 32.4 6.2 57 372-440 30-87 (88)
64 cd08330 CARD_ASC_NALP1 Caspase 83.5 2.4 5.2E-05 34.7 4.9 62 38-101 13-77 (82)
65 PTZ00429 beta-adaptin; Provisi 83.1 94 0.002 35.7 28.2 141 82-244 63-206 (746)
66 KOG4646|consensus 83.1 14 0.0003 33.8 9.8 102 172-278 59-162 (173)
67 KOG1048|consensus 82.9 8.2 0.00018 43.5 10.2 134 133-269 518-665 (717)
68 PF03224 V-ATPase_H_N: V-ATPas 82.8 39 0.00086 34.0 14.6 127 146-274 70-207 (312)
69 PF09324 DUF1981: Domain of un 80.6 6.3 0.00014 32.4 6.5 65 84-159 17-85 (86)
70 smart00185 ARM Armadillo/beta- 80.6 4.1 8.9E-05 27.4 4.6 40 206-246 2-41 (41)
71 PF08569 Mo25: Mo25-like; Int 80.1 19 0.00041 37.2 11.2 129 33-165 154-286 (335)
72 PF12717 Cnd1: non-SMC mitotic 77.6 53 0.0011 30.3 12.5 70 83-163 24-93 (178)
73 cd08329 CARD_BIRC2_BIRC3 Caspa 77.6 6.8 0.00015 32.9 5.9 52 44-95 27-80 (94)
74 PF11841 DUF3361: Domain of un 76.9 37 0.00081 31.4 10.9 62 98-165 73-134 (160)
75 KOG1058|consensus 76.5 1.5E+02 0.0032 34.1 17.1 114 59-184 22-143 (948)
76 KOG1517|consensus 75.8 13 0.00028 43.6 9.0 154 255-446 509-672 (1387)
77 PF08167 RIX1: rRNA processing 75.7 60 0.0013 29.7 12.2 133 301-447 4-145 (165)
78 PF12348 CLASP_N: CLASP N term 74.8 5.8 0.00013 37.6 5.4 72 373-445 130-206 (228)
79 cd08324 CARD_NOD1_CARD4 Caspas 74.6 5 0.00011 33.1 4.1 66 33-98 8-75 (85)
80 PF10363 DUF2435: Protein of u 74.3 26 0.00057 29.2 8.5 58 99-165 17-75 (92)
81 smart00114 CARD Caspase recrui 70.9 12 0.00026 30.5 5.7 52 45-96 25-78 (88)
82 PF09450 DUF2019: Domain of un 70.7 3.3 7.1E-05 35.7 2.3 49 389-437 15-68 (106)
83 KOG1058|consensus 70.7 1.3E+02 0.0027 34.6 14.8 179 60-270 227-445 (948)
84 PF11841 DUF3361: Domain of un 70.2 93 0.002 28.9 12.0 86 333-438 38-124 (160)
85 PF08167 RIX1: rRNA processing 69.9 29 0.00064 31.8 8.6 89 76-166 59-147 (165)
86 PF06371 Drf_GBD: Diaphanous G 69.6 23 0.0005 32.4 7.9 75 194-268 83-168 (187)
87 KOG4413|consensus 68.4 1.6E+02 0.0034 30.8 17.6 266 139-442 88-377 (524)
88 KOG2274|consensus 67.9 94 0.002 36.2 13.4 117 82-206 569-691 (1005)
89 cd08325 CARD_CASP1-like Caspas 67.4 14 0.00031 30.2 5.4 51 46-96 22-75 (83)
90 KOG1222|consensus 67.4 35 0.00077 37.1 9.5 280 150-445 280-621 (791)
91 KOG2759|consensus 66.7 31 0.00067 36.6 8.8 111 31-162 328-438 (442)
92 cd01671 CARD Caspase activatio 66.5 13 0.00028 29.4 4.9 56 46-101 19-76 (80)
93 PF12755 Vac14_Fab1_bd: Vacuol 66.5 32 0.0007 28.9 7.5 66 372-440 26-92 (97)
94 KOG4500|consensus 66.1 2E+02 0.0043 31.2 19.9 94 176-269 316-413 (604)
95 PF10363 DUF2435: Protein of u 66.1 37 0.0008 28.3 7.7 69 135-206 5-74 (92)
96 PRK13800 putative oxidoreducta 65.4 13 0.00029 43.2 6.6 60 372-443 620-679 (897)
97 COG5209 RCD1 Uncharacterized p 64.3 27 0.0006 34.4 7.4 146 62-213 123-277 (315)
98 cd08819 CARD_MDA5_2 Caspase ac 63.8 20 0.00044 29.9 5.5 55 46-101 25-84 (88)
99 PF14500 MMS19_N: Dos2-interac 63.4 68 0.0015 31.9 10.4 66 140-207 6-72 (262)
100 cd08332 CARD_CASP2 Caspase act 63.2 21 0.00045 29.7 5.7 62 38-100 19-82 (90)
101 PF07814 WAPL: Wings apart-lik 61.5 45 0.00097 34.7 9.0 97 169-268 19-116 (361)
102 KOG0168|consensus 59.8 3.4E+02 0.0074 31.8 19.5 344 83-444 210-628 (1051)
103 KOG1062|consensus 59.5 3.3E+02 0.0072 31.5 27.4 248 140-443 114-377 (866)
104 KOG0168|consensus 59.2 59 0.0013 37.6 9.8 113 297-444 168-283 (1051)
105 PF08045 CDC14: Cell division 58.7 35 0.00076 34.0 7.3 85 342-437 113-199 (257)
106 PF06685 DUF1186: Protein of u 58.7 1.4E+02 0.0031 29.6 11.5 90 84-185 73-164 (249)
107 PF00619 CARD: Caspase recruit 58.6 30 0.00066 27.5 5.8 52 47-101 23-78 (85)
108 PF14726 RTTN_N: Rotatin, an a 58.3 44 0.00095 28.4 6.8 63 372-436 29-91 (98)
109 PF08569 Mo25: Mo25-like; Int 54.1 2.7E+02 0.0058 28.8 13.3 156 135-326 166-330 (335)
110 PF02084 Bindin: Bindin; Inte 54.0 25 0.00055 34.2 5.2 60 371-442 102-162 (238)
111 PF12231 Rif1_N: Rap1-interact 53.5 2.8E+02 0.0061 28.8 22.2 218 191-444 62-302 (372)
112 PF02985 HEAT: HEAT repeat; I 53.3 28 0.00062 22.6 3.9 31 374-405 1-31 (31)
113 KOG2256|consensus 53.0 3.3E+02 0.0072 30.7 14.1 173 83-272 240-434 (661)
114 PF14668 RICTOR_V: Rapamycin-i 52.8 18 0.00039 29.1 3.4 45 371-416 26-70 (73)
115 cd08326 CARD_CASP9 Caspase act 51.8 39 0.00084 27.8 5.3 57 45-101 21-79 (84)
116 KOG1061|consensus 51.4 4.3E+02 0.0093 30.3 19.7 72 133-207 121-192 (734)
117 cd00256 VATPase_H VATPase_H, r 51.3 68 0.0015 34.4 8.4 128 22-162 292-425 (429)
118 TIGR02270 conserved hypothetic 51.2 37 0.00081 36.0 6.5 58 374-443 148-205 (410)
119 COG5562 Phage envelope protein 50.2 15 0.00033 32.9 2.9 33 322-354 77-111 (137)
120 PF12783 Sec7_N: Guanine nucle 49.2 2E+02 0.0044 26.0 11.1 108 99-210 36-152 (168)
121 PF09759 Atx10homo_assoc: Spin 47.2 49 0.0011 28.3 5.4 44 404-447 16-61 (102)
122 PF13251 DUF4042: Domain of un 47.1 53 0.0012 31.0 6.2 72 372-445 100-174 (182)
123 cd08804 Death_ank2 Death domai 47.1 1E+02 0.0022 25.2 7.2 72 31-105 6-83 (84)
124 PF08045 CDC14: Cell division 45.4 64 0.0014 32.2 6.7 58 390-447 107-165 (257)
125 PF12755 Vac14_Fab1_bd: Vacuol 44.8 1.9E+02 0.0041 24.3 8.8 69 134-204 28-96 (97)
126 PF06371 Drf_GBD: Diaphanous G 44.3 1.1E+02 0.0024 27.7 7.9 77 76-161 102-186 (187)
127 PF13513 HEAT_EZ: HEAT-like re 44.1 59 0.0013 23.5 4.9 51 103-160 5-55 (55)
128 KOG0413|consensus 44.0 69 0.0015 37.7 7.3 106 85-206 969-1075(1529)
129 TIGR02270 conserved hypothetic 43.7 67 0.0014 34.1 7.0 59 372-443 116-174 (410)
130 PF13251 DUF4042: Domain of un 43.7 2.9E+02 0.0062 26.1 11.2 121 84-206 39-176 (182)
131 cd00183 TFIIS_I N-terminal dom 42.3 1.2E+02 0.0025 24.2 6.7 66 375-441 4-69 (76)
132 TIGR00277 HDIG uncharacterized 42.2 23 0.00049 27.1 2.5 36 386-421 27-70 (80)
133 KOG1967|consensus 42.0 1.9E+02 0.0041 33.9 10.4 133 86-226 869-1005(1030)
134 cd03561 VHS VHS domain family; 41.8 1.1E+02 0.0023 27.0 7.0 52 134-185 38-90 (133)
135 cd03572 ENTH_epsin_related ENT 41.6 1.7E+02 0.0037 25.9 8.1 64 100-182 16-79 (122)
136 cd08803 Death_ank3 Death domai 41.2 89 0.0019 25.7 5.9 63 43-105 15-83 (84)
137 KOG1293|consensus 41.0 2.5E+02 0.0054 31.7 10.8 80 75-164 455-535 (678)
138 PF12830 Nipped-B_C: Sister ch 41.0 2.5E+02 0.0055 26.1 9.8 79 131-213 43-132 (187)
139 KOG1242|consensus 40.4 5.6E+02 0.012 28.6 21.4 176 231-428 268-465 (569)
140 PF00173 Cyt-b5: Cytochrome b5 40.4 9.1 0.0002 29.8 -0.1 26 395-420 24-49 (76)
141 PF03778 DUF321: Protein of un 39.6 7.2 0.00016 23.6 -0.6 8 358-365 2-9 (20)
142 KOG1060|consensus 39.1 2.7E+02 0.0059 32.3 10.9 139 82-227 427-598 (968)
143 PF11864 DUF3384: Domain of un 38.0 5.3E+02 0.012 27.6 18.1 72 371-444 248-329 (464)
144 PF12460 MMS19_C: RNAPII trans 37.6 5.1E+02 0.011 27.2 13.8 39 143-184 200-238 (415)
145 PF12719 Cnd3: Nuclear condens 36.7 4.4E+02 0.0096 26.2 12.0 161 83-246 63-227 (298)
146 COG5215 KAP95 Karyopherin (imp 36.2 3.1E+02 0.0067 30.8 10.5 70 83-161 596-667 (858)
147 cd03567 VHS_GGA VHS domain fam 36.1 1.5E+02 0.0032 26.7 7.0 65 109-184 25-90 (139)
148 PF04388 Hamartin: Hamartin pr 36.0 2.4E+02 0.0053 32.0 10.2 92 86-184 68-161 (668)
149 PF11864 DUF3384: Domain of un 35.4 5.9E+02 0.013 27.3 21.0 18 426-443 447-464 (464)
150 PF12030 DUF3517: Domain of un 35.0 1.5E+02 0.0032 30.9 7.7 118 24-162 144-267 (337)
151 COG4575 ElaB Uncharacterized c 34.7 2.1E+02 0.0045 24.7 7.2 82 308-413 3-91 (104)
152 KOG2122|consensus 34.5 3.5E+02 0.0077 33.8 11.3 86 196-282 509-605 (2195)
153 KOG2038|consensus 34.2 1.7E+02 0.0038 33.6 8.4 78 77-165 293-373 (988)
154 PF05918 API5: Apoptosis inhib 34.1 3.1E+02 0.0066 30.5 10.3 91 99-205 36-126 (556)
155 PF11701 UNC45-central: Myosin 33.6 3.6E+02 0.0079 24.4 9.8 138 88-240 7-153 (157)
156 KOG0212|consensus 33.1 7.4E+02 0.016 27.8 14.7 102 97-210 348-453 (675)
157 cd03569 VHS_Hrs_Vps27p VHS dom 32.8 1.6E+02 0.0035 26.4 6.8 53 133-185 41-94 (142)
158 COG5231 VMA13 Vacuolar H+-ATPa 32.1 1.5E+02 0.0032 30.9 6.9 74 83-162 355-428 (432)
159 TIGR02829 spore_III_AE stage I 31.9 1.3E+02 0.0028 31.8 6.8 27 334-360 60-86 (381)
160 cd08327 CARD_RAIDD Caspase act 31.3 76 0.0016 26.7 4.1 51 45-95 25-78 (94)
161 cd08805 Death_ank1 Death domai 30.6 1.8E+02 0.0038 24.0 6.0 63 43-105 15-83 (84)
162 KOG1824|consensus 30.6 1E+03 0.022 28.6 21.8 73 369-445 813-886 (1233)
163 cd08317 Death_ank Death domain 30.4 2.8E+02 0.006 22.3 7.2 72 30-104 5-82 (84)
164 COG5098 Chromosome condensatio 29.9 1.6E+02 0.0034 33.7 7.2 126 311-445 866-1000(1128)
165 KOG1824|consensus 29.1 1.9E+02 0.004 34.2 7.7 84 136-223 177-261 (1233)
166 KOG0537|consensus 29.0 29 0.00063 30.7 1.2 25 395-419 29-53 (124)
167 KOG1059|consensus 28.6 9.2E+02 0.02 27.9 12.8 134 89-244 149-284 (877)
168 cd08785 CARD_CARD9-like Caspas 28.5 77 0.0017 26.2 3.6 50 45-94 21-75 (86)
169 KOG1566|consensus 28.2 6.9E+02 0.015 25.9 11.0 103 57-163 184-287 (342)
170 smart00288 VHS Domain present 27.8 1.7E+02 0.0037 25.8 6.0 55 367-446 13-67 (133)
171 PF10925 DUF2680: Protein of u 27.7 79 0.0017 24.3 3.3 32 47-82 25-56 (59)
172 cd03569 VHS_Hrs_Vps27p VHS dom 27.6 3.8E+02 0.0082 24.0 8.3 68 372-442 40-111 (142)
173 PF14663 RasGEF_N_2: Rapamycin 27.2 3.2E+02 0.0069 23.5 7.4 74 181-254 14-101 (115)
174 cd08810 CARD_BCL10 Caspase act 27.1 1.3E+02 0.0029 24.8 4.7 52 45-97 21-74 (84)
175 smart00288 VHS Domain present 27.0 3E+02 0.0065 24.2 7.4 67 109-186 24-91 (133)
176 PRK13342 recombination factor 26.9 2.4E+02 0.0052 29.6 7.9 82 358-445 250-336 (413)
177 PF06012 DUF908: Domain of Unk 26.7 1.4E+02 0.003 30.6 5.9 65 362-426 254-323 (329)
178 PF05004 IFRD: Interferon-rela 26.7 1.6E+02 0.0034 30.0 6.3 57 385-443 197-255 (309)
179 PF11935 DUF3453: Domain of un 26.3 89 0.0019 30.5 4.3 69 368-445 3-72 (239)
180 KOG3036|consensus 26.2 6.8E+02 0.015 25.2 10.1 142 108-268 31-178 (293)
181 COG5369 Uncharacterized conser 25.9 6.9E+02 0.015 28.0 10.9 160 48-217 421-608 (743)
182 cd03561 VHS VHS domain family; 25.2 4.6E+02 0.01 22.9 10.3 74 82-161 35-111 (133)
183 PF04405 ScdA_N: Domain of Unk 24.4 56 0.0012 24.8 1.9 44 398-441 5-56 (56)
184 PF05997 Nop52: Nucleolar prot 24.3 4.3E+02 0.0094 25.4 8.5 66 137-202 4-70 (217)
185 smart00509 TFS2N Domain in the 24.3 3.7E+02 0.0079 21.4 7.5 65 373-441 3-67 (75)
186 cd03568 VHS_STAM VHS domain fa 24.2 4.6E+02 0.01 23.5 8.2 67 373-442 37-107 (144)
187 KOG2028|consensus 24.0 3.5E+02 0.0076 28.9 8.1 83 358-446 399-486 (554)
188 PF07166 DUF1398: Protein of u 23.8 95 0.0021 27.6 3.5 34 317-350 67-101 (125)
189 cd00197 VHS_ENTH_ANTH VHS, ENT 23.7 4.2E+02 0.0091 22.2 7.5 69 372-443 36-113 (115)
190 PF08216 CTNNBL: Catenin-beta- 23.4 1E+02 0.0022 26.8 3.5 54 363-434 52-105 (108)
191 PF10815 ComZ: ComZ; InterPro 23.3 34 0.00073 25.9 0.5 26 402-427 11-42 (56)
192 KOG1061|consensus 23.1 4.7E+02 0.01 30.0 9.5 92 86-189 162-253 (734)
193 KOG2274|consensus 23.1 5.2E+02 0.011 30.5 9.8 74 83-162 529-602 (1005)
194 PRK14700 recombination factor 22.8 2.5E+02 0.0055 28.6 6.8 83 357-445 145-232 (300)
195 KOG1242|consensus 22.6 1.1E+03 0.024 26.3 12.6 163 91-273 258-430 (569)
196 KOG2023|consensus 22.6 7.5E+02 0.016 28.4 10.6 172 83-265 127-306 (885)
197 PF04388 Hamartin: Hamartin pr 22.5 1.1E+03 0.024 26.7 12.5 110 88-226 8-120 (668)
198 PF11701 UNC45-central: Myosin 22.3 4.1E+02 0.0088 24.0 7.6 88 97-191 55-144 (157)
199 PF07539 DRIM: Down-regulated 21.9 2.3E+02 0.0049 25.5 5.7 79 176-270 18-100 (141)
200 PF08216 CTNNBL: Catenin-beta- 21.8 1.4E+02 0.0029 26.0 4.0 33 194-226 65-97 (108)
201 PF10952 DUF2753: Protein of u 21.8 2.3E+02 0.005 25.5 5.4 30 406-435 90-121 (140)
202 PF04869 Uso1_p115_head: Uso1 21.3 8.9E+02 0.019 24.7 10.7 105 96-212 167-274 (312)
203 cd08788 CARD_NOD2_2_CARD15 Cas 21.3 1.8E+02 0.0038 24.0 4.2 52 47-98 21-75 (81)
204 KOG4535|consensus 21.0 2.5E+02 0.0055 30.8 6.5 75 372-446 105-180 (728)
205 KOG1789|consensus 20.8 8.2E+02 0.018 29.9 10.7 117 149-267 1741-1862(2235)
206 PF09758 FPL: Uncharacterised 20.4 4.1E+02 0.009 24.3 7.0 45 114-164 13-58 (149)
207 KOG2090|consensus 20.3 1.1E+02 0.0025 34.1 3.9 44 397-440 99-144 (704)
208 PF12002 MgsA_C: MgsA AAA+ ATP 20.3 6.1E+02 0.013 23.7 8.2 80 359-444 9-93 (168)
No 1
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=100.00 E-value=1.5e-119 Score=932.29 Aligned_cols=416 Identities=58% Similarity=0.985 Sum_probs=397.9
Q ss_pred cHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHH
Q psy4828 30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLI 109 (448)
Q Consensus 30 ~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li 109 (448)
+|+++++++||+|+|||++|+|||+||++|+++||+||++ ..|.++++.+|+.|+++|+++|++++++|++||+|++|
T Consensus 1 ~~~~~~~~~Ir~r~ipWe~y~ra~~Is~~d~~~ik~~d~~--~~~~~~~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li 78 (429)
T cd00256 1 SQFQEIAAEVRARKINWQSYMRSQMISEEDYQFIKALEKK--RVKEEILDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLI 78 (429)
T ss_pred ChHHHHHHHHHCCCCChHHHHHhCCCCHHHHHHHHHHHhH--HHHHHHhcccHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999987 56888889999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhc-C
Q psy4828 110 DDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLA-N 188 (448)
Q Consensus 110 ~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~-~ 188 (448)
+||++++|+|+++|++.+. .+++||.||+++|+++|+||+++|+++||.|+++|+...+..+++.|++||+++++++ +
T Consensus 79 ~dll~~~~~~~~~f~~~~~-~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 157 (429)
T cd00256 79 DDMLQEDDTRVKLFHDDAL-LKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITN 157 (429)
T ss_pred HHHHHhchHHHHHHHHHhh-ccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCC
Confidence 9999999999999999765 4569999999999999999999999999999999988778888999999999999864 4
Q ss_pred ChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCc-chHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHh
Q psy4828 189 NDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV-NFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADIL 267 (448)
Q Consensus 189 ~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~-~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~il 267 (448)
++++.++++||+.||+.++||..||+++|+++|+++|++.. ++|+||+++||+|+|||++++++.+.++++||.|++++
T Consensus 158 ~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~ 237 (429)
T cd00256 158 NDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDIL 237 (429)
T ss_pred cchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHH
Confidence 77888999999999999999999999999999999997655 99999999999999999999999888899999999999
Q ss_pred hhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHH
Q psy4828 268 SDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFD 337 (448)
Q Consensus 268 k~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfD 337 (448)
+.++||| |+++++.+.+..+.++..||++|+++++++|++|||+||||.+|+++|.++|++++++|||||
T Consensus 238 k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD 317 (429)
T cd00256 238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFD 317 (429)
T ss_pred HhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999 999988766555567889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCc
Q psy4828 338 EYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG 417 (448)
Q Consensus 338 eY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~ 417 (448)
||++||+||+|+|||+|+||+||+||++||+||||+++|+|+++|++|+||+++|||||||||||||||+||.+++++||
T Consensus 318 ~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~ 397 (429)
T cd00256 318 EYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG 397 (429)
T ss_pred HHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828 418 KQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448 (448)
Q Consensus 418 K~~vM~Lm~h~d~eVr~eAL~avQklm~~~W 448 (448)
|++||+||+|+|++||||||+||||||+|||
T Consensus 398 K~~vM~Lm~h~d~~Vr~eAL~avQklm~~~w 428 (429)
T cd00256 398 KQRVMRLLNHEDPNVRYEALLAVQKLMVHNW 428 (429)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999
No 2
>KOG2759|consensus
Probab=100.00 E-value=4.7e-120 Score=910.60 Aligned_cols=428 Identities=55% Similarity=0.940 Sum_probs=419.5
Q ss_pred CcccccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChH-HHHHHHhhchhHHHHHHHHHhcccChh
Q psy4828 21 DKTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSA-KRAEMLNERRGHAAKTFLNLLEHISKD 99 (448)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~-~r~~~~~~~~~~~~~~~l~lL~~~~~~ 99 (448)
|++||.+++++|+.++++||+|.|||++|.|+++|+++|+++|+++++++.+ +|.+++..++++|+.+|++|++.+.++
T Consensus 1 ~~~~~~~~~s~~~~~~~~vR~~~i~W~~y~rs~~ise~d~~~i~~~~~~~~~~~r~~~l~~~~~~~v~~fi~LlS~~~kd 80 (442)
T KOG2759|consen 1 GAVDMLLDTSQLQEIAAKVRARKINWASYMRSEMISEEDYQFIRRLEKAPLSKERAQVLSANNAQYVKTFINLLSHIDKD 80 (442)
T ss_pred CCcchhchhhHHHHHHHHHHhcCCcchhHHHHHHHhHhhHHHHHHHhcccchhhhhHHhhcccHHHHHHHHHHhchhhhH
Confidence 5789999999999999999999999999999999999999999999999876 899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHH
Q psy4828 100 STIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTW 179 (448)
Q Consensus 100 d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~ 179 (448)
|+++|+|++|+||++++++|+.+|+..+...++.+|.+|+++|.++|+||.+++++|+++++++|+..+...++..++++
T Consensus 81 d~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~ 160 (442)
T KOG2759|consen 81 DTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGF 160 (442)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-cCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhh-ccCcchHHHHHHHHHHHHhhcChhHHHhhhcC
Q psy4828 180 LKDQLKL-ANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVL-SGRVNFQIQYQLIFCLWVLTFNPKLADRMNKF 257 (448)
Q Consensus 180 l~~~L~~-~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL-~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~ 257 (448)
|..++++ .+++|++++++|||.+|+.++||..||..+|+..++..| ++.+|+|+|||.+||+|+|||+|.+++.+.++
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~ 240 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRF 240 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhc
Confidence 9999986 578999999999999999999999999999999999888 78899999999999999999999999999888
Q ss_pred CCHHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q psy4828 258 NVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQ 327 (448)
Q Consensus 258 ~iI~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 327 (448)
++|+.|++|++.+.||| |+++++++.+++++.+..|++|+++|+++.|++|||+||||.+|+++|.+.|+
T Consensus 241 ~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~ 320 (442)
T KOG2759|consen 241 DLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLK 320 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc
Q psy4828 328 ASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR 407 (448)
Q Consensus 328 ~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~ 407 (448)
+++++|||||||.+||+||+|+|||+|+||+||+|||.+|+||||+++|.|+++|++|+||.+||||||||||||||||+
T Consensus 321 ~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~ 400 (442)
T KOG2759|consen 321 NSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE 400 (442)
T ss_pred HHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828 408 GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448 (448)
Q Consensus 408 gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~W 448 (448)
||.+++++|||++||+||+|+||+||||||+|||++|+++|
T Consensus 401 gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~w 441 (442)
T KOG2759|consen 401 GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHNW 441 (442)
T ss_pred HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999
No 3
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=100.00 E-value=1.4e-71 Score=542.54 Aligned_cols=402 Identities=25% Similarity=0.389 Sum_probs=312.4
Q ss_pred cccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHH
Q psy4828 24 DMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQ 103 (448)
Q Consensus 24 ~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vq 103 (448)
-+-++++++++++++||.+.++|++++|+..+++-+...-|.+... -+++-.++|-.+..+|++++++..-++++-
T Consensus 5 pvelDnsqvdEIinnvR~~~~~w~a~aRsnELqei~~~tgk~l~~~----~vk~~~~dg~~~snlflk~l~k~~vp~~~l 80 (432)
T COG5231 5 PVELDNSQVDEIINNVRMFLKMWEAKARSNELQEIPLETGKELVER----FVKMKYRDGRRESNLFLKFLRKENVPTTIL 80 (432)
T ss_pred ceeccchhHHHHHHHHHHHHHHHHHHhccchhhcCchhhchHHHHH----HHHHhhccccccchhHHHHhccccCCceee
Confidence 3567999999999999999999999999988888887777776642 233445667788999999998854455443
Q ss_pred HHHH-H------HHHHHh--hchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHH
Q psy4828 104 YILV-L------IDDILQ--EDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLN 174 (448)
Q Consensus 104 yvL~-l------i~dll~--~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~ 174 (448)
..+. + ++.+|+ -.|..+..|.+. +.-+..++ |.--...=.+++..... ......+..+-
T Consensus 81 l~~~~l~D~~~~~~kfLS~~fgpd~y~f~~~d-----e~~~~~y~------d~~~k~~f~~vf~~~~~-~~~~~v~~~~~ 148 (432)
T COG5231 81 LDSPELLDEEDLIDKFLSLLFGPDIYSFYRSD-----EMLTKMYE------DKKHKKEFLSVFKQMLK-DNTSYVESNYL 148 (432)
T ss_pred ecCchhhhHHHHHHHHHHHhcChHHHHHHHhC-----HHHHHHHh------hhHHHHHHHHHHHHHcc-CchHHHhhhHH
Confidence 3222 1 112221 123344433221 00000000 00000011112221111 11122344455
Q ss_pred HHHHHHHHHhhhc--CChhHHHHHHHHHHhhccchhhHHHHhhc-chhhHHHhhccCcc-hHHHHHHHHHHHHhhcChhH
Q psy4828 175 FYLTWLKDQLKLA--NNDYMQSVARCLQMMLRIDEYRIAFINVD-GIRTLLSVLSGRVN-FQIQYQLIFCLWVLTFNPKL 250 (448)
Q Consensus 175 ~~l~~l~~~L~~~--~~~~~~~~~~~l~~lL~~~~~R~~f~~~~-gv~~L~~lL~~~~~-~Ql~Y~~ll~lWlLSF~~~~ 250 (448)
-|+.+|++.+++- -+.+. |++|++.++-.+++|.+.|..+ .-.+++.++++.+| .|+||++++|+|+|||++++
T Consensus 149 LfleyLgkl~Q~i~~lTrlf--av~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~ 226 (432)
T COG5231 149 LFLEYLGKLSQLIDFLTRLF--AVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKEC 226 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHH
Confidence 5666676655431 12333 8999999999999999999866 34578889998888 99999999999999999999
Q ss_pred HHhhhcC-CCHHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHh-cchHHHHHHHhcCCCCChHHHHH
Q psy4828 251 ADRMNKF-NVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQ-SKVLKQLSILEQRKFDDEDIVED 318 (448)
Q Consensus 251 ~~~l~~~-~iI~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~-~~~l~~l~~L~~rk~~Dedl~ed 318 (448)
++.+.++ +.|..|+.|+|...||| |++.+.+. +.+..|.. +++.|.++.|++|||+||||+.|
T Consensus 227 aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK-----~~I~~~lll~~~~k~vq~L~erkysDEel~~d 301 (432)
T COG5231 227 AQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPK-----GYIFSPLLLNDISKCVQVLLERKYSDEELVID 301 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----chhhhhHhhcchHHHHHHHHhcCCChHHHHHH
Confidence 9888654 88999999999999999 77776543 45556555 55999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhH
Q psy4828 319 VQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDI 398 (448)
Q Consensus 319 l~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DI 398 (448)
|+.+++.|++++|+||+||+|.+|+.||+|+|||+|++++||..|+++|+++||+++|+|+++|....+.+++|||||||
T Consensus 302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di 381 (432)
T COG5231 302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDI 381 (432)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999997556677999999999
Q ss_pred hhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828 399 GEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448 (448)
Q Consensus 399 ge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~W 448 (448)
|++||.+|+|+.++.+.|||++||+||+|+|++||||||+|+|.+|+-.|
T Consensus 382 ~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~~~ 431 (432)
T COG5231 382 FQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSEW 431 (432)
T ss_pred HHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999877
No 4
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=100.00 E-value=3.2e-64 Score=506.20 Aligned_cols=292 Identities=39% Similarity=0.657 Sum_probs=235.0
Q ss_pred cHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhccc-ChhhHHHHHHHH
Q psy4828 30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHI-SKDSTIQYILVL 108 (448)
Q Consensus 30 ~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~-~~~d~vqyvL~l 108 (448)
|||++.+++||+|+|||++|+|||+||++|+++||+||+.++++|.++++.+|+.|+++|+++|+++ +++|++||+|++
T Consensus 1 ~~~~~~~~~ir~r~i~W~~~~ra~~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~l 80 (312)
T PF03224_consen 1 THLQEIRNNIRSRPIPWDGYVRAGLISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTL 80 (312)
T ss_dssp HHHHHHHHHHHHS---HHHHHHTTSS-HHHHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCHHHHHHhCCCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCCh---hhHHHHHHHHHHHhh
Q psy4828 109 IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNP---SDLNFYLTWLKDQLK 185 (448)
Q Consensus 109 i~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~---~~l~~~l~~l~~~L~ 185 (448)
|+||++++|+|+++|++.++.++..||.||+++|+++|+||+++|+++||.|+++++.+... +.+..|++||+++++
T Consensus 81 i~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~ 160 (312)
T PF03224_consen 81 IDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLS 160 (312)
T ss_dssp HHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988777789999999999999999999999999999999877766 789999999999888
Q ss_pred hcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhh------ccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCC
Q psy4828 186 LANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVL------SGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNV 259 (448)
Q Consensus 186 ~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL------~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~i 259 (448)
+++.+++..+++||+.+|+.++||..||+.+|++.|+++| +++.++|+||+++||+|+|||++++++.|.+.++
T Consensus 161 ~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~ 240 (312)
T PF03224_consen 161 SSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYL 240 (312)
T ss_dssp HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSH
T ss_pred CCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccch
Confidence 7667788889999999999999999999999999999999 5788999999999999999999999999987789
Q ss_pred HHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy4828 260 IPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKL 326 (448)
Q Consensus 260 I~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L 326 (448)
||.|+++++.++||| |+++++++ .++..|+++|++|++++|++|||+||||.+|+++|.|.|
T Consensus 241 i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~-----~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L 312 (312)
T PF03224_consen 241 IPLLADILKDSIKEKVVRVSLAILRNLLSKAPK-----SNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLKEIL 312 (312)
T ss_dssp HHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST-----THHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHhccHH-----HHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999 99999875 267799999999999999999999999999999999986
No 5
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=100.00 E-value=4.3e-58 Score=396.82 Aligned_cols=118 Identities=64% Similarity=1.127 Sum_probs=104.9
Q ss_pred hhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhH
Q psy4828 331 QDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKH 410 (448)
Q Consensus 331 ~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~ 410 (448)
|+|||||||++||+||+|+|||||+||+||+||++||++|||+++|+|+++|++|+||+++||||||||+|||+||+||.
T Consensus 1 k~ltsfdeY~~El~sg~L~WSP~H~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ 80 (119)
T PF11698_consen 1 KKLTSFDEYLSELESGHLEWSPVHKSEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN 80 (119)
T ss_dssp HT--HHHHHHHHHHHT-----GGGG-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH
T ss_pred CCCCcHHHHHHHHhcCCccccCCCCCccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH
Confidence 57999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828 411 VIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448 (448)
Q Consensus 411 il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~W 448 (448)
+++++|||++||+||+|+|++||||||+||||||+|||
T Consensus 81 ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~w 118 (119)
T PF11698_consen 81 IIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNNW 118 (119)
T ss_dssp HHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS-
T ss_pred HHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.28 E-value=5e-09 Score=125.27 Aligned_cols=346 Identities=14% Similarity=0.101 Sum_probs=228.4
Q ss_pred hHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCch---
Q psy4828 71 SAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDG--- 147 (448)
Q Consensus 71 ~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~--- 147 (448)
.+.+..+++..+ +..|+.+|++-++.++..+....+..|..+.++......+. +..++|+.++.+++.
T Consensus 221 ee~~~aVIeaGa---VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~a------GgIp~LI~lL~sp~~e~~ 291 (2102)
T PLN03200 221 ESSISKVLDAGA---VKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADA------GGIPALINATVAPSKEFM 291 (2102)
T ss_pred hHHHHHHHHCCC---HHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHC------CCHHHHHHHHhCcchhhh
Confidence 345666666555 89999999875566788888888999999888777777775 668899999986542
Q ss_pred ------hHHHHHHHHHHHHHhcccC------------CCCh---h---hHHHH-------------------HHHHHHHh
Q psy4828 148 ------FIINMTAKIIAKIACWSVD------------LLNP---S---DLNFY-------------------LTWLKDQL 184 (448)
Q Consensus 148 ------~I~~~a~~iLt~l~~~~~~------------~~~~---~---~l~~~-------------------l~~l~~~L 184 (448)
-.+..|...|+.|....+. +... + .+.+. ...|.+.+
T Consensus 292 ~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Ll 371 (2102)
T PLN03200 292 QGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLL 371 (2102)
T ss_pred ccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHh
Confidence 2367777888876643211 0000 0 01111 11233444
Q ss_pred hhcCChh-HHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhc-cCcchHHHHHHHHHHHHhh-cChhHHHhhhcCCCHH
Q psy4828 185 KLANNDY-MQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS-GRVNFQIQYQLIFCLWVLT-FNPKLADRMNKFNVIP 261 (448)
Q Consensus 185 ~~~~~~~-~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~-~~~~~Ql~Y~~ll~lWlLS-F~~~~~~~l~~~~iI~ 261 (448)
+..++.. +..++.+|..++.++..|+.+...++++.|+++|+ .+..+|- +++.|+|-|+ .+.+..+.+.+.|.||
T Consensus 372 r~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~--~Av~aL~~L~~~~~e~~~aIi~~ggIp 449 (2102)
T PLN03200 372 KPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE--ELIRALSSLCCGKGGLWEALGGREGVQ 449 (2102)
T ss_pred CCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH--HHHHHHHHHhCCCHHHHHHHHHcCcHH
Confidence 4433332 34567888888899999999999999999999997 4345555 9999999999 6678888888888999
Q ss_pred HHHHHhhhhh---hhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHH-HHHHHHHHhh
Q psy4828 262 TLADILSDSV---KEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQF-LNEKLQASVQ 331 (448)
Q Consensus 262 ~L~~ilk~~~---KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~-L~e~L~~~~~ 331 (448)
.|+++|+... ++. |+...+ + ++...++++|++|.|-.|.... |+++.++..+ |.+.
T Consensus 450 ~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-d-----enr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NL------ 515 (2102)
T PLN03200 450 LLISLLGLSSEQQQEYAVALLAILTDEV-D-----ESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNL------ 515 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCC-H-----HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHH------
Confidence 9999998653 223 444332 2 2455788888665555554444 6777776444 4433
Q ss_pred hcchHH-HHHHHH-hhCCccc--CCCCCChhHHHhchhh----h-hhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHh
Q psy4828 332 DLSSFD-EYKTEV-KSGRLEW--SPVHRSAQFWRENAPR----L-HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYV 402 (448)
Q Consensus 332 ~lTsfD-eY~~El-~SG~L~W--SP~H~se~FW~EN~~k----f-~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~v 402 (448)
+..+ +++..+ .+|-+.. .-.-..+.=-++++-. + ...+-+.++.|+.+| .++|+.+..+++-=||..+
T Consensus 516 --a~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LL-lsdd~~~~~~aL~vLgnIl 592 (2102)
T PLN03200 516 --CCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALL-LGDLPESKVHVLDVLGHVL 592 (2102)
T ss_pred --hCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHh-cCCChhHHHHHHHHHHHHH
Confidence 2212 233334 2243321 0000011122455544 1 234556778999999 6888889898888888887
Q ss_pred hhCcchhH----HHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 403 RHCPRGKH----VIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 403 r~~p~gr~----il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.. -.++. .....||-+.+.+|+.|++++++.+|.+++..+..
T Consensus 593 sl-~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 593 SV-ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred hh-cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 65 23332 23356899999999999999999999999877653
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.23 E-value=8.7e-09 Score=123.27 Aligned_cols=314 Identities=16% Similarity=0.171 Sum_probs=212.3
Q ss_pred hcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhch-hHHHHHHHhhhcCCCchhHHHHhhhcCC
Q psy4828 67 DTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDR-SRVEIFKEYSQTKREPVCSQFLNLLNGS 145 (448)
Q Consensus 67 d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~-~~~~~f~~~~~~~~~~~~~~fl~lL~~~ 145 (448)
-....+.+..+++..+ +..|+++|++ ++....++.+..+..+....+ .+.. +.+. +..+||.++|.++
T Consensus 432 ~~~~~e~~~aIi~~gg---Ip~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr~a-Iiea------GaIP~LV~LL~s~ 500 (2102)
T PLN03200 432 CCGKGGLWEALGGREG---VQLLISLLGL-SSEQQQEYAVALLAILTDEVDESKWA-ITAA------GGIPPLVQLLETG 500 (2102)
T ss_pred hCCCHHHHHHHHHcCc---HHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHH-HHHC------CCHHHHHHHHcCC
Confidence 3333445556666655 8999999998 678888999999998876555 4544 5553 7899999999999
Q ss_pred chhHHHHHHHHHHHHHhcccCCCChhhHH--HHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHH
Q psy4828 146 DGFIINMTAKIIAKIACWSVDLLNPSDLN--FYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLS 223 (448)
Q Consensus 146 d~~I~~~a~~iLt~l~~~~~~~~~~~~l~--~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~ 223 (448)
+.-++..|+..|.+|....+.. ...+. .-+..|.+.|++++...+..++..|..+++..+.+. ++.+..
T Consensus 501 ~~~iqeeAawAL~NLa~~~~qi--r~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~-------I~~Lv~ 571 (2102)
T PLN03200 501 SQKAKEDSATVLWNLCCHSEDI--RACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT-------ISQLTA 571 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCcHHH--HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH-------HHHHHH
Confidence 9999999999999998643210 11110 122334445555556667778899999887765543 366777
Q ss_pred hhc-cCcchHHHHHHHHHH-HHhhcCh--hHHHh-hhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHH
Q psy4828 224 VLS-GRVNFQIQYQLIFCL-WVLTFNP--KLADR-MNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKEN 289 (448)
Q Consensus 224 lL~-~~~~~Ql~Y~~ll~l-WlLSF~~--~~~~~-l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~ 289 (448)
+|. ...+.+. +++-++ -+++--. +.... ....|.||.|+++++.. .||+ |+....+ +.
T Consensus 572 LLlsdd~~~~~--~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~------d~ 643 (2102)
T PLN03200 572 LLLGDLPESKV--HVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQ------DL 643 (2102)
T ss_pred HhcCCChhHHH--HHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCh------HH
Confidence 774 3333333 444333 2233211 12222 22457899999999654 4444 6666543 24
Q ss_pred HHHHHhcc-hHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhh
Q psy4828 290 CIAMVQSK-VLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLH 368 (448)
Q Consensus 290 ~~~mv~~~-~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~ 368 (448)
+..++..| ++|++..|+... ++--.+....|..... . .-++.+..+-.
T Consensus 644 ~~avv~agaIpPLV~LLss~~--~~v~keAA~AL~nL~~-~-----~~~~q~~~~v~----------------------- 692 (2102)
T PLN03200 644 CESLATDEIINPCIKLLTNNT--EAVATQSARALAALSR-S-----IKENRKVSYAA----------------------- 692 (2102)
T ss_pred HHHHHHcCCHHHHHHHHhcCC--hHHHHHHHHHHHHHHh-C-----CCHHHHHHHHH-----------------------
Confidence 55677765 678888888765 4444444444444411 1 11122222222
Q ss_pred hhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 369 EKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 369 e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.+.++.|+++| ++.|+.+..+|+.-|+-++++ |+|+..+...|+-..++++|.++++++|.+|..|+=.|-
T Consensus 693 ---~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~ 763 (2102)
T PLN03200 693 ---EDAIKPLIKLA-KSSSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL 763 (2102)
T ss_pred ---cCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 57899999999 578999999999999999998 999998888999999999999999999999999986554
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.80 E-value=4.2e-06 Score=92.87 Aligned_cols=293 Identities=16% Similarity=0.191 Sum_probs=181.6
Q ss_pred CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchh
Q psy4828 131 REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEY 208 (448)
Q Consensus 131 ~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~ 208 (448)
..+..+++.++|.+++.-.+..|+++|-.|.-+..-+. .+ ..++.-|...|. +++....++..|..+-..++.
T Consensus 329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~---~mV~~GlIPkLv~LL~--d~~~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS---QMVSLGLIPKLVELLK--DPNFREVALKILYNLSMDDEA 403 (708)
T ss_pred HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH---HHHHCCCcHHHHHHhC--CCchHHHHHHHHHHhccCHhh
Confidence 34778899999999988899999999998864432111 11 112233344443 345556788999999999999
Q ss_pred hHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhh-------hcccCCC
Q psy4828 209 RIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEK-------NLIEKPT 281 (448)
Q Consensus 209 R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEK-------NLl~~~~ 281 (448)
|..|...++++.++++|..+.+-+++.+++-.+=-||=++..++.+.+.+.++.|++.+-. .+.+ |+-...+
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~-~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK-TRDPLLLKLIRNISQHDG 482 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh-cccHHHHHHHHHHHhcCc
Confidence 9999999999999988755455555557766666788888888888877768888776522 2222 5544432
Q ss_pred chhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh--hh-c--chHHHHHHHHhhCCcccCCCCCC
Q psy4828 282 EPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASV--QD-L--SSFDEYKTEVKSGRLEWSPVHRS 356 (448)
Q Consensus 282 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~--~~-l--TsfDeY~~El~SG~L~WSP~H~s 356 (448)
... .+...=+.+++..+...+ +++-..|-+-.|.+.--... .. + -+|=.|...+.+ |....
T Consensus 483 ~~k-------~~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~------~g~~~ 548 (708)
T PF05804_consen 483 PLK-------ELFVDFIGDLAKIVSSGD-SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLK------PGASE 548 (708)
T ss_pred hHH-------HHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhC------CCCCC
Confidence 111 122111223334443333 22223333333333321110 00 0 133333333333 22233
Q ss_pred hhHHHhchhhhh----hh-------hHHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcchhHHH-HHhCcHHHHHh
Q psy4828 357 AQFWRENAPRLH----EK-------NYELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRGKHVI-EQLGGKQLVMQ 423 (448)
Q Consensus 357 e~FW~EN~~kf~----e~-------~~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~gr~il-~~lg~K~~vM~ 423 (448)
++.+.|=+.-+- +. +-+++..|+++|... .|...+.=.+|-.++|++| +.+|..+ ++-++-.-+..
T Consensus 549 dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylid 627 (708)
T PF05804_consen 549 DDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLID 627 (708)
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHH
Confidence 445555433221 11 136788999999643 4555555578999999999 6666665 66788889999
Q ss_pred hhcCCChhHHHHHHHHHHHHh
Q psy4828 424 LLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 424 Lm~h~d~eVr~eAL~avQklm 444 (448)
||.+.|++||+-|=.|+--+|
T Consensus 628 L~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 628 LMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999888776555
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.74 E-value=6.2e-06 Score=91.56 Aligned_cols=314 Identities=18% Similarity=0.277 Sum_probs=211.8
Q ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HH
Q psy4828 98 KDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NF 175 (448)
Q Consensus 98 ~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~ 175 (448)
.++.++-.+.++-.|..+........ + .+-.+++.++|++++.-....+..+|.+|..++.. .+.+ ..
T Consensus 262 QeqLlrv~~~lLlNLAed~~ve~kM~-~------~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~EN---K~~m~~~g 331 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRVELKMV-N------KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKEN---KDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHH-h------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH---HHHHHHcC
Confidence 45666666777777776665555532 2 37788899999999888888899999998755432 1111 12
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhh
Q psy4828 176 YLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMN 255 (448)
Q Consensus 176 ~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~ 255 (448)
.+.-|...+.+++.+.+..++++|.+|--.++.|..+.+.++++.|+.+|.+. +. +..++-+++.+|.+.+....|.
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-~~--~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-NF--REVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC-ch--HHHHHHHHHHhccCHhhHHHHh
Confidence 33334444555556677889999999999999999999999999999999753 22 3468888999999999888787
Q ss_pred cCCCHHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHH
Q psy4828 256 KFNVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEK 325 (448)
Q Consensus 256 ~~~iI~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~ 325 (448)
..+.||.+++++-..+.+. ||..+. .|+..|.++++++.|-...- ++.|+=|..-+..+...
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-------rnaqlm~~g~gL~~L~~ra~-~~~D~lLlKlIRNiS~h 480 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-------RNAQLMCEGNGLQSLMKRAL-KTRDPLLLKLIRNISQH 480 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-------HHHHHHHhcCcHHHHHHHHH-hcccHHHHHHHHHHHhc
Confidence 6788999999986665444 555554 36667777665443332221 24465554333333221
Q ss_pred HHHHhhhcchHHHHHH----------------HHhh--CCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccC--
Q psy4828 326 LQASVQDLSSFDEYKT----------------EVKS--GRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETS-- 385 (448)
Q Consensus 326 L~~~~~~lTsfDeY~~----------------El~S--G~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S-- 385 (448)
.-..-+-|..|.. |... +.|.++... ..++- +++.++.-|.++|..+
T Consensus 481 ---~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld---------~~~ll-~~~~llp~L~~~L~~g~~ 547 (708)
T PF05804_consen 481 ---DGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD---------WAQLL-QEYNLLPWLKDLLKPGAS 547 (708)
T ss_pred ---CchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC---------HHHHH-HhCCHHHHHHHHhCCCCC
Confidence 1111223444544 4433 344443321 22222 2578888999999543
Q ss_pred CChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhc--CCChhHHHHHHHHHHHHhccC
Q psy4828 386 RDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLS--HEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 386 ~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~~~ 447 (448)
.|..+|.+ +==+|-.+.. |.....+-+-|.-..+.+||+ .+|.|.--+-+.|.++++-|.
T Consensus 548 ~dDl~LE~-Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~ 609 (708)
T PF05804_consen 548 EDDLLLEV-VILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE 609 (708)
T ss_pred ChHHHHHH-HHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh
Confidence 45555554 3456766654 888888888899999999995 579999999999999998774
No 10
>KOG0166|consensus
Probab=98.73 E-value=8.5e-06 Score=86.80 Aligned_cols=310 Identities=19% Similarity=0.221 Sum_probs=217.4
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCch-hHHHHHHHHHHHHHhc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDG-FIINMTAKIIAKIACW 163 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~-~I~~~a~~iLt~l~~~ 163 (448)
.+..|+.||.+ +.+++..-..=-+..+..+.|..-.+..+. ....|++.++..++. .+...+.-+|++|.+.
T Consensus 153 avp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~------g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 153 AVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSC------GALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred chHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhh------cchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 47789999998 888888777778899999999888888886 668899999998887 3455577788877665
Q ss_pred ccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhh-ccchhhHHHHhhcchhhHHHhhcc-CcchHHHHHHHHHH
Q psy4828 164 SVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMML-RIDEYRIAFINVDGIRTLLSVLSG-RVNFQIQYQLIFCL 241 (448)
Q Consensus 164 ~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL-~~~~~R~~f~~~~gv~~L~~lL~~-~~~~Ql~Y~~ll~l 241 (448)
.++..+-+.+...+..|...+.+.+.+....+..+++.|. -.++-=+++.+.++++.|+.+|.. ...++. -++-++
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~--PaLRai 303 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT--PALRAI 303 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc--HHHhhc
Confidence 5444455778999999999888877777777889999887 455666678888999999999953 233442 111111
Q ss_pred -HHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCC
Q psy4828 242 -WVLTFNPKLADRMNKFNVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKF 310 (448)
Q Consensus 242 -WlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 310 (448)
=..|=+..-.+.+...|.+|.|..++..+.+++ |+...++. -+-+++++|++|.|-.+....
T Consensus 304 GNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~------qiqaVida~l~p~Li~~l~~~- 376 (514)
T KOG0166|consen 304 GNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQE------QIQAVIDANLIPVLINLLQTA- 376 (514)
T ss_pred cceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHH------HHHHHHHcccHHHHHHHHhcc-
Confidence 122223333444566799999999999876663 77775432 355889999887776666655
Q ss_pred CChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhH
Q psy4828 311 DDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLV 390 (448)
Q Consensus 311 ~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~v 390 (448)
|.++.-...+-..-+ |+ +|. | +=..-+-+ ..++|.|+++| +-.|+.+
T Consensus 377 -ef~~rKEAawaIsN~-------ts---------~g~------~-------~qi~yLv~--~giI~plcdlL-~~~D~~i 423 (514)
T KOG0166|consen 377 -EFDIRKEAAWAISNL-------TS---------SGT------P-------EQIKYLVE--QGIIKPLCDLL-TCPDVKI 423 (514)
T ss_pred -chHHHHHHHHHHHhh-------cc---------cCC------H-------HHHHHHHH--cCCchhhhhcc-cCCChHH
Confidence 666655555443221 11 111 0 01111222 34999999999 7889988
Q ss_pred HHHHHhhHhhHhhhCcchh---------HHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 391 LSVASYDIGEYVRHCPRGK---------HVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 391 laVAc~DIge~vr~~p~gr---------~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
+.|+.--+.-.-+. ++.. ..+++.||.+.|=.|=+|+|.++..-|..=+.+..
T Consensus 424 i~v~Ld~l~nil~~-~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 424 ILVALDGLENILKV-GEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred HHHHHHHHHHHHHH-HHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhc
Confidence 77776666555444 3333 46889999999999999999999999988776543
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.56 E-value=2.3e-05 Score=77.36 Aligned_cols=170 Identities=17% Similarity=0.220 Sum_probs=129.8
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
.+.++.+|....++-+.+.++..+... ...|..-+++.+. +.-++..++|..+++-++.+|...|..+.....
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~------Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDL------GGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHc------CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 688999999978888888888888875 5566666667675 567789999999999999999999998865432
Q ss_pred CCCChhhHHHHHHHHHHHhhhc--CChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHH
Q psy4828 166 DLLNPSDLNFYLTWLKDQLKLA--NNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWV 243 (448)
Q Consensus 166 ~~~~~~~l~~~l~~l~~~L~~~--~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWl 243 (448)
+...++.|+.-+++.+.+. +++.+..+.++|..|-..++|+.++.+ .++.++.+|..+ +..++.+++-+++-
T Consensus 87 ---n~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G-~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 87 ---NQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSG-SEKTKVQVLKVLVN 160 (254)
T ss_pred ---hHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcC-ChHHHHHHHHHHHH
Confidence 4556778888887655442 345555678999999999999998754 688888988643 33566699999999
Q ss_pred hhcChhHHHhhhcCCCHHHHHHHhh
Q psy4828 244 LTFNPKLADRMNKFNVIPTLADILS 268 (448)
Q Consensus 244 LSF~~~~~~~l~~~~iI~~L~~ilk 268 (448)
||-++..++++...+..+.+..++.
T Consensus 161 LS~np~~~~~Ll~~q~~~~~~~Lf~ 185 (254)
T PF04826_consen 161 LSENPDMTRELLSAQVLSSFLSLFN 185 (254)
T ss_pred hccCHHHHHHHHhccchhHHHHHHc
Confidence 9999998877755444555555543
No 12
>KOG4224|consensus
Probab=98.52 E-value=7.3e-06 Score=83.34 Aligned_cols=303 Identities=14% Similarity=0.150 Sum_probs=206.6
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
..++.+ |.+..+.-+.+|.+..+-.|-....+|-.+.+. ...+-+..+|.+.|.-+++-+..-++.+..+..
T Consensus 169 L~pltr-LakskdirvqrnatgaLlnmThs~EnRr~LV~a-------G~lpvLVsll~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 169 LEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRVLVHA-------GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhhhhcc-------CCchhhhhhhccCChhHHHHHHHHhhhhhhhHH
Confidence 566777 777566778899999999999888888886655 344557889999999999999999998876542
Q ss_pred CCC-ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHh
Q psy4828 166 DLL-NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVL 244 (448)
Q Consensus 166 ~~~-~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlL 244 (448)
.+- -.+.=++++.-|.+.+..+++...--+.-+|..+....+|...+.+.++++.++.+|.+..+ .+.-..++|+--+
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~-plilasVaCIrni 319 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG-PLILASVACIRNI 319 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch-hHHHHHHHHHhhc
Confidence 111 01111456667777776654444323567788889999999999999999999999965444 4445889999999
Q ss_pred hcChhHHHhhhcCCCHHHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHHHHhcchHHH-HHHHhcCCCC-C
Q psy4828 245 TFNPKLADRMNKFNVIPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQ-LSILEQRKFD-D 312 (448)
Q Consensus 245 SF~~~~~~~l~~~~iI~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~mv~~~~l~~-l~~L~~rk~~-D 312 (448)
|-+|--..-+...|+..+|+++|+..--|. ||..... ++..++.+.|.++. ...+....-+ -
T Consensus 320 sihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse------~n~~~i~esgAi~kl~eL~lD~pvsvq 393 (550)
T KOG4224|consen 320 SIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE------HNVSVIRESGAIPKLIELLLDGPVSVQ 393 (550)
T ss_pred ccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh------hhhHHHhhcCchHHHHHHHhcCChhHH
Confidence 998765555567799999999998887774 7665432 35567888886554 4555554433 2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCC-----
Q psy4828 313 EDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRD----- 387 (448)
Q Consensus 313 edl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D----- 387 (448)
++|..-+..| +=-|+.+.-+. |+.++..|+..+. |..
T Consensus 394 seisac~a~L-----------al~d~~k~~ll--------------------------d~gi~~iLIp~t~-s~s~Ev~g 435 (550)
T KOG4224|consen 394 SEISACIAQL-----------ALNDNDKEALL--------------------------DSGIIPILIPWTG-SESEEVRG 435 (550)
T ss_pred HHHHHHHHHH-----------HhccccHHHHh--------------------------hcCCcceeecccC-ccchhhcc
Confidence 3344433333 32233222222 2455666666662 222
Q ss_pred --hhHHHHHHhhHhhHhhhCcchhHHHH--HhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 388 --PLVLSVASYDIGEYVRHCPRGKHVIE--QLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 388 --~~vlaVAc~DIge~vr~~p~gr~il~--~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
...|+-.|.|.-+|.|. +.-+. --|...++.+.+.+.+..+|.=|.+++|.|.-
T Consensus 436 NaAaAL~Nlss~v~~Yarv----iEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 436 NAAAALINLSSDVEHYARV----IEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred cHHHHHHhhhhhhHHHHHH----HHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 24556666777666664 11111 12567799999999999999999999999863
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.47 E-value=0.00016 Score=77.99 Aligned_cols=342 Identities=15% Similarity=0.185 Sum_probs=212.4
Q ss_pred chhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHH
Q psy4828 46 WNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKE 125 (448)
Q Consensus 46 W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~ 125 (448)
|+++.+.=...++..+.+..+.... .....++.-. -..+++.|+. .+.+.+..+...++.++.... -..+...
T Consensus 5 ~~~~l~~l~~~~~~~~~L~~l~~~~--~~~~~l~~~~---~~~lf~~L~~-~~~e~v~~~~~iL~~~l~~~~-~~~l~~~ 77 (503)
T PF10508_consen 5 INELLEELSSKAERLEALPELKTEL--SSSPFLERLP---EPVLFDCLNT-SNREQVELICDILKRLLSALS-PDSLLPQ 77 (503)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHH--hhhhHHHhch---HHHHHHHHhh-cChHHHHHHHHHHHHHHhccC-HHHHHHH
Confidence 4555555444555555544443321 1112222221 2337788887 466667788888888886542 2221222
Q ss_pred hhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCC---CChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHh
Q psy4828 126 YSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDL---LNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMM 202 (448)
Q Consensus 126 ~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~---~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~l 202 (448)
--+.+...|.++++.|+..+++.+..++...... ..+ ..++..+...+..++......++.+|..+
T Consensus 78 --------~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~---~~l~~~i~~~L~~~d~~Va~~A~~~L~~l 146 (503)
T PF10508_consen 78 --------YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD---NELLPLIIQCLRDPDLSVAKAAIKALKKL 146 (503)
T ss_pred --------HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC---ccHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 1234688899999999999999998887543210 011 23444555566555566666789999999
Q ss_pred hccchhhHHHHhhcchhhHHHhhcc-CcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhh-hhhh------
Q psy4828 203 LRIDEYRIAFINVDGIRTLLSVLSG-RVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDS-VKEK------ 274 (448)
Q Consensus 203 L~~~~~R~~f~~~~gv~~L~~lL~~-~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~-~KEK------ 274 (448)
.+.+.....++..++...|.+++.. +..++...+-+ ++.+.+.+++..+.....|+++.+..-+++. +-=|
T Consensus 147 ~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el-~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 147 ASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYEL-LVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred hCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHH-HHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 9999999888888888888888865 44455544443 5566778888888877789999998877553 1111
Q ss_pred --hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCC
Q psy4828 275 --NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSP 352 (448)
Q Consensus 275 --NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP 352 (448)
.|...+ +.+.-|.+.|+.+.|-.+-.+.=+||.+ ..+-....+ ++-..+.. ++|
T Consensus 226 l~~La~~~-------~g~~yL~~~gi~~~L~~~l~~~~~dp~~-~~~~l~g~~------------~f~g~la~----~~~ 281 (503)
T PF10508_consen 226 LSELAETP-------HGLQYLEQQGIFDKLSNLLQDSEEDPRL-SSLLLPGRM------------KFFGNLAR----VSP 281 (503)
T ss_pred HHHHHcCh-------hHHHHHHhCCHHHHHHHHHhccccCCcc-cchhhhhHH------------HHHHHHHh----cCh
Confidence 222211 2344577788877776666665556611 111111111 11111111 133
Q ss_pred CCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHH-HHhCcH-HH----HHhhhc
Q psy4828 353 VHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVI-EQLGGK-QL----VMQLLS 426 (448)
Q Consensus 353 ~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il-~~lg~K-~~----vM~Lm~ 426 (448)
+...+. --..+..|.+.+ .|.|+....+|.--+|.+.. .++|+..+ .+.|.+ .. +.....
T Consensus 282 ~~v~~~------------~p~~~~~l~~~~-~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~ 347 (503)
T PF10508_consen 282 QEVLEL------------YPAFLERLFSML-ESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIK 347 (503)
T ss_pred HHHHHH------------HHHHHHHHHHHh-CCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhc
Confidence 332111 135666777777 58999999999999998885 49999999 665543 23 344446
Q ss_pred CCChhHHHHHHHHHHHHh
Q psy4828 427 HEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 427 h~d~eVr~eAL~avQklm 444 (448)
+...++|-.||.|+.-++
T Consensus 348 ~~~~~lk~r~l~al~~il 365 (503)
T PF10508_consen 348 SGSTELKLRALHALASIL 365 (503)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 678899999999998875
No 14
>KOG4224|consensus
Probab=98.38 E-value=4.2e-05 Score=77.98 Aligned_cols=269 Identities=17% Similarity=0.243 Sum_probs=189.2
Q ss_pred CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC---ChhhHHHHH------------HHH---HH----------
Q psy4828 131 REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL---NPSDLNFYL------------TWL---KD---------- 182 (448)
Q Consensus 131 ~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~---~~~~l~~~l------------~~l---~~---------- 182 (448)
..+...|.+-+|.+.|.-|+-.|+.-+..|+.....+. .--+++.++ +|. .+
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhh
Confidence 44667889999999999999888887776654321111 111111111 010 00
Q ss_pred -----------Hh-hhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhH
Q psy4828 183 -----------QL-KLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKL 250 (448)
Q Consensus 183 -----------~L-~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~ 250 (448)
.| ++.+...+..+..+|..|-...+.|+.++..+|++.|+.+++. .++-.||+++-++=.+.-+...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhhHHH
Confidence 01 1112223445788899999999999999999999999998853 3577899999999999888888
Q ss_pred HHhhhcC--CCHHHHHHHhhhh-hhhh--------hcccCCCchhHHHHHHHHHHhcchHH-HHHHHhcCCCCChHHHHH
Q psy4828 251 ADRMNKF--NVIPTLADILSDS-VKEK--------NLIEKPTEPALAKENCIAMVQSKVLK-QLSILEQRKFDDEDIVED 318 (448)
Q Consensus 251 ~~~l~~~--~iI~~L~~ilk~~-~KEK--------NLl~~~~~~~~~~~~~~~mv~~~~l~-~l~~L~~rk~~Dedl~ed 318 (448)
...+.+. .+||.|+++..+. .|-| ||-+.. ++..+++++|.+| +++.|+..- -++|.++
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-------~Yq~eiv~ag~lP~lv~Llqs~~--~plilas 312 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-------EYQREIVEAGSLPLLVELLQSPM--GPLILAS 312 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-------hhhhHHHhcCCchHHHHHHhCcc--hhHHHHH
Confidence 7778554 5999999999765 6667 333322 3677899988665 555664443 6899999
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhH
Q psy4828 319 VQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDI 398 (448)
Q Consensus 319 l~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DI 398 (448)
..++.++ + ..+++- +|.- +..-+|-|+++|...++..+.+-|..-+
T Consensus 313 VaCIrni--------s-----ihplNe-----~lI~----------------dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 313 VACIRNI--------S-----IHPLNE-----VLIA----------------DAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred HHHHhhc--------c-----cccCcc-----ccee----------------cccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 9999877 1 011111 1111 2566889999996555666887777777
Q ss_pred hhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 399 GEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 399 ge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
--++-.|...+.++..-|+-+.+.+|+-..--+|+-+---|+..|
T Consensus 359 rnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 359 RNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred HHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 788887888999999999999999999999888888766555443
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.36 E-value=0.00061 Score=73.58 Aligned_cols=326 Identities=16% Similarity=0.188 Sum_probs=196.5
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
+.|...+...|.+ +++.+.+.++..|..+++.....++.+.+ .+.++..+..|..+|.-+...|+.+|..|..
T Consensus 76 ~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~------~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 76 PQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVD------NELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcC------ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 4678888888888 77889999999999999887766665544 3778899999999999999999999999985
Q ss_pred cccCCCChhhHHHH-----HHHHHHHhhhcCChhHH-HHHHHHHHhhc-cchhhHHHHhhcchhhHHHhhcc-CcchHHH
Q psy4828 163 WSVDLLNPSDLNFY-----LTWLKDQLKLANNDYMQ-SVARCLQMMLR-IDEYRIAFINVDGIRTLLSVLSG-RVNFQIQ 234 (448)
Q Consensus 163 ~~~~~~~~~~l~~~-----l~~l~~~L~~~~~~~~~-~~~~~l~~lL~-~~~~R~~f~~~~gv~~L~~lL~~-~~~~Ql~ 234 (448)
.. .+++.+ +.-|...+..+ ++.++ -+..++..+.+ .++.....++.+.+..++..|.+ .+-+|+
T Consensus 149 ~~------~~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvql- 220 (503)
T PF10508_consen 149 HP------EGLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQL- 220 (503)
T ss_pred Cc------hhHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHH-
Confidence 33 233333 55555555442 33332 24566666664 46667777776667777777754 344666
Q ss_pred HHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChH
Q psy4828 235 YQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDED 314 (448)
Q Consensus 235 Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Ded 314 (448)
.++-++=.|.-.+...+.|.+.|+++.|++++..+.-.= . ...|.-.|.++...++..- +.++
T Consensus 221 -nalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp----~----------~~~~~l~g~~~f~g~la~~--~~~~ 283 (503)
T PF10508_consen 221 -NALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDP----R----------LSSLLLPGRMKFFGNLARV--SPQE 283 (503)
T ss_pred -HHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCC----c----------ccchhhhhHHHHHHHHHhc--ChHH
Confidence 888888899888889999988999999999987662220 0 0012222222333332222 1222
Q ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHhh-CCcccCCCCCChhHHHhch-hhhhhhhHHHHHHHHHhhccCCChhHHH
Q psy4828 315 IVEDVQFLNEKLQASVQDLSSFDEYKTEVKS-GRLEWSPVHRSAQFWRENA-PRLHEKNYELLKSLIHLLETSRDPLVLS 392 (448)
Q Consensus 315 l~edl~~L~e~L~~~~~~lTsfDeY~~El~S-G~L~WSP~H~se~FW~EN~-~kf~e~~~~llk~L~~lL~~S~D~~vla 392 (448)
+.+..-.+.+.|.+.+.. ..-+....-+++ |.+.=|+ +++ +-. .++.+.=-.++++..... ++..+.+..
T Consensus 284 v~~~~p~~~~~l~~~~~s-~d~~~~~~A~dtlg~igst~----~G~--~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~ 355 (503)
T PF10508_consen 284 VLELYPAFLERLFSMLES-QDPTIREVAFDTLGQIGSTV----EGK--QLLLQKQGPAMKHVLKAIGDAI-KSGSTELKL 355 (503)
T ss_pred HHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHhCCH----HHH--HHHHhhcchHHHHHHHHHHHHh-cCCchHHHH
Confidence 222111111111111000 011111111111 2221010 000 000 111112234566666666 344445666
Q ss_pred HHHhhHhhHhhhCcc---------hhHHHHHhCcHH---HHHhhhcCCChhHHHHHHHHHHHHhccCC
Q psy4828 393 VASYDIGEYVRHCPR---------GKHVIEQLGGKQ---LVMQLLSHEDPNVRYEALLAVQKLMVHNW 448 (448)
Q Consensus 393 VAc~DIge~vr~~p~---------gr~il~~lg~K~---~vM~Lm~h~d~eVr~eAL~avQklm~~~W 448 (448)
-+.|-++.+....+. .+...+.+|++. .+|.+++.|=||+|--|+.-++.|..|+|
T Consensus 356 r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 356 RALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 677778887655443 334445556533 78999999999999999999999999999
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.02 E-value=0.0022 Score=68.54 Aligned_cols=315 Identities=20% Similarity=0.235 Sum_probs=183.5
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhH-HHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSR-VEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~-~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
+...+.++|.. +++.++..++.++.++ ...+.- ..++.. -+..+.+++...+++.+...++++..+...
T Consensus 153 ~~~~l~~lL~d-~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~--------~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 153 LIPKLKQLLSD-KDPSVVSAALSLLSEI-KCNDDSYKSLIPK--------LIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHHHHHTTH-SSHHHHHHHHHHHHHH-HCTHHHHTTHHHH--------HHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred HHHHHhhhccC-CcchhHHHHHHHHHHH-ccCcchhhhhHHH--------HHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 45666677744 5577888888888888 222211 132322 244456666788999999999888876532
Q ss_pred ccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHH
Q psy4828 164 SVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCL 241 (448)
Q Consensus 164 ~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~l 241 (448)
. ...- ..+++.+...+++.++..+..+++++..+...+... ...+..|..+|. .....++|-++-++
T Consensus 223 ~-----~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~-----~~~~~~L~~lL~-s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 223 E-----PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELL-----QKAINPLIKLLS-SSDPNVRYIALDSL 291 (526)
T ss_dssp S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHH-----HHHHHHHHHHHT-SSSHHHHHHHHHHH
T ss_pred C-----hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHH-----HhhHHHHHHHhh-cccchhehhHHHHH
Confidence 2 2333 567777777776654555555677777666655522 234667777776 45666778888877
Q ss_pred HHhhcChhHHHhhhcCCCHHHHHHHhh----hhhhhh--hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHH
Q psy4828 242 WVLTFNPKLADRMNKFNVIPTLADILS----DSVKEK--NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDI 315 (448)
Q Consensus 242 WlLSF~~~~~~~l~~~~iI~~L~~ilk----~~~KEK--NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl 315 (448)
=.++-.. .+.+. . .......++ .++|-+ .++..-.+.. |+..++. .+++-+.+.. |+++
T Consensus 292 ~~l~~~~--~~~v~-~--~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~----n~~~Il~----eL~~~l~~~~--d~~~ 356 (526)
T PF01602_consen 292 SQLAQSN--PPAVF-N--QSLILFFLLYDDDPSIRKKALDLLYKLANES----NVKEILD----ELLKYLSELS--DPDF 356 (526)
T ss_dssp HHHCCHC--HHHHG-T--HHHHHHHHHCSSSHHHHHHHHHHHHHH--HH----HHHHHHH----HHHHHHHHC----HHH
T ss_pred HHhhccc--chhhh-h--hhhhhheecCCCChhHHHHHHHHHhhccccc----chhhHHH----HHHHHHHhcc--chhh
Confidence 7765543 11111 1 112222332 123333 3333322211 2222211 2222332333 8877
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhh-h---hhhHHHHHHHHHhhccCCChhHH
Q psy4828 316 VEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL-H---EKNYELLKSLIHLLETSRDPLVL 391 (448)
Q Consensus 316 ~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf-~---e~~~~llk~L~~lL~~S~D~~vl 391 (448)
..++-.--..+.+.+ -.+++.|..-+.. .|+=+..+.++..|.. ..++ . +.....++.|++.+..-.+|.++
T Consensus 357 ~~~~i~~I~~la~~~--~~~~~~~v~~l~~-ll~~~~~~~~~~~~~~-i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~ 432 (526)
T PF01602_consen 357 RRELIKAIGDLAEKF--PPDAEWYVDTLLK-LLEISGDYVSNEIINV-IRDLLSNNPELREKILKKLIELLEDISSPEAL 432 (526)
T ss_dssp HHHHHHHHHHHHHHH--GSSHHHHHHHHHH-HHHCTGGGCHCHHHHH-HHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHH
T ss_pred hhhHHHHHHHHHhcc--CchHHHHHHHHHH-hhhhccccccchHHHH-HHHHhhcChhhhHHHHHHHHHHHHHhhHHHHH
Confidence 777665555555554 2355555543332 2222434556777765 3332 2 22356899999999777899999
Q ss_pred HHHHhhHhhHhhhCcc---hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 392 SVASYDIGEYVRHCPR---GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 392 aVAc~DIge~vr~~p~---gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+++++=||||..+.++ ...+++ .+.+....++++||.+++.|.-|+-.
T Consensus 433 ~~~~wilGEy~~~~~~~~~~~~~~~------~l~~~~~~~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 433 AAAIWILGEYGELIENTESAPDILR------SLIENFIEESPEVKLQILTALAKLFK 483 (526)
T ss_dssp HHHHHHHHHHCHHHTTTTHHHHHHH------HHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCcccccccHHHHHH------HHHHhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999988 333332 33344455788999999999999854
No 17
>KOG4199|consensus
Probab=97.95 E-value=0.0083 Score=61.09 Aligned_cols=271 Identities=17% Similarity=0.199 Sum_probs=171.5
Q ss_pred cCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHH-hhccchhhHHHHhhcchhhH
Q psy4828 143 NGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQM-MLRIDEYRIAFINVDGIRTL 221 (448)
Q Consensus 143 ~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~-lL~~~~~R~~f~~~~gv~~L 221 (448)
.+++.....+|+..|..++...|+-.+-+++.-.+..|... ..+.+..-..++|++. -+.++..|+.|.+.+..+.+
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~--~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li 194 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALK--VESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELI 194 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHH
Confidence 45688888999999999988777666777777666666532 2233444446788885 67788999999999888888
Q ss_pred HHhhccCcchHHHHHHHHHHHHhhcChhHHHhh----------hcCCCHHHHHHHhhhhhhhh---hcccCCCchhHHHH
Q psy4828 222 LSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRM----------NKFNVIPTLADILSDSVKEK---NLIEKPTEPALAKE 288 (448)
Q Consensus 222 ~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l----------~~~~iI~~L~~ilk~~~KEK---NLl~~~~~~~~~~~ 288 (448)
.+.|....--.+--+++-++-.|.|+.++...| .+.|+...|++.++.-+--- .+...-..-.+..+
T Consensus 195 ~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E 274 (461)
T KOG4199|consen 195 LQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE 274 (461)
T ss_pred HHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence 877742221133334444555678887765544 23344555555554332211 11111111234557
Q ss_pred HHHHHHhcchHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhh
Q psy4828 289 NCIAMVQSKVLKQLSILEQR-KFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367 (448)
Q Consensus 289 ~~~~mv~~~~l~~l~~L~~r-k~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf 367 (448)
.|.++.+.|++.+|-.+... . |....+-.......|. .|..-|.-.+-+--
T Consensus 275 ~C~~I~e~GGl~tl~~~i~d~n--~~~~r~l~k~~lslLr----alAG~DsvKs~IV~---------------------- 326 (461)
T KOG4199|consen 275 ICKSIAESGGLDTLLRCIDDSN--EQGNRTLAKTCLSLLR----ALAGSDSVKSTIVE---------------------- 326 (461)
T ss_pred HHHHHHHccCHHHHHHHHhhhc--hhhHHHHHHHHHHHHH----HHhCCCchHHHHHH----------------------
Confidence 89999999888766554443 4 5555533333333322 22333333322222
Q ss_pred hhhhHHHHHHHHHhh-ccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhh-cCC-ChhHHHHHHHHHHHHh
Q psy4828 368 HEKNYELLKSLIHLL-ETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLL-SHE-DPNVRYEALLAVQKLM 444 (448)
Q Consensus 368 ~e~~~~llk~L~~lL-~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm-~h~-d~eVr~eAL~avQklm 444 (448)
-+.+-+++.++ ..++||.|++=+|--|.-++=..|.--...=+-||-+...+-| .|| -.-|+++|...+--|+
T Consensus 327 ----~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv 402 (461)
T KOG4199|consen 327 ----KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV 402 (461)
T ss_pred ----hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 23444555554 4589999999999999988888896655555668888888888 587 5889999999999988
Q ss_pred ccC
Q psy4828 445 VHN 447 (448)
Q Consensus 445 ~~~ 447 (448)
++.
T Consensus 403 ~rs 405 (461)
T KOG4199|consen 403 VRS 405 (461)
T ss_pred Hhh
Confidence 763
No 18
>KOG0166|consensus
Probab=97.83 E-value=0.0016 Score=69.68 Aligned_cols=205 Identities=19% Similarity=0.246 Sum_probs=143.4
Q ss_pred HHHHHHHhhccc---hhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHh----hhcCCCHHHHHHHh
Q psy4828 195 VARCLQMMLRID---EYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADR----MNKFNVIPTLADIL 267 (448)
Q Consensus 195 ~~~~l~~lL~~~---~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~----l~~~~iI~~L~~il 267 (448)
+.+++-.++..+ ....+.+. +.++.++..|.......+||++ -|.||.-+..-.+ ....|.+|.++.++
T Consensus 86 a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eA---AWaLTnIAsgtse~T~~vv~agavp~fi~Ll 161 (514)
T KOG0166|consen 86 ATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEA---AWALTNIASGTSEQTKVVVDAGAVPIFIQLL 161 (514)
T ss_pred HHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHH---HHHHHHHhcCchhhccccccCCchHHHHHHh
Confidence 444444444443 45666666 7788999999766667777764 6888876543322 35679999999999
Q ss_pred hhh---hhhh------hcccCCCchhHHHHHHHHHHhcchH-HHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHH
Q psy4828 268 SDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVL-KQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFD 337 (448)
Q Consensus 268 k~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfD 337 (448)
... ++|. |+...++. +---++.+|++ +++..+.... .+..+.+-.= .||+|=
T Consensus 162 ~s~~~~v~eQavWALgNIagds~~------~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW-----------~LsNlc 223 (514)
T KOG0166|consen 162 SSPSADVREQAVWALGNIAGDSPD------CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATW-----------TLSNLC 223 (514)
T ss_pred cCCcHHHHHHHHHHHhccccCChH------HHHHHHhhcchHHHHHHhcccc-chHHHHHHHH-----------HHHHHH
Confidence 655 8888 88887763 22247788865 5555554432 2223332222 233332
Q ss_pred HHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCc
Q psy4828 338 EYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG 417 (448)
Q Consensus 338 eY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~ 417 (448)
+... =|||- +.--+++..|..+| .++|+.|++=||--|..+..+-|+.-+.+-+.|+
T Consensus 224 rgk~---------P~P~~-------------~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gv 280 (514)
T KOG0166|consen 224 RGKN---------PSPPF-------------DVVAPILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGV 280 (514)
T ss_pred cCCC---------CCCcH-------------HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccc
Confidence 2211 23331 22357788888888 6999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 418 KQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 418 K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
-.++.+|+.|+.+.|+--||.|+.-++
T Consensus 281 v~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 281 VPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred hHHHHHHHcCCCcccccHHHhhcccee
Confidence 999999999999999999999987654
No 19
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.69 E-value=0.01 Score=60.58 Aligned_cols=352 Identities=16% Similarity=0.226 Sum_probs=200.1
Q ss_pred cCCCCchhHHhhCCCCHHhHHHHHHhhcCChH---------------HHHH-HHhhchhHHHHHHHHHhcccChhhHHHH
Q psy4828 41 NQRPNWNTYQQSQMISKEDYDFITVFDTASSA---------------KRAE-MLNERRGHAAKTFLNLLEHISKDSTIQY 104 (448)
Q Consensus 41 ~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~---------------~r~~-~~~~~~~~~~~~~l~lL~~~~~~d~vqy 104 (448)
...+|-+-...+|.++- =++++...+.--.+ ++.. .++. ..+.+|+.+|++ +.+|+..-
T Consensus 102 E~~PPIq~VIdaGvVpR-fvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~---~AVPlfiqlL~s-~~~~V~eQ 176 (526)
T COG5064 102 ETSPPIQPVIDAGVVPR-FVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA---GAVPLFIQLLSS-TEDDVREQ 176 (526)
T ss_pred ccCCCchhHHhccccHH-HHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC---CchHHHHHHHcC-chHHHHHH
Confidence 45788898888888753 22333221111111 1111 2222 348899999999 67788766
Q ss_pred HHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCch--hHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHH
Q psy4828 105 ILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDG--FIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKD 182 (448)
Q Consensus 105 vL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~--~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~ 182 (448)
+.=.+..+--|.+..-.+.++. ....|+|.+|.++-. -+.--|--+|+.|....+++.+-+.+..-+..|..
T Consensus 177 avWALGNiAGDS~~~RD~vL~~------galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K 250 (526)
T COG5064 177 AVWALGNIAGDSEGCRDYVLQC------GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK 250 (526)
T ss_pred HHHHhccccCCchhHHHHHHhc------CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH
Confidence 6667788888877777777775 678899999987754 34444556677665433444455566677777777
Q ss_pred HhhhcCChhHHHHHHHHHHhhccchhhH-HHHhhcchhhHHHhhccC-cchHHHHHHHHHHH-HhhcChhHHHhhhcCCC
Q psy4828 183 QLKLANNDYMQSVARCLQMMLRIDEYRI-AFINVDGIRTLLSVLSGR-VNFQIQYQLIFCLW-VLTFNPKLADRMNKFNV 259 (448)
Q Consensus 183 ~L~~~~~~~~~~~~~~l~~lL~~~~~R~-~f~~~~gv~~L~~lL~~~-~~~Ql~Y~~ll~lW-lLSF~~~~~~~l~~~~i 259 (448)
.+-+-+++.+-.+-.+++.+-..+.-.. .+.+.+..+.|+.+|++. ..+|. -++-.+= +.|=+..--..+.+.|.
T Consensus 251 Liys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqt--PalR~vGNIVTG~D~QTqviI~~G~ 328 (526)
T COG5064 251 LIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQT--PALRSVGNIVTGSDDQTQVIINCGA 328 (526)
T ss_pred HHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccC--HHHHhhcCeeecCccceehheeccc
Confidence 6655566776667777776666554433 334444456777877532 22222 2211110 00111111112344566
Q ss_pred HHHHHHHhhh----hhhhh-----hcccCCCchhHHHHHHHHHHhcchH-HHHHHHhcCCCCChHHHHHHHHHHHHHHHH
Q psy4828 260 IPTLADILSD----SVKEK-----NLIEKPTEPALAKENCIAMVQSKVL-KQLSILEQRKFDDEDIVEDVQFLNEKLQAS 329 (448)
Q Consensus 260 I~~L~~ilk~----~~KEK-----NLl~~~~~~~~~~~~~~~mv~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~ 329 (448)
++.+--+|.. ..||. |+...+.+ .+.++++.++. +++..|+.--| ..=+|
T Consensus 329 L~a~~~lLs~~ke~irKEaCWTiSNITAGnte------qiqavid~nliPpLi~lls~ae~---------k~kKE----- 388 (526)
T COG5064 329 LKAFRSLLSSPKENIRKEACWTISNITAGNTE------QIQAVIDANLIPPLIHLLSSAEY---------KIKKE----- 388 (526)
T ss_pred HHHHHHHhcChhhhhhhhhheeecccccCCHH------HHHHHHhcccchHHHHHHHHHHH---------HHHHH-----
Confidence 6666666532 13444 66555432 45588888864 55555543211 00000
Q ss_pred hhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhH------hhHhh
Q psy4828 330 VQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDI------GEYVR 403 (448)
Q Consensus 330 ~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DI------ge~vr 403 (448)
..|- .+-.-||-+.= | +=.+-+-+ .+.+|.|.++|+ -.|..+..||+-.| |+.=|
T Consensus 389 ----ACWA--isNatsgg~~~-P---------D~iryLv~--qG~IkpLc~~L~-~~dNkiiev~LD~~eniLk~Ge~d~ 449 (526)
T COG5064 389 ----ACWA--ISNATSGGLNR-P---------DIIRYLVS--QGFIKPLCDLLD-VVDNKIIEVALDAIENILKVGEQDR 449 (526)
T ss_pred ----HHHH--HHhhhccccCC-c---------hHHHHHHH--ccchhHHHHHHh-ccCccchhhhHHHHHHHHhhhhHHH
Confidence 0110 01111222211 0 00111222 367899999994 67777888886554 44444
Q ss_pred hCcchhHH------HHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 404 HCPRGKHV------IEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 404 ~~p~gr~i------l~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
. ..|+++ +++.||-+.|..|=++.|.+|--.|-.-+-|..+
T Consensus 450 ~-~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 450 L-RYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred H-hccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 3 455555 7799999999999999999998888877766653
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.64 E-value=0.028 Score=60.02 Aligned_cols=288 Identities=21% Similarity=0.228 Sum_probs=163.4
Q ss_pred HHHHHHhccc--ChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcc
Q psy4828 87 KTFLNLLEHI--SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWS 164 (448)
Q Consensus 87 ~~~l~lL~~~--~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~ 164 (448)
..|..+++-+ .+....+-.--.+..+...+|+..-+.. ..+.+=|.+++++++-.|++.++.+.
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~-----------n~l~kdl~~~n~~~~~lAL~~l~~i~--- 107 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILII-----------NSLQKDLNSPNPYIRGLALRTLSNIR--- 107 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHH-----------HHHHHHHCSSSHHHHHHHHHHHHHH----
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHH-----------HHHHHhhcCCCHHHHHHHHhhhhhhc---
Confidence 3344444443 3344445555556667777777444332 34778889999999999999999986
Q ss_pred cCCCChhhHHHHHHHHHHHhhhcCChhHH-HHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHH
Q psy4828 165 VDLLNPSDLNFYLTWLKDQLKLANNDYMQ-SVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWV 243 (448)
Q Consensus 165 ~~~~~~~~l~~~l~~l~~~L~~~~~~~~~-~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWl 243 (448)
+.+-++.++..+...+.++ +.|++ .++-|+..+.+..+ ..+-.. .++.+.++|.+. ++..++.++.++=.
T Consensus 108 ----~~~~~~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p--~~~~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 108 ----TPEMAEPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDP--DLVEDE-LIPKLKQLLSDK-DPSVVSAALSLLSE 178 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCH--CCHHGG-HHHHHHHHTTHS-SHHHHHHHHHHHHH
T ss_pred ----ccchhhHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCH--HHHHHH-HHHHHhhhccCC-cchhHHHHHHHHHH
Confidence 4556678888888888764 44654 45667776655411 111111 256666777432 35555677777766
Q ss_pred hhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHH
Q psy4828 244 LTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLN 323 (448)
Q Consensus 244 LSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 323 (448)
+.-++.... .++|.++..+.... ..+ + ..++..+++++..+......+++-..-++.+.
T Consensus 179 i~~~~~~~~-----~~~~~~~~~L~~~l------~~~-~---------~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~ 237 (526)
T PF01602_consen 179 IKCNDDSYK-----SLIPKLIRILCQLL------SDP-D---------PWLQIKILRLLRRYAPMEPEDADKNRIIEPLL 237 (526)
T ss_dssp HHCTHHHHT-----THHHHHHHHHHHHH------TCC-S---------HHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHH
T ss_pred HccCcchhh-----hhHHHHHHHhhhcc------ccc-c---------hHHHHHHHHHHHhcccCChhhhhHHHHHHHHH
Confidence 622222211 44555555554332 111 1 22334455555544433311111022334444
Q ss_pred HHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhh
Q psy4828 324 EKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVR 403 (448)
Q Consensus 324 e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr 403 (448)
+.|. ++...-.-|.-.=.+.++|.+. ---.++..|+++|. ++|+.+..+|+.-|.++++
T Consensus 238 ~~l~------s~~~~V~~e~~~~i~~l~~~~~--------------~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 238 NLLQ------SSSPSVVYEAIRLIIKLSPSPE--------------LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHSSSHH--------------HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCC
T ss_pred HHhh------ccccHHHHHHHHHHHHhhcchH--------------HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhc
Confidence 4433 2222223233222223333321 12467888999994 8999999999999999999
Q ss_pred hCcchhHHHHHhCcHHHHHhhh-cCCChhHHHHHHHHHHHHhc
Q psy4828 404 HCPRGKHVIEQLGGKQLVMQLL-SHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 404 ~~p~gr~il~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~ 445 (448)
.+ ...+. ....++..+ .++|+.||..||..+.++.-
T Consensus 297 ~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 297 SN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp HC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred cc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence 87 22332 334444454 59999999999999888764
No 21
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.61 E-value=0.00092 Score=56.04 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=88.2
Q ss_pred HHHhcchHH-HHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchH-HHHHHHHhhCCcccCCCCCChhHHHhchhhhhh
Q psy4828 292 AMVQSKVLK-QLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSF-DEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHE 369 (448)
Q Consensus 292 ~mv~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsf-DeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e 369 (448)
++++.|+++ +++.|.... ++-....+..|.+. +.- +++..++..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~--~~~~~~a~~~l~~l--------~~~~~~~~~~~~~------------------------ 47 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD--ENVQREAAWALSNL--------SAGNNDNIQAVVE------------------------ 47 (120)
T ss_pred hHHHcCChHHHHHHHHcCC--HHHHHHHHHHHHHH--------hcCCHHHHHHHHH------------------------
Confidence 355666554 555565443 33344444444444 332 667666655
Q ss_pred hhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 370 KNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 370 ~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.++++.|+++|. ++|+.+...||.-++.++...|..+..+.+.|+-..+.++|.++|.+|+.+|+.++.-|.
T Consensus 48 --~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 48 --AGGLPALVQLLK-SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --CCChHHHHHHHh-CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 478999999994 678999999999999999998899999999999999999999999999999999987653
No 22
>KOG2160|consensus
Probab=97.57 E-value=0.016 Score=59.22 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHH-HHH
Q psy4828 99 DSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLN-FYL 177 (448)
Q Consensus 99 ~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~-~~l 177 (448)
.+-..-+|.-+.+++.+-..... |+.+ ..+.|++..|++.+.-++.+|+.+++.+.+..|. .....++ .++
T Consensus 97 le~ke~ald~Le~lve~iDnAnd-l~~~------ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~-~Qe~v~E~~~L 168 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNAND-LISL------GGLVPLLGYLENSDAELRELAARVIGTAVQNNPK-SQEQVIELGAL 168 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHh-Hhhc------cCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcccH
Confidence 44444445555555544444444 5554 7789999999999999999999999999986542 1222222 244
Q ss_pred HHHHHHhhhcCChhH-HHHHHHHHHhhccchhhH-HHHhhcchhhHHHhhc-cCcchHHHHHHHHHHHHhhcChhHHHh
Q psy4828 178 TWLKDQLKLANNDYM-QSVARCLQMMLRIDEYRI-AFINVDGIRTLLSVLS-GRVNFQIQYQLIFCLWVLTFNPKLADR 253 (448)
Q Consensus 178 ~~l~~~L~~~~~~~~-~~~~~~l~~lL~~~~~R~-~f~~~~gv~~L~~lL~-~~~~~Ql~Y~~ll~lWlLSF~~~~~~~ 253 (448)
+.|...++++++.-+ ..+..+++.++|+.++-. .|.+.+|...|.+++. ++..++++=.+++.+=.|.=...+...
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 555555554444444 346788888888877644 7888999999999996 456788877888887777555444443
No 23
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.01 Score=60.57 Aligned_cols=188 Identities=22% Similarity=0.337 Sum_probs=124.2
Q ss_pred HhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHh----hhcCCCHHHHHHHhhhh---hhhh------hcccC
Q psy4828 213 INVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADR----MNKFNVIPTLADILSDS---VKEK------NLIEK 279 (448)
Q Consensus 213 ~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~----l~~~~iI~~L~~ilk~~---~KEK------NLl~~ 279 (448)
...+.++.+++.+.+...--+++ -+-|.||--...-.. ....|.||.++++|.+. +||. |+...
T Consensus 111 IdaGvVpRfvefm~~~q~~mlqf---EAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 111 IDAGVVPRFVEFMDEIQRDMLQF---EAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred HhccccHHHHHHHHhcchhHHHH---HHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 44566888888885332222333 457888865432111 24579999999999665 6666 66555
Q ss_pred CCchhHHHHHHH-HHHhcchH-HHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCCh
Q psy4828 280 PTEPALAKENCI-AMVQSKVL-KQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSA 357 (448)
Q Consensus 280 ~~~~~~~~~~~~-~mv~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se 357 (448)
++. |. -+++||++ |+|..|.+.+ -++.-|++. .=+|| -+-.|+ .|+-.
T Consensus 188 S~~-------~RD~vL~~galeplL~ll~ss~-------~~ismlRn~----TWtLS-------NlcRGk---nP~P~-- 237 (526)
T COG5064 188 SEG-------CRDYVLQCGALEPLLGLLLSSA-------IHISMLRNA----TWTLS-------NLCRGK---NPPPD-- 237 (526)
T ss_pred chh-------HHHHHHhcCchHHHHHHHHhcc-------chHHHHHHh----HHHHH-------HhhCCC---CCCCc--
Confidence 432 33 37789865 6777777555 233333322 11122 122232 22221
Q ss_pred hHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHH
Q psy4828 358 QFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437 (448)
Q Consensus 358 ~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL 437 (448)
| .+--+.+..|.+++ -|.||.|+.=||-.|..++---.+.-+.+-+.|.-.|+.+||+|++..|.--||
T Consensus 238 --w--------~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal 306 (526)
T COG5064 238 --W--------SNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306 (526)
T ss_pred --h--------HHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence 1 01135667788888 589999999999999998887557778888999999999999999999999999
Q ss_pred HHHHHHh
Q psy4828 438 LAVQKLM 444 (448)
Q Consensus 438 ~avQklm 444 (448)
.+|.-++
T Consensus 307 R~vGNIV 313 (526)
T COG5064 307 RSVGNIV 313 (526)
T ss_pred HhhcCee
Confidence 9987765
No 24
>PTZ00429 beta-adaptin; Provisional
Probab=97.04 E-value=0.88 Score=51.70 Aligned_cols=143 Identities=11% Similarity=0.114 Sum_probs=87.9
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
..-+..+|.. +++.|+-+++.++.++...+|.+..+.+.. +..++..|..-+.+-|...+.+|+ .+.+
T Consensus 181 ~~~L~~LL~D-~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~--------~~~Ll~~L~e~~EW~Qi~IL~lL~---~y~P 248 (746)
T PTZ00429 181 KKDLVELLND-NNPVVASNAAAIVCEVNDYGSEKIESSNEW--------VNRLVYHLPECNEWGQLYILELLA---AQRP 248 (746)
T ss_pred HHHHHHHhcC-CCccHHHHHHHHHHHHHHhCchhhHHHHHH--------HHHHHHHhhcCChHHHHHHHHHHH---hcCC
Confidence 3445566654 678888999999999988877766654443 445666666667777775555553 3333
Q ss_pred CCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc--chhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHH
Q psy4828 166 DLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI--DEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWV 243 (448)
Q Consensus 166 ~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~--~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWl 243 (448)
.+.++...+++.+...|++.++..+-.+++++-.+... ++......+ ...+.++.++++ ...++|-++-.+-+
T Consensus 249 --~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss--~~eiqyvaLr~I~~ 323 (746)
T PTZ00429 249 --SDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRR--DAETQYIVCKNIHA 323 (746)
T ss_pred --CCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCC--CccHHHHHHHHHHH
Confidence 34566778888888888876555555667777766543 222221110 011344455433 46678888877766
Q ss_pred hh
Q psy4828 244 LT 245 (448)
Q Consensus 244 LS 245 (448)
+.
T Consensus 324 i~ 325 (746)
T PTZ00429 324 LL 325 (746)
T ss_pred HH
Confidence 53
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.95 E-value=0.0029 Score=53.00 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
.++++.|+++|. +.++.+...|+.-|+.+....|.++..+-+.|+-+.++++|+++|++|+..|+.|+..|..+
T Consensus 6 ~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 6 AGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred cCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 347889999995 66788999999999999999999999999999999999999999999999999999877543
No 26
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.95 E-value=0.0024 Score=63.11 Aligned_cols=70 Identities=33% Similarity=0.537 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQK 442 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 442 (448)
-+-+++|+.+|+.++||.+...|+.-+|..+ .||..+.++.++||-..|-.+|..+++.||-.|+.|+--
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N 80 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN 80 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence 3567999999988899999999999999975 469999999999999999999999999999999999863
No 27
>KOG4500|consensus
Probab=96.85 E-value=0.12 Score=54.32 Aligned_cols=301 Identities=16% Similarity=0.188 Sum_probs=169.1
Q ss_pred HHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccC-CC---ChhhHHHHHHHHHHH
Q psy4828 108 LIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVD-LL---NPSDLNFYLTWLKDQ 183 (448)
Q Consensus 108 li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~-~~---~~~~l~~~l~~l~~~ 183 (448)
.++|.--...+|-. |.++.- ......++....+++|.-+.++.++.|..+.-+..+ |. +-.+-.-.++.|...
T Consensus 65 C~A~~sk~ev~r~~-F~~~~I--~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~ 141 (604)
T KOG4500|consen 65 CLADRSKNEVERSL-FRNYCI--DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPY 141 (604)
T ss_pred HHHHHhhhHHHHHH-HHHHhh--HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccc
Confidence 45554433334443 555311 123455666677888899999999999987533221 00 000001122222211
Q ss_pred hhh--c-CChhHHHHHHHHH-HhhccchhhHHHHhhcchhhHHHhhc-cCcc-hHHHHHHHH--HHHHhhcChhHHHhh-
Q psy4828 184 LKL--A-NNDYMQSVARCLQ-MMLRIDEYRIAFINVDGIRTLLSVLS-GRVN-FQIQYQLIF--CLWVLTFNPKLADRM- 254 (448)
Q Consensus 184 L~~--~-~~~~~~~~~~~l~-~lL~~~~~R~~f~~~~gv~~L~~lL~-~~~~-~Ql~Y~~ll--~lWlLSF~~~~~~~l- 254 (448)
-+. + +.+|...+-..+. .++..+++|....+.+.+++|..++. +-.+ .|. +-|+ .+=++||..+....+
T Consensus 142 cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~--e~ll~~f~nlls~~~e~~~~~~ 219 (604)
T KOG4500|consen 142 CSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALT--EKLLAPFFNLLSFVCEMLYPFC 219 (604)
T ss_pred cccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHH--HHHHhccccHHHHHHHhhhhhh
Confidence 111 1 1134433334444 38899999999999998898887764 2112 222 2222 244788888766666
Q ss_pred hcCCCHHHHHHHhhhhhhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q psy4828 255 NKFNVIPTLADILSDSVKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQA 328 (448)
Q Consensus 255 ~~~~iI~~L~~ilk~~~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~ 328 (448)
....++-.+++++...++|- -++.+.-+++. .+..+.+.|+...+-.|-+.-=.+.+=.+++.-++-.=+-
T Consensus 220 ~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~---Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el 296 (604)
T KOG4500|consen 220 KDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDL---VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL 296 (604)
T ss_pred ccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcc---eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence 44688889999998887775 33333222221 1234555665433333322211222333444433322111
Q ss_pred HhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcch
Q psy4828 329 SVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG 408 (448)
Q Consensus 329 ~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~g 408 (448)
-+ -+.+=||-..- .|. +.++++.+...+ .|+|...+-.+.--||-|+|.-...
T Consensus 297 ~v-llltGDeSMq~----------L~~---------------~p~~l~~~~sw~-~S~d~~l~t~g~LaigNfaR~D~~c 349 (604)
T KOG4500|consen 297 DV-LLLTGDESMQK----------LHA---------------DPQFLDFLESWF-RSDDSNLITMGSLAIGNFARRDDIC 349 (604)
T ss_pred hh-hhhcCchHHHH----------Hhc---------------CcHHHHHHHHHh-cCCchhHHHHHHHHHHhhhccchHH
Confidence 11 11222221111 222 256899999999 6999999999999999999998888
Q ss_pred hHHHHHhCcHHHHHhhhcC-----CChhHHHHHHHHHHHHh
Q psy4828 409 KHVIEQLGGKQLVMQLLSH-----EDPNVRYEALLAVQKLM 444 (448)
Q Consensus 409 r~il~~lg~K~~vM~Lm~h-----~d~eVr~eAL~avQklm 444 (448)
.+.+++ |.-..+|+++.. +|-++.+-+|-|+--+|
T Consensus 350 i~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 350 IQLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred HHHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 888876 667788887732 44556666777776665
No 28
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.38 E-value=0.0056 Score=42.97 Aligned_cols=39 Identities=38% Similarity=0.551 Sum_probs=35.6
Q ss_pred cchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 406 PRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 406 p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
|+.++.+-+.||-..+++||.|+|++|+.+|++|+.-|.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 677888889999999999999999999999999998653
No 29
>KOG2171|consensus
Probab=96.08 E-value=3.7 Score=47.94 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=104.0
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCC-chhHHHHHHHHHHHHHhc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGS-DGFIINMTAKIIAKIACW 163 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~-d~~I~~~a~~iLt~l~~~ 163 (448)
....|.+++.+..++++.|.+.++.-.++.-.=++.. ...+..--+.+|..+.++ .+-|+++-+.+++.+...
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~------~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~ 110 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLS------AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARN 110 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 6777889999999999999999999999865322221 111122333456666655 778999999999999864
Q ss_pred ccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhh----ccCcchHHHHHHHH
Q psy4828 164 SVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVL----SGRVNFQIQYQLIF 239 (448)
Q Consensus 164 ~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL----~~~~~~Ql~Y~~ll 239 (448)
. .+. .-+.++.+|-...++++++..+++...|..+...-..+.. +-+..+..++ ++... ++.-.++-
T Consensus 111 ~---l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~----~~~~~l~~lf~q~~~d~s~-~vr~~a~r 181 (1075)
T KOG2171|consen 111 D---LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ----PHLDDLLRLFSQTMTDPSS-PVRVAAVR 181 (1075)
T ss_pred c---ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc----hhHHHHHHHHHHhccCCcc-hHHHHHHH
Confidence 4 222 5677888888888887778877888777766554222211 1123334444 22221 13222222
Q ss_pred H---HHHhh-cChhHHHhhhcCCCHHHHHHHhhhhhhh
Q psy4828 240 C---LWVLT-FNPKLADRMNKFNVIPTLADILSDSVKE 273 (448)
Q Consensus 240 ~---lWlLS-F~~~~~~~l~~~~iI~~L~~ilk~~~KE 273 (448)
+ +-... -+....+.|. .++|.++.++...+..
T Consensus 182 A~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~ 217 (1075)
T KOG2171|consen 182 ALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQD 217 (1075)
T ss_pred HHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhc
Confidence 2 11111 1223333332 5799999999777544
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.99 E-value=0.0096 Score=47.81 Aligned_cols=58 Identities=33% Similarity=0.512 Sum_probs=47.0
Q ss_pred HHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 375 lk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
|..|++.|.++.|+.+-..|++-+|++-. | .+-..+.++++|+|+.||..|..++.++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 46788888678999999999999996632 2 2457888999999999999999988653
No 31
>KOG1060|consensus
Probab=95.81 E-value=2.7 Score=47.42 Aligned_cols=304 Identities=19% Similarity=0.271 Sum_probs=175.5
Q ss_pred hHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHH
Q psy4828 59 DYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQF 138 (448)
Q Consensus 59 d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~f 138 (448)
-+-.|-++-...++++.+++ ..+=.||+. ..+-|+..++..+++.+ |+|.+++|++ |.-+
T Consensus 163 AA~AIpKLYsLd~e~k~qL~--------e~I~~LLaD-~splVvgsAv~AF~evC---PerldLIHkn--------yrkl 222 (968)
T KOG1060|consen 163 AAHAIPKLYSLDPEQKDQLE--------EVIKKLLAD-RSPLVVGSAVMAFEEVC---PERLDLIHKN--------YRKL 222 (968)
T ss_pred HHHhhHHHhcCChhhHHHHH--------HHHHHHhcC-CCCcchhHHHHHHHHhc---hhHHHHhhHH--------HHHH
Confidence 34455555555555554432 223345555 56778888888888877 8999999986 7777
Q ss_pred HhhhcCCchhHHHHHHHHHHHHHhcc---c------------------------CC-CChhhHHHHHHHHHHHhhhcCCh
Q psy4828 139 LNLLNGSDGFIINMTAKIIAKIACWS---V------------------------DL-LNPSDLNFYLTWLKDQLKLANND 190 (448)
Q Consensus 139 l~lL~~~d~~I~~~a~~iLt~l~~~~---~------------------------~~-~~~~~l~~~l~~l~~~L~~~~~~ 190 (448)
-++|..=|.+=|.....+|+.-+..+ | .+ ..+.++.-|++-++..|.+.++.
T Consensus 223 C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s 302 (968)
T KOG1060|consen 223 CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS 302 (968)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH
Confidence 77777667776766677776654322 1 11 13667888888888888876666
Q ss_pred hHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhc------ChhHHHhhhc-CC--C--
Q psy4828 191 YMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF------NPKLADRMNK-FN--V-- 259 (448)
Q Consensus 191 ~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~l~~-~~--i-- 259 (448)
.+-.+++++-.++-..+..+ .++.|+.+|+++.+. ||=++-++-.+|. .|.....|.. .+ .
T Consensus 303 VVmA~aql~y~lAP~~~~~~------i~kaLvrLLrs~~~v--qyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 303 VVMAVAQLFYHLAPKNQVTK------IAKALVRLLRSNREV--QYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHhHHHhhCCHHHHHH------HHHHHHHHHhcCCcc--hhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHH
Confidence 65555666665554443322 367888888764433 5677777777764 3333333321 11 1
Q ss_pred ---HHHHHHHhhhh-----hhhh-hcccCCCchhHHHHHHHHHHh----cc----------hHHHHHHHhcCCCCChH-H
Q psy4828 260 ---IPTLADILSDS-----VKEK-NLIEKPTEPALAKENCIAMVQ----SK----------VLKQLSILEQRKFDDED-I 315 (448)
Q Consensus 260 ---I~~L~~ilk~~-----~KEK-NLl~~~~~~~~~~~~~~~mv~----~~----------~l~~l~~L~~rk~~Ded-l 315 (448)
+..|..++.++ .||- --+.... +.++...|+ |+ +--+++.|+.+ |+- +
T Consensus 375 ~lKleiLs~La~esni~~ILrE~q~YI~s~d-----~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llssh---de~Vv 446 (968)
T KOG1060|consen 375 ILKLEILSNLANESNISEILRELQTYIKSSD-----RSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSH---DELVV 446 (968)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCc-----hhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcc---cchhH
Confidence 11222222221 2332 1111111 113333333 11 22334444444 332 3
Q ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHH
Q psy4828 316 VEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVAS 395 (448)
Q Consensus 316 ~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc 395 (448)
.+....++-.|+. .|.- .++++++|.++|++..=|..-|...
T Consensus 447 ~eaV~vIk~Llq~----------------------~p~~----------------h~~ii~~La~lldti~vp~ARA~Ii 488 (968)
T KOG1060|consen 447 AEAVVVIKRLLQK----------------------DPAE----------------HLEILFQLARLLDTILVPAARAGII 488 (968)
T ss_pred HHHHHHHHHHHhh----------------------ChHH----------------HHHHHHHHHHHhhhhhhhhhhceee
Confidence 3344444433332 2322 2899999999997666666666666
Q ss_pred hhHhhHhhhCcchhHHHHHhCcHHHHHhhh----cCCChhHHHHHHHHHHHHhc
Q psy4828 396 YDIGEYVRHCPRGKHVIEQLGGKQLVMQLL----SHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 396 ~DIge~vr~~p~gr~il~~lg~K~~vM~Lm----~h~d~eVr~eAL~avQklm~ 445 (448)
-=|||++...|+- -..|.+.| ++++++||+|.|...-||.+
T Consensus 489 WLige~~e~vpri---------~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 489 WLIGEYCEIVPRI---------APDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred eeehhhhhhcchh---------chHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 7789999887742 22333333 78999999999988877754
No 32
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.69 E-value=0.75 Score=49.15 Aligned_cols=240 Identities=13% Similarity=0.147 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHH-hhccchhhHHHHhhcchhhHHHhhccC----cchHHHHHHHHHHHHhhcCh-hHHHhh-hcCCCHHH
Q psy4828 190 DYMQSVARCLQM-MLRIDEYRIAFINVDGIRTLLSVLSGR----VNFQIQYQLIFCLWVLTFNP-KLADRM-NKFNVIPT 262 (448)
Q Consensus 190 ~~~~~~~~~l~~-lL~~~~~R~~f~~~~gv~~L~~lL~~~----~~~Ql~Y~~ll~lWlLSF~~-~~~~~l-~~~~iI~~ 262 (448)
....-|.+||.+ ++.++.-|..|.+.++...+...|.+. ......|..+=.+.++|... .....+ .+++.+..
T Consensus 47 ~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~ 126 (446)
T PF10165_consen 47 DVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVEL 126 (446)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHH
Confidence 344457899997 778889999999999999999888532 35667778888888899865 566666 44577888
Q ss_pred HHHHhhhhhhhhhccc---CCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCCh--HHHHHHHHHHHHHHHHhhhcchHH
Q psy4828 263 LADILSDSVKEKNLIE---KPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDE--DIVEDVQFLNEKLQASVQDLSSFD 337 (448)
Q Consensus 263 L~~ilk~~~KEKNLl~---~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~De--dl~edl~~L~e~L~~~~~~lTsfD 337 (448)
+++.+....+.+.--. ..++ + -..+..+.++|++=|+.-....+. +-...+..|..+|-... .-+.-+
T Consensus 127 l~~~L~~~l~~~~~~~~~~~~~~---~---~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l-~~~~~~ 199 (446)
T PF10165_consen 127 LTEALERHLKVKSKSSQEPTAPS---P---MDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLL-PPPPSS 199 (446)
T ss_pred HHHHHHHHHhcccccccccCCCC---c---chHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHh-ccCCCC
Confidence 8888877766651111 1111 0 114555667777777755433322 34444555544444431 001111
Q ss_pred HHHHHHhh---CCcccCCCCCChhHH----HhchhhhhhhhHHHHHHHHHhhccC----CC---hhHHHHHHhhHhhHhh
Q psy4828 338 EYKTEVKS---GRLEWSPVHRSAQFW----RENAPRLHEKNYELLKSLIHLLETS----RD---PLVLSVASYDIGEYVR 403 (448)
Q Consensus 338 eY~~El~S---G~L~WSP~H~se~FW----~EN~~kf~e~~~~llk~L~~lL~~S----~D---~~vlaVAc~DIge~vr 403 (448)
.-..++.+ ..|.==|+..-+.=| ..++...+.++..++.+|+++|+.+ .+ ...++=.+.=|..+++
T Consensus 200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~ 279 (446)
T PF10165_consen 200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR 279 (446)
T ss_pred CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence 11111111 001111222111101 1122233678899999999999642 11 1344444455666667
Q ss_pred hCcchhHHHHHh--------------C--cHHHHHhhhcCCChhHHHHH
Q psy4828 404 HCPRGKHVIEQL--------------G--GKQLVMQLLSHEDPNVRYEA 436 (448)
Q Consensus 404 ~~p~gr~il~~l--------------g--~K~~vM~Lm~h~d~eVr~eA 436 (448)
.+...|+.++.. | ...++.+||+|++++||.-+
T Consensus 280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~v 328 (446)
T PF10165_consen 280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAV 328 (446)
T ss_pred hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHH
Confidence 666677776632 2 34599999999999998754
No 33
>PRK09687 putative lyase; Provisional
Probab=95.68 E-value=2.6 Score=42.22 Aligned_cols=120 Identities=12% Similarity=0.130 Sum_probs=65.8
Q ss_pred cCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHh-hhcCChhHHHHHHHHHHhhccch
Q psy4828 129 TKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL-KLANNDYMQSVARCLQMMLRIDE 207 (448)
Q Consensus 129 ~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L-~~~~~~~~~~~~~~l~~lL~~~~ 207 (448)
..+...+.++.++++++|+.++..|..+|+.|-.... .....+..|...+ ..+++.....++.+|..+-...
T Consensus 50 ~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~------~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~- 122 (280)
T PRK09687 50 RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKR------CQDNVFNILNNLALEDKSACVRASAINATGHRCKKN- 122 (280)
T ss_pred cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc------chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-
Confidence 3456778889999999999999999999998742111 1234444455443 2222333345677777642111
Q ss_pred hhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhh
Q psy4828 208 YRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSD 269 (448)
Q Consensus 208 ~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~ 269 (448)
.-|....+..+...+.+. +.+..+.++.++ . .+.....|+.|+..+++
T Consensus 123 ---~~~~~~a~~~l~~~~~D~-~~~VR~~a~~aL---g-------~~~~~~ai~~L~~~L~d 170 (280)
T PRK09687 123 ---PLYSPKIVEQSQITAFDK-STNVRFAVAFAL---S-------VINDEAAIPLLINLLKD 170 (280)
T ss_pred ---cccchHHHHHHHHHhhCC-CHHHHHHHHHHH---h-------ccCCHHHHHHHHHHhcC
Confidence 111111222233333333 456666665555 2 22233457788877654
No 34
>KOG2734|consensus
Probab=95.19 E-value=0.58 Score=49.53 Aligned_cols=205 Identities=20% Similarity=0.272 Sum_probs=123.7
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcchhhHHHhhc-cCcchHHHHHHHHHHHHhhc------ChhH----HHhhhcCCCHH
Q psy4828 193 QSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS-GRVNFQIQYQLIFCLWVLTF------NPKL----ADRMNKFNVIP 261 (448)
Q Consensus 193 ~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~-~~~~~Ql~Y~~ll~lWlLSF------~~~~----~~~l~~~~iI~ 261 (448)
..++|-+..++..|+.-..|.+.+|+++|+++|+ ++..+-+ .++=.+=-||= +.+. ++.+...++|+
T Consensus 102 hd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~i--avvdLLqELTD~Dv~~es~egAevLidaLvdg~vla 179 (536)
T KOG2734|consen 102 HDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAI--AVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLA 179 (536)
T ss_pred HHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHH--HHHHHHHHhhhhcccccccccHHHHHHHHHhccHHH
Confidence 4578999999999999999999999999999996 3333333 33333333432 1233 34446678999
Q ss_pred HHHHHh---hhhhhhh------------hcccCCCchhHHHHHHHHHHhcchHHHH-HHHhcCCCCChHHHHHHHHHHHH
Q psy4828 262 TLADIL---SDSVKEK------------NLIEKPTEPALAKENCIAMVQSKVLKQL-SILEQRKFDDEDIVEDVQFLNEK 325 (448)
Q Consensus 262 ~L~~il---k~~~KEK------------NLl~~~~~~~~~~~~~~~mv~~~~l~~l-~~L~~rk~~Dedl~edl~~L~e~ 325 (448)
.|++-+ .+++||- |++.--+ ..|.+.++.|++..| ..+..+.
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~------~~~~~~~e~~ll~WLL~rl~~k~---------------- 237 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRP------AICTEIVEQGLLSWLLKRLKGKA---------------- 237 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccH------HHHHHHHHhhHHHHHHHHHhccc----------------
Confidence 998766 5667776 4444432 244455555544332 1122221
Q ss_pred HHHHhhhcchHHHHHHHHhhC--------CcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChh------HH
Q psy4828 326 LQASVQDLSSFDEYKTEVKSG--------RLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPL------VL 391 (448)
Q Consensus 326 L~~~~~~lTsfDeY~~El~SG--------~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~------vl 391 (448)
..+.--.|++||.+= ++.|+|.-- ---++++|.-. +..||. ..
T Consensus 238 ------~f~aNk~YasEiLaillq~s~e~~~~~~~l~G---------------iD~lL~~la~y--k~~dP~~~~E~Emm 294 (536)
T KOG2734|consen 238 ------AFDANKQYASEILAILLQNSDENRKLLGPLDG---------------IDVLLRQLAVY--KRHDPATVDEEEMM 294 (536)
T ss_pred ------CcchhHHHHHHHHHHHhccCchhhhhhcCccc---------------HHHHHhhcchh--hccCCCCcCHHHHH
Confidence 123334688888762 344444432 12344444433 355653 33
Q ss_pred HHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 392 SVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 392 aVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
+-.-+.+...+++ |.+|.-.-+--| ..+|.||--.-.--|+-|++.++-.|..
T Consensus 295 eNLFdcLCs~lm~-~~nr~~Fl~~EG-lqLm~Lmlr~Kk~sr~SalkvLd~am~g 347 (536)
T KOG2734|consen 295 ENLFDCLCSLLMA-PANRERFLKGEG-LQLMNLMLREKKVSRGSALKVLDHAMFG 347 (536)
T ss_pred HHHHHHHHHHhcC-hhhhhhhhcccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhC
Confidence 4445555556665 888877654222 5688888666777888999999988854
No 35
>KOG4199|consensus
Probab=95.18 E-value=4.6 Score=41.77 Aligned_cols=336 Identities=17% Similarity=0.179 Sum_probs=202.3
Q ss_pred CCHHhHHHHHHhhcCChHHHHH-HHh-hchhH-HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCC
Q psy4828 55 ISKEDYDFITVFDTASSAKRAE-MLN-ERRGH-AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKR 131 (448)
Q Consensus 55 is~~d~~~ik~~d~~~~~~r~~-~~~-~~~~~-~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~ 131 (448)
..+|-.+++++|-...+..... .+. .+|+. +.-+... |...++.-+..-.|..|..+.+..|.... .
T Consensus 75 ~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~d----a----- 144 (461)
T KOG4199|consen 75 KLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFD----A----- 144 (461)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhc----c-----
Confidence 3456666777776322222222 222 23321 2222233 35545666778888888887766664332 1
Q ss_pred CchhHHHHhhhcC--CchhHHHHHHHHHHHHHhcccCCCChhhH-H-HHHHHHHHHhh-hcCChhHHHHHHHHHHhhccc
Q psy4828 132 EPVCSQFLNLLNG--SDGFIINMTAKIIAKIACWSVDLLNPSDL-N-FYLTWLKDQLK-LANNDYMQSVARCLQMMLRID 206 (448)
Q Consensus 132 ~~~~~~fl~lL~~--~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~-~~l~~l~~~L~-~~~~~~~~~~~~~l~~lL~~~ 206 (448)
..-...+++|.- ++.-+....+..+..-..... ++.+.+ + ..+..+...|. .+-++.+...-.++..|+-.+
T Consensus 145 -~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE--~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dD 221 (461)
T KOG4199|consen 145 -EAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE--VNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDD 221 (461)
T ss_pred -ccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH--HHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCC
Confidence 333456666653 455566666666665321110 111111 1 12222222222 122344555556677778888
Q ss_pred hhhHHHHh----------hcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhh------
Q psy4828 207 EYRIAFIN----------VDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDS------ 270 (448)
Q Consensus 207 ~~R~~f~~----------~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~------ 270 (448)
++|..|-. .+|...|++.+.-..++-.+-.++..+=-|.-..++...+.+.|-+..|..++.++
T Consensus 222 DiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r 301 (461)
T KOG4199|consen 222 DIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNR 301 (461)
T ss_pred ceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHH
Confidence 77766653 34466777777655667777788999999998999999998888899999999764
Q ss_pred --hhhh-hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCC
Q psy4828 271 --VKEK-NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGR 347 (448)
Q Consensus 271 --~KEK-NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~ 347 (448)
.|+- .++..-..++- +=..+|+.|+++.+-.|..|+-+||-+.+..-.....|- |+
T Consensus 302 ~l~k~~lslLralAG~Ds---vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~---------------LR--- 360 (461)
T KOG4199|consen 302 TLAKTCLSLLRALAGSDS---VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC---------------LR--- 360 (461)
T ss_pred HHHHHHHHHHHHHhCCCc---hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH---------------hc---
Confidence 3443 44333222221 223789999999999999999999987665444433321 11
Q ss_pred cccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhc-cCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhh-
Q psy4828 348 LEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE-TSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLL- 425 (448)
Q Consensus 348 L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~-~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm- 425 (448)
||=| +.+|-|-.... .-++-++ .+.-..++=-||+=|--.|-+..+-|.++-.+|+-..||.-+
T Consensus 361 ---~pdh---------sa~~ie~G~a~--~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 361 ---SPDH---------SAKAIEAGAAD--LAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKA 426 (461)
T ss_pred ---Ccch---------HHHHHhcchHH--HHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHh
Confidence 4555 34433322111 2234442 244567888899999999999999999999999999999888
Q ss_pred cCCC-hhHHHHHHH
Q psy4828 426 SHED-PNVRYEALL 438 (448)
Q Consensus 426 ~h~d-~eVr~eAL~ 438 (448)
+|++ +.+.+-||.
T Consensus 427 ~h~tce~~akaALR 440 (461)
T KOG4199|consen 427 NHETCEAAAKAALR 440 (461)
T ss_pred cCccHHHHHHHHHH
Confidence 5776 556666664
No 36
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.04 E-value=0.032 Score=36.87 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=23.8
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 419 QLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 419 ~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
..+++++++++++||+.|..|++.|.-+
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 4688999999999999999999998743
No 37
>KOG0946|consensus
Probab=94.99 E-value=6.6 Score=44.51 Aligned_cols=271 Identities=17% Similarity=0.231 Sum_probs=161.3
Q ss_pred cccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhccc-ChhhHH
Q psy4828 24 DMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHI-SKDSTI 102 (448)
Q Consensus 24 ~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~-~~~d~v 102 (448)
|=+-.+|.+.|.++++|+ +|.|.+ +.|.+ +...| .++|++.|.+- .+++.+
T Consensus 29 DRvessTL~eDRR~A~rg---------------------LKa~sr---kYR~~-Vga~G---mk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 29 DRVESSTLLEDRRDAVRG---------------------LKAFSR---KYREE-VGAQG---MKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HHHhhccchhhHHHHHHH---------------------HHHHHH---HHHHH-HHHcc---cHHHHHHHhhccCCHHHH
Confidence 445566777777776663 455543 34433 44455 89999999886 358899
Q ss_pred HHHHHHHHHHHhhc-------hhH---------HHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccC
Q psy4828 103 QYILVLIDDILQED-------RSR---------VEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVD 166 (448)
Q Consensus 103 qyvL~li~dll~~~-------~~~---------~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~ 166 (448)
+|+|..+.-++..+ .++ ++.|.. ..+-.+.++..+...|-+|+.-|..+++.++...+.
T Consensus 81 k~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik-----~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~ 155 (970)
T KOG0946|consen 81 KYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIK-----NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT 155 (970)
T ss_pred HHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHc-----CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH
Confidence 99999988887544 222 334433 446678889999988999999999999999976653
Q ss_pred CC------ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhH-HHHhhcchhhHHHhhcc----CcchHHHH
Q psy4828 167 LL------NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRI-AFINVDGIRTLLSVLSG----RVNFQIQY 235 (448)
Q Consensus 167 ~~------~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~-~f~~~~gv~~L~~lL~~----~~~~Ql~Y 235 (448)
.. ...++.++++-|.+. .......++-.|+++.+....-+ ++.-.+...+|++++.+ ..|+=+-=
T Consensus 156 e~q~~ll~~P~gIS~lmdlL~Ds----rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveD 231 (970)
T KOG0946|consen 156 ELQDALLVSPMGISKLMDLLRDS----REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVED 231 (970)
T ss_pred HHHHHHHHCchhHHHHHHHHhhh----hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHH
Confidence 22 123334444444421 11112236677888877765544 33334456777887741 12343322
Q ss_pred HHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhh--hh-h-------h------------hcccCCCchhHHHHHHHHH
Q psy4828 236 QLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDS--VK-E-------K------------NLIEKPTEPALAKENCIAM 293 (448)
Q Consensus 236 ~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~--~K-E-------K------------NLl~~~~~~~~~~~~~~~m 293 (448)
-..+..=+|=.|..--..|.+.+-||.|..+|..- .- | | -|++-..++.....|-.+|
T Consensus 232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l 311 (970)
T KOG0946|consen 232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL 311 (970)
T ss_pred HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 22333334444433333346668899999887432 11 1 1 3344443444443343689
Q ss_pred HhcchHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHhh
Q psy4828 294 VQSKVLKQLS-ILEQRKFDDEDIVEDVQFLNEKLQASVQ 331 (448)
Q Consensus 294 v~~~~l~~l~-~L~~rk~~Dedl~edl~~L~e~L~~~~~ 331 (448)
+.++++..|- .|..-.-.-+=+.+.+-.+.++.-.+..
T Consensus 312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~ 350 (970)
T KOG0946|consen 312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNAR 350 (970)
T ss_pred HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchH
Confidence 9998876554 4444434444567778888877655543
No 38
>KOG1062|consensus
Probab=94.57 E-value=11 Score=42.95 Aligned_cols=323 Identities=21% Similarity=0.255 Sum_probs=167.0
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhc-------CCCchhHHHHhhhcCCchhHHHHHHHHH
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQT-------KREPVCSQFLNLLNGSDGFIINMTAKII 157 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~-------~~~~~~~~fl~lL~~~d~~I~~~a~~iL 157 (448)
+...|.++|.. .+.-|+--.+.++-+|+...|+....|.+.... -...+|+|=.+.=.-+|||+|.+.+++|
T Consensus 180 f~~~~~~lL~e-k~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 180 FVIAFRKLLCE-KHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred hhHHHHHHHhh-cCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence 44445566665 456688889999999999998888888774210 0111222222222225999999999999
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHHHhhhc------CChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcch
Q psy4828 158 AKIACWSVDLLNPSDLNFYLTWLKDQLKLA------NNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNF 231 (448)
Q Consensus 158 t~l~~~~~~~~~~~~l~~~l~~l~~~L~~~------~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~ 231 (448)
..|-+..+ +.-+.+-+.|.+..+.. .+..+--|++++..+....+.|.. ++..|-.-|.++ .-
T Consensus 259 riLGq~d~-----daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lrvl-----ainiLgkFL~n~-d~ 327 (866)
T KOG1062|consen 259 RILGQNDA-----DASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVL-----AINILGKFLLNR-DN 327 (866)
T ss_pred HHhcCCCc-----cHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHH-----HHHHHHHHhcCC-cc
Confidence 98865432 22233334444433321 233344477888888888888876 334444433221 11
Q ss_pred HHHHHHH-HHHHHhhcChhHHHhhhcCCCHHHHHHHhhhh---hhhh-----hcccCCCchhHHHHHHHHHHhcchHHHH
Q psy4828 232 QIQYQLI-FCLWVLTFNPKLADRMNKFNVIPTLADILSDS---VKEK-----NLIEKPTEPALAKENCIAMVQSKVLKQL 302 (448)
Q Consensus 232 Ql~Y~~l-l~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~---~KEK-----NLl~~~~~~~~~~~~~~~mv~~~~l~~l 302 (448)
.+-|=++ ..+-+..+++.+++.=.. .+++.|++. +|-+ -.+.+.. |+..|++ .++
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrHr~-----tIleCL~DpD~SIkrralELs~~lvn~~-------Nv~~mv~----eLl 391 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRHRS-----TILECLKDPDVSIKRRALELSYALVNES-------NVRVMVK----ELL 391 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHHHH-----HHHHHhcCCcHHHHHHHHHHHHHHhccc-------cHHHHHH----HHH
Confidence 1122111 123356677777665221 344444332 3333 1222221 3444554 223
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHHhhhcch--HHHHHHHHhh-CCc-ccCCCCCChhHHHhchhhh-hhhhHHHHHH
Q psy4828 303 SILEQRKFDDEDIVEDVQFLNEKLQASVQDLSS--FDEYKTEVKS-GRL-EWSPVHRSAQFWRENAPRL-HEKNYELLKS 377 (448)
Q Consensus 303 ~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTs--fDeY~~El~S-G~L-~WSP~H~se~FW~EN~~kf-~e~~~~llk~ 377 (448)
.-|..- |+|.+.|+..=...+.+.+.-=.. +|...+=+.. |.+ +-.-+| .|=+==+.-| ++..|.+.|.
T Consensus 392 ~fL~~~---d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~---nll~LIa~~~~e~~~y~~~rL 465 (866)
T KOG1062|consen 392 EFLESS---DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVN---NLLRLIANAFQELHEYAVLRL 465 (866)
T ss_pred HHHHhc---cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHH---HHHHHHhcCCcchhhHHHHHH
Confidence 333322 888888888766666666553111 2333332222 221 112222 1111111223 3345666654
Q ss_pred HHHhhcc----CCChhHHHHHHhhHhhHhhhCcch-----------hHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHH
Q psy4828 378 LIHLLET----SRDPLVLSVASYDIGEYVRHCPRG-----------KHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQK 442 (448)
Q Consensus 378 L~~lL~~----S~D~~vlaVAc~DIge~vr~~p~g-----------r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 442 (448)
-..+... .+.+..+.||.-.||||-.+.=.| -.++..+- ..+|..+ .+..+|-.||-|+=|
T Consensus 466 y~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~--~v~~~~~--s~~~tk~yal~Al~K 541 (866)
T KOG1062|consen 466 YLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLE--KVLMSHS--SDSTTKGYALTALLK 541 (866)
T ss_pred HHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHH--HHHHhcc--chHHHHHHHHHHHHH
Confidence 4444421 344556999999999998554333 22322211 1222222 459999999999988
Q ss_pred Hhc
Q psy4828 443 LMV 445 (448)
Q Consensus 443 lm~ 445 (448)
|=+
T Consensus 542 LSs 544 (866)
T KOG1062|consen 542 LSS 544 (866)
T ss_pred HHh
Confidence 743
No 39
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.40 E-value=0.094 Score=35.80 Aligned_cols=38 Identities=32% Similarity=0.423 Sum_probs=33.8
Q ss_pred cchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 406 PRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 406 p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
|..+..+.+.|+-+.+++||.++|++|+++|+.|+.-|
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999998765
No 40
>KOG1789|consensus
Probab=94.35 E-value=4.1 Score=47.58 Aligned_cols=319 Identities=16% Similarity=0.155 Sum_probs=178.3
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcC-CchhHHHHHHHHHHHHHhcccCCCChhhHHHHHH
Q psy4828 100 STIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNG-SDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLT 178 (448)
Q Consensus 100 d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~-~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~ 178 (448)
.-++-.|+-+..++..+|..+..|.+-.... .-|+-|..+|.. .++-|+.+|+.++..+.++.+ +.+.-.-...+.
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~li--g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLI--GNFPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhh--cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHH
Confidence 3578889999999999999998887643221 346667777764 588999999999998887654 222111122334
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhh-cC
Q psy4828 179 WLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMN-KF 257 (448)
Q Consensus 179 ~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~-~~ 257 (448)
.|-..|++ .+.+.+-+...|-.|..+++.-+.-.+++|...|.+++-+....|.--++.-.+-=|+=++-...... ..
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 44445555 45666667888888889998888888899999999888666666765555554444443332222210 00
Q ss_pred -CCHH-HHHHHhhhhhhhh--hcccCCCc-hh--H---HHHHHHHHHhcchHHHHHHHhcC---CCCChHHHHHHHHHHH
Q psy4828 258 -NVIP-TLADILSDSVKEK--NLIEKPTE-PA--L---AKENCIAMVQSKVLKQLSILEQR---KFDDEDIVEDVQFLNE 324 (448)
Q Consensus 258 -~iI~-~L~~ilk~~~KEK--NLl~~~~~-~~--~---~~~~~~~mv~~~~l~~l~~L~~r---k~~Dedl~edl~~L~e 324 (448)
.+.| .+++++++.+ |. ...+...+ ++ | ........|..=+.+.-++=+.. +|.-||-.
T Consensus 1896 ~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqs-------- 1966 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQS-------- 1966 (2235)
T ss_pred HHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhh--------
Confidence 1122 3456666666 55 11111100 00 0 00001111111111222221111 23322211
Q ss_pred HHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCC-ChhHHHHHHhhHhhHhh
Q psy4828 325 KLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSR-DPLVLSVASYDIGEYVR 403 (448)
Q Consensus 325 ~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~-D~~vlaVAc~DIge~vr 403 (448)
..|.|-..|..-|-.------...+|=..|-++|- -+++.++.+++...+ ....+-...-..-+++|
T Consensus 1967 ---------Ag~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL---~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r 2034 (2235)
T KOG1789|consen 1967 ---------AGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL---TELLEKVLELMSRPTPEQHELDLLTKAFVELVR 2034 (2235)
T ss_pred ---------cchhhhccCcccchhhhHHHhhCCCCcccCHHHHH---HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHH
Confidence 22333333333321110000112334344444443 367888888885321 11122333334567899
Q ss_pred hCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 404 HCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 404 ~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
+||.=-+.+--+|--.++.+-|.|.|..+-+-|+.-+-.|
T Consensus 2035 ~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~L 2074 (2235)
T KOG1789|consen 2035 HHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHEL 2074 (2235)
T ss_pred hCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHH
Confidence 9999999999999999999999999987777777655443
No 41
>KOG2160|consensus
Probab=94.32 E-value=2.3 Score=43.85 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=115.7
Q ss_pred HHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhh
Q psy4828 62 FITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNL 141 (448)
Q Consensus 62 ~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~l 141 (448)
.|-..-+-++..+.++++.++ .+.++.+|++....++...+|--|+-+++..+--+..|..+ +.|.-+.+.
T Consensus 147 Vigt~~qNNP~~Qe~v~E~~~---L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~------~G~~~L~~v 217 (342)
T KOG2160|consen 147 VIGTAVQNNPKSQEQVIELGA---LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL------NGYQVLRDV 217 (342)
T ss_pred HHHHHHhcCHHHHHHHHHccc---HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc------CCHHHHHHH
Confidence 444445555567777887776 88889999975556666999999999999999888889887 669999999
Q ss_pred hcC--CchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhH-HHHhhc
Q psy4828 142 LNG--SDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRI-AFINVD 216 (448)
Q Consensus 142 L~~--~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~-~f~~~~ 216 (448)
|.+ .+.-.+-+|+.+++.|++.... ..+.+ ..|-..+.....+-..+....++..+..++....-|. .|....
T Consensus 218 l~~~~~~~~lkrK~~~Ll~~Ll~~~~s--~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~ 295 (342)
T KOG2160|consen 218 LQSNNTSVKLKRKALFLLSLLLQEDKS--DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLL 295 (342)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHhhhh--hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 999 5777889999999999976531 11111 1111111111111123344456666666666666666 443333
Q ss_pred chhhHH----HhhccCcchHHHHHHHHHHHHhhcChhH
Q psy4828 217 GIRTLL----SVLSGRVNFQIQYQLIFCLWVLTFNPKL 250 (448)
Q Consensus 217 gv~~L~----~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~ 250 (448)
+...++ ..++...-.+..|+.+--+|..-|+...
T Consensus 296 ~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~ 333 (342)
T KOG2160|consen 296 NLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPS 333 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 333222 2333333567788888889988887654
No 42
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.88 E-value=1 Score=44.79 Aligned_cols=176 Identities=13% Similarity=0.127 Sum_probs=114.5
Q ss_pred cccccccHHHHHHHHHhcCCCCchhHHhhCCCCHH-------hHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhccc
Q psy4828 24 DMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKE-------DYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHI 96 (448)
Q Consensus 24 ~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~-------d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~ 96 (448)
.+.+.+..|+++.+....=.+| .+|.. -+.+++-+-+ .++.|..+++.+-+.|.-+|++..++.
T Consensus 36 s~G~i~~LLqEIisiYp~l~~~--------~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~ 106 (262)
T PF04078_consen 36 SFGTIAALLQEIISIYPALSPP--------NLTARQSNRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKT 106 (262)
T ss_dssp STTHHHHHHHHHHGGGGGTTTT-----------HHHHHHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----S
T ss_pred CCChHHHHHHHHHHHcccCCCc--------ccCHHHHHHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccc
Confidence 3444567788888776665433 23332 2446666666 356899999999999999999988885
Q ss_pred ChhhHH-HHHHHHHHHHHhh-chhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccC----CCCh
Q psy4828 97 SKDSTI-QYILVLIDDILQE-DRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVD----LLNP 170 (448)
Q Consensus 97 ~~~d~v-qyvL~li~dll~~-~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~----~~~~ 170 (448)
..-+.+ =.+|-.|+.|+.. +++-+.++... +-.+..++.+.......+..|.+|+.+++.+... +.+.
T Consensus 107 r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~t------EiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~ 180 (262)
T PF04078_consen 107 RPFEYLRLTSLGVIGALVKTDDPEVISFLLQT------EIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTA 180 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--HHHHHHHHCT------THHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSH
T ss_pred cccchhhHhHHHHHHHHHcCCcHHHHHHHHhh------chHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCH
Confidence 443444 5678899999964 46777766553 7788899999999999999999999999865421 1122
Q ss_pred hhHHHHHHHHHH---Hhh-hcCChhHHHHHHHHHHhhccchhhHHHHh
Q psy4828 171 SDLNFYLTWLKD---QLK-LANNDYMQSVARCLQMMLRIDEYRIAFIN 214 (448)
Q Consensus 171 ~~l~~~l~~l~~---~L~-~~~~~~~~~~~~~l~~lL~~~~~R~~f~~ 214 (448)
+-+......|.. ++. .+++.....+++|+.+|..++..|..+..
T Consensus 181 eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 181 ERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 222222233333 222 23455667799999999999999998763
No 43
>KOG2122|consensus
Probab=93.65 E-value=5.6 Score=47.94 Aligned_cols=317 Identities=17% Similarity=0.183 Sum_probs=191.9
Q ss_pred hHHHHHHHhhhcC------CCchhHH-HHhhhcCCch---hHHHHHHHHHHHHHhcccCCC----C------hhhHHHHH
Q psy4828 118 SRVEIFKEYSQTK------REPVCSQ-FLNLLNGSDG---FIINMTAKIIAKIACWSVDLL----N------PSDLNFYL 177 (448)
Q Consensus 118 ~~~~~f~~~~~~~------~~~~~~~-fl~lL~~~d~---~I~~~a~~iLt~l~~~~~~~~----~------~~~l~~~l 177 (448)
+.+.-|++..... .....-| ++.+|+.+|. -..-.|..-|-.|+...++.- + -+.+..|.
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC 292 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC 292 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 5555566654322 1122333 4566666543 344445555666665433211 1 12233444
Q ss_pred HHHHHHhhhc------CChhHHH--HHHHHHHhhccchhhHHHHhhcchhhHHHhhc-----------cCcchHHHHHHH
Q psy4828 178 TWLKDQLKLA------NNDYMQS--VARCLQMMLRIDEYRIAFINVDGIRTLLSVLS-----------GRVNFQIQYQLI 238 (448)
Q Consensus 178 ~~l~~~L~~~------~~~~~~~--~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~-----------~~~~~Ql~Y~~l 238 (448)
.++...++.. .+.+.+. ++..|+.+==.++||+..-+.+|+..|.++|. .....-|--|++
T Consensus 293 ~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~ 372 (2195)
T KOG2122|consen 293 ETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAG 372 (2195)
T ss_pred HHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 4554555432 2345454 35777777788999999999999998888761 123466777999
Q ss_pred HHHHHhhcChhHHHh-hhc-CCCHHHHHHHhhhhhhhh---------hcccCCCchhHHHH-----HHHHHHhc----c-
Q psy4828 239 FCLWVLTFNPKLADR-MNK-FNVIPTLADILSDSVKEK---------NLIEKPTEPALAKE-----NCIAMVQS----K- 297 (448)
Q Consensus 239 l~lWlLSF~~~~~~~-l~~-~~iI~~L~~ilk~~~KEK---------NLl~~~~~~~~~~~-----~~~~mv~~----~- 297 (448)
+++==|||-....+. ++. .|++..++.+|..++-|- ||-=.+ +...++- .+.++..| +
T Consensus 373 MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRA-D~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 373 MALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRA-DSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccc-cccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 999999998765444 443 489999999998888776 332111 1111100 01111111 1
Q ss_pred ------hHHHHHHHhcCCCCC-h---HHHHHHHHHHHHHHHHhhhcchHHHHHHHHhh--CCccc--CCCCCChhHHHhc
Q psy4828 298 ------VLKQLSILEQRKFDD-E---DIVEDVQFLNEKLQASVQDLSSFDEYKTEVKS--GRLEW--SPVHRSAQFWREN 363 (448)
Q Consensus 298 ------~l~~l~~L~~rk~~D-e---dl~edl~~L~e~L~~~~~~lTsfDeY~~El~S--G~L~W--SP~H~se~FW~EN 363 (448)
+|..|=||+...=.. - ++-..|.||.-+|.=.-+ -...+=|+| |.|+. |=+-+.|.+
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~q-----s~tLaIIEsaGGILRNVSS~IAt~E~y---- 522 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQ-----SNTLAIIESAGGILRNVSSLIATCEDY---- 522 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCC-----cchhhhhhcCccHHHHHHhHhhccchH----
Confidence 344444665543221 1 233567777777532200 022333444 44554 222222221
Q ss_pred hhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 364 APRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 364 ~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
+.+ ..++-.|..|.+.| +|..=+++.-||--|--+.-..|+-.+.|-++||-..+-+|+.+.+..+..-+-.|+--+
T Consensus 523 -RQI-LR~~NCLq~LLQ~L-KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 523 -RQI-LRRHNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNL 599 (2195)
T ss_pred -HHH-HHHhhHHHHHHHHh-hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 111 12366788899999 688889999999999999988999999999999999999999999999999999988888
Q ss_pred hccC
Q psy4828 444 MVHN 447 (448)
Q Consensus 444 m~~~ 447 (448)
|-|+
T Consensus 600 ln~R 603 (2195)
T KOG2122|consen 600 LNFR 603 (2195)
T ss_pred hcCC
Confidence 7653
No 44
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.04 E-value=0.94 Score=42.03 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=66.8
Q ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHH
Q psy4828 98 KDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYL 177 (448)
Q Consensus 98 ~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l 177 (448)
++.+..+++..++||+.-.|+.++-+.+ .+.+.|..+++.++..|+.+|+.|+..+-.+..+.-+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~-----------~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLP-----------NLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHH-----------HHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH
Confidence 3567789999999999888877763332 25788999999999999999999998876555544334443
Q ss_pred HHHHHHhhhcCChhHHHHHHHHHHhhccc
Q psy4828 178 TWLKDQLKLANNDYMQSVARCLQMMLRID 206 (448)
Q Consensus 178 ~~l~~~L~~~~~~~~~~~~~~l~~lL~~~ 206 (448)
.-+ .-++++....+..++.+++...
T Consensus 70 ~~l----~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 70 KLL----VDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHH----cCCCHHHHHHHHHHHHHHHHhc
Confidence 333 3224455556778888776663
No 45
>PF05536 Neurochondrin: Neurochondrin
Probab=92.91 E-value=9.1 Score=42.09 Aligned_cols=131 Identities=15% Similarity=0.273 Sum_probs=84.0
Q ss_pred HHHHHHhcccChhhHHHHH-HHHHHHHHhhchhHH----HHHHHhhhcCCCchhHHHHhhhcC-------CchhHHHHHH
Q psy4828 87 KTFLNLLEHISKDSTIQYI-LVLIDDILQEDRSRV----EIFKEYSQTKREPVCSQFLNLLNG-------SDGFIINMTA 154 (448)
Q Consensus 87 ~~~l~lL~~~~~~d~vqyv-L~li~dll~~~~~~~----~~f~~~~~~~~~~~~~~fl~lL~~-------~d~~I~~~a~ 154 (448)
.-.+++|+. .+ |+-+++ |.++--++..++... .+|.. -++.-+-++|.. +..--..+|.
T Consensus 8 ~~c~~lL~~-~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-------ig~~Fl~RLL~t~~~~~~~~~~~~~~Lav 78 (543)
T PF05536_consen 8 EKCLSLLKS-AD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEA-------IGFKFLDRLLRTGSVPSDCPPEEYLSLAV 78 (543)
T ss_pred HHHHHHhcc-CC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-------cChhHHHHHhcCCCCCCCCCHHHHHHHHH
Confidence 334667776 33 665554 557777776655221 23422 334444566665 2334566788
Q ss_pred HHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhcc
Q psy4828 155 KIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANN-DYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSG 227 (448)
Q Consensus 155 ~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~-~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~ 227 (448)
.+|+.+.... +-....++..-+-.|.+.+.+.+. ..+..+.+||..+...++-++.|.+.++++.|.+.+.+
T Consensus 79 svL~~f~~~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 79 SVLAAFCRDP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHHHHHcCCh-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh
Confidence 8888876522 112333444444455555555445 67778999999999999999999999999999998865
No 46
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.91 E-value=0.16 Score=37.50 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=38.5
Q ss_pred hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 389 LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 389 ~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
.+-.-||.-||.++...|.--.-. .-.+-..++.+|++++++||..|+.|+..|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 455668888888776555332221 113557888999999999999999998754
No 47
>KOG0946|consensus
Probab=92.81 E-value=21 Score=40.68 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=89.6
Q ss_pred chhHHHHhhhcCC--chhHHHHHHHHHHHHHhcccCC--CC-hhhHHHHHHHHHHHhhhcCC------------h-hH-H
Q psy4828 133 PVCSQFLNLLNGS--DGFIINMTAKIIAKIACWSVDL--LN-PSDLNFYLTWLKDQLKLANN------------D-YM-Q 193 (448)
Q Consensus 133 ~~~~~fl~lL~~~--d~~I~~~a~~iLt~l~~~~~~~--~~-~~~l~~~l~~l~~~L~~~~~------------~-~~-~ 193 (448)
..-.||+..|+++ |+=+.--++-++..++..+..+ ++ ......+-.|+.+++..+.. + ++ .
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 5677899999886 7778888888888888766311 21 22356788899887753211 1 11 1
Q ss_pred HHHHHHHHhhccc--hhhHHHHhhc-chhhHHHhhccC-cchHHHHHHHHHHHHhhcChhHHHhhhcC-CCHHHHHHHhh
Q psy4828 194 SVARCLQMMLRID--EYRIAFINVD-GIRTLLSVLSGR-VNFQIQYQLIFCLWVLTFNPKLADRMNKF-NVIPTLADILS 268 (448)
Q Consensus 194 ~~~~~l~~lL~~~--~~R~~f~~~~-gv~~L~~lL~~~-~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~-~iI~~L~~ilk 268 (448)
.+++.+..+++.. +.|..+.... |+..++.+|.+. -.+.= .+++.+=-|+-....++.+..+ ++...|..|+.
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRN--e~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRN--EAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhch--hHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 3678888887665 5677666665 899999988632 23332 6666666777777777777654 56667777764
Q ss_pred h
Q psy4828 269 D 269 (448)
Q Consensus 269 ~ 269 (448)
+
T Consensus 219 e 219 (970)
T KOG0946|consen 219 E 219 (970)
T ss_pred h
Confidence 4
No 48
>KOG1293|consensus
Probab=92.74 E-value=19 Score=40.03 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=75.0
Q ss_pred HHHHHHHHhhCCcccCCCCCChhHHH---hchhhhh---------hhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhh
Q psy4828 336 FDEYKTEVKSGRLEWSPVHRSAQFWR---ENAPRLH---------EKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVR 403 (448)
Q Consensus 336 fDeY~~El~SG~L~WSP~H~se~FW~---EN~~kf~---------e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr 403 (448)
|++|.+|-.. --=|+|+|+.|=+ +-..-|. -+.-.+.-.|+++|. -.+.-+..++.--|.-+|=
T Consensus 373 ~l~~~t~~~l---~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 373 ILETTTESHL---MCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHH---ccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHHHHh
Confidence 4455544433 3469999999944 3333332 245567778888883 2344555566666666777
Q ss_pred hCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 404 HCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 404 ~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.|..=|.-.-..||-+.+-++...+|+++|..+++++--+|=
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 777777777788999999999999999999999999987773
No 49
>KOG1048|consensus
Probab=92.17 E-value=0.35 Score=54.01 Aligned_cols=67 Identities=30% Similarity=0.358 Sum_probs=61.5
Q ss_pred HHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 377 SLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 377 ~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.-+..| .+.||.+.+.|..=|.+.+.-...+|..+.++||-.++..|+.|++++|.++|+.|+-.|+
T Consensus 237 e~i~mL-~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLv 303 (717)
T KOG1048|consen 237 EVISML-MSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLV 303 (717)
T ss_pred HHHHHH-hccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhh
Confidence 345566 3899999999999999999999999999999999999999999999999999999998775
No 50
>KOG1222|consensus
Probab=90.00 E-value=32 Score=37.35 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcchhHHH-HHhCcHHHHHhhhcCCChhHHHH
Q psy4828 372 YELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRGKHVI-EQLGGKQLVMQLLSHEDPNVRYE 435 (448)
Q Consensus 372 ~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~gr~il-~~lg~K~~vM~Lm~h~d~eVr~e 435 (448)
-+++-.|+++|... .|...++=..+=..+|++| ...|.++ .+-..-.-+..||...|.+||+=
T Consensus 589 a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkV 653 (791)
T KOG1222|consen 589 AKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKV 653 (791)
T ss_pred cccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHH
Confidence 46899999999643 4555555567888899999 5555554 44445567889999999999973
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=89.99 E-value=34 Score=37.64 Aligned_cols=317 Identities=15% Similarity=0.178 Sum_probs=178.4
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
..+..|++++.+.+...++.-++.++.-+. ..|+-.+.|.+. +..+.+.....+ .++..+.|++++..++..
T Consensus 98 ~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~------g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 98 SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLES------GAVPALCEIIPN-QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhc------CCHHHHHHHHHh-CcchHHHHHHHHHHHHHh
Confidence 347788899988666688888888888888 445555556664 455566666654 778899999999998775
Q ss_pred ccCCC---ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhh------HHHHhhcchhhHHHhhccCcchHH-
Q psy4828 164 SVDLL---NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR------IAFINVDGIRTLLSVLSGRVNFQI- 233 (448)
Q Consensus 164 ~~~~~---~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R------~~f~~~~gv~~L~~lL~~~~~~Ql- 233 (448)
..... ....+..++..++...+...+.-.......|..+|...+.. ..=|-......|-.+|+++++.+-
T Consensus 170 ~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R 249 (543)
T PF05536_consen 170 LGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQR 249 (543)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHH
Confidence 43111 34455667777777665433443345677788888877432 122333344556667766554221
Q ss_pred -----HH----HHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhh--hcccCCCchhHHH-----HHHHHHHhcc
Q psy4828 234 -----QY----QLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEK--NLIEKPTEPALAK-----ENCIAMVQSK 297 (448)
Q Consensus 234 -----~Y----~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEK--NLl~~~~~~~~~~-----~~~~~mv~~~ 297 (448)
.. ++.-+=|+++-.+ .....+.-.+++++...+|=- .|+.....+.... -.|..+++.-
T Consensus 250 ~~al~Laa~Ll~~~G~~wl~~~~~-----~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~ 324 (543)
T PF05536_consen 250 DPALNLAASLLDLLGPEWLFADDK-----KSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHF 324 (543)
T ss_pred HHHHHHHHHHHHHhChHhhcCCCC-----CCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHH
Confidence 11 1122336665554 122245566677666655544 2222222211111 1334455554
Q ss_pred hHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCCh----------hHHH-hchhh
Q psy4828 298 VLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSA----------QFWR-ENAPR 366 (448)
Q Consensus 298 ~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se----------~FW~-EN~~k 366 (448)
+--+++.+.+.... -+ .+.+..+...|.+.+.- -=+|...+.-. .+++. ..|- |.-.-
T Consensus 325 I~~l~~~~~~~~~~-~~-~~~l~kl~~~l~e~~~~---vle~L~~~~d~------~~~d~~~vlAsvR~L~~WLaEe~~~ 393 (543)
T PF05536_consen 325 IGYLVRSLEEESLD-LD-PDTLLKLRTSLSETFSA---VLEYLRDVWDE------SQKDPDFVLASVRVLGAWLAEETSA 393 (543)
T ss_pred HHHHHhccccccCC-CC-HHHHHHHHHHHHHHHHH---HHHHHHHhhhc------cccchHHHHHHHHHHHHHHHhChHH
Confidence 44444444434321 11 45555555555555433 23455444331 11222 2343 55555
Q ss_pred hhhhhHHHHHHHHHhhccCCCh---------hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhh
Q psy4828 367 LHEKNYELLKSLIHLLETSRDP---------LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLL 425 (448)
Q Consensus 367 f~e~~~~llk~L~~lL~~S~D~---------~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm 425 (448)
+.+.=++++..++++...+.+. ..+.-..=-+-+++-. +.||+++-..||-..+++.+
T Consensus 394 lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e-~~gr~~l~~~~g~~~l~~~l 460 (543)
T PF05536_consen 394 LRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE-EEGRKILLSNGGWKLLCDDL 460 (543)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc-HHHHHHHHhCCcHHHHHHHH
Confidence 6677788888888888654322 1233333334444444 89999999999988888765
No 52
>KOG2734|consensus
Probab=89.70 E-value=32 Score=36.89 Aligned_cols=262 Identities=19% Similarity=0.249 Sum_probs=144.4
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhch-----hHHHHHHHhhhcCCCchhHHHHhhhcCC------chhHHHHHH
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDR-----SRVEIFKEYSQTKREPVCSQFLNLLNGS------DGFIINMTA 154 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~-----~~~~~f~~~~~~~~~~~~~~fl~lL~~~------d~~I~~~a~ 154 (448)
+..|+.||++ .+.|+.-.++.|+-++-.+|- +-++.+.+.- -+....+.++.-+.|= +.+=.+-++
T Consensus 127 V~slL~LLgH-eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaL--vdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 127 VQSLLELLGH-ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDAL--VDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred HHHHHHHhcC-CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHH--HhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 8889999999 889999899988888876552 3333333321 1235555565555553 445567778
Q ss_pred HHHHHHHhcccCCCChhhH-HHHHHHHHHHhhhc--CChhHHHHHHHHHHhhccch-hhHHHHhhcchhhHHHhhc----
Q psy4828 155 KIIAKIACWSVDLLNPSDL-NFYLTWLKDQLKLA--NNDYMQSVARCLQMMLRIDE-YRIAFINVDGIRTLLSVLS---- 226 (448)
Q Consensus 155 ~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L~~~--~~~~~~~~~~~l~~lL~~~~-~R~~f~~~~gv~~L~~lL~---- 226 (448)
.++.+++...+. +..+.. ..++.||-..+... -+...+-+...+.-++.... .|...-..+|+-.++.-|+
T Consensus 204 ~vveNlv~~r~~-~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 204 AVVENLVEVRPA-ICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHhccHH-HHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 888888765542 223322 36999987766432 12223346666776776665 8888888899988876662
Q ss_pred -cCcc---hHHHH--HHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhh-----h---hcccCCCchhHHHHHHHH
Q psy4828 227 -GRVN---FQIQY--QLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKE-----K---NLIEKPTEPALAKENCIA 292 (448)
Q Consensus 227 -~~~~---~Ql~Y--~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KE-----K---NLl~~~~~~~~~~~~~~~ 292 (448)
+... =++.= .=|+|.-++ .++..+.|.+..-+....-++|...+= | -++.+++. ..+|..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm--~~~nr~~Fl~~EGlqLm~Lmlr~Kk~sr~SalkvLd~am~g~~g----t~~C~k 356 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLM--APANRERFLKGEGLQLMNLMLREKKVSRGSALKVLDHAMFGPEG----TPNCNK 356 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhc--ChhhhhhhhccccHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCc----hHHHHH
Confidence 2111 12222 223444343 445556664433344444444331000 0 23333332 236777
Q ss_pred HHhcchHHHHHHHh--------cCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhch
Q psy4828 293 MVQSKVLKQLSILE--------QRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENA 364 (448)
Q Consensus 293 mv~~~~l~~l~~L~--------~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~ 364 (448)
.|+..+++++==+= .|+-+-.|..+ .....++|.=.|+.+ +|+ +.| .
T Consensus 357 fVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eE----------hv~siiaSl~~~~~~----------~~r-~R~----l 411 (536)
T KOG2734|consen 357 FVEILGLRTIFPLFMKTPLKRKKRKISADEHEE----------HVCSILASLLRNLDG----------VHR-QRL----L 411 (536)
T ss_pred HHHHHhHHHHHHHHhhCccchhcccCcHHHHHH----------HHHHHHHHHHHhccc----------cHH-HHH----H
Confidence 77776666553222 12222222221 222223444445433 343 222 5
Q ss_pred hhhhhhhHHHHHHHHHhh
Q psy4828 365 PRLHEKNYELLKSLIHLL 382 (448)
Q Consensus 365 ~kf~e~~~~llk~L~~lL 382 (448)
.||.+|+|+=+.+|.++-
T Consensus 412 ~KF~End~EKvdRl~el~ 429 (536)
T KOG2734|consen 412 RKFVENDFEKVDRLMELY 429 (536)
T ss_pred HHHhccccHHHHHHHHHH
Confidence 689999999999888774
No 53
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.34 E-value=2.3 Score=37.37 Aligned_cols=112 Identities=13% Similarity=0.232 Sum_probs=74.6
Q ss_pred cHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHH
Q psy4828 30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLI 109 (448)
Q Consensus 30 ~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li 109 (448)
|.|++-..++++....|--..++. .+= .++-.. ++++.-..++.++++|.+..++.++.-++.=|
T Consensus 4 tsfdeY~~El~sg~L~WSP~H~se-------~FW-------~ENa~k-f~~~~~~llk~L~~lL~~s~d~~~laVac~Di 68 (119)
T PF11698_consen 4 TSFDEYLSELESGHLEWSPVHKSE-------KFW-------RENADK-FEENNFELLKKLIKLLDKSDDPTTLAVACHDI 68 (119)
T ss_dssp -HHHHHHHHHHHT-----GGGG-H-------HHH-------HHHSGG-GSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhcCCccccCCCCCc-------cHH-------HHHHHH-HHHcccHHHHHHHHHHccCCCcceeehhhcch
Confidence 456777788888888887666540 011 111112 33443467888999997767788888888889
Q ss_pred HHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 110 DDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 110 ~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
..+++..|..-.++.++ ..-...+.+++++|+-|+..|+..+.+++.
T Consensus 69 g~~vr~~p~gr~ii~~l------g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 69 GEFVRHYPNGRNIIEKL------GAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHH-GGGHHHHHHH------SHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHChhHHHHHHhc------ChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999877766665 344557999999999999999999999875
No 54
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.92 E-value=0.88 Score=31.65 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=33.1
Q ss_pred cchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhh
Q psy4828 205 IDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLT 245 (448)
Q Consensus 205 ~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLS 245 (448)
.+++|+.+.+.+|++.|+++|. ..+..++.+++-++|=||
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 3688999999999999999997 446677779988888764
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.49 E-value=12 Score=35.36 Aligned_cols=144 Identities=17% Similarity=0.217 Sum_probs=79.6
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccC
Q psy4828 87 KTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVD 166 (448)
Q Consensus 87 ~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~ 166 (448)
..+...+++ .+.-+++..+.++.++....+...+-+.+ .-.+++++.+.+.-.+|...|...|..++..-+
T Consensus 56 ~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-------~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~- 126 (228)
T PF12348_consen 56 DAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPYAD-------ILLPPLLKKLGDSKKFIREAANNALDAIIESCS- 126 (228)
T ss_dssp HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHHHH-------HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHHHH-------HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-
Confidence 344444444 45678899999999998777666554444 346678999999999999999999999986442
Q ss_pred CCChhhHHHH-HHHHHHHhhhcCChhHHHHHHHHHHhhccchh-hHHHHhhcchhhHHHhhc---cCcchHHHHHHHHHH
Q psy4828 167 LLNPSDLNFY-LTWLKDQLKLANNDYMQSVARCLQMMLRIDEY-RIAFINVDGIRTLLSVLS---GRVNFQIQYQLIFCL 241 (448)
Q Consensus 167 ~~~~~~l~~~-l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~-R~~f~~~~gv~~L~~lL~---~~~~~Ql~Y~~ll~l 241 (448)
.. ..+ +..+.....+.++.....++.++..++..-.- ...+....+++.+.+.+. +..+..+-.++--|+
T Consensus 127 -~~----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~ 201 (228)
T PF12348_consen 127 -YS----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECL 201 (228)
T ss_dssp -H------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred -cH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 01 222 44455444444444545677788877666441 111112222333443331 334566666888888
Q ss_pred HHh
Q psy4828 242 WVL 244 (448)
Q Consensus 242 WlL 244 (448)
|.+
T Consensus 202 ~~l 204 (228)
T PF12348_consen 202 WAL 204 (228)
T ss_dssp HHH
T ss_pred HHH
Confidence 877
No 56
>KOG3036|consensus
Probab=86.67 E-value=14 Score=36.75 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred HHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHH-HHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHH
Q psy4828 61 DFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTI-QYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFL 139 (448)
Q Consensus 61 ~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~v-qyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl 139 (448)
.+++-+.+. ++.|..++...-+.|.-+|++-.++....+.+ -..|-.|+-|+..+..-+--|.- .....+..+
T Consensus 101 ~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-----~TeIVPlCL 174 (293)
T KOG3036|consen 101 ALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-----TTEIVPLCL 174 (293)
T ss_pred HHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-----HhhhHHHHH
Confidence 355555554 45778899888899999999988886666666 46778999999766533433444 236677779
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhcccCCC-ChhhHHHHHH---HHHH---Hhh-hcCChhHHHHHHHHHHhhccchhhHH
Q psy4828 140 NLLNGSDGFIINMTAKIIAKIACWSVDLL-NPSDLNFYLT---WLKD---QLK-LANNDYMQSVARCLQMMLRIDEYRIA 211 (448)
Q Consensus 140 ~lL~~~d~~I~~~a~~iLt~l~~~~~~~~-~~~~l~~~l~---~l~~---~L~-~~~~~~~~~~~~~l~~lL~~~~~R~~ 211 (448)
+.......-.+..|.+|+.+++.++..-. -=+-.++|.. .|.+ ++. .++......++||+.+|-.++..|..
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~a 254 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAA 254 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999999999999996542110 0001133321 1122 222 23444556789999999999999987
Q ss_pred HH
Q psy4828 212 FI 213 (448)
Q Consensus 212 f~ 213 (448)
.-
T Consensus 255 L~ 256 (293)
T KOG3036|consen 255 LR 256 (293)
T ss_pred HH
Confidence 64
No 57
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=86.63 E-value=1.9 Score=35.73 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=43.4
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCChHHHH--HHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~--~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
=|+.+...|.||+++.+.|+.-......++. .++...|+.....|.+.|...+-++.
T Consensus 19 ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~L 77 (86)
T cd08323 19 IMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDL 77 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHH
Confidence 4899999999999999999994433222333 57888888889999999987544444
No 58
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.09 E-value=76 Score=37.07 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
-+.+..|+.+| +..|+.|-.-|..-||.+ ...| .++..+..+++++|++||.+|..|++
T Consensus 837 ~~a~~~L~~~L-~D~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 837 DVAVPALVEAL-TDPHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred cchHHHHHHHh-cCCCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 36678999999 567888888888888885 1111 24667779999999999999999986
No 59
>KOG1240|consensus
Probab=85.65 E-value=58 Score=39.04 Aligned_cols=287 Identities=18% Similarity=0.242 Sum_probs=151.7
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHHHHhh--chhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcc
Q psy4828 87 KTFLNLLEHISKDSTIQYILVLIDDILQE--DRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWS 164 (448)
Q Consensus 87 ~~~l~lL~~~~~~d~vqyvL~li~dll~~--~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~ 164 (448)
..+.+.+.++.-.++....|.|+..+-+. +..+.+ .-.|| |+.++..+++-++-.|...|+.++.-=
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LD---------RVlPY--~v~l~~Ds~a~Vra~Al~Tlt~~L~~V 493 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLD---------RVLPY--FVHLLMDSEADVRATALETLTELLALV 493 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHh---------hhHHH--HHHHhcCchHHHHHHHHHHHHHHHhhc
Confidence 33334455555566666677666655322 222222 22454 788888889999999999999998643
Q ss_pred cCCCChhhH----HHHHHHHHHHhhhcCChhHHHH-HHHHHHhhccchhhHHHHhhcchhhHHHhhc--cCcchHHHHHH
Q psy4828 165 VDLLNPSDL----NFYLTWLKDQLKLANNDYMQSV-ARCLQMMLRIDEYRIAFINVDGIRTLLSVLS--GRVNFQIQYQL 237 (448)
Q Consensus 165 ~~~~~~~~l----~~~l~~l~~~L~~~~~~~~~~~-~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~--~~~~~Ql~Y~~ 237 (448)
.+ .+..+. +++|--|...+..++++++..+ +.||..|+.. .||-.-... ......++. ++.+.+-
T Consensus 494 r~-~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t-A~rFle~~q--~~~~~g~~n~~nset~~~---- 565 (1431)
T KOG1240|consen 494 RD-IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT-AYRFLELTQ--ELRQAGMLNDPNSETAPE---- 565 (1431)
T ss_pred cC-CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH-HHHHHHHHH--HHHhcccccCcccccccc----
Confidence 32 222222 4555555555544456666654 7888866554 455432211 111112221 1100000
Q ss_pred HHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHH
Q psy4828 238 IFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE 317 (448)
Q Consensus 238 ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e 317 (448)
..|+.+ ...|++.+...+-+ |+..++ +.+++ ++++. +.+++--.-.+|=.|-=|.-
T Consensus 566 ------~~~~~~----------~~~L~~~V~~~v~s--Llsd~~-~~Vkr----~Lle~-i~~LC~FFGk~ksND~iLsh 621 (1431)
T KOG1240|consen 566 ------QNYNTE----------LQALHHTVEQMVSS--LLSDSP-PIVKR----ALLES-IIPLCVFFGKEKSNDVILSH 621 (1431)
T ss_pred ------cccchH----------HHHHHHHHHHHHHH--HHcCCc-hHHHH----HHHHH-HHHHHHHhhhcccccchHHH
Confidence 011111 22333333333333 666554 22221 34444 66677666677766766777
Q ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhh
Q psy4828 318 DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYD 397 (448)
Q Consensus 318 dl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~D 397 (448)
-+.||.+. +..++- +=||.... -++-+-|--+- --++.-|.+-| +-..+-|++-|+..
T Consensus 622 LiTfLNDk-Dw~LR~-aFfdsI~g--vsi~VG~rs~s-----------------eyllPLl~Q~l-tD~EE~Viv~aL~~ 679 (1431)
T KOG1240|consen 622 LITFLNDK-DWRLRG-AFFDSIVG--VSIFVGWRSVS-----------------EYLLPLLQQGL-TDGEEAVIVSALGS 679 (1431)
T ss_pred HHHHhcCc-cHHHHH-HHHhhccc--eEEEEeeeeHH-----------------HHHHHHHHHhc-cCcchhhHHHHHHH
Confidence 77777665 333322 12222110 01112221111 24555555666 34556788888888
Q ss_pred HhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHH
Q psy4828 398 IGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAV 440 (448)
Q Consensus 398 Ige~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~av 440 (448)
+.-+++..---|..+-+ .-+.|.-|+-|||.=||+.|+--+
T Consensus 680 ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 680 LSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGII 720 (1431)
T ss_pred HHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHH
Confidence 88888875544444433 235788899999999999997543
No 60
>KOG1059|consensus
Probab=84.83 E-value=77 Score=36.06 Aligned_cols=221 Identities=14% Similarity=0.201 Sum_probs=132.4
Q ss_pred CchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHH
Q psy4828 132 EPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIA 211 (448)
Q Consensus 132 ~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~ 211 (448)
.+-+.-.+.+|++.-+||+-+|.-++=++.-..| +.+..-|.-|.+.|..+++..+..++..+++|+|...--
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn-- 215 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN-- 215 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--
Confidence 3556678899999999999999999888875543 567788888898888777777777889999988764311
Q ss_pred HHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHH
Q psy4828 212 FINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCI 291 (448)
Q Consensus 212 f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~ 291 (448)
|. ...+.++.+|++..+-=++-.++=.+--||- +-+.+. ..+||.|+++...++-- .+--+++.
T Consensus 216 yL--~LAP~ffkllttSsNNWmLIKiiKLF~aLtp---lEPRLg-KKLieplt~li~sT~Am----------SLlYECvN 279 (877)
T KOG1059|consen 216 YL--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTP---LEPRLG-KKLIEPITELMESTVAM----------SLLYECVN 279 (877)
T ss_pred cc--cccHHHHHHHhccCCCeehHHHHHHHhhccc---cCchhh-hhhhhHHHHHHHhhHHH----------HHHHHHHH
Confidence 00 1234556777533321111122222222222 111222 24677777776554321 11111222
Q ss_pred HHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhh
Q psy4828 292 AMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKN 371 (448)
Q Consensus 292 ~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~ 371 (448)
.+|.. +++... |=|. .--
T Consensus 280 TVVa~-------s~s~g~------------------------------------------~d~~-------------asi 297 (877)
T KOG1059|consen 280 TVVAV-------SMSSGM------------------------------------------SDHS-------------ASI 297 (877)
T ss_pred Hheee-------hhccCC------------------------------------------CCcH-------------HHH
Confidence 22222 111111 1110 000
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
.--+.+|-.++ .++|+..-=++|..++-..+-||-..+- -|+.|.+.|...|+.||-.||--+=.|
T Consensus 298 qLCvqKLr~fi-edsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gm 363 (877)
T KOG1059|consen 298 QLCVQKLRIFI-EDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGM 363 (877)
T ss_pred HHHHHHHhhhh-hcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 11233444555 4788888888999999999988865442 378999999999999999998654443
No 61
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=84.78 E-value=1.1 Score=40.62 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=32.6
Q ss_pred cchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 406 PRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 406 p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
++.|.+-..-...+.++.|+.|+|++|+..||.|+-
T Consensus 7 ~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll 42 (141)
T PF07539_consen 7 KNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLL 42 (141)
T ss_pred CCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778888887778899999999999999999999985
No 62
>PRK09687 putative lyase; Provisional
Probab=83.72 E-value=50 Score=33.03 Aligned_cols=167 Identities=13% Similarity=0.095 Sum_probs=83.8
Q ss_pred HhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhc-h-hHHH---HHHHhhhcCC-
Q psy4828 58 EDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQED-R-SRVE---IFKEYSQTKR- 131 (448)
Q Consensus 58 ~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~-~-~~~~---~f~~~~~~~~- 131 (448)
.+..+...|++.+.+.-...+...........+..|...+.+++...+..+ +.+. + .|.. .+..++....
T Consensus 12 ~~~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~l----l~~~d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 12 KEYSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIEL----CSSKNPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred HHHHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHH----HhCCCHHHHHHHHHHHHhcCCCccc
Confidence 345566677777666555566554444455556667777776665555443 3332 2 2322 2233321110
Q ss_pred -CchhHHHHhh-hcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhh
Q psy4828 132 -EPVCSQFLNL-LNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR 209 (448)
Q Consensus 132 -~~~~~~fl~l-L~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R 209 (448)
...++.+..+ ++.+|+.|+-.|...|..+-..+.. ....++.-+...+..++......++.+|..+
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~------- 155 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSVI------- 155 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-------
Confidence 1234455555 5667889999999999887432221 1123333343333332222223345555421
Q ss_pred HHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHh
Q psy4828 210 IAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVL 244 (448)
Q Consensus 210 ~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlL 244 (448)
-....++.|..+|.+. +..+.+.+++++=-+
T Consensus 156 ---~~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 156 ---NDEAAIPLLINLLKDP-NGDVRNWAAFALNSN 186 (280)
T ss_pred ---CCHHHHHHHHHHhcCC-CHHHHHHHHHHHhcC
Confidence 1122455566666532 235666666655544
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=83.53 E-value=3.8 Score=32.44 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCC-ChhHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHE-DPNVRYEALLAV 440 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~-d~eVr~eAL~av 440 (448)
.+++..|+++| ++.|+.|-.-|+.-+|.+= .-.+-..+.++|.++ +..||..|..|+
T Consensus 30 ~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~-----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 30 PEAIPALIELL-KDEDPMVRRAAARALGRIG-----------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHHH-TSSSHHHHHHHHHHHHCCH-----------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 58899999999 6899999999999999872 123567788888765 566799999886
No 64
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=83.45 E-value=2.4 Score=34.65 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=45.5
Q ss_pred HHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChH-HHH--HHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 38 EVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSA-KRA--EMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 38 ~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~-~r~--~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
.|+.-.+=||.+...|+||+++++.|++-. .+.+ .|. .++...|+.+...|.+.|.. .++..
T Consensus 13 ~v~~v~~ilD~L~~~~Vit~e~~~~I~a~~-T~~~kar~Lld~l~~kG~~A~~~F~~~L~e-~~p~L 77 (82)
T cd08330 13 RVTNVDPILDKLHGKKVITQEQYSEVRAEK-TNQEKMRKLFSFVRSWGASCKDIFYQILRE-EEPYL 77 (82)
T ss_pred HHhhHHHHHHHHHHCCCCCHHHHHHHHcCC-CcHHHHHHHHHHHHccCHHHHHHHHHHHHH-hChHH
Confidence 343334459999999999999999999944 4433 444 57778888899999999965 44444
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=83.13 E-value=94 Score=35.70 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhcccC--hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHH
Q psy4828 82 RGHAAKTFLNLLEHIS--KDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAK 159 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~--~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~ 159 (448)
|......|..+++.++ +....|-+.-.+.......|+.+-+ ....|.+=|.+++++|+-+|++.++.
T Consensus 63 G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----------aINtl~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 63 GRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----------AVNTFLQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred CCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----------HHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 4445566665555443 3334454444444454445554322 23447788888999999999999997
Q ss_pred HHhcccCCCChhhHHHHHHHHHHHhhhcCChhHH-HHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHH
Q psy4828 160 IACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQ-SVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLI 238 (448)
Q Consensus 160 l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~-~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~l 238 (448)
+- ..+-++.++.-+...+.. .+.|+. .++-|+..+.+... ..+-..+.+..|..+|.+ .+...+++++
T Consensus 132 Ir-------~~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D-~dp~Vv~nAl 200 (746)
T PTZ00429 132 IR-------VSSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLND-NNPVVASNAA 200 (746)
T ss_pred CC-------cHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcC-CCccHHHHHH
Confidence 64 244567777777777765 456665 56788887766543 222333344566676653 4555666777
Q ss_pred HHHHHh
Q psy4828 239 FCLWVL 244 (448)
Q Consensus 239 l~lWlL 244 (448)
.++--+
T Consensus 201 ~aL~eI 206 (746)
T PTZ00429 201 AIVCEV 206 (746)
T ss_pred HHHHHH
Confidence 666555
No 66
>KOG4646|consensus
Probab=83.09 E-value=14 Score=33.77 Aligned_cols=102 Identities=20% Similarity=0.178 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcCh-hH
Q psy4828 172 DLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNP-KL 250 (448)
Q Consensus 172 ~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~-~~ 250 (448)
.++-|++.|.++ +.-.+..++..|.++.-.+...+.+.+..|++.++..+++.+..-+.|.++ .+-.|+|-. .-
T Consensus 59 vLdlFvdsl~e~----ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~-~l~~l~~~~Rt~ 133 (173)
T KOG4646|consen 59 VLDLFVDSLEEQ----NELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAAL-FLQLLEFGERTE 133 (173)
T ss_pred HHHHHHHHhhcc----cHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHH-HHHHhcCcccch
Confidence 445555555532 223445688889999999999999999999999999898877776666554 456677765 34
Q ss_pred HHhhhcCCCHHHHHHHh-hhhhhhhhccc
Q psy4828 251 ADRMNKFNVIPTLADIL-SDSVKEKNLIE 278 (448)
Q Consensus 251 ~~~l~~~~iI~~L~~il-k~~~KEKNLl~ 278 (448)
.+++....++..+-+.- ..+..|.||.+
T Consensus 134 r~ell~p~Vv~~v~r~~~s~s~~~rnLa~ 162 (173)
T KOG4646|consen 134 RDELLSPAVVRTVQRWRESKSHDERNLAS 162 (173)
T ss_pred hHHhccHHHHHHHHHHHHHhhHHHHHHHH
Confidence 55554433333333332 33445545543
No 67
>KOG1048|consensus
Probab=82.87 E-value=8.2 Score=43.50 Aligned_cols=134 Identities=18% Similarity=0.098 Sum_probs=90.9
Q ss_pred chhHHHHhhhcC-CchhHHHHHHHHHHHHHhcccCCCChhhH-------HHHHHHHHHHhhhcCChhHHHHHHHHHHhhc
Q psy4828 133 PVCSQFLNLLNG-SDGFIINMTAKIIAKIACWSVDLLNPSDL-------NFYLTWLKDQLKLANNDYMQSVARCLQMMLR 204 (448)
Q Consensus 133 ~~~~~fl~lL~~-~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-------~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~ 204 (448)
....|++.+|.- ....+.+.++-.|-.|...+.. + ...+ ++-+..|.+.|++.++..+..++.+|-+|.+
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~-~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~ 595 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-W-SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR 595 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-c-hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc
Confidence 345666777763 3678889999999988765532 1 1111 3345667777777777888888999999999
Q ss_pred cchhhHHHHhhcchhhHHHhhccCcc-----hHHHHHHHHHHHHhh-cChhHHHhhhcCCCHHHHHHHhhh
Q psy4828 205 IDEYRIAFINVDGIRTLLSVLSGRVN-----FQIQYQLIFCLWVLT-FNPKLADRMNKFNVIPTLADILSD 269 (448)
Q Consensus 205 ~~~~R~~f~~~~gv~~L~~lL~~~~~-----~Ql~Y~~ll~lWlLS-F~~~~~~~l~~~~iI~~L~~ilk~ 269 (448)
....|...- ..+++-|+..|.+..+ -|+.=.+|..+|=+. =+...+..+...+-|+.|+-|.+.
T Consensus 596 d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s 665 (717)
T KOG1048|consen 596 DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS 665 (717)
T ss_pred Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc
Confidence 999998865 6678999999965444 666666666677665 444555555544456666655544
No 68
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=82.83 E-value=39 Score=34.01 Aligned_cols=127 Identities=20% Similarity=0.244 Sum_probs=71.6
Q ss_pred chhHHHHHHHHHHHHHhcccCCCC-------hhhHHHHHHHHHHHhhhcCChhHH-HHHHHHHHhhccchhhHHHHhhcc
Q psy4828 146 DGFIINMTAKIIAKIACWSVDLLN-------PSDLNFYLTWLKDQLKLANNDYMQ-SVARCLQMMLRIDEYRIAFINVDG 217 (448)
Q Consensus 146 d~~I~~~a~~iLt~l~~~~~~~~~-------~~~l~~~l~~l~~~L~~~~~~~~~-~~~~~l~~lL~~~~~R~~f~~~~g 217 (448)
+.-+..-.+.++.-++..++.+.+ .+.-..|-.++. .+.++ +.+++ .+..++..++.....+..-...+.
T Consensus 70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~~~-D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~ 147 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLDRN-DSFIQLKAAFILTSLLSQGPKRSEKLVKEA 147 (312)
T ss_dssp -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S-S-SHHHHHHHHHHHHHHHTSTTT--HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-HhcCC-CHHHHHHHHHHHHHHHHcCCccccchHHHH
Confidence 333444455556666665543210 000012333343 44443 55544 467899999888888776544455
Q ss_pred hhhHHHhhcc---CcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhh
Q psy4828 218 IRTLLSVLSG---RVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEK 274 (448)
Q Consensus 218 v~~L~~lL~~---~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEK 274 (448)
++.+++.|++ ....+.+|-++-|+=.|.-.++....+.+.+.++.+.++++.....+
T Consensus 148 l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~ 207 (312)
T PF03224_consen 148 LPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNS 207 (312)
T ss_dssp HHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccC
Confidence 6777777753 33567778999999999999999999977788999999996444433
No 69
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=80.62 E-value=6.3 Score=32.40 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcC----CchhHHHHHHHHHHH
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNG----SDGFIINMTAKIIAK 159 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~----~d~~I~~~a~~iLt~ 159 (448)
.+.++|..++++.++.|+..-+|..|..|++...+... ..|++.+..|.. ++.-+...|+.++..
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~-----------SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIK-----------SGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHH-----------hccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 46899999999988999999999999999976554433 569998888864 366677778777653
No 70
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=80.58 E-value=4.1 Score=27.40 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=32.2
Q ss_pred chhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhc
Q psy4828 206 DEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF 246 (448)
Q Consensus 206 ~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF 246 (448)
++.+..+.+.+|++.|+++|.. ....++.+++.++.-|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~-~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS-EDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHcC
Confidence 3577888899999999999873 367778899988887764
No 71
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=80.11 E-value=19 Score=37.24 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=86.8
Q ss_pred HHHHHHHhcCCCCchhHHhhC----CCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHH
Q psy4828 33 QQQATEVRNQRPNWNTYQQSQ----MISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVL 108 (448)
Q Consensus 33 ~~~~~~ir~r~i~W~~~~ra~----~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~l 108 (448)
+..+..|...+.=|.-+.-.+ .|+.+-.+-++.+=...+.--.+++..+-+.....+-.||.+ ++--|.+.+|.|
T Consensus 154 e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s-~NYvtkrqslkL 232 (335)
T PF08569_consen 154 ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES-SNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT--SSHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC-CCeEeehhhHHH
Confidence 444556666666666544322 134455556666555555556678888877888877888877 788899999999
Q ss_pred HHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 109 IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 109 i~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
++++|.+-+ -.++..++-. .+.-....+.+|.++..-|+.-|+++.-.+++...
T Consensus 233 L~ellldr~-n~~vm~~yi~--~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 233 LGELLLDRS-NFNVMTRYIS--SPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHSGG-GHHHHHHHTT---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHchh-HHHHHHHHHC--CHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 999997744 3333444321 23446678999999999999999999998887654
No 72
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=77.63 E-value=53 Score=30.29 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=54.5
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
+.|...+...|+. +++.+.+.++..+..|+..+.-+.+ +.-+..++.+|.-+|+-|+..|...+..+..
T Consensus 24 e~~~~~l~~~L~D-~~~~VR~~al~~Ls~Li~~d~ik~k----------~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 24 EPYLPNLYKCLRD-EDPLVRKTALLVLSHLILEDMIKVK----------GQLFSRILKLLVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HhHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHcCceeeh----------hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4567777788877 6788889999999999988743332 1223568888888899999999999999986
Q ss_pred c
Q psy4828 163 W 163 (448)
Q Consensus 163 ~ 163 (448)
.
T Consensus 93 ~ 93 (178)
T PF12717_consen 93 K 93 (178)
T ss_pred h
Confidence 5
No 73
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=77.59 E-value=6.8 Score=32.87 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=41.0
Q ss_pred CCchhHHhhCCCCHHhHHHHHHhhcCChHHHH--HHHhhchhHHHHHHHHHhcc
Q psy4828 44 PNWNTYQQSQMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLNLLEH 95 (448)
Q Consensus 44 i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~--~~~~~~~~~~~~~~l~lL~~ 95 (448)
.=|+.+...|.||+++++.|+.-......+|. .++...|+..+..|++.|..
T Consensus 27 ~ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~A~~~F~~~L~e 80 (94)
T cd08329 27 PILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLVKGNAAAEVFRNCLKK 80 (94)
T ss_pred HHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34999999999999999999994443222443 57778888899999999965
No 74
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=76.92 E-value=37 Score=31.43 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 98 KDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 98 ~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
+..++|-.|..+..++...|..+....+ +-|++.++.+|...++-|+..|..++-.|+..++
T Consensus 73 d~~i~q~sLaILEs~Vl~S~~ly~~V~~------evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 73 DASILQRSLAILESIVLNSPKLYQLVEQ------EVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred cchHHHHHHHHHHHHHhCCHHHHHHHhc------cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 6778999999999999999988875544 4789999999999999999999999999987664
No 75
>KOG1058|consensus
Probab=76.49 E-value=1.5e+02 Score=34.13 Aligned_cols=114 Identities=12% Similarity=0.275 Sum_probs=80.3
Q ss_pred hHHHHHHhhcCChHHHHHHHh------hchhHHHHHHHHHhccc--ChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcC
Q psy4828 59 DYDFITVFDTASSAKRAEMLN------ERRGHAAKTFLNLLEHI--SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTK 130 (448)
Q Consensus 59 d~~~ik~~d~~~~~~r~~~~~------~~~~~~~~~~l~lL~~~--~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~ 130 (448)
+-++-+++++.+.+.|.+.++ -+|+.+-.++.++.+-+ +++.++|=+|-..=+++..-.+--+++++.
T Consensus 22 ~~~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EM---- 97 (948)
T KOG1058|consen 22 EDEIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEM---- 97 (948)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHH----
Confidence 345667788877776665332 36667777777777765 668888888888888885554444556653
Q ss_pred CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHh
Q psy4828 131 REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL 184 (448)
Q Consensus 131 ~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L 184 (448)
-.....|-+=|+|+..||+=.+++.|.+|= +.+-++.++-.+..-|
T Consensus 98 -ILvcna~RkDLQHPNEyiRG~TLRFLckLk-------E~ELlepl~p~Iracl 143 (948)
T KOG1058|consen 98 -ILVCNAYRKDLQHPNEYIRGSTLRFLCKLK-------EPELLEPLMPSIRACL 143 (948)
T ss_pred -HHHHHHHhhhccCchHhhcchhhhhhhhcC-------cHHHhhhhHHHHHHHH
Confidence 145566778899999999999999999873 4555677776666555
No 76
>KOG1517|consensus
Probab=75.76 E-value=13 Score=43.64 Aligned_cols=154 Identities=14% Similarity=0.177 Sum_probs=112.1
Q ss_pred hcCCCHHHHHHHhhhhhhhh---------hcccCCCchhHHHHHHHHHHh-cchHHHHHHHhcCCCCChHHHHHHHHHHH
Q psy4828 255 NKFNVIPTLADILSDSVKEK---------NLIEKPTEPALAKENCIAMVQ-SKVLKQLSILEQRKFDDEDIVEDVQFLNE 324 (448)
Q Consensus 255 ~~~~iI~~L~~ilk~~~KEK---------NLl~~~~~~~~~~~~~~~mv~-~~~l~~l~~L~~rk~~Dedl~edl~~L~e 324 (448)
-.-||.|++..+|++..+|= -++...++.++ .+|+ +|-.-.++.|.....-++|-.....|+..
T Consensus 509 LsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~------dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLA 582 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA------DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLA 582 (1387)
T ss_pred hccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH------HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHH
Confidence 34599999999999999997 45555444221 3333 45455666666644445677777777765
Q ss_pred HHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhh
Q psy4828 325 KLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRH 404 (448)
Q Consensus 325 ~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~ 404 (448)
.+-.+++. =-.+.. +..++-.-.+.|+...+|.-..=+|=.||.+=..
T Consensus 583 viv~nf~l------GQ~acl--------------------------~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 583 VIVRNFKL------GQKACL--------------------------NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HHHcccch------hHHHhc--------------------------cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 54433221 111111 2567777777775434788888899999999999
Q ss_pred CcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 405 CPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 405 ~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
|++.|-.-.+.+|.+++..+++.+=||||--|.-|+.-++.+
T Consensus 631 ~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 631 YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988764
No 77
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=75.68 E-value=60 Score=29.74 Aligned_cols=133 Identities=19% Similarity=0.195 Sum_probs=78.0
Q ss_pred HHHHHhcCCCCChHH-HHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhc-hhhhhhhhHHHHHHH
Q psy4828 301 QLSILEQRKFDDEDI-VEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWREN-APRLHEKNYELLKSL 378 (448)
Q Consensus 301 ~l~~L~~rk~~Dedl-~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN-~~kf~e~~~~llk~L 378 (448)
++..|.+.+.-.+.. ..++..+...+..-++.=+...++.+=..- ...=.+| -..|.++-..-++.|
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll-----------~~~~~~~~~e~l~~~~~~W~~~L 72 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLLQSKSAYSRWAGLCLL-----------KVTVEQCSWEILLSHGSQWLRAL 72 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHhCCCChhhHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHHH
Confidence 444455444444443 555666666655555543444444332222 1111222 345656667778999
Q ss_pred HHhhccCCChhHHHHHH---hhHhhHhhhCcc-hhHHHHHhCcHH---HHHhhhcCCChhHHHHHHHHHHHHhccC
Q psy4828 379 IHLLETSRDPLVLSVAS---YDIGEYVRHCPR-GKHVIEQLGGKQ---LVMQLLSHEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 379 ~~lL~~S~D~~vlaVAc---~DIge~vr~~p~-gr~il~~lg~K~---~vM~Lm~h~d~eVr~eAL~avQklm~~~ 447 (448)
..+|++++++.++..|| .+|-.+++.+|+ .|.+..- .... .+++|++. +.+.-.||.+++.+|.++
T Consensus 73 l~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp-~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 73 LSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATP-NLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhc-cHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 99997766666555554 566677788887 5555442 2333 44454444 788889999999998753
No 78
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=74.83 E-value=5.8 Score=37.59 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=46.8
Q ss_pred HH-HHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHh----CcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 373 EL-LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQL----GGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 373 ~l-lk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~l----g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
++ +..+...+ ++.+|.+-..++.=+..++..+|.....++.- ..-..|+.+++++|++||..|-.|+..++.
T Consensus 130 ~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 130 KILLEILSQGL-KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 44 44444445 67889999999999999999888222222221 134688999999999999999999887764
No 79
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=74.62 E-value=5 Score=33.12 Aligned_cols=66 Identities=18% Similarity=0.328 Sum_probs=50.8
Q ss_pred HHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHH--HHHhhchhHHHHHHHHHhcccCh
Q psy4828 33 QQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLNLLEHISK 98 (448)
Q Consensus 33 ~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~--~~~~~~~~~~~~~~l~lL~~~~~ 98 (448)
...-.+||.-.+==|.+..-|+||+||++.+++---.....|. +++...|+.+-..|+.+|..+.+
T Consensus 8 e~LV~rI~~v~plLD~Ll~n~~it~E~y~~V~a~~T~qdkmRkLld~v~akG~~~k~~F~~iL~e~~~ 75 (85)
T cd08324 8 ELLVTHIRNTQCLVDNLLKNDYFSTEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEYFLYLLQQLAD 75 (85)
T ss_pred HHHHHHHHhhHHHHHHHhccCCccHHHHHHHHhCCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 3445677777778899999999999999999986654443333 67888888888899998877543
No 80
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.29 E-value=26 Score=29.23 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHhhch-hHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 99 DSTIQYILVLIDDILQEDR-SRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 99 ~d~vqyvL~li~dll~~~~-~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
.-+.-.-|.++..++.... .... -+.....|+..|+.+|+||...|.+.|+.|+...+
T Consensus 17 ~PvRa~gL~~L~~Li~~~~~~~~~---------~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 17 PPVRAHGLVLLRKLIESKSEPVID---------IPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred cchHHHHHHHHHHHHHcCCcchhh---------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4577888888888887755 1111 12345668999999999999999999999986553
No 81
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=70.86 E-value=12 Score=30.51 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=41.9
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCChHHHH--HHHhhchhHHHHHHHHHhccc
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLNLLEHI 96 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~--~~~~~~~~~~~~~~l~lL~~~ 96 (448)
=|+.+...|++|+++.+.|+.........+. ..+...|+.....|+..|...
T Consensus 25 vld~L~~~~Vlt~~e~e~i~~~~t~~~~~~~Lld~l~~kG~~Af~~F~~~L~~~ 78 (88)
T smart00114 25 LLDYLVEKNVLTEKEIEAIKAATTKLRDKRELVDSLQKRGSQAFDTFLDSLQET 78 (88)
T ss_pred HHHHHHHcCCCCHHHHHHHHccCChHHHHHHHHHHHHhHhHHHHHHHHHHHHHc
Confidence 4899999999999999999997765444333 577788888889999888763
No 82
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=70.67 E-value=3.3 Score=35.72 Aligned_cols=49 Identities=22% Similarity=0.271 Sum_probs=35.9
Q ss_pred hHHHHHHhhHhhHhhhCcchhHHHHHh---Cc--HHHHHhhhcCCChhHHHHHH
Q psy4828 389 LVLSVASYDIGEYVRHCPRGKHVIEQL---GG--KQLVMQLLSHEDPNVRYEAL 437 (448)
Q Consensus 389 ~vlaVAc~DIge~vr~~p~gr~il~~l---g~--K~~vM~Lm~h~d~eVr~eAL 437 (448)
.--|+.-.|.+.+=|+|-.=..+..++ |+ ...++.|+.|||+.||..|-
T Consensus 15 q~~A~~~~d~~~~Nr~~~k~~~~~~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA 68 (106)
T PF09450_consen 15 QGEAIDRGDARTANRLYDKMIRIYDELKSRGGDQRDALLPLLKHPNMQVRLWAA 68 (106)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCChhHHHHHH
Confidence 455778888888888877655555544 53 46899999999999998874
No 83
>KOG1058|consensus
Probab=70.65 E-value=1.3e+02 Score=34.63 Aligned_cols=179 Identities=17% Similarity=0.210 Sum_probs=94.1
Q ss_pred HHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhccc----------------ChhhHHHHHHHHHHHHHhhch-hHHHH
Q psy4828 60 YDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHI----------------SKDSTIQYILVLIDDILQEDR-SRVEI 122 (448)
Q Consensus 60 ~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~----------------~~~d~vqyvL~li~dll~~~~-~~~~~ 122 (448)
+++|++.-...++.|. .|.+.++++|.+. +++..++-.-..+-|++...+ .++.+
T Consensus 227 VE~Irkv~~~~p~~~~--------~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvkl 298 (948)
T KOG1058|consen 227 VELIRKVCLANPAEKA--------RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKL 298 (948)
T ss_pred HHHHHHHHhcCHHHhh--------HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhh
Confidence 4566666554444332 4566666666654 245556655555555553332 22222
Q ss_pred HH-----HhhhcC---CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHH
Q psy4828 123 FK-----EYSQTK---REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQS 194 (448)
Q Consensus 123 f~-----~~~~~~---~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~ 194 (448)
+. +++..+ =++-.--+++.|.++|--+..+++.+.-.|.... .++..+++|+..+....+..
T Consensus 299 Ivldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-------Nvediv~~Lkke~~kT~~~e--- 368 (948)
T KOG1058|consen 299 IVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-------NVEDIVQFLKKEVMKTHNEE--- 368 (948)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-------cHHHHHHHHHHHHHhccccc---
Confidence 21 111000 0122334689999999999999998888877544 24666777776553221111
Q ss_pred HHHHHHHhhccchhhHHHHhh-------------cchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhc--CCC
Q psy4828 195 VARCLQMMLRIDEYRIAFINV-------------DGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNK--FNV 259 (448)
Q Consensus 195 ~~~~l~~lL~~~~~R~~f~~~-------------~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~--~~i 259 (448)
.-...+||+...+. ..++.+++-|++....-. .-.|.|-.++.+.|.+ ..+
T Consensus 369 -------~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aa-------s~vl~FvrE~iek~p~Lr~~i 434 (948)
T KOG1058|consen 369 -------SDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAA-------SDVLMFVREAIEKFPNLRASI 434 (948)
T ss_pred -------cccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHH-------HHHHHHHHHHHHhCchHHHHH
Confidence 11223444444331 234555565654333222 2367788888888753 355
Q ss_pred HHHHHHHhhhh
Q psy4828 260 IPTLADILSDS 270 (448)
Q Consensus 260 I~~L~~ilk~~ 270 (448)
|..|.+-+...
T Consensus 435 i~~l~~~~~~i 445 (948)
T KOG1058|consen 435 IEKLLETFPQI 445 (948)
T ss_pred HHHHHHhhhhh
Confidence 66666555443
No 84
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=70.19 E-value=93 Score=28.86 Aligned_cols=86 Identities=17% Similarity=0.290 Sum_probs=55.2
Q ss_pred cchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCC-ChhHHHHHHhhHhhHhhhCcchhHH
Q psy4828 333 LSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSR-DPLVLSVASYDIGEYVRHCPRGKHV 411 (448)
Q Consensus 333 lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~-D~~vlaVAc~DIge~vr~~p~gr~i 411 (448)
|++|=|-. +-|...|. ... -.-+++.+.+...+. |+.++..|..=+-..|-..|.+...
T Consensus 38 L~af~eLM---eHg~vsWd-~l~----------------~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~ 97 (160)
T PF11841_consen 38 LTAFVELM---EHGIVSWD-TLS----------------DSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQL 97 (160)
T ss_pred HHHHHHHH---hcCcCchh-hcc----------------HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHH
Confidence 45665522 24888884 332 356888888886554 7777776666666666666666666
Q ss_pred HHHhCcHHHHHhhhcCCChhHHHHHHH
Q psy4828 412 IEQLGGKQLVMQLLSHEDPNVRYEALL 438 (448)
Q Consensus 412 l~~lg~K~~vM~Lm~h~d~eVr~eAL~ 438 (448)
+.+-=--+++...|...|++++-+|+-
T Consensus 98 V~~evt~~~Li~hLq~~~~~iq~naia 124 (160)
T PF11841_consen 98 VEQEVTLESLIRHLQVSNQEIQTNAIA 124 (160)
T ss_pred HhccCCHHHHHHHHHcCCHHHHHHHHH
Confidence 665333456666666688888777764
No 85
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=69.87 E-value=29 Score=31.80 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=57.6
Q ss_pred HHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHH
Q psy4828 76 EMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAK 155 (448)
Q Consensus 76 ~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~ 155 (448)
+++.+.+..+++.++++|++....-+.+++...+.+++..-...-++-.+.....=+...++++++++. ......++.
T Consensus 59 e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~ 136 (165)
T PF08167_consen 59 EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALD 136 (165)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHH
Confidence 567677778999999999996667788888888888875433222222222111111234455666554 677888888
Q ss_pred HHHHHHhcccC
Q psy4828 156 IIAKIACWSVD 166 (448)
Q Consensus 156 iLt~l~~~~~~ 166 (448)
.|+.++...+.
T Consensus 137 ~L~~ll~~~pt 147 (165)
T PF08167_consen 137 ALATLLPHHPT 147 (165)
T ss_pred HHHHHHHHCCc
Confidence 88888876653
No 86
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=69.56 E-value=23 Score=32.37 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=54.7
Q ss_pred HHHHHHHHhhccc--hhhHHHHhhcchhhHHHhhc--------cCcchHHHHHHHHHHHHhhcChhHHHhh-hcCCCHHH
Q psy4828 194 SVARCLQMMLRID--EYRIAFINVDGIRTLLSVLS--------GRVNFQIQYQLIFCLWVLTFNPKLADRM-NKFNVIPT 262 (448)
Q Consensus 194 ~~~~~l~~lL~~~--~~R~~f~~~~gv~~L~~lL~--------~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l-~~~~iI~~ 262 (448)
..+..|...||.. .+-+.|.+.+|+..|+++|. +....+++|+++.|+=.+-=+..+.+.+ ...+.|..
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~ 162 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNL 162 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHH
Confidence 4667777778877 45678999999999988873 2245789999999999887666666665 44577888
Q ss_pred HHHHhh
Q psy4828 263 LADILS 268 (448)
Q Consensus 263 L~~ilk 268 (448)
++..+-
T Consensus 163 i~~~L~ 168 (187)
T PF06371_consen 163 IALSLD 168 (187)
T ss_dssp HHHT--
T ss_pred HHHHHC
Confidence 877653
No 87
>KOG4413|consensus
Probab=68.38 E-value=1.6e+02 Score=30.82 Aligned_cols=266 Identities=16% Similarity=0.243 Sum_probs=140.6
Q ss_pred HhhhcCCchhHHHHHHHHHHHHHhcccCCC--------ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhH
Q psy4828 139 LNLLNGSDGFIINMTAKIIAKIACWSVDLL--------NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRI 210 (448)
Q Consensus 139 l~lL~~~d~~I~~~a~~iLt~l~~~~~~~~--------~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~ 210 (448)
-+=|.++|..+..+|+.-+..++.+..... +.+-++.+++.+. ..+.+.-..++..+.++.+.+.--.
T Consensus 88 QrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg----geddeVAkAAiesikrialfpaale 163 (524)
T KOG4413|consen 88 QRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG----GEDDEVAKAAIESIKRIALFPAALE 163 (524)
T ss_pred HhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc----CCcHHHHHHHHHHHHHHHhcHHHHH
Confidence 344566899999999999888886543211 1111222223322 2223333446788898888888888
Q ss_pred HHHhhcchhhHH-HhhccCcchHHHHHHH-HHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhh-h-hcccCCCchhHH
Q psy4828 211 AFINVDGIRTLL-SVLSGRVNFQIQYQLI-FCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKE-K-NLIEKPTEPALA 286 (448)
Q Consensus 211 ~f~~~~gv~~L~-~lL~~~~~~Ql~Y~~l-l~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KE-K-NLl~~~~~~~~~ 286 (448)
.+++.+....+- ..|.-+++--.-|.++ +++=+.|-+++++..-.+.|++..|-.= .|- | -|+-
T Consensus 164 aiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE----lkGteDtLVi-------- 231 (524)
T KOG4413|consen 164 AIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE----LKGTEDTLVI-------- 231 (524)
T ss_pred HhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH----hcCCcceeeh--------
Confidence 887776544332 2232222222334443 4556677888888877777744443322 221 1 1111
Q ss_pred HHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhh
Q psy4828 287 KENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPR 366 (448)
Q Consensus 287 ~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~k 366 (448)
-+|.+|+-. +...=.+|.|-..+ --|+.+.+++.-. .---|+.++.=.-+|+ -|=+||+++
T Consensus 232 -anciElvte----LaeteHgreflaQe--glIdlicnIIsGa--dsdPfekfralmgfgk----------ffgkeaimd 292 (524)
T KOG4413|consen 232 -ANCIELVTE----LAETEHGREFLAQE--GLIDLICNIISGA--DSDPFEKFRALMGFGK----------FFGKEAIMD 292 (524)
T ss_pred -hhHHHHHHH----HHHHhhhhhhcchh--hHHHHHHHHhhCC--CCCcHHHHHHHHHHHH----------HhcchHHhh
Confidence 123333320 11111122222211 0112222221111 0012444444444432 244688887
Q ss_pred hhhhhHHHHHHHHHhhc------cCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCc---HHHHHhhh---cCCChhHHH
Q psy4828 367 LHEKNYELLKSLIHLLE------TSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG---KQLVMQLL---SHEDPNVRY 434 (448)
Q Consensus 367 f~e~~~~llk~L~~lL~------~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~---K~~vM~Lm---~h~d~eVr~ 434 (448)
.-+. .+.++|+-..+ .++||..+.+|.-.+|.+=.. -+|++++.+-|- ...+|.-- .|.-.+.+-
T Consensus 293 vsee--aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaai 369 (524)
T KOG4413|consen 293 VSEE--AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAI 369 (524)
T ss_pred cCHH--HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHH
Confidence 4322 34444444443 369999999999999998765 799999999885 22444443 355567777
Q ss_pred HHHHHHHH
Q psy4828 435 EALLAVQK 442 (448)
Q Consensus 435 eAL~avQk 442 (448)
+||-++..
T Consensus 370 haLaaIag 377 (524)
T KOG4413|consen 370 HALAAIAG 377 (524)
T ss_pred HHHHHhhc
Confidence 77776653
No 88
>KOG2274|consensus
Probab=67.93 E-value=94 Score=36.19 Aligned_cols=117 Identities=11% Similarity=0.203 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcccCh-hhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCc----hhHHHHHHHH
Q psy4828 82 RGHAAKTFLNLLEHISK-DSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSD----GFIINMTAKI 156 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~~-~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d----~~I~~~a~~i 156 (448)
+...+..++++..+-++ +.+.--+..++-++++... .+.-. ..--.+.|+..|+.++ ..-...|.-+
T Consensus 569 ~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g~m-------~e~~iPslisil~~~~~~~~~~l~~~aidv 640 (1005)
T KOG2274|consen 569 ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYGPM-------QERLIPSLISVLQLNADKAPAGLCAIAIDV 640 (1005)
T ss_pred hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhcch-------HHHHHHHHHHHHcCcccccCchhhHHHHHH
Confidence 34456666777666544 4333444444444443111 00000 1122345677777776 5567788999
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHH-HhhhcCChhHHHHHHHHHHhhccc
Q psy4828 157 IAKIACWSVDLLNPSDLNFYLTWLKD-QLKLANNDYMQSVARCLQMMLRID 206 (448)
Q Consensus 157 Lt~l~~~~~~~~~~~~l~~~l~~l~~-~L~~~~~~~~~~~~~~l~~lL~~~ 206 (448)
|+.++..++.+.++.-+.+.|.-+.+ .+++.++.-.|.+..||..+..+.
T Consensus 641 Lttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 641 LTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 99999999877777666666655543 456667778888999998766653
No 89
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=67.45 E-value=14 Score=30.17 Aligned_cols=51 Identities=14% Similarity=0.248 Sum_probs=40.5
Q ss_pred chhHHhhCCCCHHhHHHHHHhhcCChH-HHH--HHHhhchhHHHHHHHHHhccc
Q psy4828 46 WNTYQQSQMISKEDYDFITVFDTASSA-KRA--EMLNERRGHAAKTFLNLLEHI 96 (448)
Q Consensus 46 W~~~~ra~~is~~d~~~ik~~d~~~~~-~r~--~~~~~~~~~~~~~~l~lL~~~ 96 (448)
|+.+...+.+++++.+.|+.-.....+ +|. ..+...|+..++.|++-|...
T Consensus 22 lD~Ll~~~Vl~~~E~e~i~~~~~t~~dkar~Lid~v~~KG~~A~~iF~~~L~~~ 75 (83)
T cd08325 22 LDDLLEKNVLNEEEMEKIKEENNTIMDKARVLVDSVTEKGQEAGQIFIKHLLNR 75 (83)
T ss_pred HHHHHHcCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 788899999999999999997554433 444 577778888999999888774
No 90
>KOG1222|consensus
Probab=67.39 E-value=35 Score=37.06 Aligned_cols=280 Identities=17% Similarity=0.229 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhcccCCCChh-hHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccC
Q psy4828 150 INMTAKIIAKIACWSVDLLNPS-DLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGR 228 (448)
Q Consensus 150 ~~~a~~iLt~l~~~~~~~~~~~-~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~ 228 (448)
.-.|+++|..++.+-+ .+.. --..++..|...|..++.+..-.++..|..|-...+.+......+.+..|+.++...
T Consensus 280 Lrva~ylLlNlAed~~--~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDIS--VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHhhhhh--HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 3457788888875432 1110 114566667777765444554455677777777778887777777788888877521
Q ss_pred cchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhh---h---------------------------ccc
Q psy4828 229 VNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEK---N---------------------------LIE 278 (448)
Q Consensus 229 ~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEK---N---------------------------Ll~ 278 (448)
...+.-.++..+.-|||+......|...|++|.|+-++.+..+-- | +++
T Consensus 358 -h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~ 436 (791)
T KOG1222|consen 358 -HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS 436 (791)
T ss_pred -CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence 234445688888899999999999999999999999996654422 1 111
Q ss_pred CCCchhHHHH-------------HHHHHHhcchHHHHHHHhcC--CCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q psy4828 279 KPTEPALAKE-------------NCIAMVQSKVLKQLSILEQR--KFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEV 343 (448)
Q Consensus 279 ~~~~~~~~~~-------------~~~~mv~~~~l~~l~~L~~r--k~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El 343 (448)
... ..+... |+-.|.++++ |..|.+| |+.|+=+..-+..+... .-.+..-|=.|+..+
T Consensus 437 ~~~-~~vdl~lia~ciNl~lnkRNaQlvceGqg---L~~LM~ra~k~~D~lLmK~vRniSqH---eg~tqn~FidyvgdL 509 (791)
T KOG1222|consen 437 GTG-SEVDLALIALCINLCLNKRNAQLVCEGQG---LDLLMERAIKSRDLLLMKVVRNISQH---EGATQNMFIDYVGDL 509 (791)
T ss_pred cCC-ceecHHHHHHHHHHHhccccceEEecCcc---hHHHHHHHhcccchHHHHHHHHhhhc---cchHHHHHHHHHHHH
Confidence 110 000000 1111222222 3445555 45566554444433221 111223466677665
Q ss_pred hhCCcccCCCCCChhHHHhchhhhh-----h-------hhHHHHHHHHHhhccC--CChhHHHHHHhhHhhHhhhCcchh
Q psy4828 344 KSGRLEWSPVHRSAQFWRENAPRLH-----E-------KNYELLKSLIHLLETS--RDPLVLSVASYDIGEYVRHCPRGK 409 (448)
Q Consensus 344 ~SG~L~WSP~H~se~FW~EN~~kf~-----e-------~~~~llk~L~~lL~~S--~D~~vlaVAc~DIge~vr~~p~gr 409 (448)
.- .+.- -.||.|=-|-..-+- + .+++++.-+...|... .|..+|.|... +|-.+|. -..-
T Consensus 510 a~-i~~n---d~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~-~GT~a~d-~~cA 583 (791)
T KOG1222|consen 510 AG-IAKN---DNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIA-CGTMARD-LDCA 583 (791)
T ss_pred HH-Hhhc---CchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHH-hhhhhhh-hHHH
Confidence 43 1111 345667777655432 2 2355666666666443 45555544321 3444443 2222
Q ss_pred HHHHHhCcHHHHHhhhc--CCChhHHHHHHHHHHHHhc
Q psy4828 410 HVIEQLGGKQLVMQLLS--HEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 410 ~il~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~ 445 (448)
.++-.-|.-.-+.+|++ .+|.|.--+-+..-|.++-
T Consensus 584 ~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~ 621 (791)
T KOG1222|consen 584 RLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLK 621 (791)
T ss_pred HHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 33334455567788885 4677776666665555543
No 91
>KOG2759|consensus
Probab=66.70 E-value=31 Score=36.64 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHH
Q psy4828 31 VLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLID 110 (448)
Q Consensus 31 ~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~ 110 (448)
.|++-.+++|+-...|.-+.++.-.=-|-+ .-+.++.-+..+.++++|....++-++.-++-=|.
T Consensus 328 SFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa---------------~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIg 392 (442)
T KOG2759|consen 328 SFDEYKSELRSGRLEWSPVHKSEKFWRENA---------------DRLNENNYELLKILIKLLETSNDPIILCVACHDIG 392 (442)
T ss_pred cHHHHHHHHHhCCcCCCccccccchHHHhH---------------HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHH
Confidence 455667888999999988887643322222 22333334678999999999777888888898999
Q ss_pred HHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 111 DILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 111 dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
+.++..|+--..+.++ .+=...+++++++|+-|..-|+..+.+|+.
T Consensus 393 e~Vr~yP~gk~vv~k~------ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 393 EYVRHYPEGKAVVEKY------GGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHhCchHhHHHHHh------chHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999999887777777 344568999999999999999988888875
No 92
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=66.52 E-value=13 Score=29.40 Aligned_cols=56 Identities=18% Similarity=0.321 Sum_probs=40.1
Q ss_pred chhHHhhCCCCHHhHHHHHHhhcCChHHHH--HHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 46 WNTYQQSQMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 46 W~~~~ra~~is~~d~~~ik~~d~~~~~~r~--~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
++.+...|.||.+|++.|+.........+. .++...|+.....|+..|.....++.
T Consensus 19 l~~L~~~~vlt~~e~~~i~~~~~~~~k~~~Lld~l~~kg~~af~~F~~~L~~~~~~~L 76 (80)
T cd01671 19 LDHLLSDGVLTEEEYEKIRSESTRQDKARKLLDILPRKGPKAFQSFLQALQETDQPHL 76 (80)
T ss_pred HHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhcChHHHHHHHHHHHhcCChhH
Confidence 455667799999999999997652222322 57777888889999999987543444
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=66.47 E-value=32 Score=28.94 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhC-cHHHHHhhhcCCChhHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLG-GKQLVMQLLSHEDPNVRYEALLAV 440 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg-~K~~vM~Lm~h~d~eVr~eAL~av 440 (448)
-++++-+...+ +.+|+.|=--||.-++.+++..+ | .++..++ .-..+-+++..+|++||.-|-.--
T Consensus 26 ~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~-~-~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld 92 (97)
T PF12755_consen 26 DEILPPVLKCF-DDQDSRVRYYACEALYNISKVAR-G-EILPYFNEIFDALCKLSADPDENVRSAAELLD 92 (97)
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 46777777788 57899999999999999999753 3 4444433 456778899999999999885543
No 94
>KOG4500|consensus
Probab=66.14 E-value=2e+02 Score=31.17 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhc--c--CcchHHHHHHHHHHHHhhcChhHH
Q psy4828 176 YLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS--G--RVNFQIQYQLIFCLWVLTFNPKLA 251 (448)
Q Consensus 176 ~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~--~--~~~~Ql~Y~~ll~lWlLSF~~~~~ 251 (448)
|++++-+-+.+.+.+.+-.+.-++.+..|++..-..|++++.+..|++.|. + ..++..||.+|-++-=|---..-.
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 444444444454556665678889999999999999999999999998883 2 237899999888776654322222
Q ss_pred HhhhcCCCHHHHHHHhhh
Q psy4828 252 DRMNKFNVIPTLADILSD 269 (448)
Q Consensus 252 ~~l~~~~iI~~L~~ilk~ 269 (448)
..|...|+...+.-.++.
T Consensus 396 a~~~~aGvteaIL~~lk~ 413 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKL 413 (604)
T ss_pred hhccccchHHHHHHHHHh
Confidence 333344666555555543
No 95
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=66.06 E-value=37 Score=28.33 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=52.3
Q ss_pred hHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHH-HHHHHHHHhhccc
Q psy4828 135 CSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQ-SVARCLQMMLRID 206 (448)
Q Consensus 135 ~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~-~~~~~l~~lL~~~ 206 (448)
|.--+..|+.+..+|+-.++..|+.|+...+ .+...++..+..+.++|+. +++|+- .++++|..|...-
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD-EDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHC
Confidence 4455677788889999999999999998665 3455678888888888865 466664 4688888877654
No 96
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.41 E-value=13 Score=43.23 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
...+-.|++.| ++.||.|-..|+--||++-. -++...+.++|.++|++||+.|+.+++++
T Consensus 620 ~~~~~~L~~~L-~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 620 APSVAELAPYL-ADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred chhHHHHHHHh-cCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44556777888 57889898888888887742 13456677778888888888888887776
No 97
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=64.31 E-value=27 Score=34.36 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=95.5
Q ss_pred HHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHH-HHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHh
Q psy4828 62 FITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTI-QYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLN 140 (448)
Q Consensus 62 ~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~v-qyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~ 140 (448)
+++-+-+. ++.|.-+++..-+.|.-+|++..++-++-+++ -..|-.|..++..+..-+--|.. ..+..+..++
T Consensus 123 lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-----tTeivPLcLr 196 (315)
T COG5209 123 LLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-----TTEIVPLCLR 196 (315)
T ss_pred HHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-----hhhHHHHHHH
Confidence 33444333 34555667666677888888888887776655 46788999999877544433444 2366777899
Q ss_pred hhcCCchhHHHHHHHHHHHHHhcccCCC-ChhhHHHHH------HHHHHHhh-hcCChhHHHHHHHHHHhhccchhhHHH
Q psy4828 141 LLNGSDGFIINMTAKIIAKIACWSVDLL-NPSDLNFYL------TWLKDQLK-LANNDYMQSVARCLQMMLRIDEYRIAF 212 (448)
Q Consensus 141 lL~~~d~~I~~~a~~iLt~l~~~~~~~~-~~~~l~~~l------~~l~~~L~-~~~~~~~~~~~~~l~~lL~~~~~R~~f 212 (448)
.......--+..|.+|+.++++++...- -=+.+++|. +-+.+++- ..+......+++|+-++-..++.|...
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 9998888899999999999997542100 011123332 22222332 234556667899999999999999876
Q ss_pred H
Q psy4828 213 I 213 (448)
Q Consensus 213 ~ 213 (448)
-
T Consensus 277 ~ 277 (315)
T COG5209 277 S 277 (315)
T ss_pred h
Confidence 4
No 98
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.76 E-value=20 Score=29.90 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=41.4
Q ss_pred chhHHhhCCCCHHhHHHHHHh--hcCChHHHHH---HHhhchhHHHHHHHHHhcccChhhH
Q psy4828 46 WNTYQQSQMISKEDYDFITVF--DTASSAKRAE---MLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 46 W~~~~ra~~is~~d~~~ik~~--d~~~~~~r~~---~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
|+++...|.+|++|.+-|++- .+.+.++-.+ -+. .|+.....|+..|..+...+.
T Consensus 25 ~d~ll~~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 25 CDKCLEQGLLTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred HHHHHhcCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 899999999999999999996 2222332222 344 778899999999999776554
No 99
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=63.42 E-value=68 Score=31.87 Aligned_cols=66 Identities=14% Similarity=0.311 Sum_probs=49.7
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhccc-CCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccch
Q psy4828 140 NLLNGSDGFIINMTAKIIAKIACWSV-DLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDE 207 (448)
Q Consensus 140 ~lL~~~d~~I~~~a~~iLt~l~~~~~-~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~ 207 (448)
..|.++|+.++.+|...|+.+++.-+ ...+.+++.-++++..+.+. +...+..++.++..|.+.+.
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~ 72 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKN 72 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcC
Confidence 45788999999999999999887654 44678889999999998884 33344445677777775555
No 100
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=63.21 E-value=21 Score=29.65 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=43.2
Q ss_pred HHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChH--HHHHHHhhchhHHHHHHHHHhcccChhh
Q psy4828 38 EVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSA--KRAEMLNERRGHAAKTFLNLLEHISKDS 100 (448)
Q Consensus 38 ~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~--~r~~~~~~~~~~~~~~~l~lL~~~~~~d 100 (448)
.++..+| |+.+.+.|++|+++.+.|......... .-..++...|+.....|...|...+.++
T Consensus 19 ~l~~~~v-~~~L~~~gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 19 ELVLDEL-LIHLLQKDILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEH 82 (90)
T ss_pred HCCHHHH-HHHHHHcCCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHH
Confidence 3333343 889999999999999999986543222 2225777888888888888887644333
No 101
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=61.54 E-value=45 Score=34.65 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=67.4
Q ss_pred ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCc-chHHHHHHHHHHHHhhcC
Q psy4828 169 NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV-NFQIQYQLIFCLWVLTFN 247 (448)
Q Consensus 169 ~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~-~~Ql~Y~~ll~lWlLSF~ 247 (448)
..++++++++-|. .+++.......+-.|..-+..+++|..|-.++.++.++..+.+.. ....-|.+..++++++=+
T Consensus 19 f~Dev~ylld~l~---~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d 95 (361)
T PF07814_consen 19 FADEVEYLLDGLE---SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD 95 (361)
T ss_pred HHHHHHHHHhhcc---cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC
Confidence 3567777777776 222333333455556667889999999999999999998885443 347788888888888888
Q ss_pred hhHHHhhhcCCCHHHHHHHhh
Q psy4828 248 PKLADRMNKFNVIPTLADILS 268 (448)
Q Consensus 248 ~~~~~~l~~~~iI~~L~~ilk 268 (448)
......+...+....+..+++
T Consensus 96 ~~~~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 96 GLNMHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred CcchhhhhchhHHHHHHHHhc
Confidence 766666544444555566665
No 102
>KOG0168|consensus
Probab=59.83 E-value=3.4e+02 Score=31.76 Aligned_cols=344 Identities=16% Similarity=0.135 Sum_probs=168.1
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHH-hhhcCCchhHHHHHHHHHHHHH
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFL-NLLNGSDGFIINMTAKIIAKIA 161 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl-~lL~~~d~~I~~~a~~iLt~l~ 161 (448)
+..+..++.||++-++.|++-.+...+..|+...|+-..+..+. +..+.|+ +|+.=+.--+.++++.-|-+|-
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~------~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE------HAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc------cchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 35788889999999999999999999999999999877766654 4555564 4444455556777777777765
Q ss_pred hcccCC-CC---hhhHHHHHHHHHHH-----h----------hhcCChhHHHHHHHHHHhhccchhhHH-----------
Q psy4828 162 CWSVDL-LN---PSDLNFYLTWLKDQ-----L----------KLANNDYMQSVARCLQMMLRIDEYRIA----------- 211 (448)
Q Consensus 162 ~~~~~~-~~---~~~l~~~l~~l~~~-----L----------~~~~~~~~~~~~~~l~~lL~~~~~R~~----------- 211 (448)
...+.. .. -.+.-.|++|++.- | ++....++-.++-.|..+|....-+.+
T Consensus 284 R~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 284 RRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred hhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 544311 11 12224566666531 1 111122333344555555544432221
Q ss_pred ------------HHhhcchhhHHHhhc-c--CcchHHHHHHHHHHHHhhcC-hhHHHhhhcCCCHHHHHHHhhhhhhhh-
Q psy4828 212 ------------FINVDGIRTLLSVLS-G--RVNFQIQYQLIFCLWVLTFN-PKLADRMNKFNVIPTLADILSDSVKEK- 274 (448)
Q Consensus 212 ------------f~~~~gv~~L~~lL~-~--~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~iI~~L~~ilk~~~KEK- 274 (448)
+..++.+....++|. + ..+.-+---++..+-+|+-. +.....+.+.+|...|.+++.-..+--
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 112222333344442 1 11111111233444455555 566677777888889999986665543
Q ss_pred ----hcccCCCchhHHHH-HHH-----------HHHhcchHHHHHHHhcC---CCCChHH-----HHHHHHHHHHHHHHh
Q psy4828 275 ----NLIEKPTEPALAKE-NCI-----------AMVQSKVLKQLSILEQR---KFDDEDI-----VEDVQFLNEKLQASV 330 (448)
Q Consensus 275 ----NLl~~~~~~~~~~~-~~~-----------~mv~~~~l~~l~~L~~r---k~~Dedl-----~edl~~L~e~L~~~~ 330 (448)
-++..+|...--.. ... -.|+|-+..-+-++... .|.|.-. .+-...+.+..++..
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 24444432110000 000 01111122222222222 2322210 011111111111110
Q ss_pred hhc-chHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCc--c
Q psy4828 331 QDL-SSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCP--R 407 (448)
Q Consensus 331 ~~l-TsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p--~ 407 (448)
-+- ---|.|. = --.++|-++-=..|..=--.++..|+++...|.|+.|==-.+.-|+.+|.+-. .
T Consensus 524 ~t~~~~~dkl~---------~---~~r~~~l~nqpel~q~F~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~sel 591 (1051)
T KOG0168|consen 524 GTSRKQQDKLN---------G---SAREGLLKNQPELLQSFGKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSEL 591 (1051)
T ss_pred ccchhhhhhcC---------C---chhhhhhhcCHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHH
Confidence 000 0011111 0 01234444333334333445677888888778888765555555666555422 2
Q ss_pred hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 408 GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 408 gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
-+.++..-..-..+--.++++|..|---||+-.--||
T Consensus 592 i~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLm 628 (1051)
T KOG0168|consen 592 IGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILM 628 (1051)
T ss_pred HHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHH
Confidence 2334444444445666667777777766666554444
No 103
>KOG1062|consensus
Probab=59.52 E-value=3.3e+02 Score=31.51 Aligned_cols=248 Identities=17% Similarity=0.243 Sum_probs=129.9
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHH-HHHHHHHH-hhccchhhHHHHhhcc
Q psy4828 140 NLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQ-SVARCLQM-MLRIDEYRIAFINVDG 217 (448)
Q Consensus 140 ~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~-~~~~~l~~-lL~~~~~R~~f~~~~g 217 (448)
+=|++++.|++=+|+..|..+.... -...+..-+-+.++. .++|+. -|+.|..+ ..+.|+.-..|..
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~E-------mardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~P~l~e~f~~--- 182 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSPE-------MARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKVPDLVEHFVI--- 182 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCHH-------HhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcCchHHHHhhH---
Confidence 3457789999999999888876322 122233333344444 345543 35555554 5556666666542
Q ss_pred hhhHHHhhc-cCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhh-----hhhcccCCCchhHHHHHHH
Q psy4828 218 IRTLLSVLS-GRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVK-----EKNLIEKPTEPALAKENCI 291 (448)
Q Consensus 218 v~~L~~lL~-~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~K-----EKNLl~~~~~~~~~~~~~~ 291 (448)
..-++|. ...|+=+ =-+.+|.=+..-+++....|.+ ++|.++.+||.-.- |-|.-.-+ .
T Consensus 183 --~~~~lL~ek~hGVL~-~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~----------d 247 (866)
T KOG1062|consen 183 --AFRKLLCEKHHGVLI-AGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGIS----------D 247 (866)
T ss_pred --HHHHHHhhcCCceee-eHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCC----------c
Confidence 2233342 2222111 0222333344556666666654 78899999877532 22333222 1
Q ss_pred HHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcch------HHHHHH--HHhhCCcccCCCCCChhHHHhc
Q psy4828 292 AMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSS------FDEYKT--EVKSGRLEWSPVHRSAQFWREN 363 (448)
Q Consensus 292 ~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTs------fDeY~~--El~SG~L~WSP~H~se~FW~EN 363 (448)
-.+++.++++|..|-.. |+|..+-+.-+...+..+...=.+ ||.-++ -+++ -++.
T Consensus 248 PFLQi~iLrlLriLGq~---d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~----~~~L---------- 310 (866)
T KOG1062|consen 248 PFLQIRILRLLRILGQN---DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS----NSGL---------- 310 (866)
T ss_pred hHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC----CchH----------
Confidence 35667888888888655 777666555544443322211000 010000 0000 0000
Q ss_pred hhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 364 APRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 364 ~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
.--.+..|.+.| .++|..+-=||.+-++-.|..-|. .+++. ..-|.+.+.++|+-+|+.||-=.=+|
T Consensus 311 -------rvlainiLgkFL-~n~d~NirYvaLn~L~r~V~~d~~---avqrH--r~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 311 -------RVLAINILGKFL-LNRDNNIRYVALNMLLRVVQQDPT---AVQRH--RSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred -------HHHHHHHHHHHh-cCCccceeeeehhhHHhhhcCCcH---HHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 023344455555 355555556666666666655443 33333 25789999999999999999654443
No 104
>KOG0168|consensus
Probab=59.19 E-value=59 Score=37.57 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=86.2
Q ss_pred chHHHHHHHhcCCCCCh-HHHHHHHHHHHHHHHHhhh-cchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHH
Q psy4828 297 KVLKQLSILEQRKFDDE-DIVEDVQFLNEKLQASVQD-LSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYEL 374 (448)
Q Consensus 297 ~~l~~l~~L~~rk~~De-dl~edl~~L~e~L~~~~~~-lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~l 374 (448)
++-++|++|+... || --.+.+..|.++|---.++ |++|- + -.+
T Consensus 168 k~kkLL~gL~~~~--Des~Qleal~Elce~L~mgnEesLs~fp---------------v------------------~sl 212 (1051)
T KOG0168|consen 168 KAKKLLQGLQAES--DESQQLEALTELCEMLSMGNEESLSGFP---------------V------------------KSL 212 (1051)
T ss_pred HHHHHHHhccccC--ChHHHHHHHHHHHHHHhhcchhhhcccc---------------H------------------HHH
Confidence 5668888888776 55 3567777888887655443 44442 2 258
Q ss_pred HHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHH-hhhcCCChhHHHHHHHHHHHHh
Q psy4828 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVM-QLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 375 lk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM-~Lm~h~d~eVr~eAL~avQklm 444 (448)
+-.|+.||....++.+.--||-.+..++.-+|+.-.++=+.|+-..+. +|+.=+==+|.-++|.|+-||=
T Consensus 213 vp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS 283 (1051)
T KOG0168|consen 213 VPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS 283 (1051)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 899999998778899999999999999999999999988877655333 3445556689999999998873
No 105
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=58.69 E-value=35 Score=33.99 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=61.0
Q ss_pred HHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHH
Q psy4828 342 EVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLV 421 (448)
Q Consensus 342 El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~v 421 (448)
.|.-|.+==.|+.+ .- |. ....++.|+++|+.+..+.+.+-+..-+-.....+|.--...+++||-..|
T Consensus 113 ~vLQGl~LLHp~Sr-~l--------F~--r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v 181 (257)
T PF08045_consen 113 RVLQGLCLLHPPSR-KL--------FH--REQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV 181 (257)
T ss_pred HHHHHHHHcCchHH-HH--------Hh--hhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence 34445555666664 11 22 356788899999656666666556666677777779888899999999999
Q ss_pred HhhhcC--CChhHHHHHH
Q psy4828 422 MQLLSH--EDPNVRYEAL 437 (448)
Q Consensus 422 M~Lm~h--~d~eVr~eAL 437 (448)
-.++++ -+.+||..-+
T Consensus 182 ~~llk~~~~~~~~r~K~~ 199 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCI 199 (257)
T ss_pred HHHHccccccHHHhHHHH
Confidence 999975 4788886544
No 106
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=58.66 E-value=1.4e+02 Score=29.60 Aligned_cols=90 Identities=14% Similarity=0.250 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCC--chhHHHHHHHHHHHHH
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGS--DGFIINMTAKIIAKIA 161 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~--d~~I~~~a~~iLt~l~ 161 (448)
....+++++++. + ++ ++..+++|.+.++-.|+ |-..+ .+-..++.+++..+ |.|++-.|+..|+.+.
T Consensus 73 ~A~~~li~l~~~-~-~~---~~~~l~GD~~tE~l~~i--lasv~----~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~ 141 (249)
T PF06685_consen 73 RALPPLIRLFSQ-D-DD---FLEDLFGDFITEDLPRI--LASVG----DGDIEPLKELIEDPDADEYVRMAAISALAFLV 141 (249)
T ss_pred hhHHHHHHHHcC-C-cc---hHHHHHcchhHhHHHHH--HHHHh----CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 345566677755 2 22 44556677666664443 22321 13456777888776 7899999999999999
Q ss_pred hcccCCCChhhHHHHHHHHHHHhh
Q psy4828 162 CWSVDLLNPSDLNFYLTWLKDQLK 185 (448)
Q Consensus 162 ~~~~~~~~~~~l~~~l~~l~~~L~ 185 (448)
..|+.. .++.+..|-.++...+.
T Consensus 142 ~~~~~~-Re~vi~~f~~ll~~~l~ 164 (249)
T PF06685_consen 142 HEGPIS-REEVIQYFRELLNYFLE 164 (249)
T ss_pred HcCCCC-HHHHHHHHHHHHHHHhc
Confidence 888631 33344555555555553
No 107
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=58.60 E-value=30 Score=27.48 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=36.7
Q ss_pred hhHHhhCCCCHHhHHHHHHhhcCChHHHH----HHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 47 NTYQQSQMISKEDYDFITVFDTASSAKRA----EMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 47 ~~~~ra~~is~~d~~~ik~~d~~~~~~r~----~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
+.+..-|.||++|++.|+. ... ...|. .++...|+.....|+..|.+ ..+..
T Consensus 23 d~L~~~~vlt~~e~e~I~~-~~t-~~~k~~~LLd~l~~kg~~a~~~F~~~L~~-~~~~L 78 (85)
T PF00619_consen 23 DHLLSRGVLTEEEYEEIRS-EPT-RQDKARKLLDILKRKGPEAFDIFCQALRE-NQPHL 78 (85)
T ss_dssp HHHHHTTSSSHHHHHHHHT-SSS-HHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHCCCCCHHHHHHHHc-cCC-hHHHHHHHHHHHHHHCHHHHHHHHHHHHh-hCHHH
Confidence 3456678999999999999 333 33333 46677777788888888877 44444
No 108
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=58.26 E-value=44 Score=28.38 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEA 436 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eA 436 (448)
-.+++.|++-.. ..++..-.-+..=+..++++ |.|..++.++|+...+=++..+-+++.+-+.
T Consensus 29 ~~Ll~~LleWFn-f~~~~~~~~VL~Ll~~L~~~-~~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 29 RLLLKQLLEWFN-FPPVPMKEEVLALLLRLLKS-PYAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred HHHHHHHHHHhC-CCCCccHHHHHHHHHHHHhC-cHHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 466777777763 22222222222234456665 9999999999999998888888888776543
No 109
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=54.12 E-value=2.7e+02 Score=28.80 Aligned_cols=156 Identities=17% Similarity=0.279 Sum_probs=84.4
Q ss_pred hHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC---ChhhHHHHHHHHHHHhhhcCChhHH--HHHHHHHHhhccchhh
Q psy4828 135 CSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL---NPSDLNFYLTWLKDQLKLANNDYMQ--SVARCLQMMLRIDEYR 209 (448)
Q Consensus 135 ~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~---~~~~l~~~l~~l~~~L~~~~~~~~~--~~~~~l~~lL~~~~~R 209 (448)
+..|.+....+.=-|.--|+.++.-++...+.-. =......|+.+....|.+ ++|+- -.++.|.++|-.+.+.
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s--~NYvtkrqslkLL~ellldr~n~ 243 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES--SNYVTKRQSLKLLGELLLDRSNF 243 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT---SSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC--CCeEeehhhHHHHHHHHHchhHH
Confidence 4446677666555577777788877776442100 022236677767766654 57753 3578888888877775
Q ss_pred HH---HHh-hcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhH
Q psy4828 210 IA---FIN-VDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPAL 285 (448)
Q Consensus 210 ~~---f~~-~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~ 285 (448)
.+ |.. .+..+.++.+|+++. -.+||++.-++=+.--||.= =|.+.+||. ++
T Consensus 244 ~vm~~yi~~~~nLkl~M~lL~d~s-k~Iq~eAFhvFKvFVANp~K---------~~~I~~iL~----------~N----- 298 (335)
T PF08569_consen 244 NVMTRYISSPENLKLMMNLLRDKS-KNIQFEAFHVFKVFVANPNK---------PPPIVDILI----------KN----- 298 (335)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS----------BHHHHHHHH----------HT-----
T ss_pred HHHHHHHCCHHHHHHHHHHhcCcc-hhhhHHHHHHHHHHHhCCCC---------ChHHHHHHH----------HH-----
Confidence 54 332 245777888887543 33555776655544333311 122333321 11
Q ss_pred HHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHH
Q psy4828 286 AKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKL 326 (448)
Q Consensus 286 ~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L 326 (448)
..+++..+......+-.|+...++=++|...+
T Consensus 299 ---------r~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i 330 (335)
T PF08569_consen 299 ---------REKLLRFLKDFHTDRTDDEQFEDEKAYLIKQI 330 (335)
T ss_dssp ---------HHHHHHHHHTTTTT--S-CHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCCCCccccHHHHHHHHHHHH
Confidence 02456666666655556777777766665544
No 110
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=54.00 E-value=25 Score=34.17 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHH
Q psy4828 371 NYELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQK 442 (448)
Q Consensus 371 ~~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 442 (448)
+-++++.+..+|-.. -|-.|=--=-+|||-+.||.-.--++|... .||+||.+-|.|.|.
T Consensus 102 SAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRHHSNLLAnI------------gdP~VreqVLsAMqE 162 (238)
T PF02084_consen 102 SAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRHHSNLLANI------------GDPEVREQVLSAMQE 162 (238)
T ss_pred cHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHHHHHHHhhc------------CCHHHHHHHHHHHhh
Confidence 478888888888421 111111112389999999855444444433 588888888888774
No 111
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=53.54 E-value=2.8e+02 Score=28.83 Aligned_cols=218 Identities=15% Similarity=0.127 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhhccchhhHHHHhhcchhh---HHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHh
Q psy4828 191 YMQSVARCLQMMLRIDEYRIAFINVDGIRT---LLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADIL 267 (448)
Q Consensus 191 ~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~---L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~il 267 (448)
...-+++|+..++..++.-..+-...+.-. ....|.+...... =+...+|+||...-....+. .+.+..++.++
T Consensus 62 L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~--i~~~~l~~ls~Q~f~~~~~~-~~~~~~l~~~l 138 (372)
T PF12231_consen 62 LVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKS--ICTHYLWCLSDQKFSPKIMT-SDRVERLLAAL 138 (372)
T ss_pred HHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCCCcccc-hhhHHHHHHHH
Confidence 344578999999998887776555444322 2333433333333 34556788875543333332 23344555554
Q ss_pred hhh---------hhhh-----hcccCCCchhHHHHHHHHHHhcc---hHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHh
Q psy4828 268 SDS---------VKEK-----NLIEKPTEPALAKENCIAMVQSK---VLKQLSILEQRKFDDEDIVEDVQFLNEKLQASV 330 (448)
Q Consensus 268 k~~---------~KEK-----NLl~~~~~~~~~~~~~~~mv~~~---~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~ 330 (448)
... .-|+ +|+.+.|. .|+.+- ++.++..+.. ++.++..-+..+.+.+...+
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q~p~---------~M~~~~~~W~~~l~~~l~~---~~k~ir~~a~~l~~~~~~~l 206 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQFPQ---------QMIKHADIWFPILFPDLLS---SAKDIRTKAISLLLEAKKCL 206 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHh
Confidence 332 4566 77777764 455532 3455555553 35666666666655554444
Q ss_pred hhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCC-hhHHHHHHhhHhhHhhhCcchh
Q psy4828 331 QDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRD-PLVLSVASYDIGEYVRHCPRGK 409 (448)
Q Consensus 331 ~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D-~~vlaVAc~DIge~vr~~p~gr 409 (448)
..-..+-+-..|+.+..+.=. +| --.+.++|.+++...++ +.+.-+= +.++......+
T Consensus 207 ~~~~~~s~~~~~~~~~~~~~~--------------~~---~~~~~~~L~~mi~~~~~~~~a~~iW----~~~i~LL~~~~ 265 (372)
T PF12231_consen 207 GPNKELSKSVLEDLQRSLENG--------------KL---IQLYCERLKEMIKSKDEYKLAMQIW----SVVILLLGSSR 265 (372)
T ss_pred ChhHHHHHHHHHHhccccccc--------------cH---HHHHHHHHHHHHhCcCCcchHHHHH----HHHHHHhCCch
Confidence 322223333333332111100 00 12344556666633222 2221111 22222221111
Q ss_pred -HHHHHhCcHHHHHh-hhcCCChhHHHHHHHHHHHHh
Q psy4828 410 -HVIEQLGGKQLVMQ-LLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 410 -~il~~lg~K~~vM~-Lm~h~d~eVr~eAL~avQklm 444 (448)
.-.+-++-=-.|.+ -.+++|+.||.+|+.|=-.++
T Consensus 266 ~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 266 LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLI 302 (372)
T ss_pred hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 11111121124444 669999999999999865553
No 112
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=53.35 E-value=28 Score=22.55 Aligned_cols=31 Identities=35% Similarity=0.568 Sum_probs=25.4
Q ss_pred HHHHHHHhhccCCChhHHHHHHhhHhhHhhhC
Q psy4828 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHC 405 (448)
Q Consensus 374 llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~ 405 (448)
++..+.++| ...++.|=.-|+.-+|.++++.
T Consensus 1 llp~l~~~l-~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLL-NDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHH-T-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhC
Confidence 467788899 4788999999999999999863
No 113
>KOG2256|consensus
Probab=52.96 E-value=3.3e+02 Score=30.70 Aligned_cols=173 Identities=16% Similarity=0.287 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhc---hhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHH
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQED---RSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAK 159 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~---~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~ 159 (448)
..|....++|++.+++..++...|..+..++.-- |...+.+.+. .+.+=...+.-++..|+-+|-.
T Consensus 240 KsYl~s~l~Ll~~~t~te~~~~~L~~l~~l~~~~~~f~k~lk~liK~-----------~V~vWstge~~~rv~Afl~l~~ 308 (661)
T KOG2256|consen 240 KSYLGSSLHLLNQLTDTEVLAFTLRHLTVLVPFLATFPKLLKKLIKA-----------VVHVWSTGEESLRVLAFLCLID 308 (661)
T ss_pred HHHhHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----------HheeeccCCcchhhHHHHHHHH
Confidence 3588889999999999999999998887776332 2222222221 1222233577788888877775
Q ss_pred HHh-cccCCCChhhH-HHHHHHHHHH-hhhcC-ChhHHHHHHHHHHhhccc---hhhHHHHhhcchhhHHHhh------c
Q psy4828 160 IAC-WSVDLLNPSDL-NFYLTWLKDQ-LKLAN-NDYMQSVARCLQMMLRID---EYRIAFINVDGIRTLLSVL------S 226 (448)
Q Consensus 160 l~~-~~~~~~~~~~l-~~~l~~l~~~-L~~~~-~~~~~~~~~~l~~lL~~~---~~R~~f~~~~gv~~L~~lL------~ 226 (448)
+.. .++... ...+ ..|+.++.+. ..+++ -+.+...-.++.+|+..+ .|...|. -+..|.-.| .
T Consensus 309 l~~~~~~~~l-~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~---yIrQLAihLRnam~~k 384 (661)
T KOG2256|consen 309 LCRKFKSTCL-DPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFV---YIRQLAIHLRNAMITK 384 (661)
T ss_pred HHHHhhhHHH-HHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHH---HHHHHHHHHHHHhhcC
Confidence 543 222211 1122 4566666643 22211 122223446666666554 3555554 233333222 1
Q ss_pred cCcchHH----HHHHHHHHHH--hhcChhHHHhhhcCCCHHHHHHHhhhhhh
Q psy4828 227 GRVNFQI----QYQLIFCLWV--LTFNPKLADRMNKFNVIPTLADILSDSVK 272 (448)
Q Consensus 227 ~~~~~Ql----~Y~~ll~lWl--LSF~~~~~~~l~~~~iI~~L~~ilk~~~K 272 (448)
++-.+|. ||=-|+=+|+ +||.......+. .++++|+++.--.+|
T Consensus 385 ~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq--~LvYpLvQvi~Gvir 434 (661)
T KOG2256|consen 385 NKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQ--PLVYPLVQVILGVIR 434 (661)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhh--hhhhHHHHHHHHHhh
Confidence 3334444 4455666784 888555555554 356677777655544
No 114
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=52.82 E-value=18 Score=29.07 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhC
Q psy4828 371 NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLG 416 (448)
Q Consensus 371 ~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg 416 (448)
+.+++..++++-+++.-..+-..|.+-+|-+.+- ++|..+++++|
T Consensus 26 ~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 26 ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 5689999999998888889999999999999998 99999999987
No 115
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=51.83 E-value=39 Score=27.78 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=42.6
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCChH--HHHHHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTASSA--KRAEMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~~~--~r~~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
=|+.+...|.+|+++.+.|+.-...... .-..++...|+.....|.+.|...+.++.
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 4889999999999999999985543222 22257788888888899999987654443
No 116
>KOG1061|consensus
Probab=51.44 E-value=4.3e+02 Score=30.33 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=54.3
Q ss_pred chhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccch
Q psy4828 133 PVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDE 207 (448)
Q Consensus 133 ~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~ 207 (448)
.-+.|+.+.++.+++|++-.|...++++...+++-... ..|++-|.+.+..+++..+..|+.+|+++.....
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~---~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED---SGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc---cchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 45678999999999999999999999998766533233 4566777777765566777788888887666553
No 117
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=51.29 E-value=68 Score=34.38 Aligned_cols=128 Identities=13% Similarity=0.180 Sum_probs=84.7
Q ss_pred cccccccccHHHHHHHHHhcCCCCchhHH---hhCCCCHHhHHHHHHhhcCC---hHHHHHHHhhchhHHHHHHHHHhcc
Q psy4828 22 KTDMIAATSVLQQQATEVRNQRPNWNTYQ---QSQMISKEDYDFITVFDTAS---SAKRAEMLNERRGHAAKTFLNLLEH 95 (448)
Q Consensus 22 ~~~~~~~~~~l~~~~~~ir~r~i~W~~~~---ra~~is~~d~~~ik~~d~~~---~~~r~~~~~~~~~~~~~~~l~lL~~ 95 (448)
+.|..-+=..|.+.-.+.-..--.||.|. ++|-+.= .-.++.. .++-..+ +++.-+..+.++++|.+
T Consensus 292 DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W------Sp~H~se~FW~EN~~kf-~~~~~~llk~L~~iL~~ 364 (429)
T cd00256 292 DEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW------SPVHKSEKFWRENADRL-NEKNYELLKILIHLLET 364 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC------CCCCCCchHHHHHHHHH-HhcchHHHHHHHHHHhc
Confidence 45555555566665555555555677765 3333321 1111111 1222233 34434778999999987
Q ss_pred cChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 96 ISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 96 ~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
..++.++.-++.=|.++++..|..-.++.+++. =.-.+.+++++|+-|+..|+..+.+|+.
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~------K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGG------KQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCc------HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 677888888888889999999977776766632 3457999999999999999999999874
No 118
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=51.15 E-value=37 Score=36.02 Aligned_cols=58 Identities=31% Similarity=0.284 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 374 llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
-...|+.+| ++.|+.|-+-|+--+|.+-+. .+...+...+.|+|++||..|+.+...+
T Consensus 148 ~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 148 PGPALEAAL-THEDALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 445788888 489999999999999998653 3344455669999999999999887544
No 119
>COG5562 Phage envelope protein [General function prediction only]
Probab=50.21 E-value=15 Score=32.94 Aligned_cols=33 Identities=15% Similarity=0.536 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhcchHHHHHHHHhh-CCccc-CCCC
Q psy4828 322 LNEKLQASVQDLSSFDEYKTEVKS-GRLEW-SPVH 354 (448)
Q Consensus 322 L~e~L~~~~~~lTsfDeY~~El~S-G~L~W-SP~H 354 (448)
+.+.|..-..--|||+||++++-. |-++| .-.|
T Consensus 77 i~~al~~~qsGqttF~ef~~~la~AGVfrwv~di~ 111 (137)
T COG5562 77 IKTALRRHQSGQTTFEEFCSALAEAGVFRWVTDIN 111 (137)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHhCCeEEEEEEcc
Confidence 344455555567999999999988 99999 4444
No 120
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=49.22 E-value=2e+02 Score=25.95 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHhhchhHHH------HHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhh
Q psy4828 99 DSTIQYILVLIDDILQEDRSRVE------IFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSD 172 (448)
Q Consensus 99 ~d~vqyvL~li~dll~~~~~~~~------~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~ 172 (448)
.....+.|.++..++...+.... .|... -+....+.+++.+.+++..|...+++++..++..-.. .=..+
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~---lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~-~Lk~e 111 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINL---LKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRS-HLKLE 111 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 34567888888888877654333 22221 2336677788888888888999999999999853221 12456
Q ss_pred HHHHHHHHHH-HhhhcCC--hhHHHHHHHHHHhhccchhhH
Q psy4828 173 LNFYLTWLKD-QLKLANN--DYMQSVARCLQMMLRIDEYRI 210 (448)
Q Consensus 173 l~~~l~~l~~-~L~~~~~--~~~~~~~~~l~~lL~~~~~R~ 210 (448)
++-|++.+.. .+.+..+ .....+..++..+.+.+..=.
T Consensus 112 le~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~ 152 (168)
T PF12783_consen 112 LEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLV 152 (168)
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHH
Confidence 7888888876 4443322 233356788888887776543
No 121
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=47.18 E-value=49 Score=28.30 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=36.6
Q ss_pred hCcchhHHHHHhCcHHHHHhhhc--CCChhHHHHHHHHHHHHhccC
Q psy4828 404 HCPRGKHVIEQLGGKQLVMQLLS--HEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 404 ~~p~gr~il~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~~~ 447 (448)
..|.-...+.++||-..|++... ..||=+|-.|+.|+.-|+-.|
T Consensus 16 ~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 16 KNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred CCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 45777888889999999999886 458999999999998887543
No 122
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=47.14 E-value=53 Score=30.97 Aligned_cols=72 Identities=29% Similarity=0.397 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHH---HHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHV---IEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~i---l~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.++=+.|...|...+++.++.-.+-.++-+|..-|..|=- +.++- ..|..++.|.|++|+-.||.|..-+..
T Consensus 100 ~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v--~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 100 MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVV--TQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHH--HHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 4666788888877789999999999999999998977643 33322 467788899999999999999887754
No 123
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=47.08 E-value=1e+02 Score=25.15 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChH-HHHHHHh---h-ch-hHHHHHHHHHhcccChhhHHHH
Q psy4828 31 VLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSA-KRAEMLN---E-RR-GHAAKTFLNLLEHISKDSTIQY 104 (448)
Q Consensus 31 ~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~-~r~~~~~---~-~~-~~~~~~~l~lL~~~~~~d~vqy 104 (448)
+|..+++++-+. |..++|.=-+|+.|...|+.=..-+.. +..+++. . .| ..-+..++..|.++.+.|++++
T Consensus 6 ~l~~ia~~LG~d---Wk~LAr~Lg~se~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~r~Div~~ 82 (84)
T cd08804 6 RLAVIADHLGFS---WTELARELDFTEEQIHQIRIENPNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKINRMDIVHL 82 (84)
T ss_pred HHHHHHHHHhhh---HHHHHHHcCCCHHHHHHHHHHCcccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcChHHHHHH
Confidence 455666665444 999999999999999999874322222 3334432 2 22 2445679999999999999987
Q ss_pred H
Q psy4828 105 I 105 (448)
Q Consensus 105 v 105 (448)
+
T Consensus 83 ~ 83 (84)
T cd08804 83 M 83 (84)
T ss_pred h
Confidence 5
No 124
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=45.44 E-value=64 Score=32.16 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=49.5
Q ss_pred HHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhc-CCChhHHHHHHHHHHHHhccC
Q psy4828 390 VLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLS-HEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 390 vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~~ 447 (448)
.++-|..=|.-.+=.||..|.+..+.++-..++.|+. ...+.|...+|.|+--+|+.+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~ 165 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS 165 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC
Confidence 3455667778888889999999999999999999994 568999999999998888754
No 125
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=44.83 E-value=1.9e+02 Score=24.28 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=44.8
Q ss_pred hhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhc
Q psy4828 134 VCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLR 204 (448)
Q Consensus 134 ~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~ 204 (448)
-.+|.+..+..+|+-++.-|+.-|-.+....+..+ -..+...|+.|.....- .++-++.++..|-++|+
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D-~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD-PDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-CchhHHHHHHHHHHHhc
Confidence 45678899999999999999999888875443111 11223444444444332 34557778888887775
No 126
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=44.30 E-value=1.1e+02 Score=27.74 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=50.6
Q ss_pred HHHhhchhHHHHHHHHHhcccCh--------hhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCch
Q psy4828 76 EMLNERRGHAAKTFLNLLEHISK--------DSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDG 147 (448)
Q Consensus 76 ~~~~~~~~~~~~~~l~lL~~~~~--------~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~ 147 (448)
++++.+| ...++++|..+.. .+....++..+--++.....+..++ + .++....+...|.+++.
T Consensus 102 ~Fl~~~G---~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~-~-----~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 102 EFLELGG---LEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVL-S-----HPDSVNLIALSLDSPNI 172 (187)
T ss_dssp HH-HHHH---HHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHH-C-----SSSHHHHHHHT--TTSH
T ss_pred HhccCCC---HHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHH-c-----CcHHHHHHHHHHCCCCH
Confidence 5666777 5555555555422 2555667777877776665555433 3 34677888999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy4828 148 FIINMTAKIIAKIA 161 (448)
Q Consensus 148 ~I~~~a~~iLt~l~ 161 (448)
.+...++.+|+.+.
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
No 127
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=44.13 E-value=59 Score=23.52 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHH
Q psy4828 103 QYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKI 160 (448)
Q Consensus 103 qyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l 160 (448)
...+..|..+.+..+...+-+.. ...+.+.++|..+++.++..|+.-|..|
T Consensus 5 ~~A~~aLg~l~~~~~~~~~~~~~-------~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 5 RAAAWALGRLAEGCPELLQPYLP-------ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHCTTTTTHHHHHHHHH-------HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHhhHhcccHHHHHHHHH-------HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 34444555555454544443433 4567788888878888888888877643
No 128
>KOG0413|consensus
Probab=44.04 E-value=69 Score=37.70 Aligned_cols=106 Identities=12% Similarity=0.147 Sum_probs=64.1
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHH-HhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQF-LNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~f-l~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
|..+|++=|.....-.+..++...++|++.....-++ -|-|- -.-|.-++.+|.-+++.+|+.|++.
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d------------~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTD------------RYIPMIAASLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHH------------HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 7778888888755555667777788888855432222 24443 4556668999999999999999998
Q ss_pred ccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccc
Q psy4828 164 SVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRID 206 (448)
Q Consensus 164 ~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~ 206 (448)
+--+..++- |+.++...+.+ +.+.-..+--|+..+|..+
T Consensus 1037 ~~vKw~G~L---f~Rf~l~l~D~-~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1037 GIVKWNGEL---FIRFMLALLDA-NEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred hhhhcchhh---HHHHHHHHccc-CHHHHHHHHHHHHHHHhhc
Confidence 744444533 33334333322 2222223344555555444
No 129
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=43.71 E-value=67 Score=34.14 Aligned_cols=59 Identities=25% Similarity=0.228 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
-+....|+.+| ++.||.+-+.+.--+|..-. ..-..+..+|+|+|+.||.+|+.++.++
T Consensus 116 ~~a~~~L~~~L-~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 116 RQAEPWLEPLL-AASEPPGRAIGLAALGAHRH------------DPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred hHHHHHHHHHh-cCCChHHHHHHHHHHHhhcc------------ChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 46667788888 57788777666655554111 1234677888999999999999999876
No 130
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=43.67 E-value=2.9e+02 Score=26.07 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhh---------------cCC-ch
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLL---------------NGS-DG 147 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL---------------~~~-d~ 147 (448)
....+++.++-.-+..-+...++..+..|+.........-.+. ..+...|.||-..| .++ +.
T Consensus 39 ~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~--~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~ 116 (182)
T PF13251_consen 39 PATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES--KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSP 116 (182)
T ss_pred CCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc--CCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4455566666665777888999999999997754333322221 12345666664433 333 45
Q ss_pred hHHHHHHHHHHHHHhccc-CCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccc
Q psy4828 148 FIINMTAKIIAKIACWSV-DLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRID 206 (448)
Q Consensus 148 ~I~~~a~~iLt~l~~~~~-~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~ 206 (448)
.+....++.++.|++.-| .+++.+-+..++.-+...+...+++..-.+..|+..++...
T Consensus 117 ~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 117 PVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 566677888888877654 23466666777777777666655555545566776665543
No 131
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=42.35 E-value=1.2e+02 Score=24.19 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=46.3
Q ss_pred HHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 375 lk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
+..+..-|+...+.. -.-.|-|+-...+..|-...++..-++=..|-.|-.|+||+|+..|-.-+.
T Consensus 4 v~r~~~~l~~~~~~~-~~~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~ 69 (76)
T cd00183 4 VLRAKKKLEKKDSNE-EVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIK 69 (76)
T ss_pred HHHHHHHhhccccCC-CHHHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455554332211 123577777777888999999998886677888889999999988865543
No 132
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=42.22 E-value=23 Score=27.09 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=21.8
Q ss_pred CChhHHHHHHhhHhhHhh-------hCc-chhHHHHHhCcHHHH
Q psy4828 386 RDPLVLSVASYDIGEYVR-------HCP-RGKHVIEQLGGKQLV 421 (448)
Q Consensus 386 ~D~~vlaVAc~DIge~vr-------~~p-~gr~il~~lg~K~~v 421 (448)
.+...+|..+||||.... .|| .|..++.+.+....+
T Consensus 27 ~~~l~~AalLHDiG~~~~~~~~~~~~H~~~g~~~l~~~~~~~~~ 70 (80)
T TIGR00277 27 VELARRGALLHDIGKPITREGVIFESHAVVGAEIARKYGEPLEV 70 (80)
T ss_pred HHHHHHHHHHHccCCcccchHHHHHchHHHHHHHHHHcCCCHHH
Confidence 344678899999998853 112 355555555544333
No 133
>KOG1967|consensus
Probab=42.05 E-value=1.9e+02 Score=33.93 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=79.1
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
+..|++... +...+..-+-|+.+...+...|.-+ +... -..-.+.++.-|.-+|..++..+.+++..++...+
T Consensus 869 vP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~v--llp~----~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 869 VPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQV--LLPQ----FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHh--hccc----hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 444555554 2334444566678888887777622 2221 12345566778888999999999999998876654
Q ss_pred CCCChhhHHHHHHHHHHHhhhcCCh--h-HHHHHHHHHHhhc-cchhhHHHHhhcchhhHHHhhc
Q psy4828 166 DLLNPSDLNFYLTWLKDQLKLANND--Y-MQSVARCLQMMLR-IDEYRIAFINVDGIRTLLSVLS 226 (448)
Q Consensus 166 ~~~~~~~l~~~l~~l~~~L~~~~~~--~-~~~~~~~l~~lL~-~~~~R~~f~~~~gv~~L~~lL~ 226 (448)
. ...+++..++..+...=+++++. . ...++|||..+.+ .|..+-.-.....+..|...|+
T Consensus 942 t-L~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 942 T-LQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred c-cchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence 3 34456666666665433332322 1 2357899999999 5544333333344555555553
No 134
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=41.79 E-value=1.1e+02 Score=26.97 Aligned_cols=52 Identities=6% Similarity=-0.036 Sum_probs=35.1
Q ss_pred hhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHhh
Q psy4828 134 VCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQLK 185 (448)
Q Consensus 134 ~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L~ 185 (448)
....+-+-|.+.++-++..|+.+|-.++.....++..+.. ..|++-+...+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~ 90 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAK 90 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhC
Confidence 3445667788889999999999999998766544433333 255555555543
No 135
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.61 E-value=1.7e+02 Score=25.86 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHH
Q psy4828 100 STIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTW 179 (448)
Q Consensus 100 d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~ 179 (448)
-+=.|.+.=|+.+...++.-..-+.+. +++-|++.++.|..+|+++|--|...|+ +.|..|
T Consensus 16 p~pgy~~~Eia~~t~~s~~~~~ei~d~-----------L~kRL~~~~~hVK~K~Lrilk~l~~~G~--------~~f~~~ 76 (122)
T cd03572 16 PTPGYLYEEIAKLTRKSVGSCQELLEY-----------LLKRLKRSSPHVKLKVLKIIKHLCEKGN--------SDFKRE 76 (122)
T ss_pred CCchHHHHHHHHHHHcCHHHHHHHHHH-----------HHHHhcCCCCcchHHHHHHHHHHHhhCC--------HHHHHH
Confidence 355888888888887765544434443 7788888899999999999999998885 445555
Q ss_pred HHH
Q psy4828 180 LKD 182 (448)
Q Consensus 180 l~~ 182 (448)
+..
T Consensus 77 ~~~ 79 (122)
T cd03572 77 LQR 79 (122)
T ss_pred HHH
Confidence 553
No 136
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=41.17 E-value=89 Score=25.66 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCCchhHHhhCCCCHHhHHHHHHhhcCChHHHH-HHH---hh-c-hhHHHHHHHHHhcccChhhHHHHH
Q psy4828 43 RPNWNTYQQSQMISKEDYDFITVFDTASSAKRA-EML---NE-R-RGHAAKTFLNLLEHISKDSTIQYI 105 (448)
Q Consensus 43 ~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~-~~~---~~-~-~~~~~~~~l~lL~~~~~~d~vqyv 105 (448)
...|..+++.=.+|+.|...|+.=...+..++. +++ .. . ..+-+..++..|.++.+.|++.++
T Consensus 15 G~dW~~LA~eLg~s~~dI~~i~~e~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~~ 83 (84)
T cd08803 15 GLSWTELARELNFSVDEINQIRVENPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLL 83 (84)
T ss_pred hccHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHhc
Confidence 568999999999999999999652232232333 332 22 2 235677899999999999998764
No 137
>KOG1293|consensus
Probab=40.99 E-value=2.5e+02 Score=31.71 Aligned_cols=80 Identities=13% Similarity=0.186 Sum_probs=53.3
Q ss_pred HHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHH-hhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHH
Q psy4828 75 AEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDIL-QEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMT 153 (448)
Q Consensus 75 ~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll-~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a 153 (448)
..++..+| +..+.+.+.+ .+.-+.+..+-.+.++. .++..+...+.+- -|-.-.+.+.+.+|+.||+++
T Consensus 455 skfl~~ng---Id~l~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k------i~a~~i~~l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 455 SKFLRNNG---IDILESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAK------IPANLILDLINDPDWAVQEQC 524 (678)
T ss_pred HHHHHcCc---HHHHHHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHH------hhHHHHHHHHhCCCHHHHHHH
Confidence 34555555 5555666655 45556777777666654 5555555544441 344445667777899999999
Q ss_pred HHHHHHHHhcc
Q psy4828 154 AKIIAKIACWS 164 (448)
Q Consensus 154 ~~iLt~l~~~~ 164 (448)
+.+|-.|+|..
T Consensus 525 fqllRNl~c~~ 535 (678)
T KOG1293|consen 525 FQLLRNLTCNS 535 (678)
T ss_pred HHHHHHhhcCc
Confidence 99999999864
No 138
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.98 E-value=2.5e+02 Score=26.10 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=47.9
Q ss_pred CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHH------hhhcCCh----hHHHHHHHHH
Q psy4828 131 REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQ------LKLANND----YMQSVARCLQ 200 (448)
Q Consensus 131 ~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~------L~~~~~~----~~~~~~~~l~ 200 (448)
|..-.+.++.|..++++.|...|..++..+....+.-. -..|.+.+... +..+... ........+.
T Consensus 43 P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v----~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly 118 (187)
T PF12830_consen 43 PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV----ESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLY 118 (187)
T ss_pred hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHH
Confidence 44555667888888899999999999999976543111 12333333321 1111111 0334566677
Q ss_pred Hhhc-cchhhHHHH
Q psy4828 201 MMLR-IDEYRIAFI 213 (448)
Q Consensus 201 ~lL~-~~~~R~~f~ 213 (448)
.+++ .+.+|+.|.
T Consensus 119 ~ll~~~r~~R~~Fl 132 (187)
T PF12830_consen 119 SLLRSNRKSRRKFL 132 (187)
T ss_pred HHHhcccHhHHHHH
Confidence 7777 778888875
No 139
>KOG1242|consensus
Probab=40.39 E-value=5.6e+02 Score=28.55 Aligned_cols=176 Identities=17% Similarity=0.184 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhh---------hcccCCCchhHHHHHHHHHHh------
Q psy4828 231 FQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEK---------NLIEKPTEPALAKENCIAMVQ------ 295 (448)
Q Consensus 231 ~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEK---------NLl~~~~~~~~~~~~~~~mv~------ 295 (448)
-|.-=.++..+=.|.|.....-.+.-.++||.+.+++-++-+|= .+-+.-..+++. .....+++
T Consensus 268 WrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~-~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ-KIIPTLLDALADPS 346 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHhcCcc
Confidence 34444666666678887765555555689999999997775443 111111111111 12333443
Q ss_pred cchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHH
Q psy4828 296 SKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELL 375 (448)
Q Consensus 296 ~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~ll 375 (448)
|..+..+..|....|--+=-.-++.-+-..|...+.+=+ ++.|+-.-==-+|.-++-++--.+-
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs----------------t~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS----------------TSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc----------------chhhhhHHHHHHHHHHhhcCHHHHh
Confidence 235566666666655422222455555555555544411 1122211112246666665555555
Q ss_pred HHHHHhh-------ccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCC
Q psy4828 376 KSLIHLL-------ETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHE 428 (448)
Q Consensus 376 k~L~~lL-------~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~ 428 (448)
+-|-+|+ .+. +|.+=+||.+++|..++. .|..-.. +....+|+..+.+
T Consensus 411 pfl~~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~--~g~~~f~--d~~p~l~e~~~~~ 465 (569)
T KOG1242|consen 411 PFLPSLLPGLKENLDDA-VPEVRAVAARALGALLER--LGEVSFD--DLIPELSETLTSE 465 (569)
T ss_pred hhHHHHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHH--HHhhccc--ccccHHHHhhccc
Confidence 5554444 444 899999999999999984 4444442 3346777777544
No 140
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=40.36 E-value=9.1 Score=29.81 Aligned_cols=26 Identities=19% Similarity=0.685 Sum_probs=23.3
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHHH
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQL 420 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~~ 420 (448)
.+|+..|+..||.|+.++....|++.
T Consensus 24 VYDvt~~~~~hpgg~~~~~~~aG~D~ 49 (76)
T PF00173_consen 24 VYDVTDFLDRHPGGADILKKYAGRDA 49 (76)
T ss_dssp EEECTTTTTTSTTTSHHHHTTTTSBT
T ss_pred EcccccccccccchhHHHHHhccccc
Confidence 47999999999999999999988763
No 141
>PF03778 DUF321: Protein of unknown function (DUF321) ; InterPro: IPR005529 This entry represents a group of tandem repeats, found in Arabidopsis species, whose sequence is distantly related to the FARP (FMRFamide) group of neuropeptides (IPR002544 from INTERPRO). The function of these repeats is not known, being mostly found in uncharacterised proetins, but they are also present in the nuclear migration protein NUM1 [].
Probab=39.59 E-value=7.2 Score=23.59 Aligned_cols=8 Identities=63% Similarity=1.348 Sum_probs=6.4
Q ss_pred hHHHhchh
Q psy4828 358 QFWRENAP 365 (448)
Q Consensus 358 ~FW~EN~~ 365 (448)
.||+||-.
T Consensus 2 rFwreN~g 9 (20)
T PF03778_consen 2 RFWRENHG 9 (20)
T ss_pred ccceeecC
Confidence 49999964
No 142
>KOG1060|consensus
Probab=39.09 E-value=2.7e+02 Score=32.25 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHH-HHHHHhhhcC--------------------------CCch
Q psy4828 82 RGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRV-EIFKEYSQTK--------------------------REPV 134 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~-~~f~~~~~~~--------------------------~~~~ 134 (448)
.+.|...++.+|++ ++.-|+--..+.|--|++.+|.+- +++..+++.. -++.
T Consensus 427 ~~tCL~gLv~Llss-hde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDV 505 (968)
T KOG1060|consen 427 TDTCLNGLVQLLSS-HDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDV 505 (968)
T ss_pred hhHHHHHHHHHHhc-ccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHH
Confidence 36788999999998 677777777778889998888333 3333333221 1133
Q ss_pred hHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChh-HHHHHHHHHHhhccch-----h
Q psy4828 135 CSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDY-MQSVARCLQMMLRIDE-----Y 208 (448)
Q Consensus 135 ~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~-~~~~~~~l~~lL~~~~-----~ 208 (448)
-....+-+..+..-+..+.+.+-++|+.... ++.+.++.+..+.-+- +.+| ++.-.|.++.++...+ -
T Consensus 506 LR~laksFs~E~~evKlQILnL~aKLyl~~~-----~~~kll~~Yv~~L~~y-D~sYDiRDRaRF~r~l~~~~~~Ls~h~ 579 (968)
T KOG1060|consen 506 LRKLAKSFSDEGDEVKLQILNLSAKLYLTNI-----DQTKLLVQYVFELARY-DLSYDIRDRARFLRQLISPLEALSKHA 579 (968)
T ss_pred HHHHHHhhccccchhhHHHHHhhhhheEech-----hhHHHHHHHHHHHhcc-CCCcchhHHHHHHHHHhccHHHHHHHH
Confidence 3333444455667777778888888765442 3355555555543322 3333 4556677776665554 4
Q ss_pred hHHHHhhcchhhHHHhhcc
Q psy4828 209 RIAFINVDGIRTLLSVLSG 227 (448)
Q Consensus 209 R~~f~~~~gv~~L~~lL~~ 227 (448)
|+.|....+-+.+...+.+
T Consensus 580 ~ei~l~~Kpa~~~es~f~~ 598 (968)
T KOG1060|consen 580 REIFLASKPAPVLESSFKD 598 (968)
T ss_pred HHHhhccCCCccCcccccC
Confidence 6677766655544444444
No 143
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=38.01 E-value=5.3e+02 Score=27.60 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhhc--c---CCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHH--HHH---hhhcCCChhHHHHHHHHH
Q psy4828 371 NYELLKSLIHLLE--T---SRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQ--LVM---QLLSHEDPNVRYEALLAV 440 (448)
Q Consensus 371 ~~~llk~L~~lL~--~---S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~--~vM---~Lm~h~d~eVr~eAL~av 440 (448)
.+..++.|.++|. + .+|+.++-=|.+=++.++-.++ ++-+..+..-. .+. .-|.++++-|-||-+.++
T Consensus 248 g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~--~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i 325 (464)
T PF11864_consen 248 GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSG--EQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLI 325 (464)
T ss_pred HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccc--cCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHH
Confidence 4899999999992 2 1344445445555666666542 22222221111 222 233688999999999999
Q ss_pred HHHh
Q psy4828 441 QKLM 444 (448)
Q Consensus 441 Qklm 444 (448)
+.++
T Consensus 326 ~~ll 329 (464)
T PF11864_consen 326 NRLL 329 (464)
T ss_pred HHHH
Confidence 9987
No 144
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=37.58 E-value=5.1e+02 Score=27.20 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=26.9
Q ss_pred cCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHh
Q psy4828 143 NGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL 184 (448)
Q Consensus 143 ~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L 184 (448)
+.+++++...++++++.|+-. ..+++.++.+++.+.+..
T Consensus 200 ~~~~~~~~~~~~~~la~LvNK---~~~~~~l~~~l~~~~~~~ 238 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVNK---WPDDDDLDEFLDSLLQSI 238 (415)
T ss_pred cCCChHHHHHHHHHHHHHHcC---CCChhhHHHHHHHHHhhh
Confidence 345688888899999988843 224456777777776555
No 145
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=36.69 E-value=4.4e+02 Score=26.24 Aligned_cols=161 Identities=12% Similarity=0.083 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhh----cCCCchhHHHHhhhcCCchhHHHHHHHHHH
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQ----TKREPVCSQFLNLLNGSDGFIINMTAKIIA 158 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~----~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt 158 (448)
..+..+|++.+ +..++.+.--++..|.|++.-.+ .+.|..... .....-...|.+.|.+.++-++..|..-++
T Consensus 63 ~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g--~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 63 KEHLPLFLQAL-QKDDEEVKITALKALFDLLLTHG--IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcC--chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q ss_pred HHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHH
Q psy4828 159 KIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLI 238 (448)
Q Consensus 159 ~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~l 238 (448)
+|+-.|.-....+.+..++-.--+--...+....|+..-++.........++.......++++..+.....+..--+..+
T Consensus 140 KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v 219 (298)
T PF12719_consen 140 KLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMV 219 (298)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhC
Q ss_pred HHHHHhhc
Q psy4828 239 FCLWVLTF 246 (448)
Q Consensus 239 l~lWlLSF 246 (448)
-+.++..|
T Consensus 220 ~~~~v~~~ 227 (298)
T PF12719_consen 220 SPSQVASF 227 (298)
T ss_pred CHHHHHHH
No 146
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=36.24 E-value=3.1e+02 Score=30.79 Aligned_cols=70 Identities=20% Similarity=0.331 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhcccChhhHH-HHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHH-HHhhhcCCchhHHHHHHHHHHHH
Q psy4828 83 GHAAKTFLNLLEHISKDSTI-QYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQ-FLNLLNGSDGFIINMTAKIIAKI 160 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~v-qyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~-fl~lL~~~d~~I~~~a~~iLt~l 160 (448)
+....+|+++|.+. ++.++ .-+++-|+.|-..-.+|.+...+ -|.| +.+-|+..|.|+...|-.++.-|
T Consensus 596 D~lm~Lf~r~les~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~--------~fiPyl~~aln~~d~~v~~~avglvgdl 666 (858)
T COG5215 596 DQLMELFIRILEST-KPTTAFGDVYTAISALSTSLEERFEQYAS--------KFIPYLTRALNCTDRFVLNSAVGLVGDL 666 (858)
T ss_pred HHHHHHHHHHHhcc-CCchhhhHHHHHHHHHHHHHHHHHHHHHh--------hhhHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 56889999999996 44433 67778888887655555443322 1334 46777878999999999888887
Q ss_pred H
Q psy4828 161 A 161 (448)
Q Consensus 161 ~ 161 (448)
.
T Consensus 667 a 667 (858)
T COG5215 667 A 667 (858)
T ss_pred H
Confidence 6
No 147
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=36.06 E-value=1.5e+02 Score=26.70 Aligned_cols=65 Identities=3% Similarity=-0.069 Sum_probs=41.9
Q ss_pred HHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHh
Q psy4828 109 IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQL 184 (448)
Q Consensus 109 i~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L 184 (448)
|+|++..++.... +....+.+-|++.++-++..|+.+|-.++.....++..+.. ..|++-+...+
T Consensus 25 icD~In~~~~~~k-----------~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~ 90 (139)
T cd03567 25 FCEQINKEPEGPQ-----------LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLV 90 (139)
T ss_pred HHHHHHcCCccHH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHh
Confidence 4566666554332 33445777788899999999999999998754333433322 45666555555
No 148
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=35.96 E-value=2.4e+02 Score=31.96 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=61.0
Q ss_pred HHHHHHHhccc-ChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCC-chhHHHHHHHHHHHHHhc
Q psy4828 86 AKTFLNLLEHI-SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGS-DGFIINMTAKIIAKIACW 163 (448)
Q Consensus 86 ~~~~l~lL~~~-~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~-d~~I~~~a~~iLt~l~~~ 163 (448)
.+-|+..|+.. .+.+..--+|+|++.+++..|..+-.+.+. ..|..+++.|..+ +..+...|+.+|..|+-.
T Consensus 68 ~K~~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t------~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ 141 (668)
T PF04388_consen 68 DKHLFDKLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQT------PLFKSLLKCLQFDTSITVVSSALLVLIMLLPH 141 (668)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcC------hhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence 34455444443 346666778888888888888777655543 6688889999876 677888999999998843
Q ss_pred ccCCCChhhHHHHHHHHHHHh
Q psy4828 164 SVDLLNPSDLNFYLTWLKDQL 184 (448)
Q Consensus 164 ~~~~~~~~~l~~~l~~l~~~L 184 (448)
-+.. -...|..+|......+
T Consensus 142 ip~~-l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 142 IPSS-LGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccch-hhHHHHHHHHHHHHHH
Confidence 3221 2345566666555433
No 149
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.42 E-value=5.9e+02 Score=27.29 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.7
Q ss_pred cCCChhHHHHHHHHHHHH
Q psy4828 426 SHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 426 ~h~d~eVr~eAL~avQkl 443 (448)
...+++||-.||.++..|
T Consensus 447 ~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 447 RDRRSEVRIKALDVLEEI 464 (464)
T ss_pred CCCCchHHHHHHHHHhhC
Confidence 457899999999988653
No 150
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=34.98 E-value=1.5e+02 Score=30.85 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=57.2
Q ss_pred cccccccHHHHHHHHHhcCCC-CchhHHhhCCCCH---HhHHHHHHhhcCChHHHHHHHhh-chhHHHHHHHHHhcccCh
Q psy4828 24 DMIAATSVLQQQATEVRNQRP-NWNTYQQSQMISK---EDYDFITVFDTASSAKRAEMLNE-RRGHAAKTFLNLLEHISK 98 (448)
Q Consensus 24 ~~~~~~~~l~~~~~~ir~r~i-~W~~~~ra~~is~---~d~~~ik~~d~~~~~~r~~~~~~-~~~~~~~~~l~lL~~~~~ 98 (448)
++.+....+.-...-||..+. +++.|.||+++== .+.+.+..+=..-. +....+++ +|..+...|-.+++. .+
T Consensus 144 ~~~l~~~i~~tL~~gi~~~p~~~~~PfLrAalvfce~s~~~~~v~~li~~Va-~~~~sl~~~~G~~fL~Ff~~ll~~-~n 221 (337)
T PF12030_consen 144 DAGLQDSIFKTLEEGIRGQPAQLCDPFLRAALVFCERSPDADRVQDLIRHVA-KQVRSLQNAEGRAFLDFFRGLLNL-RN 221 (337)
T ss_pred ccchHHHHHHHHHcccccCchhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHhcccccCCcHhHHHHHHHHHhC-cC
Confidence 344455566666677777775 5888888865511 11111111111000 11122333 234455555555533 23
Q ss_pred hhHHHHHHHHHHHHHhhchh-HHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 99 DSTIQYILVLIDDILQEDRS-RVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 99 ~d~vqyvL~li~dll~~~~~-~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
+.. ..++. ......+ ...-|.| .||..+|.-|..-+-.+|..++-
T Consensus 222 ~~~------------~~~~~~~~~~~le-----~ip~WAP--~LL~y~d~~VR~~Te~fL~~~lF 267 (337)
T PF12030_consen 222 ERI------------GEDRAWFLSLVLE-----RIPDWAP--GLLGYPDRSVRNGTEDFLQELLF 267 (337)
T ss_pred ccc------------cccHHHHHHHHHH-----cccccch--HhhCCCchhHHHHHHHHHHHHhC
Confidence 221 11111 1111122 1133555 35777899999999999988764
No 151
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=34.74 E-value=2.1e+02 Score=24.70 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=52.0
Q ss_pred CCCCC---hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhcc
Q psy4828 308 RKFDD---EDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLET 384 (448)
Q Consensus 308 rk~~D---edl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~ 384 (448)
+++.+ +++..|++.|.+.+++-++.-+++ =.+-+.++..+-..+||..-+=|..
T Consensus 3 ~~~~~~~~~~l~~el~~L~d~lEevL~ssg~~-----------------------a~~e~~~lR~r~~~~Lk~~r~rl~~ 59 (104)
T COG4575 3 REFTDDAIDQLLAELQELLDTLEEVLKSSGSL-----------------------AGDEAEELRSKAESALKEARDRLGD 59 (104)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcccc-----------------------hhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666 789999999999999988874433 2233344445667788888777754
Q ss_pred CCChhHHHHHHhhHh---hHhhhCc-chhHHHH
Q psy4828 385 SRDPLVLSVASYDIG---EYVRHCP-RGKHVIE 413 (448)
Q Consensus 385 S~D~~vlaVAc~DIg---e~vr~~p-~gr~il~ 413 (448)
-.|. +..=+++-++ +||+.+| .|..|-.
T Consensus 60 ~~d~-v~~~sk~a~~~tD~yV~e~PWq~VGvaA 91 (104)
T COG4575 60 TGDA-VVQRSKAAADATDDYVRENPWQGVGVAA 91 (104)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 3343 2222333222 7999999 5555543
No 152
>KOG2122|consensus
Probab=34.55 E-value=3.5e+02 Score=33.77 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=62.8
Q ss_pred HHHHH-HhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcCh-hHHHhhhcCCCHHHHHHHhhhhhhh
Q psy4828 196 ARCLQ-MMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNP-KLADRMNKFNVIPTLADILSDSVKE 273 (448)
Q Consensus 196 ~~~l~-~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~iI~~L~~ilk~~~KE 273 (448)
++-++ .++..+.||++.-.++.+.+|++.|.. .++-+--++|-.+|=||=-. +--+.+-..|.||.|-.++...-|-
T Consensus 509 LRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkM 587 (2195)
T KOG2122|consen 509 LRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKM 587 (2195)
T ss_pred HHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhh
Confidence 34444 467788999999999999999998853 13333448999999998654 4444446779999999998665333
Q ss_pred h---------hcccCCCc
Q psy4828 274 K---------NLIEKPTE 282 (448)
Q Consensus 274 K---------NLl~~~~~ 282 (448)
- ||++..+.
T Consensus 588 Ia~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 588 IAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hhhhHHHHHHHHhcCCch
Confidence 2 99988865
No 153
>KOG2038|consensus
Probab=34.19 E-value=1.7e+02 Score=33.64 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=59.0
Q ss_pred HHhhchhHHHHHHHHHhcccCh---hhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHH
Q psy4828 77 MLNERRGHAAKTFLNLLEHISK---DSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMT 153 (448)
Q Consensus 77 ~~~~~~~~~~~~~l~lL~~~~~---~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a 153 (448)
.++........-|+.+|..+++ ..|..-+|..|.+||..-|+--..++.. +++-|..++.-|...|
T Consensus 293 yfE~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~-----------lVNKlGDpqnKiaskA 361 (988)
T KOG2038|consen 293 YFEHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVL-----------LVNKLGDPQNKIASKA 361 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHH-----------HHHhcCCcchhhhhhH
Confidence 3444444444456777777766 5577889999999999988766655553 6677788888999999
Q ss_pred HHHHHHHHhccc
Q psy4828 154 AKIIAKIACWSV 165 (448)
Q Consensus 154 ~~iLt~l~~~~~ 165 (448)
++.|..|.+..|
T Consensus 362 sylL~~L~~~HP 373 (988)
T KOG2038|consen 362 SYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHhhCC
Confidence 999999999876
No 154
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=34.07 E-value=3.1e+02 Score=30.53 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHH
Q psy4828 99 DSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLT 178 (448)
Q Consensus 99 ~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~ 178 (448)
..+-+.+-.+|.-.....|+..+ ..+...++|..-+|.-|+..|.+-|-.+..+ +.+.+.+..+
T Consensus 36 ~k~K~Laaq~I~kffk~FP~l~~-----------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~-----~~~~v~kvaD 99 (556)
T PF05918_consen 36 PKEKRLAAQFIPKFFKHFPDLQE-----------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKD-----NPEHVSKVAD 99 (556)
T ss_dssp HHHHHHHHHHHHHHHCC-GGGHH-----------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-------T-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhChhhHH-----------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHh-----HHHHHhHHHH
Confidence 44555555566665555554443 4455567777777777777777766654321 2355667777
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHhhcc
Q psy4828 179 WLKDQLKLANNDYMQSVARCLQMMLRI 205 (448)
Q Consensus 179 ~l~~~L~~~~~~~~~~~~~~l~~lL~~ 205 (448)
.|...|++.++..+..+-.+|..+++.
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 777666543333333444555555544
No 155
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=33.63 E-value=3.6e+02 Score=24.35 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=69.6
Q ss_pred HHHHHhcc-cChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhh-cCCchhHHHHHHHHHHHHHhccc
Q psy4828 88 TFLNLLEH-ISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLL-NGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 88 ~~l~lL~~-~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL-~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
+++.-|.. ...+++...++.++.-++... +.. |.+ -+..|+..+ ...+.--...++.+++.|+.--+
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~--~~~-~~~--------~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~ 75 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAA--REE-FKE--------KISDFIESLLDEGEMDSLIIAFSALTALFPGPP 75 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHH--HHH-HHH--------HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHh--HHH-HHH--------HHHHHHHHHHccccchhHHHHHHHHHHHhCCCH
Confidence 44444443 344667777777777776222 222 222 122333333 32222234447778888764322
Q ss_pred C----CCChhhHHHHHHHHHHHhh--hcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCc-chHHHHHHH
Q psy4828 166 D----LLNPSDLNFYLTWLKDQLK--LANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV-NFQIQYQLI 238 (448)
Q Consensus 166 ~----~~~~~~l~~~l~~l~~~L~--~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~-~~Ql~Y~~l 238 (448)
+ -+.. +.+++.+..... +.+......++.++......+.-|. |...+|++.|-+++.++. ..++...++
T Consensus 76 dv~~~l~~~---eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~-~I~~~~~~~L~~~~~~~~~~~~ir~~A~ 151 (157)
T PF11701_consen 76 DVGSELFLS---EGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRT-FISKNYVSWLKELYKNSKDDSEIRVLAA 151 (157)
T ss_dssp HHHHHHCCT---TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHH-CCHHHCHHHHHHHTTTCC-HH-CHHHHH
T ss_pred HHHHHHHhh---hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHH-HHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 1 0112 345555655554 3333444456788887666655555 566778888888875333 222333554
Q ss_pred HH
Q psy4828 239 FC 240 (448)
Q Consensus 239 l~ 240 (448)
++
T Consensus 152 v~ 153 (157)
T PF11701_consen 152 VG 153 (157)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 156
>KOG0212|consensus
Probab=33.05 E-value=7.4e+02 Score=27.79 Aligned_cols=102 Identities=15% Similarity=0.217 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHH
Q psy4828 97 SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFY 176 (448)
Q Consensus 97 ~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~ 176 (448)
...++.-.+|.-|--+....|.-.--+ ..+-|..+++.|..++.-+..+++.+++.+....+.+ .+.+|
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h-------~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~----~~~~f 416 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVH-------NDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP----NLRKF 416 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhh-------ccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc----cHHHH
Confidence 345555555555555555444333211 2366888899998888999999999999998765432 34455
Q ss_pred HHHHHHHhhhcCChhH----HHHHHHHHHhhccchhhH
Q psy4828 177 LTWLKDQLKLANNDYM----QSVARCLQMMLRIDEYRI 210 (448)
Q Consensus 177 l~~l~~~L~~~~~~~~----~~~~~~l~~lL~~~~~R~ 210 (448)
+..|-+..+. ++-.+ ..+++-++.+|.-+..-+
T Consensus 417 l~sLL~~f~e-~~~~l~~Rg~lIIRqlC~lL~aE~IYr 453 (675)
T KOG0212|consen 417 LLSLLEMFKE-DTKLLEVRGNLIIRQLCLLLNAERIYR 453 (675)
T ss_pred HHHHHHHHhh-hhHHHHhhhhHHHHHHHHHhCHHHHHH
Confidence 4444443322 11111 125666666665544333
No 157
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.82 E-value=1.6e+02 Score=26.36 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=35.4
Q ss_pred chhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHhh
Q psy4828 133 PVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQLK 185 (448)
Q Consensus 133 ~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L~ 185 (448)
+....+-+-|.+.++-++..|+.+|..++.....++..+.. ..|++-+...++
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~ 94 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIK 94 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHc
Confidence 44555677788889999999999999998654333322221 566666665554
No 158
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=32.13 E-value=1.5e+02 Score=30.91 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
=+.++.++++|..-.+.-.++-++.=|..+++..|+-.+.+.++ .+-...+.+++|+|+-|..-|+..+..++.
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky------g~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY------GVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh------hhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 35677888888875555466777878888889999988888887 445668999999999999999888887764
No 159
>TIGR02829 spore_III_AE stage III sporulation protein AE. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is found in a spore formation operon and is designated stage III sporulation protein AE.
Probab=31.91 E-value=1.3e+02 Score=31.80 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=21.6
Q ss_pred chHHHHHHHHhhCCcccCCCCCChhHH
Q psy4828 334 SSFDEYKTEVKSGRLEWSPVHRSAQFW 360 (448)
Q Consensus 334 TsfDeY~~El~SG~L~WSP~H~se~FW 360 (448)
.+|.++..++.+|...+||-+--+.+|
T Consensus 60 ~~~~~~~~~~~~G~~~~s~~~i~~~l~ 86 (381)
T TIGR02829 60 ESQKYSLMEFLRGEKPFSVKKIGEALL 86 (381)
T ss_pred ccHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 699999999999999999965333333
No 160
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=31.26 E-value=76 Score=26.69 Aligned_cols=51 Identities=20% Similarity=0.198 Sum_probs=35.2
Q ss_pred Cchh-HHhhCCCCHHhHHHHHHhhcCChHHH--HHHHhhchhHHHHHHHHHhcc
Q psy4828 45 NWNT-YQQSQMISKEDYDFITVFDTASSAKR--AEMLNERRGHAAKTFLNLLEH 95 (448)
Q Consensus 45 ~W~~-~~ra~~is~~d~~~ik~~d~~~~~~r--~~~~~~~~~~~~~~~l~lL~~ 95 (448)
+|.. +...|+||+++.+.|++........+ ..++...|+.....|.+.|..
T Consensus 25 ~v~~~L~~~gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e 78 (94)
T cd08327 25 LVIQYLYQEGILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEE 78 (94)
T ss_pred HHHHHHHhCCCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHH
Confidence 3766 66788999999999998443222111 146777777777888877753
No 161
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=30.62 E-value=1.8e+02 Score=23.97 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCCchhHHhhCCCCHHhHHHHHHhhcCChHHHH-HH----Hhhchh-HHHHHHHHHhcccChhhHHHHH
Q psy4828 43 RPNWNTYQQSQMISKEDYDFITVFDTASSAKRA-EM----LNERRG-HAAKTFLNLLEHISKDSTIQYI 105 (448)
Q Consensus 43 ~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~-~~----~~~~~~-~~~~~~l~lL~~~~~~d~vqyv 105 (448)
...|..++|.=.+|+.|...|+.=..-+..++. ++ .+..|. .-...++..|.++.+.|+|.++
T Consensus 15 G~dW~~Lar~L~vs~~dI~~I~~e~p~~l~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~~~ 83 (84)
T cd08805 15 GLSWAELARELQFSVEDINRIRVENPNSLLEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVNML 83 (84)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHHhh
Confidence 468999999999999999999985444333333 33 233333 4556899999999999998654
No 162
>KOG1824|consensus
Probab=30.55 E-value=1e+03 Score=28.57 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 369 EKNYELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 369 e~~~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+++..+..+|+.=+.++ ++..+..-|.--+||+=|+.+.+ -..+-+..|.+-.+|+++|||.-|-.|+..+-+
T Consensus 813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 34456666666665443 34456667778899997765543 234567899999999999999999999987755
No 163
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=30.40 E-value=2.8e+02 Score=22.30 Aligned_cols=72 Identities=17% Similarity=0.281 Sum_probs=52.5
Q ss_pred cHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCCh-HHHHHHH----hhch-hHHHHHHHHHhcccChhhHHH
Q psy4828 30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASS-AKRAEML----NERR-GHAAKTFLNLLEHISKDSTIQ 103 (448)
Q Consensus 30 ~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~-~~r~~~~----~~~~-~~~~~~~l~lL~~~~~~d~vq 103 (448)
.+|...++.+ ...|..++|.=-+|+.|...|+.=...+. ++..+++ +.+| ..-...++..|..+.+.|++.
T Consensus 5 ~~l~~ia~~l---G~dW~~LAr~Lg~~~~dI~~i~~~~~~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~ 81 (84)
T cd08317 5 IRLADISNLL---GSDWPQLARELGVSETDIDLIKAENPNSLAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVE 81 (84)
T ss_pred chHHHHHHHH---hhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHH
Confidence 4677788887 47899999999999999999997444333 2333443 2233 245678899999999999876
Q ss_pred H
Q psy4828 104 Y 104 (448)
Q Consensus 104 y 104 (448)
.
T Consensus 82 ~ 82 (84)
T cd08317 82 K 82 (84)
T ss_pred H
Confidence 4
No 164
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=29.88 E-value=1.6e+02 Score=33.73 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHH--HHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhch---hhhh--hhh--HHHHHHHHHh
Q psy4828 311 DDEDIVEDVQFLNEK--LQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENA---PRLH--EKN--YELLKSLIHL 381 (448)
Q Consensus 311 ~Dedl~edl~~L~e~--L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~---~kf~--e~~--~~llk~L~~l 381 (448)
+.+|+.+.+.|++|. |--+-.-|+.|-..+.|+=|.+=+.| ++.-=..-. .||- -++ -+-+..|+..
T Consensus 866 sEddf~da~~fikE~ElLyGeksvLs~F~pvVeE~csn~~~~s----d~~lq~aA~l~L~klMClS~~fc~ehlpllIt~ 941 (1128)
T COG5098 866 SEDDFVDAFFFIKEKELLYGEKSVLSNFKPVVEEGCSNSSRFS----DEELQVAAYLSLYKLMCLSFEFCSEHLPLLITS 941 (1128)
T ss_pred CHHHHHHHHHHHHHHHHhhchhHHHhhhhHHHHHHhccccccC----CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 377999999999864 33334458999999999988544433 222211111 1110 011 2456778999
Q ss_pred hccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 382 LETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 382 L~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
++++.+|++-+-|.--+|-|.--|..--... -.-+.+=+..+|.+||+.++.++--|+.
T Consensus 942 mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLil 1000 (1128)
T COG5098 942 MEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLIL 1000 (1128)
T ss_pred HhhCCCcceeccceeeccccceehhhhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 9889999988877777777654444332222 2345566678999999999999876654
No 165
>KOG1824|consensus
Probab=29.05 E-value=1.9e+02 Score=34.24 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=56.4
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhh-cCChhHHHHHHHHHHhhccchhhHHHHh
Q psy4828 136 SQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKL-ANNDYMQSVARCLQMMLRIDEYRIAFIN 214 (448)
Q Consensus 136 ~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~-~~~~~~~~~~~~l~~lL~~~~~R~~f~~ 214 (448)
.-++..|.++-.-|.-+|...|+-+...++ .+...+++..|-.-|.. ..+..+.+-++||..++|...+|.-=+-
T Consensus 177 ~~l~~ql~s~R~aVrKkai~~l~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~ 252 (1233)
T KOG1824|consen 177 KCLLPQLQSPRLAVRKKAITALGHLASSCN----RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHL 252 (1233)
T ss_pred HHHhhcccChHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhccc
Confidence 345778888899999999999999988775 23334444444433432 2344566779999999999999975443
Q ss_pred hcchhhHHH
Q psy4828 215 VDGIRTLLS 223 (448)
Q Consensus 215 ~~gv~~L~~ 223 (448)
...++.+.+
T Consensus 253 ~~ivp~v~~ 261 (1233)
T KOG1824|consen 253 DKIVPLVAD 261 (1233)
T ss_pred chhhHHHHH
Confidence 333444333
No 166
>KOG0537|consensus
Probab=28.99 E-value=29 Score=30.70 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=23.0
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ 419 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~ 419 (448)
.||+..|...||.|-.+|....||+
T Consensus 29 VYDvT~Fl~eHPGG~~vLl~~AGkD 53 (124)
T KOG0537|consen 29 VYDVTSFLDEHPGGEDVLLEYAGKD 53 (124)
T ss_pred EEeccchhhhCCChHHHHHHHhchh
Confidence 5899999999999999999888887
No 167
>KOG1059|consensus
Probab=28.57 E-value=9.2e+02 Score=27.91 Aligned_cols=134 Identities=11% Similarity=0.225 Sum_probs=76.5
Q ss_pred HHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC
Q psy4828 89 FLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL 168 (448)
Q Consensus 89 ~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~ 168 (448)
.+.||++ +++=+.+=...++.-++.-.|+... .-|+-|..-|.-+|+-|+..|-.++--|+...|...
T Consensus 149 v~tLL~s-skpYvRKkAIl~lykvFLkYPeAlr-----------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 149 VFTLLNS-SKPYVRKKAILLLYKVFLKYPEALR-----------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred HHHHHhc-CchHHHHHHHHHHHHHHHhhhHhHh-----------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 4466666 5555443333333333333343332 335566777788899999999999999987765322
Q ss_pred ChhhHHHHHHHHHHHhhhcCChhHHH-HHHHHHHhhccc-hhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHh
Q psy4828 169 NPSDLNFYLTWLKDQLKLANNDYMQS-VARCLQMMLRID-EYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVL 244 (448)
Q Consensus 169 ~~~~l~~~l~~l~~~L~~~~~~~~~~-~~~~l~~lL~~~-~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlL 244 (448)
-.-.+-||..+ ..++|+++-+ ++..+..|.-.+ ..++ ..+++|.+++.+++.--+.|+++-|+=--
T Consensus 217 -L~LAP~ffkll----ttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 217 -LQLAPLFYKLL----VTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred -ccccHHHHHHH----hccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 11113444433 3445666522 234444433332 1222 13567777777778888999988876544
No 168
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=28.47 E-value=77 Score=26.23 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=35.0
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCC-hHHHH----HHHhhchhHHHHHHHHHhc
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTAS-SAKRA----EMLNERRGHAAKTFLNLLE 94 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~-~~~r~----~~~~~~~~~~~~~~l~lL~ 94 (448)
=|+.+...|.+|++|.+-|+.-.... ...|. .++...|+.....|++.|.
T Consensus 21 l~d~L~q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~~Af~~F~~aL~ 75 (86)
T cd08785 21 LTPYLRQCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGKRGYVAFLESLE 75 (86)
T ss_pred HHHHHHhcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 38889999999999999999844422 11222 4666777666666777664
No 169
>KOG1566|consensus
Probab=28.21 E-value=6.9e+02 Score=25.92 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=68.3
Q ss_pred HHhHHHHHHhhcCChHHHHHHHhhchhHH-HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchh
Q psy4828 57 KEDYDFITVFDTASSAKRAEMLNERRGHA-AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVC 135 (448)
Q Consensus 57 ~~d~~~ik~~d~~~~~~r~~~~~~~~~~~-~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~ 135 (448)
.+-.+-+|.+-..-+..-.+++..+.+.. .+..=.||++ .+--|-+..+.++.+++.+-|.... ..++.. ....+
T Consensus 184 sdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s-~Nyvtkrqs~kllg~llldr~N~~~-M~kYis--s~enL 259 (342)
T KOG1566|consen 184 SDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRS-ENYVTKRQSLKLLGELLLDRSNSAV-MTKYIS--SPENL 259 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcc-cceehHHHHHHhHHHHHhCCCcHHH-HHHHhc--CHHHH
Confidence 34444444444333334456776665443 3334456665 7777889999999999999875543 233211 23668
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 136 SQFLNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 136 ~~fl~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
.....+|..+..-||..|+++.-...+.
T Consensus 260 KlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 260 KLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 8899999999999999999998876643
No 170
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.83 E-value=1.7e+02 Score=25.76 Aligned_cols=55 Identities=24% Similarity=0.428 Sum_probs=35.1
Q ss_pred hhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 367 LHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 367 f~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
..+.||+.+-.+++.+..+.+.. |..+ ..|..-|.|+||.|...||.-+.-+|-|
T Consensus 13 l~~~dw~~~l~icD~i~~~~~~~-------------------k~a~------r~l~krl~~~n~~v~l~AL~lLe~~vkN 67 (133)
T smart00288 13 LLEEDWELILEICDLINSTPDGP-------------------KDAV------RLLKKRLNNKNPHVALLALTLLDACVKN 67 (133)
T ss_pred CCCcCHHHHHHHHHHHhCCCccH-------------------HHHH------HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677888888888884332211 1111 1244455689999999999888777654
No 171
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=27.70 E-value=79 Score=24.32 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=24.0
Q ss_pred hhHHhhCCCCHHhHHHHHHhhcCChHHHHHHHhhch
Q psy4828 47 NTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERR 82 (448)
Q Consensus 47 ~~~~ra~~is~~d~~~ik~~d~~~~~~r~~~~~~~~ 82 (448)
+.|+.+|.||.++++.|+..- ++|.+....+|
T Consensus 25 dk~Ve~G~iTqeqAd~ik~~i----d~~~~~~~qnG 56 (59)
T PF10925_consen 25 DKYVEAGVITQEQADAIKKHI----DQRQEYMQQNG 56 (59)
T ss_pred HHHHHcCCCCHHHHHHHHHHH----HHHHHHHHHcC
Confidence 679999999999999998743 34555555554
No 172
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=27.62 E-value=3.8e+02 Score=23.98 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=49.3
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHH---HHHhhhc-CCChhHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQ---LVMQLLS-HEDPNVRYEALLAVQK 442 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~---~vM~Lm~-h~d~eVr~eAL~avQk 442 (448)
-+.+|.|.+=| .+.||.++--|..=+-.+|+.. |...-....-|. .+..+.+ +.+++||..+|..+|.
T Consensus 40 k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 111 (142)
T cd03569 40 KYAMRALKKRL-LSKNPNVQLYALLLLESCVKNC--GTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 57888998888 5788888887877778888853 554444444333 5555554 6889999999988875
No 173
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.16 E-value=3.2e+02 Score=23.52 Aligned_cols=74 Identities=19% Similarity=0.206 Sum_probs=46.2
Q ss_pred HHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhh---------cchhhHHHhhccCcchHHHHH-----HHHHHHHhhc
Q psy4828 181 KDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINV---------DGIRTLLSVLSGRVNFQIQYQ-----LIFCLWVLTF 246 (448)
Q Consensus 181 ~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~---------~gv~~L~~lL~~~~~~Ql~Y~-----~ll~lWlLSF 246 (448)
.+||..++++.+..|++.|.+....+.+-..+... .|.+.++..++...|++.+-. --+=-|.-+|
T Consensus 14 v~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v~~El~~W~~~~ 93 (115)
T PF14663_consen 14 VTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYVEKELDKWFESF 93 (115)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHHHHHHHHHHHcc
Confidence 34554334455666777777777777665555543 255666777887778776553 2344688888
Q ss_pred ChhHHHhh
Q psy4828 247 NPKLADRM 254 (448)
Q Consensus 247 ~~~~~~~l 254 (448)
|.+.+..+
T Consensus 94 N~~YV~~v 101 (115)
T PF14663_consen 94 NKEYVKLV 101 (115)
T ss_pred cHHHHHHH
Confidence 87765544
No 174
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=27.14 E-value=1.3e+02 Score=24.77 Aligned_cols=52 Identities=10% Similarity=0.274 Sum_probs=36.3
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCChH--HHHHHHhhchhHHHHHHHHHhcccC
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTASSA--KRAEMLNERRGHAAKTFLNLLEHIS 97 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~~~--~r~~~~~~~~~~~~~~~l~lL~~~~ 97 (448)
=|+.+...|.+|.+|.+-|+........ .-..++. .|+.....|++.|....
T Consensus 21 l~d~L~s~~ILt~~d~EeI~~~~t~~~qa~~LLdiL~-rGp~Af~~F~esL~~~~ 74 (84)
T cd08810 21 HFDYLRSKRILTRDDCEEISCRTTSRKQAGKLLDILA-ENPKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHcCCCCHHHHHHHhccCCcHHHHHHHHHHHh-hCchHHHHHHHHHHHcc
Confidence 4888889999999999999994432211 1124666 77777777787776643
No 175
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=27.03 E-value=3e+02 Score=24.21 Aligned_cols=67 Identities=10% Similarity=0.069 Sum_probs=41.8
Q ss_pred HHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHhhh
Q psy4828 109 IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQLKL 186 (448)
Q Consensus 109 i~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L~~ 186 (448)
|+|++..++.-.. +....+-+-|++.++-++..|+.+|-.++.....++..+.. ..|++-|...++.
T Consensus 24 icD~i~~~~~~~k-----------~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~ 91 (133)
T smart00288 24 ICDLINSTPDGPK-----------DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP 91 (133)
T ss_pred HHHHHhCCCccHH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC
Confidence 4677766543333 22334667778889999999999999998654333322222 4566666655543
No 176
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.86 E-value=2.4e+02 Score=29.62 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=61.8
Q ss_pred hHHHhchhhhhhhhHHHHHHHHHhhccC---CCh--hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhH
Q psy4828 358 QFWRENAPRLHEKNYELLKSLIHLLETS---RDP--LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNV 432 (448)
Q Consensus 358 ~FW~EN~~kf~e~~~~llk~L~~lL~~S---~D~--~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eV 432 (448)
-+|-...-.-.++=-.+.|+|+.+..+. .|| ..+|++|.+-.+.+-. |+||-.+- +.++.|-..+-++-
T Consensus 250 l~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~-pe~~~~l~-----~~~~~l~~~pksn~ 323 (413)
T PRK13342 250 LYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGM-PEGRIALA-----QAVIYLALAPKSNA 323 (413)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCC-cHHHHHHH-----HHHHHHHcCCCccH
Confidence 3555554444444457889998887321 455 7889999999999997 99999984 46677888999999
Q ss_pred HHHHHHHHHHHhc
Q psy4828 433 RYEALLAVQKLMV 445 (448)
Q Consensus 433 r~eAL~avQklm~ 445 (448)
.|.|+....+.+-
T Consensus 324 ~~~a~~~a~~~~~ 336 (413)
T PRK13342 324 AYTAINAALADVR 336 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877764
No 177
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.67 E-value=1.4e+02 Score=30.61 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=51.7
Q ss_pred hchhhhhhhhHHHHHHHHHhhccCC--ChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHH---HHHhhhc
Q psy4828 362 ENAPRLHEKNYELLKSLIHLLETSR--DPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQ---LVMQLLS 426 (448)
Q Consensus 362 EN~~kf~e~~~~llk~L~~lL~~S~--D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~---~vM~Lm~ 426 (448)
+...+|=+.+-+++-.|++++..+. ...+.+.|..-+..++++.+.+..|+.-+||-. .+|.++.
T Consensus 254 ~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGiL~~llR 323 (329)
T PF06012_consen 254 QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGILPQLLR 323 (329)
T ss_pred HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcccHHHHHH
Confidence 4566777777889999999995432 347889999999999999999999999999843 5555543
No 178
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=26.66 E-value=1.6e+02 Score=29.95 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=45.5
Q ss_pred CCChhHHHHHHhhHhhHhhhCcchhH--HHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 385 SRDPLVLSVASYDIGEYVRHCPRGKH--VIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 385 S~D~~vlaVAc~DIge~vr~~p~gr~--il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
..++.+++-|+.--|-++-..|.++- .++. .-.++++||.++|.+||--|=.|+--|
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999887432 2322 457899999999999999998887544
No 179
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=26.31 E-value=89 Score=30.47 Aligned_cols=69 Identities=20% Similarity=0.406 Sum_probs=45.5
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhC-cHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 368 HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLG-GKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 368 ~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg-~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+++|..++|..+.... +-=|.++ +++...|.-.+..+.+. .|..|..++.++++-||-.|++-+|.++.
T Consensus 3 ~d~d~~v~K~~I~~~~-~iy~~~~--------~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCST-SIYPLVF--------RWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp T-SSHHHHHHHHHHHH-HHHHHHH--------HHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH-HHHHHHH--------HHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 4556667776666652 1112222 22233455566666554 69999999999999999999999999874
No 180
>KOG3036|consensus
Probab=26.23 E-value=6.8e+02 Score=25.23 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=79.6
Q ss_pred HHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhc
Q psy4828 108 LIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLA 187 (448)
Q Consensus 108 li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~ 187 (448)
+|.++. ..|.|...+.+++++. .+++-+-..|=+.+.++.-+.-.+++.-..-.+..+ +..
T Consensus 31 ~i~~l~-~~p~rE~aL~ELskkr--e~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l----------------~~~ 91 (293)
T KOG3036|consen 31 LILSLV-SPPTREMALLELSKKR--EPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTL----------------TPA 91 (293)
T ss_pred HHHHhh-CCchHHHHHHHHHHhc--cCCccccHHHHHhcchHHHHHHHHHhcccccCCCCC----------------Ccc
Confidence 444444 4477777788887644 444445555555666655544445443322222111 111
Q ss_pred CChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhc----cCcchHHHHHHHHHHHHhhcC--hhHHHhhhcCCCHH
Q psy4828 188 NNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS----GRVNFQIQYQLIFCLWVLTFN--PKLADRMNKFNVIP 261 (448)
Q Consensus 188 ~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~----~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~~~~iI~ 261 (448)
.+.-+=.+.-.+|-++..++-|..|.....--.|...|. ++.-=.+---++-+|=-|-=+ .++...+...+|||
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 223333466778888999999999999886555556552 222112222455555444333 24555556678888
Q ss_pred HHHHHhh
Q psy4828 262 TLADILS 268 (448)
Q Consensus 262 ~L~~ilk 268 (448)
....+.-
T Consensus 172 lCLrime 178 (293)
T KOG3036|consen 172 LCLRIME 178 (293)
T ss_pred HHHHHHh
Confidence 8877763
No 181
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=25.94 E-value=6.9e+02 Score=28.00 Aligned_cols=160 Identities=13% Similarity=0.145 Sum_probs=88.8
Q ss_pred hHHhhCCCCHHhHH-HHHHhhcCC-----hH-------------HHHHHHhhchhHHHHHHHHHhcccChhhHHH-HHHH
Q psy4828 48 TYQQSQMISKEDYD-FITVFDTAS-----SA-------------KRAEMLNERRGHAAKTFLNLLEHISKDSTIQ-YILV 107 (448)
Q Consensus 48 ~~~ra~~is~~d~~-~ik~~d~~~-----~~-------------~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vq-yvL~ 107 (448)
.+.|+|+....=++ +|+.+++.. +. -+..+++. ....++++++. +++|.+| +.+=
T Consensus 421 ~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~---~iIdvl~~~v~--sKDdaLqans~w 495 (743)
T COG5369 421 TFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEK---SIIDVLVNLVM--SKDDALQANSEW 495 (743)
T ss_pred HHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHh---hHHHHHHHHhh--cchhhhhhcchh
Confidence 46788888777777 566666510 00 11112222 24556666666 3555553 2222
Q ss_pred HHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCC--C-----ChhhHHHHHHHH
Q psy4828 108 LIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDL--L-----NPSDLNFYLTWL 180 (448)
Q Consensus 108 li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~--~-----~~~~l~~~l~~l 180 (448)
.+..++-.+.+..+ |.-+++ -|....+.+.+.++.-+|++.+.+|-.++|..... . .-...++++.+|
T Consensus 496 vlrHlmyncq~~ek-f~~Lak----ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l 570 (743)
T COG5369 496 VLRHLMYNCQKNEK-FKFLAK----IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRL 570 (743)
T ss_pred hhhhhhhcCcchhh-hhhHHh----cCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHH
Confidence 33333333332222 333322 67778899999999999999999999999966431 1 011235788888
Q ss_pred HHHhhhcCChh-HHHHHHHHHHhhccchhhHHHHhhcc
Q psy4828 181 KDQLKLANNDY-MQSVARCLQMMLRIDEYRIAFINVDG 217 (448)
Q Consensus 181 ~~~L~~~~~~~-~~~~~~~l~~lL~~~~~R~~f~~~~g 217 (448)
.+.+...++-- .+.+--.+-.++-....|..+.+++-
T Consensus 571 ~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~ 608 (743)
T COG5369 571 IDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQED 608 (743)
T ss_pred HHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHH
Confidence 88877543322 22222223334455556666665543
No 182
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.19 E-value=4.6e+02 Score=22.87 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcC---CchhHHHHHHHHHH
Q psy4828 82 RGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNG---SDGFIINMTAKIIA 158 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~---~d~~I~~~a~~iLt 158 (448)
+...++.+-+-|.+ +++.++-+.|++++-++.....+...... .......+.+++.. .+.-++.++..++.
T Consensus 35 ~k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~-----s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 35 PKEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVA-----DKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHh-----hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 34678888888887 78999999999999999887654322222 11223336666654 24556666665555
Q ss_pred HHH
Q psy4828 159 KIA 161 (448)
Q Consensus 159 ~l~ 161 (448)
...
T Consensus 109 ~W~ 111 (133)
T cd03561 109 AWS 111 (133)
T ss_pred HHH
Confidence 543
No 183
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=24.38 E-value=56 Score=24.80 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=28.8
Q ss_pred HhhHhhhCcchhHHHHHhCc------HHHHHhhhc--CCChhHHHHHHHHHH
Q psy4828 398 IGEYVRHCPRGKHVIEQLGG------KQLVMQLLS--HEDPNVRYEALLAVQ 441 (448)
Q Consensus 398 Ige~vr~~p~gr~il~~lg~------K~~vM~Lm~--h~d~eVr~eAL~avQ 441 (448)
||++|..+|+.-.+++++|. +..+=+-.. .=|++--.++|.++|
T Consensus 5 Vgeiv~~~p~~a~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L~~lq 56 (56)
T PF04405_consen 5 VGEIVAEDPRAARVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEELNALQ 56 (56)
T ss_pred HHHHHHHChHHHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHcC
Confidence 79999999999999999874 233333222 235555555555554
No 184
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=24.35 E-value=4.3e+02 Score=25.38 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=42.1
Q ss_pred HHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHh-hhcCChhHHHHHHHHHHh
Q psy4828 137 QFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL-KLANNDYMQSVARCLQMM 202 (448)
Q Consensus 137 ~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L-~~~~~~~~~~~~~~l~~l 202 (448)
+|.+.|.++|..+...|...|...+.......+..++.++-..|--.+ .+..+..++..+..++.+
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l 70 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASL 70 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 688999999999999999999999876654335666655544443322 121234444444444443
No 185
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=24.28 E-value=3.7e+02 Score=21.37 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
+..|.+.+.-..+.+ .-.|.|+=.-.+..|-...++..-++=..|=.|-.|+|++|+..|-.-+.
T Consensus 3 ~~~k~~~k~~~~~~~----~~~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~ 67 (75)
T smart00509 3 RAAKKLDKVANNGKE----VSRCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIK 67 (75)
T ss_pred HHHHHHHHHhcCCCC----HHHHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 345555555532222 22466666666668999999998775566777888999999998865544
No 186
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=24.21 E-value=4.6e+02 Score=23.53 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHH---HHHhhhcC-CChhHHHHHHHHHHH
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQ---LVMQLLSH-EDPNVRYEALLAVQK 442 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~---~vM~Lm~h-~d~eVr~eAL~avQk 442 (448)
+.+|.|.+=| .+.||.++--|..=+...|+ .-|...-....-|+ .+..+.+. .+++||...|..+|.
T Consensus 37 ~a~ral~KRl-~~~n~~v~l~AL~LLe~~vk--NCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 37 DCLKAIMKRL-NHKDPNVQLRALTLLDACAE--NCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH--HCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
No 187
>KOG2028|consensus
Probab=24.04 E-value=3.5e+02 Score=28.93 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=60.5
Q ss_pred hHHHhchhhhhhhhHHHHHHHHHhhccC---CCh--hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhH
Q psy4828 358 QFWRENAPRLHEKNYELLKSLIHLLETS---RDP--LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNV 432 (448)
Q Consensus 358 ~FW~EN~~kf~e~~~~llk~L~~lL~~S---~D~--~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eV 432 (448)
-+|.--.-.=-|+---+-|+|+.+-..- .|| .++|||||+=.+||-. |+.--++. +.+..|-.-+-+-=
T Consensus 399 lY~LaRMLegGEdPLYVARRlvR~ASEDIGlaD~S~L~~Avaa~qav~~vGm-PE~dviLA-----qC~v~lA~APKSie 472 (554)
T KOG2028|consen 399 LYWLARMLEGGEDPLYVARRLVRFASEDIGLADPSALTQAVAAYQAVHFVGM-PECDVILA-----QCVVYLARAPKSIE 472 (554)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHhhcccCcCCchhhHHHHHHHHHHHHhCC-chHHHHHH-----HHHHHHHhCcchhH
Confidence 4665322222356678889999886321 343 7999999999999987 99888774 45666777777666
Q ss_pred HHHHHHHHHHHhcc
Q psy4828 433 RYEALLAVQKLMVH 446 (448)
Q Consensus 433 r~eAL~avQklm~~ 446 (448)
-|.|..++|++|.+
T Consensus 473 vYra~~~vka~ls~ 486 (554)
T KOG2028|consen 473 VYRAYNAVKACLSN 486 (554)
T ss_pred HHHHHHHHHHHHhc
Confidence 79999999999865
No 188
>PF07166 DUF1398: Protein of unknown function (DUF1398); InterPro: IPR009833 This entry is represented by Bacteriophage DE3, Orf: ECD_10033. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Escherichia coli and Salmonella species. The function of this family is unknown.; PDB: 2HH8_A.
Probab=23.82 E-value=95 Score=27.59 Aligned_cols=34 Identities=18% Similarity=0.501 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHhh-CCccc
Q psy4828 317 EDVQFLNEKLQASVQDLSSFDEYKTEVKS-GRLEW 350 (448)
Q Consensus 317 edl~~L~e~L~~~~~~lTsfDeY~~El~S-G~L~W 350 (448)
.|...+.+.|....+--|+|.+|+.+.-+ |-.+|
T Consensus 67 ~n~~~~~~~lk~hq~Gqtdf~tfC~~~A~AGI~kW 101 (125)
T PF07166_consen 67 SNKALFKEALKRHQQGQTDFETFCKDAAKAGIFKW 101 (125)
T ss_dssp --HHHHHHHHHHHHHT---HHHHHHHHHHTT--EE
T ss_pred CCHHHHHHHHHHHHcCCccHHHHHHHHHhcCCEEE
Confidence 46677788888888888999999999988 99999
No 189
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=23.65 E-value=4.2e+02 Score=22.21 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhc---------CCChhHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLS---------HEDPNVRYEALLAVQK 442 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~---------h~d~eVr~eAL~avQk 442 (448)
-++++.|.+=|. +.+|.++--|..=|=..++ .-|.......+-+..+.+++. ..+..||..|+..+|.
T Consensus 36 ~~~~~~l~kRl~-~~~~~~~lkaL~lLe~lvk--N~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 36 KEAVDAIKKRIN-NKNPHVVLKALTLLEYCVK--NCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHH--HccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 356777777774 5577777777777777777 445555555555666666643 2478999999998886
Q ss_pred H
Q psy4828 443 L 443 (448)
Q Consensus 443 l 443 (448)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 4
No 190
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=23.43 E-value=1e+02 Score=26.77 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=34.0
Q ss_pred chhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHH
Q psy4828 363 NAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434 (448)
Q Consensus 363 N~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~ 434 (448)
+=.||-+...++=..+.++-.=++.|. .|| .+-++|+-.-++.||+|+|.+|.-
T Consensus 52 dP~KFmdSE~dLd~~Ik~l~~La~~P~--------------LYp----~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 52 DPEKFMDSEVDLDEEIKKLSVLATAPE--------------LYP----ELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred CHHHHHHhHHHHHHHHHHHHHccCChh--------------HHH----HHHHcCCHHHHHHHHCCCCcceeh
Confidence 445677776666555555432234442 222 233559999999999999998854
No 191
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=23.31 E-value=34 Score=25.92 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.5
Q ss_pred hhhCcchhHHHHHhCcH------HHHHhhhcC
Q psy4828 402 VRHCPRGKHVIEQLGGK------QLVMQLLSH 427 (448)
Q Consensus 402 vr~~p~gr~il~~lg~K------~~vM~Lm~h 427 (448)
.+|.|++|..+++-|+. +.+|+|+.+
T Consensus 11 MK~lPEak~~L~k~GIeLsme~~qP~m~L~~~ 42 (56)
T PF10815_consen 11 MKYLPEAKEELDKKGIELSMEMLQPLMQLLTK 42 (56)
T ss_pred HHHhHHHHHHHHHcCccCCHHHHHHHHHHHHH
Confidence 47889999999998874 367777654
No 192
>KOG1061|consensus
Probab=23.14 E-value=4.7e+02 Score=29.99 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=44.7
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
+..+-.++.. +++.||.+.+..+.++...+++ ...+ ..+++..-++|.+-.....=.-+.+|..++.+-+
T Consensus 162 ~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~-~~~~--------~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 162 VDALKDLLSD-SNPMVVANALAALSEIHESHPS-VNLL--------ELNPQLINKLLEALNECTEWGQIFILDCLAEYVP 231 (734)
T ss_pred hHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCC-CCcc--------cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCC
Confidence 3334455552 5667778888777777776664 1101 1222222333333222222223344555554443
Q ss_pred CCCChhhHHHHHHHHHHHhhhcCC
Q psy4828 166 DLLNPSDLNFYLTWLKDQLKLANN 189 (448)
Q Consensus 166 ~~~~~~~l~~~l~~l~~~L~~~~~ 189 (448)
. +..++..+++-+...|+..++
T Consensus 232 ~--d~~ea~~i~~r~~p~Lqh~n~ 253 (734)
T KOG1061|consen 232 K--DSREAEDICERLTPRLQHANS 253 (734)
T ss_pred C--CchhHHHHHHHhhhhhccCCc
Confidence 2 224566677767666655333
No 193
>KOG2274|consensus
Probab=23.09 E-value=5.2e+02 Score=30.49 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHh
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~ 162 (448)
+.....++++..+ +.+++.--+...++-++.-||+.+....+ .--|+..-+=+-.++|+++...+--++-.|++
T Consensus 529 p~ild~L~qlas~-~s~evl~llmE~Ls~vv~~dpef~as~~s-----kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 529 PMILDGLLQLASK-SSDEVLVLLMEALSSVVKLDPEFAASMES-----KICPLTINLFLKYSEDPQVASLAQDLFEELLQ 602 (1005)
T ss_pred hHHHHHHHHHccc-ccHHHHHHHHHHHHHHhccChhhhhhhhc-----chhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 4556667777777 67899999999999999999988874433 22444443444456899988888777766654
No 194
>PRK14700 recombination factor protein RarA; Provisional
Probab=22.75 E-value=2.5e+02 Score=28.65 Aligned_cols=83 Identities=22% Similarity=0.352 Sum_probs=59.9
Q ss_pred hhHHHhchhhhhhhhHHHHHHHHHhhcc---CCCh--hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChh
Q psy4828 357 AQFWRENAPRLHEKNYELLKSLIHLLET---SRDP--LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPN 431 (448)
Q Consensus 357 e~FW~EN~~kf~e~~~~llk~L~~lL~~---S~D~--~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~e 431 (448)
.-||..-.-.=-|+=--+.|+|+-+=.. -.|| .++|++|.+-.+++-. |+||-+|- +.++-|-..+-++
T Consensus 145 AlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~-PEa~i~La-----~aviyLA~aPKSN 218 (300)
T PRK14700 145 AIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM-PEGRLVLA-----QAAIYLAVAPKSN 218 (300)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHH-----HHHHHHHcCCCch
Confidence 4577654444444555667777766421 1344 6788899999999987 99999984 5788888999999
Q ss_pred HHHHHHHHHHHHhc
Q psy4828 432 VRYEALLAVQKLMV 445 (448)
Q Consensus 432 Vr~eAL~avQklm~ 445 (448)
=.|.|.....+.+-
T Consensus 219 s~y~A~~~A~~~v~ 232 (300)
T PRK14700 219 ACYKALAQAQQLVK 232 (300)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888777653
No 195
>KOG1242|consensus
Probab=22.64 E-value=1.1e+03 Score=26.34 Aligned_cols=163 Identities=15% Similarity=0.192 Sum_probs=97.6
Q ss_pred HHhcccChh--hHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC
Q psy4828 91 NLLEHISKD--STIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL 168 (448)
Q Consensus 91 ~lL~~~~~~--d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~ 168 (448)
++|.++... .+...++.+++-|....|.-.++... +..+-+...|....+-++..+-..+..+-.--
T Consensus 258 sll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp-------~iiP~lsevl~DT~~evr~a~~~~l~~~~svi---- 326 (569)
T KOG1242|consen 258 SLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLP-------DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI---- 326 (569)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHh-------HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh----
Confidence 666665554 67788888888888777877776555 34455667777778889999988888875432
Q ss_pred ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhh---cchhhHHHhhcc---CcchHHHHHHHHHHH
Q psy4828 169 NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINV---DGIRTLLSVLSG---RVNFQIQYQLIFCLW 242 (448)
Q Consensus 169 ~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~---~gv~~L~~lL~~---~~~~Ql~Y~~ll~lW 242 (448)
++.++..|+..|.+.+..+ +.+. ..|+..+.+. .|+.. .-...++.+|.. .-+.-+.=.++-++|
T Consensus 327 dN~dI~~~ip~Lld~l~dp-~~~~---~e~~~~L~~t-----tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Iid 397 (569)
T KOG1242|consen 327 DNPDIQKIIPTLLDALADP-SCYT---PECLDSLGAT-----TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIID 397 (569)
T ss_pred ccHHHHHHHHHHHHHhcCc-ccch---HHHHHhhcce-----eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHH
Confidence 4567999999999888542 3353 4445544333 23321 223344555531 113333357888889
Q ss_pred HhhcChhHHHhhhcC--CCHHHHHHHhhhhhhh
Q psy4828 243 VLTFNPKLADRMNKF--NVIPTLADILSDSVKE 273 (448)
Q Consensus 243 lLSF~~~~~~~l~~~--~iI~~L~~ilk~~~KE 273 (448)
-|++.-+=-..+..+ .++|.|-.++.++.-|
T Consensus 398 Nm~~LveDp~~lapfl~~Llp~lk~~~~d~~PE 430 (569)
T KOG1242|consen 398 NMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPE 430 (569)
T ss_pred HHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChh
Confidence 888864222222222 3455555554444333
No 196
>KOG2023|consensus
Probab=22.56 E-value=7.5e+02 Score=28.42 Aligned_cols=172 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHH-----HHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHH
Q psy4828 83 GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEI-----FKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKII 157 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~-----f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iL 157 (448)
+.....+..+|.+ ++.-+..-..--+.-++.|...+.+. ..+ --.+.|+.+.+++.+-|+..|...+
T Consensus 127 pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~-------~mipkfl~f~~h~spkiRs~A~~cv 198 (885)
T KOG2023|consen 127 PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN-------IMIPKFLQFFKHPSPKIRSHAVGCV 198 (885)
T ss_pred hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhcccCchH-------HhHHHHHHHHhCCChhHHHHHHhhh
Q ss_pred HHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhc-cCcchHHHHH
Q psy4828 158 AKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS-GRVNFQIQYQ 236 (448)
Q Consensus 158 t~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~-~~~~~Ql~Y~ 236 (448)
-.++--.+...-. .+.+|+..+-..-.-.+++....+-+++..||.+..-|.+=+-.+.+...+..-. ...++-+ +
T Consensus 199 Nq~i~~~~qal~~-~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VAL--E 275 (885)
T KOG2023|consen 199 NQFIIIQTQALYV-HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVAL--E 275 (885)
T ss_pred hheeecCcHHHHH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHH--H
Q ss_pred HHHHHHHhhcChhHHHhhhcC--CCHHHHHH
Q psy4828 237 LIFCLWVLTFNPKLADRMNKF--NVIPTLAD 265 (448)
Q Consensus 237 ~ll~lWlLSF~~~~~~~l~~~--~iI~~L~~ 265 (448)
+|-..-.+.-.+-..+.+..+ .+||.|+.
T Consensus 276 ACEFwla~aeqpi~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 276 ACEFWLALAEQPICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred HHHHHHHHhcCcCcHHHHHHHHHHHHHHHHc
No 197
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.49 E-value=1.1e+03 Score=26.72 Aligned_cols=110 Identities=18% Similarity=0.254 Sum_probs=56.5
Q ss_pred HHHHHhcccChhhHHHHHHHHHHHHHhhchh--HHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 88 TFLNLLEHISKDSTIQYILVLIDDILQEDRS--RVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 88 ~~l~lL~~~~~~d~vqyvL~li~dll~~~~~--~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
=++.+|.+ ++..+++.+-.++.+.+..+.+ .+..+. |-|+.-.+..++..|..-..
T Consensus 8 ~l~~~l~s-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---------------------~y~~~t~s~~~~~il~~~~~ 65 (668)
T PF04388_consen 8 ELLSLLES-NDLSVLEEIKALLQELLNSDREPWLVNGLV---------------------DYYLSTNSQRALEILVGVQE 65 (668)
T ss_pred HHHHHhcC-CchhhHHHHHHHHHHHhhccchHHHHHHHH---------------------HHHhhcCcHHHHHHHHhcCC
Confidence 35677777 6777788888887777766532 121111 33444444445554442221
Q ss_pred CCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHHHHhhcchhhHHHhhc
Q psy4828 166 DLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIAFINVDGIRTLLSVLS 226 (448)
Q Consensus 166 ~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~f~~~~gv~~L~~lL~ 226 (448)
+ .. +.|++-|.+-+..+ .+.-.++..|..+++. +..-..+.++..+..|+..|.
T Consensus 66 -P-~~---K~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~ 120 (668)
T PF04388_consen 66 -P-HD---KHLFDKLNDYFVKP--SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQ 120 (668)
T ss_pred -c-cH---HHHHHHHHHHHcCc--hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHh
Confidence 1 11 45666666555432 3333356666666665 333333444455555555553
No 198
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=22.31 E-value=4.1e+02 Score=24.01 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhc--CCchhHHHHHHHHHHHHHhcccCCCChhhHH
Q psy4828 97 SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLN--GSDGFIINMTAKIIAKIACWSVDLLNPSDLN 174 (448)
Q Consensus 97 ~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~--~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~ 174 (448)
+..|..-.+...+..+++-.|+...-+.. .+.--+.++++.. .++.-.+..++.+++.-..+.+.| .-..+
T Consensus 55 ~~~d~~i~~~~~l~~lfp~~~dv~~~l~~-----~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r--~~I~~ 127 (157)
T PF11701_consen 55 GEMDSLIIAFSALTALFPGPPDVGSELFL-----SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR--TFISK 127 (157)
T ss_dssp HHCCHHHHHHHHHHHHCTTTHHHHHHHCC-----TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH--HCCHH
T ss_pred ccchhHHHHHHHHHHHhCCCHHHHHHHHh-----hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH--HHHHH
Confidence 44555555566677777777755543332 2344556777887 678888888888888544332211 22358
Q ss_pred HHHHHHHHHhhhcCChh
Q psy4828 175 FYLTWLKDQLKLANNDY 191 (448)
Q Consensus 175 ~~l~~l~~~L~~~~~~~ 191 (448)
++++||...++.+.++.
T Consensus 128 ~~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 128 NYVSWLKELYKNSKDDS 144 (157)
T ss_dssp HCHHHHHHHTTTCC-HH
T ss_pred HHHHHHHHHHccccchH
Confidence 89999999886544443
No 199
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.90 E-value=2.3e+02 Score=25.53 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchh----hHHHhhccCcchHHHHHHHHHHHHhhcChhHH
Q psy4828 176 YLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIR----TLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLA 251 (448)
Q Consensus 176 ~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~----~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~ 251 (448)
+.+.+...|.+++++.+..|+.|+-. |+...+. .|-+++.++ ...--+..|.++.+...+
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~-----------~k~~~l~pY~d~L~~Lldd~-----~frdeL~~f~~~~~~~~I 81 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLT-----------WKDPYLTPYKDNLENLLDDK-----TFRDELTTFNLSDESSVI 81 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH-----------hCcHHHHhHHHHHHHHcCcc-----hHHHHHHhhcccCCcCCC
Confidence 33444556666667777788899884 4333322 234444432 123334555666665555
Q ss_pred HhhhcCCCHHHHHHHhhhh
Q psy4828 252 DRMNKFNVIPTLADILSDS 270 (448)
Q Consensus 252 ~~l~~~~iI~~L~~ilk~~ 270 (448)
+.=.+..+||.++.||=--
T Consensus 82 ~~ehR~~l~pvvlRILygk 100 (141)
T PF07539_consen 82 EEEHRPELMPVVLRILYGK 100 (141)
T ss_pred CHHHHhHHHHHHHHHHHHH
Confidence 5555678999999999443
No 200
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=21.81 E-value=1.4e+02 Score=26.00 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=30.6
Q ss_pred HHHHHHHHhhccchhhHHHHhhcchhhHHHhhc
Q psy4828 194 SVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS 226 (448)
Q Consensus 194 ~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~ 226 (448)
..++.++.|...|+.-..|++.+++++|+++|+
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~ 97 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLS 97 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC
Confidence 468999999999999999999999999999996
No 201
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=21.79 E-value=2.3e+02 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=24.7
Q ss_pred cchhHHHHHhC-cHHHHHhhh-cCCChhHHHH
Q psy4828 406 PRGKHVIEQLG-GKQLVMQLL-SHEDPNVRYE 435 (448)
Q Consensus 406 p~gr~il~~lg-~K~~vM~Lm-~h~d~eVr~e 435 (448)
++.-..++.+| .|..+...| .||||+|.+.
T Consensus 90 ~~C~afi~sLGCCk~ALl~F~KRHPNP~iA~~ 121 (140)
T PF10952_consen 90 TECEAFIDSLGCCKKALLDFMKRHPNPEIARL 121 (140)
T ss_pred cchHHHHHhhhccHHHHHHHHHhCCCHHHHHH
Confidence 46667789999 488899999 6999999875
No 202
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=21.31 E-value=8.9e+02 Score=24.74 Aligned_cols=105 Identities=15% Similarity=0.065 Sum_probs=64.0
Q ss_pred cChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhc---CCchhHHHHHHHHHHHHHhcccCCCChhh
Q psy4828 96 ISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLN---GSDGFIINMTAKIIAKIACWSVDLLNPSD 172 (448)
Q Consensus 96 ~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~---~~d~~I~~~a~~iLt~l~~~~~~~~~~~~ 172 (448)
..++.+.-..|.|+.--|-++|..+.-|++. ..-.+.++.... ..|..|+=+++.+|..++.+.++ ...-.
T Consensus 167 ~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~-----~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~-~s~~~ 240 (312)
T PF04869_consen 167 NSDPRIQIGYLMLLIVWLFECPDAVNDFLSE-----GSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTK-DSPIP 240 (312)
T ss_dssp T--HHHHHHHHHHHHHHHTT-HHHHHHHHCS-----TTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S--SCCC-
T ss_pred CCchhHHHHHHHHHHHHHhCCHHHHHHHHcC-----cchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCC-CCCcC
Confidence 3456677888899999999999999999884 233444555443 34788999999999999987632 11122
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHH
Q psy4828 173 LNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAF 212 (448)
Q Consensus 173 l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f 212 (448)
-..+.+.|.+.+.. +. ....+..+=+.+.||..-
T Consensus 241 R~~l~~ll~~riG~--d~----y~~kl~~lr~~~~f~~~~ 274 (312)
T PF04869_consen 241 RATLHPLLTKRIGR--DN----YFSKLEQLRKSPLFRDAE 274 (312)
T ss_dssp HHHHHHHHHHHT-H--HH----HHHHHHCCCCSTTHHHHT
T ss_pred HHHHHHHHHHhcCH--HH----HHHHHHHHhcChhhhccc
Confidence 24455556554421 12 334455556666666653
No 203
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.27 E-value=1.8e+02 Score=24.01 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=37.2
Q ss_pred hhHHhhCCCCHHhHHHHHHhhcCChH-HHH--HHHhhchhHHHHHHHHHhcccCh
Q psy4828 47 NTYQQSQMISKEDYDFITVFDTASSA-KRA--EMLNERRGHAAKTFLNLLEHISK 98 (448)
Q Consensus 47 ~~~~ra~~is~~d~~~ik~~d~~~~~-~r~--~~~~~~~~~~~~~~l~lL~~~~~ 98 (448)
+-....|.||++|++-|+.=...+.+ +|. ..+...|...++.|+.-+...+.
T Consensus 21 d~ll~~G~is~~Ecd~Ir~p~~T~sqqARrLLD~V~~KG~~A~~~ll~~vq~~~~ 75 (81)
T cd08788 21 ELLLTRGFFSSYDCDEIRLPIFTPSQQARRLLDLVKAKGEGAAKFLLEYVQQLPE 75 (81)
T ss_pred HHHHHcCCccHhhcchhhcCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCC
Confidence 44667899999999999985555444 332 56677777788888877766543
No 204
>KOG4535|consensus
Probab=21.05 E-value=2.5e+02 Score=30.81 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHh-CcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQL-GGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
-++-|.|+-+|.....|.|+.-..-.++-+|..-|.-|-.+.-+ ..-..|-.++.|.|+.||--||.-...|++.
T Consensus 105 ~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 105 RELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 46677888888654455555555556888999888777554311 1223566788999999999999988888764
No 205
>KOG1789|consensus
Probab=20.78 E-value=8.2e+02 Score=29.93 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhcccCCC----ChhhHHHHHHHHHHHhhhc-CChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHH
Q psy4828 149 IINMTAKIIAKIACWSVDLL----NPSDLNFYLTWLKDQLKLA-NNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLS 223 (448)
Q Consensus 149 I~~~a~~iLt~l~~~~~~~~----~~~~l~~~l~~l~~~L~~~-~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~ 223 (448)
-.++++.-|.+++.+.|+.. +++.+-..|..+...++.. .+..++.|.+.+..+-.+++.-....+.+...+|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 45667777888887765332 2333444444444444432 344545566666666666666565555565667778
Q ss_pred hhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHh
Q psy4828 224 VLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADIL 267 (448)
Q Consensus 224 lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~il 267 (448)
+|.+..+..- -++-+++-||-+++++.+-.++|.+-.+.+++
T Consensus 1821 lLHS~PS~R~--~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~ 1862 (2235)
T KOG1789|consen 1821 LLHSQPSMRA--RVLDVLYALSSNGQIGKEALEHGGLMYILSIL 1862 (2235)
T ss_pred HHhcChHHHH--HHHHHHHHHhcCcHHHHHHHhcCchhhhhHHH
Confidence 8865544433 56666778999999988876665444555444
No 206
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=20.41 E-value=4.1e+02 Score=24.31 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=34.8
Q ss_pred hhchhHHHHHHHhhhcCCCchhHHHHhhhcC-CchhHHHHHHHHHHHHHhcc
Q psy4828 114 QEDRSRVEIFKEYSQTKREPVCSQFLNLLNG-SDGFIINMTAKIIAKIACWS 164 (448)
Q Consensus 114 ~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~-~d~~I~~~a~~iLt~l~~~~ 164 (448)
+.+++.-++|.+. +....|++.+++ ....|+.+.++.++.|++.-
T Consensus 13 q~~~~~Fd~F~E~------nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi 58 (149)
T PF09758_consen 13 QNDPSFFDFFMEK------NILSTFVRILKQSRSSSVKLQLLQTLSILIQNI 58 (149)
T ss_pred cCCcHHHHHHHHH------HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 4456788888886 778889999987 46678888888898888743
No 207
>KOG2090|consensus
Probab=20.30 E-value=1.1e+02 Score=34.08 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=34.2
Q ss_pred hHhhHhhh-CcchhHHHHHhCcHHHHHhhhcCCChhHH-HHHHHHH
Q psy4828 397 DIGEYVRH-CPRGKHVIEQLGGKQLVMQLLSHEDPNVR-YEALLAV 440 (448)
Q Consensus 397 DIge~vr~-~p~gr~il~~lg~K~~vM~Lm~h~d~eVr-~eAL~av 440 (448)
|++||||- ||+-.-+-.--.+-.-+.++|+|=|.+|- |+||+++
T Consensus 99 DLaEfvR~aHPd~~fv~aAe~a~~~~~e~ve~LNTn~~LY~~Lk~~ 144 (704)
T KOG2090|consen 99 DLAEFVRQAHPDPEFVEAAEEACRSMFELVESLNTNVALYQKLKKV 144 (704)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999996 78877776666677788899988777764 7777653
No 208
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=20.25 E-value=6.1e+02 Score=23.68 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=50.9
Q ss_pred HHHhchhhhhhhhHHHHHHHHHhhcc---CCCh--hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHH
Q psy4828 359 FWRENAPRLHEKNYELLKSLIHLLET---SRDP--LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVR 433 (448)
Q Consensus 359 FW~EN~~kf~e~~~~llk~L~~lL~~---S~D~--~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr 433 (448)
||..-.-.=.|+---+.|+|+-+=.. -.|| .++|++|++..+.+-. |+|+-.| -+.|+-|-..+-++=-
T Consensus 9 ywlarml~~GeDp~~i~RRL~i~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i~L-----a~aviyLa~apKSns~ 82 (168)
T PF12002_consen 9 YWLARMLEGGEDPRFIARRLIIIASEDIGLADPQALSIAVAAYQAVERIGM-PEARIPL-----AQAVIYLALAPKSNSA 82 (168)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHCTGGGSTCHHHHHHHHHHHHHHH-C-CCCHHHH-----HHHHHHHHHS----HH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHHHHHHCC-cHHHHHH-----HHHHHHHHhcccccHH
Confidence 45443333344555677787776421 1344 6889999999999886 9999988 3577778888888888
Q ss_pred HHHHHHHHHHh
Q psy4828 434 YEALLAVQKLM 444 (448)
Q Consensus 434 ~eAL~avQklm 444 (448)
|.|+..+.+.+
T Consensus 83 y~a~~~A~~~v 93 (168)
T PF12002_consen 83 YLAINKAKEDV 93 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777654
Done!