Query psy4828
Match_columns 448
No_of_seqs 135 out of 248
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 18:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ho8_A Vacuolar ATP synthase s 100.0 3E-107 1E-111 847.6 38.1 417 23-448 6-479 (480)
2 1jdh_A Beta-catenin; beta-cate 99.7 6.3E-15 2.2E-19 152.9 30.4 330 63-443 167-528 (529)
3 4b8j_A Importin subunit alpha- 99.6 2.2E-13 7.7E-18 142.6 33.0 329 63-445 142-496 (528)
4 1xm9_A Plakophilin 1; armadill 99.6 4.3E-14 1.5E-18 147.3 22.7 289 135-444 4-359 (457)
5 2z6g_A B-catenin; FULL-length, 99.6 2.5E-13 8.6E-18 150.7 29.3 332 64-446 301-664 (780)
6 1wa5_B Importin alpha subunit; 99.6 1.9E-12 6.7E-17 135.9 33.7 352 43-445 120-510 (530)
7 3tpo_A Importin subunit alpha- 99.6 2.3E-12 7.9E-17 136.1 34.4 350 41-444 107-496 (529)
8 3ul1_B Importin subunit alpha- 99.6 1.7E-12 5.9E-17 136.7 33.1 350 41-444 88-477 (510)
9 2z6h_A Catenin beta-1, beta-ca 99.6 4.8E-13 1.6E-17 144.4 28.9 334 62-446 163-528 (644)
10 2jdq_A Importin alpha-1 subuni 99.5 1.2E-11 4E-16 125.4 31.9 312 85-445 108-443 (450)
11 1xm9_A Plakophilin 1; armadill 99.5 3.9E-12 1.3E-16 132.5 27.4 338 60-446 23-450 (457)
12 2z6h_A Catenin beta-1, beta-ca 99.5 4.1E-12 1.4E-16 137.1 26.8 330 61-446 36-383 (644)
13 3now_A UNC-45 protein, SD10334 99.5 1.1E-11 3.7E-16 137.9 29.5 315 83-446 376-738 (810)
14 1jdh_A Beta-catenin; beta-cate 99.5 1.1E-11 3.8E-16 128.4 27.1 331 60-446 38-386 (529)
15 4db8_A Armadillo-repeat protei 99.5 2.5E-12 8.5E-17 121.0 19.4 226 176-445 13-251 (252)
16 4b8j_A Importin subunit alpha- 99.5 1.4E-11 4.8E-16 128.9 27.1 318 74-445 110-443 (528)
17 3now_A UNC-45 protein, SD10334 99.5 5E-11 1.7E-15 132.6 31.9 327 66-446 274-653 (810)
18 3nmz_A APC variant protein; pr 99.4 4.4E-11 1.5E-15 125.4 28.5 346 59-447 49-452 (458)
19 4hxt_A De novo protein OR329; 99.4 1.4E-11 4.9E-16 114.7 22.2 223 181-447 8-243 (252)
20 2jdq_A Importin alpha-1 subuni 99.4 2.4E-11 8.1E-16 123.1 25.2 307 86-445 22-347 (450)
21 3ul1_B Importin subunit alpha- 99.4 2.7E-11 9.3E-16 127.6 26.3 316 74-444 93-429 (510)
22 1wa5_B Importin alpha subunit; 99.4 3.5E-11 1.2E-15 126.2 26.5 309 85-445 131-457 (530)
23 3tpo_A Importin subunit alpha- 99.4 7.3E-11 2.5E-15 124.6 28.7 316 74-444 112-448 (529)
24 3nmz_A APC variant protein; pr 99.3 2.9E-10 1E-14 119.2 26.0 283 112-445 56-408 (458)
25 2z6g_A B-catenin; FULL-length, 99.3 2.8E-10 9.7E-15 126.2 25.2 309 84-445 192-518 (780)
26 3nmw_A APC variant protein; AR 99.3 2.8E-10 9.7E-15 115.4 22.0 258 150-447 49-336 (354)
27 3l6x_A Catenin delta-1; cateni 99.3 2.5E-10 8.4E-15 123.0 21.1 290 133-445 48-384 (584)
28 3l6x_A Catenin delta-1; cateni 99.2 5.4E-09 1.8E-13 112.6 29.7 335 62-446 71-477 (584)
29 4db6_A Armadillo repeat protei 99.2 1.3E-09 4.5E-14 99.6 19.0 196 175-445 12-209 (210)
30 4hxt_A De novo protein OR329; 99.1 6.8E-09 2.3E-13 96.4 20.8 222 86-325 4-238 (252)
31 4db8_A Armadillo-repeat protei 99.1 4.5E-09 1.5E-13 98.6 17.8 220 84-321 12-244 (252)
32 3nmw_A APC variant protein; AR 99.0 1.3E-08 4.6E-13 103.1 18.6 213 193-445 50-292 (354)
33 4db6_A Armadillo repeat protei 98.9 2E-08 6.7E-13 91.7 16.0 185 130-325 9-206 (210)
34 3opb_A SWI5-dependent HO expre 98.8 5.4E-06 1.8E-10 91.5 30.6 322 71-446 244-636 (778)
35 3opb_A SWI5-dependent HO expre 98.6 2.4E-05 8.4E-10 86.3 28.6 323 84-444 334-727 (778)
36 1xqr_A HSPBP1 protein; armadil 98.5 5.9E-06 2E-10 81.6 19.2 209 194-444 59-286 (296)
37 3tt9_A Plakophilin-2; cell adh 98.4 4.4E-06 1.5E-10 79.9 15.2 176 85-272 9-208 (233)
38 3grl_A General vesicular trans 98.4 2.7E-05 9.1E-10 84.2 22.6 319 57-413 37-404 (651)
39 1xqr_A HSPBP1 protein; armadil 98.3 1.4E-05 4.8E-10 78.9 16.0 168 236-445 59-238 (296)
40 3tt9_A Plakophilin-2; cell adh 98.2 1.2E-05 4E-10 77.0 11.5 184 133-325 8-227 (233)
41 1w63_A Adapter-related protein 98.1 0.002 6.9E-08 69.3 29.6 261 136-446 110-380 (618)
42 2vgl_B AP-2 complex subunit be 98.0 0.003 1E-07 67.4 27.9 296 136-446 124-494 (591)
43 3grl_A General vesicular trans 97.7 0.01 3.5E-07 64.2 25.3 283 133-447 60-396 (651)
44 1ibr_B P95, importin beta-1 su 97.6 0.0013 4.5E-08 65.9 16.6 347 82-445 33-437 (462)
45 4fdd_A Transportin-1; heat rep 97.6 0.0098 3.4E-07 65.6 24.3 328 83-444 44-428 (852)
46 4fdd_A Transportin-1; heat rep 97.6 0.0028 9.7E-08 69.9 19.9 354 55-444 83-470 (852)
47 2vgl_A Adaptor protein complex 97.5 0.03 1E-06 60.4 25.5 322 84-445 187-550 (621)
48 1b3u_A Protein (protein phosph 97.4 0.012 4.1E-07 60.8 20.9 67 373-443 519-585 (588)
49 1w63_A Adapter-related protein 97.4 0.032 1.1E-06 59.8 24.5 347 88-446 126-541 (618)
50 2bpt_A Importin beta-1 subunit 97.2 0.09 3.1E-06 57.0 25.9 330 82-444 37-397 (861)
51 3b2a_A TON_1937, putative unch 97.1 0.2 6.7E-06 48.0 24.7 230 73-331 23-264 (265)
52 2vgl_A Adaptor protein complex 97.1 0.12 4.1E-06 55.6 25.2 294 99-444 88-397 (621)
53 1b3u_A Protein (protein phosph 97.1 0.1 3.5E-06 53.7 23.8 89 134-227 204-292 (588)
54 1qgr_A Protein (importin beta 97.0 0.12 4E-06 56.3 23.9 334 82-445 33-395 (876)
55 3ltm_A Alpha-REP4; protein eng 96.6 0.084 2.9E-06 47.5 16.1 185 131-443 17-201 (211)
56 1ibr_B P95, importin beta-1 su 96.5 0.51 1.8E-05 46.8 22.6 292 137-444 39-394 (462)
57 3ltj_A Alpharep-4; protein eng 96.4 0.096 3.3E-06 46.7 14.9 185 131-443 12-196 (201)
58 2bpt_A Importin beta-1 subunit 95.9 1.5 5.1E-05 47.4 24.2 70 373-445 639-711 (861)
59 2vgl_B AP-2 complex subunit be 95.9 0.16 5.4E-06 54.0 16.1 256 85-445 50-311 (591)
60 1u6g_C TIP120 protein, CAND1; 95.6 1.1 3.8E-05 51.2 22.8 70 372-444 433-505 (1230)
61 1qgr_A Protein (importin beta 95.4 3.7 0.00013 44.3 28.7 72 373-444 796-870 (876)
62 2qk2_A LP04448P; mini spindles 95.3 1.2 4E-05 41.0 17.9 70 373-445 133-205 (242)
63 1u6g_C TIP120 protein, CAND1; 93.4 14 0.00046 42.2 25.3 70 372-445 649-721 (1230)
64 1oyz_A Hypothetical protein YI 92.8 6.1 0.00021 36.6 21.5 129 118-268 39-169 (280)
65 2qk2_A LP04448P; mini spindles 92.4 4.3 0.00015 37.1 15.6 146 84-245 56-204 (242)
66 2fv2_A RCD1 required for cell 92.3 1.5 5.2E-05 42.3 12.3 174 26-214 44-234 (268)
67 4gmo_A Putative uncharacterize 92.0 3.4 0.00012 44.6 16.6 86 183-270 42-131 (684)
68 1te4_A Conserved protein MTH18 91.5 0.2 7E-06 41.9 4.9 56 375-442 44-99 (131)
69 3ltj_A Alpharep-4; protein eng 90.5 0.43 1.5E-05 42.4 6.2 74 358-443 59-134 (201)
70 3tjz_B Coatomer subunit gamma; 90.2 7.7 0.00026 38.8 15.8 232 135-441 106-349 (355)
71 4gmo_A Putative uncharacterize 90.0 4.1 0.00014 44.0 14.7 164 86-257 36-226 (684)
72 3ltm_A Alpha-REP4; protein eng 89.9 0.51 1.7E-05 42.2 6.3 74 358-443 64-139 (211)
73 3b2a_A TON_1937, putative unch 89.3 1.2 4.2E-05 42.6 8.5 86 358-446 17-105 (265)
74 1te4_A Conserved protein MTH18 89.3 0.28 9.4E-06 41.1 3.8 59 373-443 73-131 (131)
75 1oyz_A Hypothetical protein YI 89.0 0.82 2.8E-05 42.7 7.3 62 372-443 158-219 (280)
76 2qk1_A Protein STU2; STU2P, XM 87.6 1.1 3.9E-05 42.1 7.3 72 372-445 59-133 (249)
77 2qk1_A Protein STU2; STU2P, XM 87.4 2 6.9E-05 40.4 8.9 72 373-445 146-220 (249)
78 3dad_A FH1/FH2 domain-containi 82.8 40 0.0014 33.5 22.3 211 77-327 111-335 (339)
79 2of3_A ZYG-9; multifunctional 80.8 3.3 0.00011 40.0 7.1 66 373-444 167-235 (266)
80 4ffb_C Protein STU2; tubulin f 78.6 3.8 0.00013 38.6 6.8 70 373-445 139-212 (278)
81 1upk_A MO25 protein; transfera 77.4 25 0.00085 35.0 12.4 125 56-184 181-310 (341)
82 3dad_A FH1/FH2 domain-containi 69.3 89 0.003 31.0 14.2 163 183-345 126-303 (339)
83 2p1h_A APAF-1, apoptotic prote 59.8 13 0.00043 29.4 5.0 54 46-101 28-85 (94)
84 2i9c_A Hypothetical protein RP 59.4 3.4 0.00012 35.3 1.5 49 389-437 25-78 (123)
85 1upk_A MO25 protein; transfera 57.3 1.6E+02 0.0053 29.3 18.0 157 135-327 166-331 (341)
86 3ygs_P Procaspase 9; apoptosis 56.5 23 0.00079 28.4 6.1 58 44-101 25-86 (97)
87 4e9m_A Nucleotide-binding olig 51.5 10 0.00035 33.1 3.3 51 46-96 47-99 (144)
88 3ldz_A STAM-1, signal transduc 47.1 39 0.0013 28.9 6.4 70 103-184 24-94 (140)
89 3lf5_A Cytochrome B5 reductase 46.9 4.7 0.00016 32.2 0.4 33 395-427 30-64 (88)
90 3o2t_A Symplekin; heat repeat, 46.5 1.5E+02 0.0052 29.8 11.6 77 368-445 95-183 (386)
91 1ho8_A Vacuolar ATP synthase s 46.2 60 0.0021 33.8 8.7 77 81-163 392-477 (480)
92 1hko_A Cytochrome B5; electron 45.2 4.9 0.00017 33.1 0.2 34 395-428 33-68 (104)
93 2ibj_A Cytochrome B5, CYTB5; F 44.4 4.8 0.00017 31.9 0.1 34 395-428 31-66 (88)
94 3ner_A Cytochrome B5 type B; h 43.8 5.2 0.00018 32.2 0.2 35 395-429 34-70 (92)
95 2nz7_A NOD1, caspase recruitme 43.5 33 0.0011 27.8 5.0 51 45-96 32-85 (98)
96 1cyo_A Cytochrome B5; electron 43.1 5 0.00017 32.3 -0.0 34 395-428 29-64 (93)
97 4ady_A RPN2, 26S proteasome re 39.9 3.3E+02 0.011 30.8 13.9 101 131-245 539-640 (963)
98 2bnx_A Diaphanous protein homo 39.2 3E+02 0.01 27.3 17.4 147 192-340 75-245 (386)
99 3eg5_B Protein diaphanous homo 38.8 3E+02 0.01 27.3 21.8 181 80-332 108-298 (383)
100 3tjz_B Coatomer subunit gamma; 38.4 1.3E+02 0.0045 29.7 9.6 114 86-205 88-206 (355)
101 1cxy_A Cytochrome B5; helix, b 37.6 4.5 0.00015 32.3 -1.1 29 395-423 32-62 (90)
102 3crd_A Raidd; caspase recruitm 36.0 42 0.0014 26.8 4.6 56 39-95 20-78 (100)
103 2f31_A Diaphanous protein homo 35.7 2.6E+02 0.0088 25.5 16.3 137 192-330 71-230 (233)
104 1wa5_C Importin alpha RE-expor 34.7 73 0.0025 35.3 7.7 66 374-444 456-524 (960)
105 1x3x_A Cytochrome B5; hemoprot 34.2 7.8 0.00027 30.3 -0.2 24 395-419 28-51 (82)
106 1x5b_A Signal transducing adap 34.0 77 0.0026 27.8 6.3 66 108-184 38-104 (163)
107 4ffb_C Protein STU2; tubulin f 33.6 2.6E+02 0.009 25.5 10.5 69 136-204 142-212 (278)
108 2fv2_A RCD1 required for cell 32.6 3.3E+02 0.011 26.0 10.8 76 193-270 74-157 (268)
109 1mj4_A Sulfite oxidase; cytoch 32.4 11 0.00039 29.4 0.5 25 395-419 30-54 (82)
110 4ady_A RPN2, 26S proteasome re 32.2 5.9E+02 0.02 28.7 24.1 67 373-446 611-677 (963)
111 3kat_A Nacht, LRR and PYD doma 31.5 42 0.0014 27.7 3.8 64 30-95 20-90 (107)
112 2keo_A Probable E3 ubiquitin-p 31.4 6.8 0.00023 32.8 -1.0 34 395-428 48-83 (112)
113 2of5_H Leucine-rich repeat and 30.8 2E+02 0.007 23.5 8.1 82 22-106 6-94 (118)
114 3g2s_A C-terminal fragment of 29.9 1E+02 0.0035 26.7 6.3 66 108-184 34-100 (149)
115 3m1i_C Exportin-1; heat repeat 29.8 46 0.0016 37.4 5.1 72 372-445 494-569 (1049)
116 2x19_B Importin-13; nuclear tr 29.0 66 0.0023 35.2 6.1 70 377-446 61-133 (963)
117 2kn6_A Apoptosis-associated sp 28.6 32 0.0011 31.9 2.9 51 45-97 152-205 (215)
118 2f31_A Diaphanous protein homo 27.6 82 0.0028 28.9 5.6 68 198-266 24-104 (233)
119 2k5e_A Uncharacterized protein 27.4 28 0.00097 26.5 2.0 20 398-417 11-30 (73)
120 4gof_A Small glutamine-rich te 26.8 75 0.0026 22.9 4.0 33 174-206 7-44 (52)
121 1mhq_A ADP-ribosylation factor 26.7 1.1E+02 0.0036 26.5 5.8 82 109-201 25-113 (148)
122 2x1g_F Cadmus; transport prote 26.4 54 0.0018 36.2 4.8 72 377-448 43-117 (971)
123 2dco_A S1P4 first extracellula 25.1 23 0.0008 22.8 0.9 21 335-355 2-26 (34)
124 1juq_A ADP-ribosylation factor 24.6 1.3E+02 0.0043 26.6 6.0 82 109-201 37-125 (171)
125 2fi0_A Conserved domain protei 24.5 31 0.0011 26.7 1.7 19 398-416 15-33 (81)
126 1lsh_A Lipovitellin (LV-1N, LV 24.1 8E+02 0.028 27.6 15.2 140 62-204 316-469 (1056)
127 3zyq_A Hepatocyte growth facto 23.9 1.7E+02 0.0059 26.8 7.1 25 421-445 50-74 (226)
128 1vdy_A Hypothetical protein (R 23.7 2.9E+02 0.0099 23.7 8.0 63 101-182 27-90 (140)
129 1vdy_A Hypothetical protein (R 22.7 1.4E+02 0.0047 25.8 5.7 47 394-446 31-79 (140)
130 3zyq_A Hepatocyte growth facto 22.2 1.1E+02 0.0039 28.0 5.5 71 103-185 27-98 (226)
131 3bge_A Predicted ATPase; struc 21.6 1.4E+02 0.0047 27.4 5.7 71 369-445 38-113 (201)
132 1x5b_A Signal transducing adap 20.5 3.7E+02 0.013 23.2 8.3 68 372-442 51-122 (163)
133 2k53_A A3DK08 protein; NESG, C 20.1 53 0.0018 25.2 2.3 20 398-417 9-28 (76)
134 3eg5_B Protein diaphanous homo 20.1 1.6E+02 0.0055 29.3 6.5 73 195-268 87-172 (383)
135 2r9g_A AAA ATPase, central reg 20.1 1.5E+02 0.005 27.3 5.5 67 373-445 48-119 (204)
No 1
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=100.00 E-value=2.8e-107 Score=847.60 Aligned_cols=417 Identities=25% Similarity=0.422 Sum_probs=365.3
Q ss_pred ccccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChH-HHHHH----------HhhchhHHHHHHHH
Q psy4828 23 TDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSA-KRAEM----------LNERRGHAAKTFLN 91 (448)
Q Consensus 23 ~~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~-~r~~~----------~~~~~~~~~~~~l~ 91 (448)
.-..++++||++.+++||+|+|||++|+|||+||++|+++||+||+.+.+ .+.+. +..+ +.|+++|++
T Consensus 6 ~~~~ld~t~l~~~~~~Ir~R~IpWd~~~ra~~Is~~d~~~ik~~dk~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~ 84 (480)
T 1ho8_A 6 TKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSSNNAHSGFKVN-GKTLIPLIH 84 (480)
T ss_dssp CCCSCSCHHHHHHHHHHHHSCCCHHHHHHTTSSCHHHHHHHHHHHHHHHCC-----------------CS-STTHHHHHH
T ss_pred ceeeecchHHHHHHHHHhcCCCChHHHHHhCCCCHHHHHHHHHHhcccHHHHHhhhhccchhhhhhhhcC-chHHHHHHH
Confidence 34578999999999999999999999999999999999999999998733 44443 5666 589999999
Q ss_pred HhcccChhhHHHHHHHHHHHHHhhch---hHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC
Q psy4828 92 LLEHISKDSTIQYILVLIDDILQEDR---SRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL 168 (448)
Q Consensus 92 lL~~~~~~d~vqyvL~li~dll~~~~---~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~ 168 (448)
+|++++++|++||+|++|+||++++| +++++|++. +..+..||..+++++|+++++.|+.+++.+++.++.
T Consensus 85 lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~----~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~~~-- 158 (480)
T 1ho8_A 85 LLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQED----PKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLH-- 158 (480)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHC----TTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTC--
T ss_pred HHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhC----cccchHHHHHHhcccchHHHHHHHHHHHHHhccCCc--
Confidence 99999999999999999999999999 999999885 334444677777889999999999999999876643
Q ss_pred ChhhHHHHHH--HHHHHhhhcC-ChhHHHHHHHHHHhhccchhhHHHHhhcc--hhhHHHhh----------------cc
Q psy4828 169 NPSDLNFYLT--WLKDQLKLAN-NDYMQSVARCLQMMLRIDEYRIAFINVDG--IRTLLSVL----------------SG 227 (448)
Q Consensus 169 ~~~~l~~~l~--~l~~~L~~~~-~~~~~~~~~~l~~lL~~~~~R~~f~~~~g--v~~L~~lL----------------~~ 227 (448)
+++.++.+++ |+..+|+..+ .+...++++||+.||+.++||..||+++| +++++.++ ++
T Consensus 159 ~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~ 238 (480)
T 1ho8_A 159 NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSN 238 (480)
T ss_dssp CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------
T ss_pred cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCC
Confidence 7888999999 9999987532 23334699999999999999999999876 34443322 34
Q ss_pred CcchHHHHHHHHHHHHhhcChhHHHhhhcCCCH--HHHHHHhhhhhhhh----------hcccCCCchhHHHHHHHH-HH
Q psy4828 228 RVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVI--PTLADILSDSVKEK----------NLIEKPTEPALAKENCIA-MV 294 (448)
Q Consensus 228 ~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI--~~L~~ilk~~~KEK----------NLl~~~~~~~~~~~~~~~-mv 294 (448)
++|+|+||+++||+|+|||++++++.|.+.+++ +.|+++++.++||| |++++.++.. ...+.+ |+
T Consensus 239 ~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~--~~~~~~~~~ 316 (480)
T 1ho8_A 239 HLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH--KKVIKQLLL 316 (480)
T ss_dssp CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH--HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh--hhHHHHHHH
Confidence 568999999999999999999999999776654 88999999999999 9999876432 123444 55
Q ss_pred hcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHH
Q psy4828 295 QSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYEL 374 (448)
Q Consensus 295 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~l 374 (448)
.+++++++++|++|||+||||.+||++|.++|++++++|||||||++||+||+|+|||||+||+||+||++||+||||++
T Consensus 317 ~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~l 396 (480)
T 1ho8_A 317 LGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKI 396 (480)
T ss_dssp HHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHH
T ss_pred HccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc---------CCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 375 LKSLIHLLET---------SRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 375 lk~L~~lL~~---------S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+|+|+++|++ |+||+++|||||||||||||||+||.+++++|||++||+||+|+|++||||||+||||+|+
T Consensus 397 lk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 397 FRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999974 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy4828 446 HNW 448 (448)
Q Consensus 446 ~~W 448 (448)
|||
T Consensus 477 ~~~ 479 (480)
T 1ho8_A 477 YTF 479 (480)
T ss_dssp HSC
T ss_pred hcC
Confidence 999
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.71 E-value=6.3e-15 Score=152.87 Aligned_cols=330 Identities=13% Similarity=0.114 Sum_probs=230.5
Q ss_pred HHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhh
Q psy4828 63 ITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLL 142 (448)
Q Consensus 63 ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL 142 (448)
+..+-....+.+..+.+.++ +..++++|..-...+....+...+..+......+. .+.+. ...++++++|
T Consensus 167 L~~la~~~~~~~~~i~~~~~---i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~------g~~~~L~~ll 236 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGG---PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEA------GGMQALGLHL 236 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTH---HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHH-HHHHT------THHHHHHTTT
T ss_pred HHHHHhCCHHHHHHHHHCCC---HHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHH-HHHHC------CCHHHHHHHH
Confidence 33443334556666666655 88899999886556666667777777765433443 35443 5788999999
Q ss_pred cCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHHHHhhcchhhH
Q psy4828 143 NGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIAFINVDGIRTL 221 (448)
Q Consensus 143 ~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~f~~~~gv~~L 221 (448)
.++++.+...++.+|..|....+.. +.....+..|...+++.+++....+..+|..+... ++.|..+.+.+|++.|
T Consensus 237 ~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L 313 (529)
T 1jdh_A 237 TDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313 (529)
T ss_dssp TSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHH
T ss_pred hCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHH
Confidence 9999999999999999998655322 22356677777777665566666788999998876 4699999999999999
Q ss_pred HHhhcc-CcchHHHHHHHHHHHHhhcCh-h---HHHhhhcCCCHHHHHHHhhhhhh----hh------hcccCCCchhHH
Q psy4828 222 LSVLSG-RVNFQIQYQLIFCLWVLTFNP-K---LADRMNKFNVIPTLADILSDSVK----EK------NLIEKPTEPALA 286 (448)
Q Consensus 222 ~~lL~~-~~~~Ql~Y~~ll~lWlLSF~~-~---~~~~l~~~~iI~~L~~ilk~~~K----EK------NLl~~~~~~~~~ 286 (448)
+.+|.. ....++++.++.+++-|+... + ....+...|.||.|+++++.... +. |+...+.
T Consensus 314 ~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~----- 388 (529)
T 1jdh_A 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA----- 388 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-----
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-----
Confidence 999964 334678889999999999863 2 34566777889999999986532 11 6665432
Q ss_pred HHHHHHHHhcchHH-HHHHHhcCCCCChHHHHHHHHH-H--------------HHHHHHhhhcchHHHHHHHHhhCCccc
Q psy4828 287 KENCIAMVQSKVLK-QLSILEQRKFDDEDIVEDVQFL-N--------------EKLQASVQDLSSFDEYKTEVKSGRLEW 350 (448)
Q Consensus 287 ~~~~~~mv~~~~l~-~l~~L~~rk~~Dedl~edl~~L-~--------------e~L~~~~~~lTsfDeY~~El~SG~L~W 350 (448)
+...+++.|+++ +++.|.. . |+++.....+. . ...-..+..|+.
T Consensus 389 --~~~~~~~~~~i~~L~~ll~~-~--~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--------------- 448 (529)
T 1jdh_A 389 --NHAPLREQGAIPRLVQLLVR-A--HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--------------- 448 (529)
T ss_dssp --GHHHHHHTTHHHHHHHHHHH-H--HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT---------------
T ss_pred --hhHHHHHcCCHHHHHHHHHH-H--hHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc---------------
Confidence 224677888655 4444543 2 33333221110 0 000111111121
Q ss_pred CCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCCh
Q psy4828 351 SPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDP 430 (448)
Q Consensus 351 SP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~ 430 (448)
|.+|...+.+ .+++..|+++| .+.++.++..|+..++.++.. |.++..+.+.||.+.+++|+.|+|+
T Consensus 449 ---------~~~~~~~l~~--~~~v~~l~~ll-~~~~~~v~~~a~~~l~~l~~~-~~~~~~i~~~~~~~~L~~l~~~~~~ 515 (529)
T 1jdh_A 449 ---------DVHNRIVIRG--LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNE 515 (529)
T ss_dssp ---------SHHHHHHHHH--TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHGGGCSSH
T ss_pred ---------CchHHHHHhc--cCCccHHHHHH-cCCchHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHhcCCCH
Confidence 2344444444 46789999999 577899999999999999865 8999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q psy4828 431 NVRYEALLAVQKL 443 (448)
Q Consensus 431 eVr~eAL~avQkl 443 (448)
+|++.|..++++|
T Consensus 516 ~v~~~a~~aL~~l 528 (529)
T 1jdh_A 516 GVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.65 E-value=2.2e-13 Score=142.61 Aligned_cols=329 Identities=12% Similarity=0.158 Sum_probs=237.5
Q ss_pred HHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhh
Q psy4828 63 ITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLL 142 (448)
Q Consensus 63 ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL 142 (448)
+..+-....+.+..+++.+ .+..|+.+|.+ +++++...++..+..+..+.+.....+.+. ...++++.+|
T Consensus 142 L~~l~~~~~~~~~~~~~~g---~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~------g~l~~Ll~lL 211 (528)
T 4b8j_A 142 LTNIASGTSENTKVVIDHG---AVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLAN------GALLPLLAQL 211 (528)
T ss_dssp HHHHHTSCHHHHHHHHHTT---HHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHT------TCHHHHHHTC
T ss_pred HHHHhCCCHHHHHHHHhCC---cHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHC------CcHHHHHHHH
Confidence 3333333344555555444 48889999998 778899999999999998877655556553 5688999999
Q ss_pred -cCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhh-HHHHhhcchhh
Q psy4828 143 -NGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR-IAFINVDGIRT 220 (448)
Q Consensus 143 -~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R-~~f~~~~gv~~ 220 (448)
.++++.++..|+..|..|....+. .........+..|...+.+++......++.+|..+......+ ..+.+.++++.
T Consensus 212 ~~~~~~~v~~~a~~~L~~L~~~~~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 212 NEHTKLSMLRNATWTLSNFCRGKPQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 290 (528)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCSSSC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHH
Confidence 667899999999999999865532 233334556667777776655566667889999998877665 57778889999
Q ss_pred HHHhhccCcchHHHHHHHHHHHHhhcC-hhHHHhhhcCCCHHHHHHHhhhh----hhhh------hcccCCCchhHHHHH
Q psy4828 221 LLSVLSGRVNFQIQYQLIFCLWVLTFN-PKLADRMNKFNVIPTLADILSDS----VKEK------NLIEKPTEPALAKEN 289 (448)
Q Consensus 221 L~~lL~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~iI~~L~~ilk~~----~KEK------NLl~~~~~~~~~~~~ 289 (448)
|+.+|.+. ...++..++.+++-++.. +.....+.+.|++|.|+.+++.. +++. |+....+ +.
T Consensus 291 Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~------~~ 363 (528)
T 4b8j_A 291 LVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK------DQ 363 (528)
T ss_dssp HHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH------HH
T ss_pred HHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH------HH
Confidence 99999654 346666999999999984 45566667789999999999755 2333 7765432 23
Q ss_pred HHHHHhcchHH-HHHHHhcCCCCChHHHHHHHH-HHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhh
Q psy4828 290 CIAMVQSKVLK-QLSILEQRKFDDEDIVEDVQF-LNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367 (448)
Q Consensus 290 ~~~mv~~~~l~-~l~~L~~rk~~Dedl~edl~~-L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf 367 (448)
+..++..|+++ +++.|... |+++...... |.+. ...- -.+.. ..+
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~aL~nl-~~~~-----~~~~~------------------------~~l 410 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTA---EFDIKKEAAWAISNA-TSGG-----SHDQI------------------------KYL 410 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHS---CHHHHHHHHHHHHHH-HHHS-----CHHHH------------------------HHH
T ss_pred HHHHHHCCCHHHHHHHHhcC---CHHHHHHHHHHHHHH-HcCC-----CHHHH------------------------HHH
Confidence 44677777655 55555543 6666554433 3333 1110 01222 222
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc-----------hhHHHHHhCcHHHHHhhhcCCChhHHHHH
Q psy4828 368 HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR-----------GKHVIEQLGGKQLVMQLLSHEDPNVRYEA 436 (448)
Q Consensus 368 ~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~-----------gr~il~~lg~K~~vM~Lm~h~d~eVr~eA 436 (448)
-+ .++++.|+++| .+.|+.+..+|+.-|+.+++..+. ....+++.||.+.+++|+.|+|++|+..|
T Consensus 411 ~~--~~~i~~L~~lL-~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a 487 (528)
T 4b8j_A 411 VS--EGCIKPLCDLL-ICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487 (528)
T ss_dssp HH--TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHH
T ss_pred HH--CCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 21 36799999999 578999999999999999997665 68889999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy4828 437 LLAVQKLMV 445 (448)
Q Consensus 437 L~avQklm~ 445 (448)
...++++..
T Consensus 488 ~~il~~~~~ 496 (528)
T 4b8j_A 488 VKILEAYWM 496 (528)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHCC
Confidence 999998753
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.61 E-value=4.3e-14 Score=147.28 Aligned_cols=289 Identities=17% Similarity=0.212 Sum_probs=198.0
Q ss_pred hHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHH
Q psy4828 135 CSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIA 211 (448)
Q Consensus 135 ~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~ 211 (448)
.++++.+|.++|+.++..|+..|..|....+ .. ...+ ...+..|...|+++++..+..++.+|..+... ++.|..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~-~~-~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SA-KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCS-SH-HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HH-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4678999999999999999999999864222 11 1111 12345555666665556667789999999986 999999
Q ss_pred HHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhh--------hh---hhh-------
Q psy4828 212 FINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILS--------DS---VKE------- 273 (448)
Q Consensus 212 f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk--------~~---~KE------- 273 (448)
+.+.+|++.|+++|....+..++++++-++|-||.+++....+.+ |.||.|++++. .. .+|
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999998555778899999999999999888777877 99999999993 22 233
Q ss_pred -h------hcccCCCchhHHHHHHHHHHhc-chH-HHHHHHhc----CCCCChHHHHHHHHHHHH---HHHH--------
Q psy4828 274 -K------NLIEKPTEPALAKENCIAMVQS-KVL-KQLSILEQ----RKFDDEDIVEDVQFLNEK---LQAS-------- 329 (448)
Q Consensus 274 -K------NLl~~~~~~~~~~~~~~~mv~~-~~l-~~l~~L~~----rk~~Dedl~edl~~L~e~---L~~~-------- 329 (448)
. ||... + ++...|+++ |++ +++..|.. .++.+..+.+.+..|.+. ++..
T Consensus 161 ~~a~~aL~nLs~~-~------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 161 FNATGCLRNLSSA-D------AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp HHHHHHHHHHTTS-H------HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred HHHHHHHHHHccC-H------HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 2 66644 2 244578876 754 56666664 345555554444444432 1111
Q ss_pred ----------hhhcchHHHHHHHHhhCCcccCC-------CCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHH
Q psy4828 330 ----------VQDLSSFDEYKTEVKSGRLEWSP-------VHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLS 392 (448)
Q Consensus 330 ----------~~~lTsfDeY~~El~SG~L~WSP-------~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vla 392 (448)
....++|..+.+.+..+... .| +|..+.+| +.++++.|+.+|..+.++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~----------~~~~l~~L~~lL~~~~~~~~~e 302 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYD-CPLPEEETNPKGSGWLY----------HSDAIRTYLNLMGKSKKDATLE 302 (457)
T ss_dssp HHTC-----------------------------CCCCCSSCCGGGGGG----------SHHHHHHHHHHHHHCCCHHHHH
T ss_pred ccccccccccccccchhhccchhhhhcccc-CCccccccCchHHHHHh----------CcchHHHHHHHHhhcCCHHHHH
Confidence 11234565555554433211 23 34445566 4688999999998888999999
Q ss_pred HHHhhHhhHhhhCcc-----hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 393 VASYDIGEYVRHCPR-----GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 393 VAc~DIge~vr~~p~-----gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
-||-.|+.+++..+. +|.++.+.||...+++||.|+|++|+++|.+|++.|-
T Consensus 303 ~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls 359 (457)
T 1xm9_A 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359 (457)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHh
Confidence 999999999985432 2567778899999999999999999999999999774
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.60 E-value=2.5e-13 Score=150.67 Aligned_cols=332 Identities=13% Similarity=0.112 Sum_probs=228.2
Q ss_pred HHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhc
Q psy4828 64 TVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLN 143 (448)
Q Consensus 64 k~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~ 143 (448)
..+.....+.|..+++.++ +..++++|..........++...+..+......+.. +.+. ...++++.+|.
T Consensus 301 ~~La~~~~e~~~~i~~~~~---i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~-i~~~------g~l~~Ll~lL~ 370 (780)
T 2z6g_A 301 QILAYGNQESKLIILASGG---PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA-IVEA------GGMQALGLHLT 370 (780)
T ss_dssp HHHHTTCHHHHHHHHTTTH---HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHH-HHHT------THHHHHGGGTT
T ss_pred HHHhcCChHHHHHHHHcCC---HHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHH-HHHh------chHHHHHHHHc
Confidence 3333333456666666654 888999998855555666777777777765444443 4442 56788999999
Q ss_pred CCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccc-hhhHHHHhhcchhhHH
Q psy4828 144 GSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRID-EYRIAFINVDGIRTLL 222 (448)
Q Consensus 144 ~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~-~~R~~f~~~~gv~~L~ 222 (448)
+.+..+...|+.+|..|....+.. ......+..|...|.+.+......++.+|..+...+ +.|..+.+.+|++.|+
T Consensus 371 ~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv 447 (780)
T 2z6g_A 371 DPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 999999999999999998655321 223556667777776655566667889999988764 7888999999999999
Q ss_pred HhhccC-cchHHHHHHHHHHHHhhcCh-h---HHHhhhcCCCHHHHHHHhhhhhh----hh------hcccCCCchhHHH
Q psy4828 223 SVLSGR-VNFQIQYQLIFCLWVLTFNP-K---LADRMNKFNVIPTLADILSDSVK----EK------NLIEKPTEPALAK 287 (448)
Q Consensus 223 ~lL~~~-~~~Ql~Y~~ll~lWlLSF~~-~---~~~~l~~~~iI~~L~~ilk~~~K----EK------NLl~~~~~~~~~~ 287 (448)
.+|... ..-++++.++.+++-|+... + ....+...+.+|.|+++++.... +. ||...+.
T Consensus 448 ~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~------ 521 (780)
T 2z6g_A 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA------ 521 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH------
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH------
Confidence 999642 22378889999999998743 2 23345667889999999976532 22 6654321
Q ss_pred HHHHHHHhcchHH-HHHHHhcCCCCChHHHHHHH---------------HHHHHHHHHhhhcchHHHHHHHHhhCCcccC
Q psy4828 288 ENCIAMVQSKVLK-QLSILEQRKFDDEDIVEDVQ---------------FLNEKLQASVQDLSSFDEYKTEVKSGRLEWS 351 (448)
Q Consensus 288 ~~~~~mv~~~~l~-~l~~L~~rk~~Dedl~edl~---------------~L~e~L~~~~~~lTsfDeY~~El~SG~L~WS 351 (448)
+...+++.|+++ +++.|... +.++..... .+.+..-..+..|+...
T Consensus 522 -~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~-------------- 583 (780)
T 2z6g_A 522 -NHAPLREQGAIPRLVQLLVRA---HQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI-------------- 583 (780)
T ss_dssp -HHHHHHHTTHHHHHHHHHHHH---HHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--------------
T ss_pred -HHHHHHHCCCHHHHHHHHHhc---chhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--------------
Confidence 224677777654 44445431 222211000 01111111111222211
Q ss_pred CCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChh
Q psy4828 352 PVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPN 431 (448)
Q Consensus 352 P~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~e 431 (448)
+|...+.+ .+.++.|+++| .+.++.++..|+..|+.++.. |.++..+.+.||...+++|+.|+|++
T Consensus 584 ----------~~~~~l~~--~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~ 649 (780)
T 2z6g_A 584 ----------HNRIVIRG--LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEG 649 (780)
T ss_dssp ----------HHHHHHHH--TCCHHHHHHGG-GCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred ----------hhHHHHHH--CCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence 33333433 35789999999 578999999999999999865 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q psy4828 432 VRYEALLAVQKLMVH 446 (448)
Q Consensus 432 Vr~eAL~avQklm~~ 446 (448)
||+.|+.|+.++..+
T Consensus 650 Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 650 VATYAAAVLFRMSED 664 (780)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998754
No 6
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.60 E-value=1.9e-12 Score=135.88 Aligned_cols=352 Identities=14% Similarity=0.158 Sum_probs=243.3
Q ss_pred CCCchhHHhhCCCC-------HH-h--H-----HHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHH
Q psy4828 43 RPNWNTYQQSQMIS-------KE-D--Y-----DFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILV 107 (448)
Q Consensus 43 ~i~W~~~~ra~~is-------~~-d--~-----~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~ 107 (448)
..+++...++|.++ .. + + ..+..+-....+.+..++..+ .+..|+.+|++ +++++...++.
T Consensus 120 ~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g---~i~~Lv~lL~~-~~~~vr~~A~~ 195 (530)
T 1wa5_B 120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD---AVPLFIQLLYT-GSVEVKEQAIW 195 (530)
T ss_dssp SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHHHHHHH-CCHHHHHHHHH
T ss_pred CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC---CHHHHHHHHcC-CCHHHHHHHHH
Confidence 56777777776542 11 1 1 122233332233444444433 38889999987 78889999999
Q ss_pred HHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhc
Q psy4828 108 LIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLA 187 (448)
Q Consensus 108 li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~ 187 (448)
.+..+..+.+.....+... ...++++.+|.+++..++..|+..|..|................+..|...+..+
T Consensus 196 aL~~l~~~~~~~~~~~~~~------~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 269 (530)
T 1wa5_B 196 ALGNVAGDSTDYRDYVLQC------NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHT------TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC
T ss_pred HHHHHhCCCccchHHHHHc------CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC
Confidence 9999998877655555553 6688999999999999999999999999865522233333345666666677655
Q ss_pred CChhHHHHHHHHHHhhcc-chhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcC-hhHHHhhhcCCCHHHHHH
Q psy4828 188 NNDYMQSVARCLQMMLRI-DEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFN-PKLADRMNKFNVIPTLAD 265 (448)
Q Consensus 188 ~~~~~~~~~~~l~~lL~~-~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~iI~~L~~ 265 (448)
++.....++.+|..+... ++.+..+.+.++++.|+.+|.+ ....++..++.+++-++.. +.....+...|++|.|+.
T Consensus 270 d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 270 DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 555556678999998875 4567777888899999999964 3466777999999999875 455555666799999999
Q ss_pred Hhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHH-HHHHHhcCCCCChHHHHHHH-HHHHHHHHHhhhcc
Q psy4828 266 ILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLK-QLSILEQRKFDDEDIVEDVQ-FLNEKLQASVQDLS 334 (448)
Q Consensus 266 ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~-~l~~L~~rk~~Dedl~edl~-~L~e~L~~~~~~lT 334 (448)
+++.. +++. |+...++ +.+..+++.|+++ +++.|.. .|+++..... .|.+... ..
T Consensus 349 lL~~~~~~vr~~A~~aL~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~-~~---- 414 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTISNITAGNT------EQIQAVIDANLIPPLVKLLEV---AEYKTKKEACWAISNASS-GG---- 414 (530)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTSCH------HHHHHHHHTTCHHHHHHHHHH---SCHHHHHHHHHHHHHHHH-HT----
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCH------HHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHh-cC----
Confidence 99765 3333 6665432 2344677777655 4555543 2666654333 3333311 10
Q ss_pred hHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc-------
Q psy4828 335 SFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR------- 407 (448)
Q Consensus 335 sfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~------- 407 (448)
+ |. .++...+.+ .+++..|+++|. +.|+.+...|+.-|+.+++..|.
T Consensus 415 --~--------------~~-------~~~~~~l~~--~~~l~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~ 468 (530)
T 1wa5_B 415 --L--------------QR-------PDIIRYLVS--QGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGL 468 (530)
T ss_dssp --T--------------TC-------THHHHHHHH--TTCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --C--------------Cc-------HHHHHHHHH--CCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 0 00 022223322 458999999994 67999999999999999987654
Q ss_pred ----hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 408 ----GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 408 ----gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
....+.+.||.+.+..|+.|+|++|+..|..++.++..
T Consensus 469 ~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 469 NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp SSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred cccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 35678899999999999999999999999999988763
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.59 E-value=2.3e-12 Score=136.15 Aligned_cols=350 Identities=12% Similarity=0.156 Sum_probs=247.1
Q ss_pred cCCCCchhHHhhCCCCH-------Hh--------HHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHH
Q psy4828 41 NQRPNWNTYQQSQMISK-------ED--------YDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYI 105 (448)
Q Consensus 41 ~r~i~W~~~~ra~~is~-------~d--------~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyv 105 (448)
.+.+|.+...++|.|+. ++ +..+..+-....+.+..+++..+ +..|+.+|.+ +++++...+
T Consensus 107 ~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga---ip~Lv~LL~s-~~~~v~e~A 182 (529)
T 3tpo_A 107 EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLAS-PHAHISEQA 182 (529)
T ss_dssp SSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTC-SCHHHHHHH
T ss_pred CCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC---HHHHHHHHcC-CCHHHHHHH
Confidence 56889999999987641 11 11234444444445555665554 8889999988 788999999
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchh-----HHHHHHHHHHHHHhcccCCCChhhHHHHHHHH
Q psy4828 106 LVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGF-----IINMTAKIIAKIACWSVDLLNPSDLNFYLTWL 180 (448)
Q Consensus 106 L~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~-----I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l 180 (448)
+..+..|..+++..-..+.+. ...+|++.+|..++.- ....++..++.+.........-......+..|
T Consensus 183 ~~aL~nLa~~~~~~r~~i~~~------g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L 256 (529)
T 3tpo_A 183 VWALGNIAGAGSAFRDLVIKH------GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 256 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT------TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHc------CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHH
Confidence 999999999988777767775 6688999999876532 34556777777765444334445557777888
Q ss_pred HHHhhhcCChhHHHHHHHHHHhhccchh-hHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhc-ChhHHHhhhcCC
Q psy4828 181 KDQLKLANNDYMQSVARCLQMMLRIDEY-RIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF-NPKLADRMNKFN 258 (448)
Q Consensus 181 ~~~L~~~~~~~~~~~~~~l~~lL~~~~~-R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~ 258 (448)
...+.+++++....+..+|..+...+.. +..+...++++.|+.+|.+ ....++..++.+++-++. ++.....+...|
T Consensus 257 ~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC-CChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 8888776666677788999998887655 4566677888999999864 345667799999998865 456666677789
Q ss_pred CHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHH-HHHHHHHH
Q psy4828 259 VIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQ-FLNEKLQA 328 (448)
Q Consensus 259 iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~-~L~e~L~~ 328 (448)
++|.|+.+++.. +++. |+....+ +....++++|+++.|-.+.... |.++..... .|.+.
T Consensus 336 ~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~------~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl--- 404 (529)
T 3tpo_A 336 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ------DQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNY--- 404 (529)
T ss_dssp GGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH------HHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHH---
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH------HHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHH---
Confidence 999999999654 2222 7766543 2455678888766555444433 666654433 33333
Q ss_pred Hhhhcch--HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCc
Q psy4828 329 SVQDLSS--FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCP 406 (448)
Q Consensus 329 ~~~~lTs--fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p 406 (448)
++ -.+++..+.. .++++.|+++| ++.|+.++.+++.-|..+.+..+
T Consensus 405 -----~~~~~~~~~~~l~~--------------------------~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 405 -----TSGGTVEQIVYLVH--------------------------CGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp -----HHHSCHHHHHHHHH--------------------------TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HcCCCHHHHHHHHH--------------------------CcCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhH
Confidence 22 1223333322 56899999999 58899999999888877765432
Q ss_pred ------chhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 407 ------RGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 407 ------~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.-+..+++.||-+.|-+|..|+|++|+..|..-+.+..
T Consensus 453 ~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 453 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC
T ss_pred hccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 23457889999999999999999999999998887753
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.59 E-value=1.7e-12 Score=136.74 Aligned_cols=350 Identities=12% Similarity=0.170 Sum_probs=249.0
Q ss_pred cCCCCchhHHhhCCCCH-------H---hHH-----HHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHH
Q psy4828 41 NQRPNWNTYQQSQMISK-------E---DYD-----FITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYI 105 (448)
Q Consensus 41 ~r~i~W~~~~ra~~is~-------~---d~~-----~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyv 105 (448)
.+.+|.+...++|.|+. . +++ .+..+-.-+.+.+..+++..+ +..|+.+|++ +++++.+++
T Consensus 88 e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga---Ip~Lv~lL~s-~~~~v~e~A 163 (510)
T 3ul1_B 88 EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLAS-PHAHISEQA 163 (510)
T ss_dssp SSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH---HHHHHHHTTC-SCHHHHHHH
T ss_pred CCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC---HHHHHHHHcC-CCHHHHHHH
Confidence 47899999999987631 1 111 234444444556666776655 8899999987 889999999
Q ss_pred HHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchh-----HHHHHHHHHHHHHhcccCCCChhhHHHHHHHH
Q psy4828 106 LVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGF-----IINMTAKIIAKIACWSVDLLNPSDLNFYLTWL 180 (448)
Q Consensus 106 L~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~-----I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l 180 (448)
+..+..|..+.+.....+.+. ...+|++.+|..++.- ....++..++.+.........-......+..|
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~------G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L 237 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKH------GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT------TCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHc------CChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHH
Confidence 999999999988777767764 6678999999876532 34456677777765444334445556778888
Q ss_pred HHHhhhcCChhHHHHHHHHHHhhccchhh-HHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhc-ChhHHHhhhcCC
Q psy4828 181 KDQLKLANNDYMQSVARCLQMMLRIDEYR-IAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF-NPKLADRMNKFN 258 (448)
Q Consensus 181 ~~~L~~~~~~~~~~~~~~l~~lL~~~~~R-~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~ 258 (448)
...+.+++++....+..+|..+...+..+ ..+.+.++++.|+.+|.+ ....++..++.+++-++. ++.....+...|
T Consensus 238 ~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g 316 (510)
T 3ul1_B 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAG 316 (510)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC-CChhhhhHHHHHHHHhhcCCHHHHHHHhhcc
Confidence 88887766666677889999999876655 566677888999999864 345677799999998854 456666677789
Q ss_pred CHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHH-HHHHHHHH
Q psy4828 259 VIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQ-FLNEKLQA 328 (448)
Q Consensus 259 iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~-~L~e~L~~ 328 (448)
++|.|+.+++.. +++. |+...++. ....+++.|+++.|-.+.... |.++..... .|.+.
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~------~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl--- 385 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD------QIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNY--- 385 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHH---
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH------HHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHH---
Confidence 999999999654 2333 77665432 445678888776555555443 666655443 33332
Q ss_pred Hhhhcch--HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCc
Q psy4828 329 SVQDLSS--FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCP 406 (448)
Q Consensus 329 ~~~~lTs--fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p 406 (448)
++ -.+++..+.. .++++.|+++| ++.|+.++.+++.-|..+.+..+
T Consensus 386 -----~~~~~~~~~~~L~~--------------------------~g~i~~L~~LL-~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 386 -----TSGGTVEQIVYLVH--------------------------CGIIEPLMNLL-SAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp -----HHHCCHHHHHHHHH--------------------------TTCHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -----HccCCHHHHHHHHH--------------------------CCCHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhH
Confidence 22 1233333333 57899999999 58899999999888877766432
Q ss_pred ------chhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 407 ------RGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 407 ------~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
..+..+++.||-++|-+|..|+|++|+..|..-+.+..
T Consensus 434 ~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp TTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred hccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 23567889999999999999999999999998887653
No 9
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.59 E-value=4.8e-13 Score=144.45 Aligned_cols=334 Identities=12% Similarity=0.115 Sum_probs=233.1
Q ss_pred HHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhh
Q psy4828 62 FITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNL 141 (448)
Q Consensus 62 ~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~l 141 (448)
.+..+-....+.|..+.+.++ +..|+++|.+...+++...++..+..+......|.. +.+. ...++++++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~---v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~-l~~~------g~l~~L~~l 232 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGG---PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA-IVEA------GGMQALGLH 232 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTH---HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHH-HHHT------THHHHHHTT
T ss_pred HHHHHHhcCcHHHHHHHHcCC---hHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHH-HHHC------CCHHHHHHH
Confidence 344555445567777776665 889999999876677777888888887755444443 5553 578899999
Q ss_pred hcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHHHHhhcchhh
Q psy4828 142 LNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIAFINVDGIRT 220 (448)
Q Consensus 142 L~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~f~~~~gv~~ 220 (448)
|.+++..++..++.+|..|....+.. ......+..|...+++.+.+....+..+|..+... ++.|..+.+.++++.
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 99999999999999999997654322 23346677777777665556666788999988775 478999999999999
Q ss_pred HHHhhccC-cchHHHHHHHHHHHHhhcChh----HHHhhhcCCCHHHHHHHhhhhh----hhh------hcccCCCchhH
Q psy4828 221 LLSVLSGR-VNFQIQYQLIFCLWVLTFNPK----LADRMNKFNVIPTLADILSDSV----KEK------NLIEKPTEPAL 285 (448)
Q Consensus 221 L~~lL~~~-~~~Ql~Y~~ll~lWlLSF~~~----~~~~l~~~~iI~~L~~ilk~~~----KEK------NLl~~~~~~~~ 285 (448)
|+.+|... ....++..++.+++-|+.... ....+...+.+|.|+++++... ++. |+...+.
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---- 385 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 385 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence 99999642 225677799999999987522 2233556788999999998542 222 6665432
Q ss_pred HHHHHHHHHhcchHHH-HHHHhcCCCCChHHHHHH---------------HHHHHHHHHHhhhcchHHHHHHHHhhCCcc
Q psy4828 286 AKENCIAMVQSKVLKQ-LSILEQRKFDDEDIVEDV---------------QFLNEKLQASVQDLSSFDEYKTEVKSGRLE 349 (448)
Q Consensus 286 ~~~~~~~mv~~~~l~~-l~~L~~rk~~Dedl~edl---------------~~L~e~L~~~~~~lTsfDeY~~El~SG~L~ 349 (448)
+...+++.|+++. ++.|... +.++.... +.+.+..-..+..|+...+.+..+..
T Consensus 386 ---~~~~i~~~~~i~~Lv~lL~~~---~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---- 455 (644)
T 2z6h_A 386 ---NHAPLREQGAIPRLVQLLVRA---HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG---- 455 (644)
T ss_dssp ---GHHHHHHTTHHHHHHHHHHHH---HHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHH----
T ss_pred ---HHHHHHHcCCHHHHHHHHhcc---chhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHh----
Confidence 2246777776654 4444431 11111100 01111111222233333333333322
Q ss_pred cCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCC
Q psy4828 350 WSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHED 429 (448)
Q Consensus 350 WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d 429 (448)
.+.++.|+++| .+.++.++..|+.-|+.++++ |+++..+.+.||.+.+.+|+.|+|
T Consensus 456 ----------------------~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~ 511 (644)
T 2z6h_A 456 ----------------------LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRN 511 (644)
T ss_dssp ----------------------TTCHHHHHHHT-TCSCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred ----------------------CCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCC
Confidence 46889999999 578889999999999999875 999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcc
Q psy4828 430 PNVRYEALLAVQKLMVH 446 (448)
Q Consensus 430 ~eVr~eAL~avQklm~~ 446 (448)
++||..|..|+..|..+
T Consensus 512 ~~vr~~A~~aL~~l~~~ 528 (644)
T 2z6h_A 512 EGVATYAAAVLFRMSED 528 (644)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999887653
No 10
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.54 E-value=1.2e-11 Score=125.40 Aligned_cols=312 Identities=14% Similarity=0.158 Sum_probs=221.6
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcC-CchhHHHHHHHHHHHHHhc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNG-SDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~-~d~~I~~~a~~iLt~l~~~ 163 (448)
.+..|+.+|++ +++++...++..+..+..+.+.....+.+. ...++++.+|.+ ++..++..|+..|..|...
T Consensus 108 ~i~~L~~lL~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~------~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 108 AVPIFIELLSS-EFEDVQEQAVWALGNIAGDSTMCRDYVLDC------NILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHT------TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHC------CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 58889999987 678899999999999998877655555553 568899999996 6889999999999999865
Q ss_pred ccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHH
Q psy4828 164 SVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLW 242 (448)
Q Consensus 164 ~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lW 242 (448)
.............+..|...++.++......+..+|..+... ++.+..+.+.++++.|+.+|.+ ....++..++.+++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVG 259 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHH
Confidence 411122222344555566666654455556678999998885 4667777788889999998863 34677779999999
Q ss_pred HhhcChh-HHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHH-HHHhcCCCC
Q psy4828 243 VLTFNPK-LADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQL-SILEQRKFD 311 (448)
Q Consensus 243 lLSF~~~-~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l-~~L~~rk~~ 311 (448)
-++...+ ..+.+.+.|++|.|+.+++.. +++. |+...++ +....+++.++++.+ +.|.. .
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~------~~~~~~~~~~~l~~L~~~l~~-~-- 330 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR------AQIQTVIDANIFPALISILQT-A-- 330 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH------HHHHHHHHTTHHHHHHHHHHH-S--
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH------HHHHHHHHCCCHHHHHHHHhc-C--
Confidence 9987653 445556678999999999764 3333 6655432 134467777766544 45543 2
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHH
Q psy4828 312 DEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVL 391 (448)
Q Consensus 312 Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vl 391 (448)
|+++....-+.--.|.... -.+... .+- +.+++..|+++|+ +.|+.+.
T Consensus 331 ~~~v~~~a~~~L~~l~~~~-----~~~~~~------------------------~l~--~~~~i~~L~~ll~-~~~~~v~ 378 (450)
T 2jdq_A 331 EFRTRKEAAWAITNATSGG-----SAEQIK------------------------YLV--ELGCIKPLCDLLT-VMDSKIV 378 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHH------------------------HHH--HHTCHHHHHHGGG-SSCHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-----CHHHHH------------------------HHH--HCCCHHHHHHHhc-CCCHHHH
Confidence 6666554433322221110 011111 121 1468899999994 6789999
Q ss_pred HHHHhhHhhHhhhCcc-----------hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 392 SVASYDIGEYVRHCPR-----------GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 392 aVAc~DIge~vr~~p~-----------gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
..|+.-|+.+++..|. ....+.+.||-+++..|+.|+|++|+..|+.++.++..
T Consensus 379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999987543 23577888999999999999999999999999998764
No 11
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.52 E-value=3.9e-12 Score=132.48 Aligned_cols=338 Identities=13% Similarity=0.093 Sum_probs=227.8
Q ss_pred HHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHH
Q psy4828 60 YDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFL 139 (448)
Q Consensus 60 ~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl 139 (448)
+..|+.+-....+.|..+++..+ +..|+.+|++ +++++.......+..|...+++-...+.+. ...++|+
T Consensus 23 ~~~L~~l~~~~~~~~~~i~~~g~---i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~------G~i~~Lv 92 (457)
T 1xm9_A 23 AYYIQHTCFQDESAKQQVYQLGG---ICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETRRQ------NGIREAV 92 (457)
T ss_dssp HHHHHHHTSSCSSHHHHHHHTTH---HHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHT------TCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHcCC---HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHc------CCHHHHH
Confidence 44566665544456777887666 9999999997 778899999999999998744444445554 6789999
Q ss_pred hhhc-CCchhHHHHHHHHHHHHHhcccCCC--ChhhHHHHHHHHHHHh----hhc--------CChhHHHHHHHHHHhhc
Q psy4828 140 NLLN-GSDGFIINMTAKIIAKIACWSVDLL--NPSDLNFYLTWLKDQL----KLA--------NNDYMQSVARCLQMMLR 204 (448)
Q Consensus 140 ~lL~-~~d~~I~~~a~~iLt~l~~~~~~~~--~~~~l~~~l~~l~~~L----~~~--------~~~~~~~~~~~l~~lL~ 204 (448)
.+|. +++.-++..|+..|..|......+. -...++.++..|..-. .++ +......++.+|..+.+
T Consensus 93 ~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~ 172 (457)
T 1xm9_A 93 SLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS 172 (457)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTT
T ss_pred HHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHcc
Confidence 9999 7789999999999999986532111 0123344444441100 111 12334478999999999
Q ss_pred cchhhHHHHhh-cchhhHHHhhccC-----cchHHHHHHHHHHHHhhcChh-----------------------------
Q psy4828 205 IDEYRIAFINV-DGIRTLLSVLSGR-----VNFQIQYQLIFCLWVLTFNPK----------------------------- 249 (448)
Q Consensus 205 ~~~~R~~f~~~-~gv~~L~~lL~~~-----~~~Ql~Y~~ll~lWlLSF~~~----------------------------- 249 (448)
.+++|..+.+. ++++.|+.+|.+. .+....=+++.++|-|||..+
T Consensus 173 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (457)
T 1xm9_A 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSN 252 (457)
T ss_dssp SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------------
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhc
Confidence 99999999997 8899999988531 222222256667888887431
Q ss_pred ----------------------HHHhhhcCCCHHHHHHHhhhh----hhhh------hcccCCCchhHHHHHHHHHH-hc
Q psy4828 250 ----------------------LADRMNKFNVIPTLADILSDS----VKEK------NLIEKPTEPALAKENCIAMV-QS 296 (448)
Q Consensus 250 ----------------------~~~~l~~~~iI~~L~~ilk~~----~KEK------NLl~~~~~~~~~~~~~~~mv-~~ 296 (448)
..+.+...++|+.|+.+++.+ .+|. |+........ ...+..+| +.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~--~~~~~~~v~~~ 330 (457)
T 1xm9_A 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS--SGMSQLIGLKE 330 (457)
T ss_dssp -------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH--HHHHHHHHTTS
T ss_pred cchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch--HHHHHHHHHHc
Confidence 112233446789999999765 3444 7766543211 01112344 35
Q ss_pred chHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHH
Q psy4828 297 KVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLK 376 (448)
Q Consensus 297 ~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk 376 (448)
|+++.|-.|.... |+++......+-..|. .-+ +|...+. -+.++
T Consensus 331 ~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls-------~~~------------------------~~~~~i~---~~~i~ 374 (457)
T 1xm9_A 331 KGLPQIARLLQSG--NSDVVRSGASLLSNMS-------RHP------------------------LLHRVMG---NQVFP 374 (457)
T ss_dssp CCHHHHHHHTTCS--CHHHHHHHHHHHHHHH-------TSG------------------------GGHHHHH---HHTHH
T ss_pred CCchHHHHHHhCC--CHhHHHHHHHHHHHHh-------cCH------------------------HHHHHHH---HhhhH
Confidence 6555555444443 6676665555443332 211 1222222 25899
Q ss_pred HHHHhhccCCC------hhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCC-ChhHHHHHHHHHHHHhcc
Q psy4828 377 SLIHLLETSRD------PLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHE-DPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 377 ~L~~lL~~S~D------~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~~ 446 (448)
.|+++|. +.| +.++..||.-|+.++...|+....+.+.||-+++.+|+.|+ +++|++.|...++.+-.|
T Consensus 375 ~Lv~lL~-~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 375 EVTRLLT-SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHTTT-SCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHhcc-CCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcc
Confidence 9999995 443 36889999999999999999999999999999999999999 999999999999877654
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.50 E-value=4.1e-12 Score=137.13 Aligned_cols=330 Identities=11% Similarity=0.130 Sum_probs=229.7
Q ss_pred HHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHh
Q psy4828 61 DFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLN 140 (448)
Q Consensus 61 ~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~ 140 (448)
..+..+-... +.|..++... ..+..++++|.+..+.++...+...+..|..+...+.. +.+. ...++++.
T Consensus 36 ~~L~~La~~~-~~~~~i~~~~--~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~-i~~~------g~i~~Lv~ 105 (644)
T 2z6h_A 36 VMVHQLSKKE-ASRHAIMRSP--QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKS------GGIPALVK 105 (644)
T ss_dssp HHHHHHHTST-THHHHHTTCH--HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH-HHTT------THHHHHHH
T ss_pred HHHHHHHCCC-hhHHHHHhcc--ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH-HHHc------CCHHHHHH
Confidence 3444444432 2444454332 45888999998756788889999888877766544443 3332 67889999
Q ss_pred hhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhc-cchhhHHHHhhcc
Q psy4828 141 LLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLR-IDEYRIAFINVDG 217 (448)
Q Consensus 141 lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~-~~~~R~~f~~~~g 217 (448)
+|.++++.++..|+..|..|....+. ....+ ...+..|...|++++......++.||..+.. .++.|..+.+.+|
T Consensus 106 lL~~~~~~v~~~A~~aL~nL~~~~~~--~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~ 183 (644)
T 2z6h_A 106 MLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183 (644)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSTT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhCcch--hHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCC
Confidence 99999999999999999999875421 11111 2345556666665444444456788988885 8899999999999
Q ss_pred hhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHH
Q psy4828 218 IRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKE 288 (448)
Q Consensus 218 v~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~ 288 (448)
++.|+.+|.+...-+.++.++.++|.|+++++..+.+.+.|+||.|+.+++.. .++. ||....+...
T Consensus 184 v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~---- 259 (644)
T 2z6h_A 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---- 259 (644)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCC----
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhh----
Confidence 99999999876667889999999999999999999898889999999998764 2222 5544332211
Q ss_pred HHHHHHhcchHH-HHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhh
Q psy4828 289 NCIAMVQSKVLK-QLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367 (448)
Q Consensus 289 ~~~~mv~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf 367 (448)
.+ .++++ +++.|. .. |+++.++.....-.|... -+ +|...+
T Consensus 260 ----~~-~~~i~~Lv~lL~-~~--d~~v~~~a~~aL~~L~~~------~~------------------------~~~~~v 301 (644)
T 2z6h_A 260 ----GM-EGLLGTLVQLLG-SD--DINVVTCAAGILSNLTCN------NY------------------------KNKMMV 301 (644)
T ss_dssp ----SC-HHHHHHHHHHTT-CS--CHHHHHHHHHHHHHHHTT------CH------------------------HHHHHH
T ss_pred ----hh-hhHHHHHHHHHc-CC--CHHHHHHHHHHHHHHHcC------CH------------------------HHHHHH
Confidence 01 13334 444443 33 676666554433222111 01 122222
Q ss_pred hhhhHHHHHHHHHhhccCCC-hhHHHHHHhhHhhHhhhCcc---hhHHHHHhCcHHHHHhhhcCCC-hhHHHHHHHHHHH
Q psy4828 368 HEKNYELLKSLIHLLETSRD-PLVLSVASYDIGEYVRHCPR---GKHVIEQLGGKQLVMQLLSHED-PNVRYEALLAVQK 442 (448)
Q Consensus 368 ~e~~~~llk~L~~lL~~S~D-~~vlaVAc~DIge~vr~~p~---gr~il~~lg~K~~vM~Lm~h~d-~eVr~eAL~avQk 442 (448)
-+ .+.+..|+++|..+.+ +.+..-||.-||.++...|. .+..+.+.|+-..++++|.+++ ++|+++|+.+++.
T Consensus 302 ~~--~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~n 379 (644)
T 2z6h_A 302 CQ--VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 379 (644)
T ss_dssp HH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HH--cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHH
Confidence 22 4589999999965444 78999999999999987774 5666777899999999999885 7999999999998
Q ss_pred Hhcc
Q psy4828 443 LMVH 446 (448)
Q Consensus 443 lm~~ 446 (448)
|..+
T Consensus 380 La~~ 383 (644)
T 2z6h_A 380 LALC 383 (644)
T ss_dssp HTTS
T ss_pred HccC
Confidence 7643
No 13
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.49 E-value=1.1e-11 Score=137.93 Aligned_cols=315 Identities=11% Similarity=0.108 Sum_probs=225.4
Q ss_pred hHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHH
Q psy4828 83 GHAAKTFLNLLEHIS-KDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIA 161 (448)
Q Consensus 83 ~~~~~~~l~lL~~~~-~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~ 161 (448)
+..++.|+++|.+-+ ++++.+++...+..|..+.+.+.++..+. ...++++.+|.++|..++..|+.+|+.|.
T Consensus 376 ~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~------g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDK------ASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCH------HHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHcc------chHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 356888999999843 78999999999999988888887744332 56889999999999999999999999998
Q ss_pred hcccCC--------------------CCh---hhHH---------HHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhh
Q psy4828 162 CWSVDL--------------------LNP---SDLN---------FYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR 209 (448)
Q Consensus 162 ~~~~~~--------------------~~~---~~l~---------~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R 209 (448)
...... .+. +... ..+..|...++++++.....++.+|..+...+++|
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r 529 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELR 529 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 733110 000 1111 12333445566656667777999999999999999
Q ss_pred HHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcC--hhHHHhh-hcCCCHHHHHHHhhhhh-----hhh-----hc
Q psy4828 210 IAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFN--PKLADRM-NKFNVIPTLADILSDSV-----KEK-----NL 276 (448)
Q Consensus 210 ~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l-~~~~iI~~L~~ilk~~~-----KEK-----NL 276 (448)
..+.++++++.|+.+|.++. ...+-+++-++.=|+.+ ++.+-.. ...+.||+|+++|.... .|- ||
T Consensus 530 ~~Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NL 608 (810)
T 3now_A 530 GKVVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNL 608 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999996432 34455777777655543 3322111 11368999999997431 122 87
Q ss_pred ccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHH-HHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCC
Q psy4828 277 IEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE-DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHR 355 (448)
Q Consensus 277 l~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~ 355 (448)
...++ ++...++++|+++.|..|.... ++.+.. .+..|.++ ++-++..+.+..
T Consensus 609 a~~~d------~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NL--------a~~~~~~~~~v~---------- 662 (810)
T 3now_A 609 ASMNE------SVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNL--------VMSEDVIKMFEG---------- 662 (810)
T ss_dssp TTSCH------HHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHH--------TTSHHHHHHHHS----------
T ss_pred hcCCH------HHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHH--------hCChHHHHHHHh----------
Confidence 77653 2455788888776666655543 555544 45555555 333333333221
Q ss_pred ChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc-hhHHHHHhCcHHHHHhhhcCCChhHHH
Q psy4828 356 SAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR-GKHVIEQLGGKQLVMQLLSHEDPNVRY 434 (448)
Q Consensus 356 se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~-gr~il~~lg~K~~vM~Lm~h~d~eVr~ 434 (448)
+.+.++.|+.+| .+.|..+..-||--|+.+...+|. .+.+++.-|+-..+.+|+.|+|++||+
T Consensus 663 ---------------~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~ 726 (810)
T 3now_A 663 ---------------NNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726 (810)
T ss_dssp ---------------SSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHH
T ss_pred ---------------ccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHH
Confidence 136899999999 578999999999999999997675 556666579999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy4828 435 EALLAVQKLMVH 446 (448)
Q Consensus 435 eAL~avQklm~~ 446 (448)
+|++|+.-|..+
T Consensus 727 ~A~~aL~NL~~~ 738 (810)
T 3now_A 727 RGIVIILNMINA 738 (810)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC
Confidence 999999887643
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.48 E-value=1.1e-11 Score=128.40 Aligned_cols=331 Identities=11% Similarity=0.122 Sum_probs=230.8
Q ss_pred HHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHH
Q psy4828 60 YDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFL 139 (448)
Q Consensus 60 ~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl 139 (448)
+..+..+-.. .+.+..++... ..+..++++|.+.++.++....+..+..+..+...+.. +.+. ...++++
T Consensus 38 ~~~L~~l~~~-~~~~~~~~~~~--~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~-i~~~------g~i~~L~ 107 (529)
T 1jdh_A 38 AVMVHQLSKK-EASRHAIMRSP--QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA-IFKS------GGIPALV 107 (529)
T ss_dssp HHHHHHHHTS-HHHHHHHHTCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH-HHHT------THHHHHH
T ss_pred HHHHHHHHcC-CccHHHHHhCc--chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH-HHHc------CCHHHHH
Confidence 3344444432 23454555432 35888999998756788999999999998766544444 4443 6788999
Q ss_pred hhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhc-cchhhHHHHhhc
Q psy4828 140 NLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLR-IDEYRIAFINVD 216 (448)
Q Consensus 140 ~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~-~~~~R~~f~~~~ 216 (448)
.+|.++|+-++..|+..|..|....+. ....+ ...+..|...+++++......+..+|..+.. .+++|..+.+.+
T Consensus 108 ~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~ 185 (529)
T 1jdh_A 108 KMLGSPVDSVLFYAITTLHNLLLHQEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHCTT--HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCcc--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 999999999999999999999876431 11111 2344555566655444455556778887775 589999999999
Q ss_pred chhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHH
Q psy4828 217 GIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAK 287 (448)
Q Consensus 217 gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~ 287 (448)
|++.|+.+|.+...-..++.++.++|-|+.+++..+.+.+.|+||.|+++++.. .++. ||....+...
T Consensus 186 ~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--- 262 (529)
T 1jdh_A 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--- 262 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---
T ss_pred CHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---
Confidence 999999999766677888999999999999999888888889999999999764 2222 5544432211
Q ss_pred HHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchH-HHHHHHHhhCCcccCCCCCChhHHHhchhh
Q psy4828 288 ENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSF-DEYKTEVKSGRLEWSPVHRSAQFWRENAPR 366 (448)
Q Consensus 288 ~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsf-DeY~~El~SG~L~WSP~H~se~FW~EN~~k 366 (448)
.+ .++++.+-.|... .|+++....-..-..| +.- ++.+..
T Consensus 263 -----~~-~~~i~~L~~ll~~--~~~~v~~~a~~~L~~L-------~~~~~~~~~~------------------------ 303 (529)
T 1jdh_A 263 -----GM-EGLLGTLVQLLGS--DDINVVTCAAGILSNL-------TCNNYKNKMM------------------------ 303 (529)
T ss_dssp -----CC-HHHHHHHHHHTTC--SCHHHHHHHHHHHHHH-------TTTCHHHHHH------------------------
T ss_pred -----HH-HhHHHHHHHHHcC--CCHHHHHHHHHHHHHH-------hcCCHHHHHH------------------------
Confidence 01 2344444444333 3777766544333222 221 122222
Q ss_pred hhhhhHHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcch---hHHHHHhCcHHHHHhhhcCCC-hhHHHHHHHHHH
Q psy4828 367 LHEKNYELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRG---KHVIEQLGGKQLVMQLLSHED-PNVRYEALLAVQ 441 (448)
Q Consensus 367 f~e~~~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~g---r~il~~lg~K~~vM~Lm~h~d-~eVr~eAL~avQ 441 (448)
+-+ .+.+..|+++|..+ +++.+..-|+.-||.++...|.. |..+.+.|+-..++++|.+++ ++|+.+|++++.
T Consensus 304 ~~~--~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~ 381 (529)
T 1jdh_A 304 VCQ--VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 381 (529)
T ss_dssp HHH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHH--cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHH
Confidence 221 45889999999653 44888899999999999887763 667778899999999999987 599999999998
Q ss_pred HHhcc
Q psy4828 442 KLMVH 446 (448)
Q Consensus 442 klm~~ 446 (448)
.+..+
T Consensus 382 nl~~~ 386 (529)
T 1jdh_A 382 NLALC 386 (529)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 87643
No 15
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.47 E-value=2.5e-12 Score=120.99 Aligned_cols=226 Identities=22% Similarity=0.263 Sum_probs=171.2
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHhhc-cchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhc-ChhHHHh
Q psy4828 176 YLTWLKDQLKLANNDYMQSVARCLQMMLR-IDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF-NPKLADR 253 (448)
Q Consensus 176 ~l~~l~~~L~~~~~~~~~~~~~~l~~lL~-~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~ 253 (448)
.+.++...|++++++.+..++++|..++. .++.+..+.+.++++.|+++|.+.. ..++++++.+++-++. +++....
T Consensus 13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35566667777677777778899965444 7788889999999999999997543 7788899999999998 5777787
Q ss_pred hhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHH-HHH
Q psy4828 254 MNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQ-FLN 323 (448)
Q Consensus 254 l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~-~L~ 323 (448)
+.+.|.||.|+.+++.. +++. |+....+. ....+++.|+++.|-.+.... |+++....- .|.
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~ 163 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE------QIQAVIDAGALPALVQLLSSP--NEQILQEALWALS 163 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch------HHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 88889999999999764 3444 66554421 224677888766665555444 666655443 333
Q ss_pred HHHHHHhhhcch-HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHh
Q psy4828 324 EKLQASVQDLSS-FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYV 402 (448)
Q Consensus 324 e~L~~~~~~lTs-fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~v 402 (448)
+. +. .++....+.. .+++..|+++|. +.|+.+..-||.-|+.++
T Consensus 164 ~l--------~~~~~~~~~~~~~--------------------------~~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 164 NI--------ASGGNEQIQAVID--------------------------AGALPALVQLLS-SPNEQILQEALWALSNIA 208 (252)
T ss_dssp HH--------TTSCHHHHHHHHH--------------------------TTCHHHHHHGGG-CSSHHHHHHHHHHHHHHT
T ss_pred HH--------HcCChHHHHHHHH--------------------------CCCHHHHHHHHC-CCCHHHHHHHHHHHHHHh
Confidence 33 22 2233322222 468899999994 679999999999999999
Q ss_pred hhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 403 RHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 403 r~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
...|.++..+.+.|+-..++++|.++|++||.+|+.|+..|..
T Consensus 209 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 209 SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999987754
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.47 E-value=1.4e-11 Score=128.93 Aligned_cols=318 Identities=13% Similarity=0.114 Sum_probs=224.5
Q ss_pred HHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHH
Q psy4828 74 RAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMT 153 (448)
Q Consensus 74 r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a 153 (448)
+..++..+ .+..|+.+|.+-..+++...++..+..+....++....+.+. ...++|+.+|.++++-++..|
T Consensus 110 ~~~~~~~g---~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~------g~i~~L~~lL~~~~~~v~~~a 180 (528)
T 4b8j_A 110 IEEVIQSG---VVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH------GAVPIFVKLLGSSSDDVREQA 180 (528)
T ss_dssp HHHHHHTT---CHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC------CcHHHHHHHhcCCCHHHHHHH
Confidence 33444443 488899999884447888889999999998877666666664 678899999999999999999
Q ss_pred HHHHHHHHhcccCCCChhhHH--HHHHHHHHHh-hhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcc
Q psy4828 154 AKIIAKIACWSVDLLNPSDLN--FYLTWLKDQL-KLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVN 230 (448)
Q Consensus 154 ~~iLt~l~~~~~~~~~~~~l~--~~l~~l~~~L-~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~ 230 (448)
+..|..|...++. ....+. ..+..|...+ ..++......++.+|..+.+....+......++++.|+.+|.+ ..
T Consensus 181 ~~aL~~l~~~~~~--~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~-~~ 257 (528)
T 4b8j_A 181 VWALGNVAGDSPK--CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS-ND 257 (528)
T ss_dssp HHHHHHHHHTCHH--HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTC-CC
T ss_pred HHHHHHHhCCChh--hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCC-CC
Confidence 9999999764421 011111 1233444455 2334455667889999999886555555567788899998854 35
Q ss_pred hHHHHHHHHHHHHhhcChh-HHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHH
Q psy4828 231 FQIQYQLIFCLWVLTFNPK-LADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLK 300 (448)
Q Consensus 231 ~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~ 300 (448)
..++..++.++.-++.... ..+.+...|++|.|+.+++.. +++. |+....+ .....++.+|+++
T Consensus 258 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~------~~~~~~~~~~~l~ 331 (528)
T 4b8j_A 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDD------AQTQCIIDHQALP 331 (528)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH------HHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCH------HHHHHHHHhhhHH
Confidence 6777799999999997754 345566779999999999765 3444 6665432 1344677788766
Q ss_pred HHH-HHhcCCCCChHHHHHHHH-HHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHH
Q psy4828 301 QLS-ILEQRKFDDEDIVEDVQF-LNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSL 378 (448)
Q Consensus 301 ~l~-~L~~rk~~Dedl~edl~~-L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L 378 (448)
.|- .|.... ++++....-. |.+. .. .-++....+.. .+++..|
T Consensus 332 ~L~~lL~~~~--~~~v~~~A~~~L~nl-~~------~~~~~~~~~~~--------------------------~~~i~~L 376 (528)
T 4b8j_A 332 CLLSLLTQNL--KKSIKKEACWTISNI-TA------GNKDQIQAVIN--------------------------AGIIGPL 376 (528)
T ss_dssp HHHHHHHSCC--CHHHHHHHHHHHHHH-HT------SCHHHHHHHHH--------------------------TTCHHHH
T ss_pred HHHHHHcCCC--cHHHHHHHHHHHHHH-HC------CCHHHHHHHHH--------------------------CCCHHHH
Confidence 554 454432 5565544333 3332 11 11122222222 3678999
Q ss_pred HHhhccCCChhHHHHHHhhHhhHhhh-CcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 379 IHLLETSRDPLVLSVASYDIGEYVRH-CPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 379 ~~lL~~S~D~~vlaVAc~DIge~vr~-~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+++|. +.|+.+..-||.-|+.++.. .|..+..+-+.|+-..++++|.++|++|+..|+.++..|+.
T Consensus 377 ~~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 377 VNLLQ-TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHH-HSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 99995 56999999999999999998 67778888788999999999999999999999999998864
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.46 E-value=5e-11 Score=132.63 Aligned_cols=327 Identities=11% Similarity=0.059 Sum_probs=231.0
Q ss_pred hhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCC
Q psy4828 66 FDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGS 145 (448)
Q Consensus 66 ~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~ 145 (448)
+-....+.-..++...| .+..|+.++++ .++++...++..+.-+..+ +....++.+. . .+++..++.++
T Consensus 274 i~~g~~~~~~~~~~~~G--~v~~li~Ll~s-~~~~~q~~A~~al~~aa~~-~~~R~~I~~~------g-v~~L~~Ll~s~ 342 (810)
T 3now_A 274 LLNGPLDVGNQVVAREG--ILQMILAMATT-DDELQQRVACECLIAASSK-KDKAKALCEQ------G-VDILKRLYHSK 342 (810)
T ss_dssp HHSSSHHHHHHHHHTTT--HHHHHHHHHHS-SCHHHHHHHHHHHHHHTTS-HHHHHTTHHH------H-HHHHHHHTTCS
T ss_pred HhcCCHHHHHHHHhccc--hHHHHHHHhCC-CCHHHHHHHHHHHHHHcCC-cHHHHHHHHc------C-cHHHHHHHcCC
Confidence 33334444445554443 57888999988 6667777888888887666 6666667664 2 37889999988
Q ss_pred chhHHHHHHHHHHHHHhccc-----CCCChhhHHHHHHHHHHHhhhc--CChhHHHHHHHHHHhhccchhhHHHHh-hcc
Q psy4828 146 DGFIINMTAKIIAKIACWSV-----DLLNPSDLNFYLTWLKDQLKLA--NNDYMQSVARCLQMMLRIDEYRIAFIN-VDG 217 (448)
Q Consensus 146 d~~I~~~a~~iLt~l~~~~~-----~~~~~~~l~~~l~~l~~~L~~~--~~~~~~~~~~~l~~lL~~~~~R~~f~~-~~g 217 (448)
+..++..|+-.|.++...+. ..+....++.++..+...|.++ +++....++.+|..|-..++.|..+.. .++
T Consensus 343 ~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~ 422 (810)
T 3now_A 343 NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKAS 422 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccch
Confidence 99999999999999975432 2234445777777787777765 677888999999999999999999886 467
Q ss_pred hhhHHHhhccCcchHHHHHHHHHHHHhhcChh------------------------------H---HHhhhcCCCHHHHH
Q psy4828 218 IRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPK------------------------------L---ADRMNKFNVIPTLA 264 (448)
Q Consensus 218 v~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~------------------------------~---~~~l~~~~iI~~L~ 264 (448)
++.|+++|++ ....++|.++-++-=++-..+ . ++.+.+.|.||.|+
T Consensus 423 Ip~LV~LL~s-~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV 501 (810)
T 3now_A 423 IHALMDLARG-GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALC 501 (810)
T ss_dssp HHHHHHHHHT-TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHH
Confidence 8999999974 357899999999988886321 1 13445679999999
Q ss_pred HHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchH-HHHHHHhcCCCCChH-HHHHHHHHHHHHHHHhhhc
Q psy4828 265 DILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVL-KQLSILEQRKFDDED-IVEDVQFLNEKLQASVQDL 333 (448)
Q Consensus 265 ~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l-~~l~~L~~rk~~Ded-l~edl~~L~e~L~~~~~~l 333 (448)
.+++.. ++|. |+.... ++...++++|++ +++..|... +++ ..+....|.+.....
T Consensus 502 ~LL~s~s~~vqe~Aa~aL~NLA~d~-------~~r~~Vv~~Gaip~Lv~LL~s~---~~~~k~~Aa~AL~nL~~~~---- 567 (810)
T 3now_A 502 ALAKTESHNSQELIARVLNAVCGLK-------ELRGKVVQEGGVKALLRMALEG---TEKGKRHATQALARIGITI---- 567 (810)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHTSH-------HHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHS----
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCH-------HHHHHHHHCCCHHHHHHHHccC---CHHHHHHHHHHHHHHhcCC----
Confidence 999753 5666 775431 244578888865 566666543 333 233333443331100
Q ss_pred chHHHHHHHHhhCCcccCCCCCChhHHHhchhhhh-hhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHH
Q psy4828 334 SSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLH-EKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVI 412 (448)
Q Consensus 334 TsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~-e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il 412 (448)
+ +..-|. ..-.+.++.|+++|....+.....-||--|+-++.+-++.+..+
T Consensus 568 ----------------------~------p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~I 619 (810)
T 3now_A 568 ----------------------N------PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRI 619 (810)
T ss_dssp ----------------------C------HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ----------------------C------hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 0 000011 11246899999999532344445569999999999866777777
Q ss_pred HHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 413 EQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 413 ~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
-+-||-.++++||.|+++.|+..|+.|+..|+.+
T Consensus 620 i~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 620 IKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp HHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 7789999999999999999999999999998764
No 18
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.44 E-value=4.4e-11 Score=125.44 Aligned_cols=346 Identities=12% Similarity=0.135 Sum_probs=225.4
Q ss_pred hHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccCh-----------hhHHHHHHHHHHHHHhhchhHHHHHHHhh
Q psy4828 59 DYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISK-----------DSTIQYILVLIDDILQEDRSRVEIFKEYS 127 (448)
Q Consensus 59 d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~-----------~d~vqyvL~li~dll~~~~~~~~~f~~~~ 127 (448)
-+..+-.++..+ +-|..+.+.. ++..|+.+|....+ +++..+....+..+....|+-...-.+..
T Consensus 49 ~~~~ll~~~~~~-~~~~~~~~~g---~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~ 124 (458)
T 3nmz_A 49 MSRTLLAMSSSQ-DSCISMRQSG---CLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIR 124 (458)
T ss_dssp HHHHHHHHHSST-THHHHHHHHT---CHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHH
T ss_pred HHHHHHHHHcCC-cHHHHHHHCC---CHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHH
Confidence 334455555533 2455565443 58899999997533 68888889999999987763332211110
Q ss_pred hc----CCCchhHHHHhhhcCCc-------hhHHH-------HHHHHHHHHHhcccCCC---ChhhHHHHHHHHHHHhhh
Q psy4828 128 QT----KREPVCSQFLNLLNGSD-------GFIIN-------MTAKIIAKIACWSVDLL---NPSDLNFYLTWLKDQLKL 186 (448)
Q Consensus 128 ~~----~~~~~~~~fl~lL~~~d-------~~I~~-------~a~~iLt~l~~~~~~~~---~~~~l~~~l~~l~~~L~~ 186 (448)
-. +-...-..|++++.+.. .++++ .|...|.++..+...|. ....++.++..|......
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~ 204 (458)
T 3nmz_A 125 VLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM 204 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcc
Confidence 00 00111233677777642 12444 77788888743221110 122345666666422110
Q ss_pred -------cCChhHHHHHHHHHHhhccch-hhHHHHhhcc-hhhHHHhhccCcchHHHHHHHHHHHHhhcC--hhHHHhhh
Q psy4828 187 -------ANNDYMQSVARCLQMMLRIDE-YRIAFINVDG-IRTLLSVLSGRVNFQIQYQLIFCLWVLTFN--PKLADRMN 255 (448)
Q Consensus 187 -------~~~~~~~~~~~~l~~lL~~~~-~R~~f~~~~g-v~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~ 255 (448)
.+...+..++.+|..+.+.++ .|..+...+| ++.|+.+|.+ .+..++.+++.+++-||+. ++....+.
T Consensus 205 ~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~I~ 283 (458)
T 3nmz_A 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLR 283 (458)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 113356678999999998776 6666666677 9999999974 3456677999999999995 56667777
Q ss_pred cCCCHHHHHHHhhhh----hhhh------hcccCCCchhHHHHHHHHHH-hcchHHHHHHHhcCCCCCh---HHHHHH-H
Q psy4828 256 KFNVIPTLADILSDS----VKEK------NLIEKPTEPALAKENCIAMV-QSKVLKQLSILEQRKFDDE---DIVEDV-Q 320 (448)
Q Consensus 256 ~~~iI~~L~~ilk~~----~KEK------NLl~~~~~~~~~~~~~~~mv-~~~~l~~l~~L~~rk~~De---dl~edl-~ 320 (448)
+.|.||.|+++|..+ .+|. ||...+.+ +...++ .+|+++.|-.|....- |. ++.++. .
T Consensus 284 ~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~------nk~~I~~~~Gal~~Lv~LL~~~~-~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE------NKADICAVDGALAFLVGTLTYRS-QTNTLAIIESGGG 356 (458)
T ss_dssp HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHH------HHHHHHHSTTHHHHHHHHTTCCC-SSSTTHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHH------HHHHHHHhcCcHHHHHHHhcCCC-CcchHHHHHHHHH
Confidence 889999999986443 3443 66552321 233555 5676665554443331 32 455443 3
Q ss_pred HHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhh
Q psy4828 321 FLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGE 400 (448)
Q Consensus 321 ~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge 400 (448)
.|.+. ... ++.-++++..+.. .+.+..|+++| .+.+..+..-||--|+.
T Consensus 357 aL~nL-s~~---~a~~~~~~~~i~~--------------------------~G~i~~Lv~LL-~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 357 ILRNV-SSL---IATNEDHRQILRE--------------------------NNCLQTLLQHL-KSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHHHH-HHH---HTTCHHHHHHHHH--------------------------TTHHHHHHHHS-SCSCHHHHHHHHHHHHH
T ss_pred HHHHH-Hhc---ccCCHHHHHHHHH--------------------------cccHHHHHHHH-cCCChHHHHHHHHHHHH
Confidence 34333 110 1135677777666 67899999999 57788899999999999
Q ss_pred HhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhccC
Q psy4828 401 YVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 401 ~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 447 (448)
++...|+.+..+-+.|+-..+.+||.+++++||.+|+.|+.-|..+|
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99777999999999999999999999999999999999999988764
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.44 E-value=1.4e-11 Score=114.70 Aligned_cols=223 Identities=19% Similarity=0.235 Sum_probs=169.0
Q ss_pred HHHhhhcCChhHHHHHHHHHHhhccch-hhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcC-hhHHHhhhcCC
Q psy4828 181 KDQLKLANNDYMQSVARCLQMMLRIDE-YRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFN-PKLADRMNKFN 258 (448)
Q Consensus 181 ~~~L~~~~~~~~~~~~~~l~~lL~~~~-~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~ 258 (448)
...|++++.+....++.+|..+..... +|..+.+.++++.|+++|.+. +..++.+++.+++-++.+ ++..+.+.+.|
T Consensus 8 ~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 86 (252)
T 4hxt_A 8 VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAG 86 (252)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCC
Confidence 334444444555568899999887765 999999999999999999753 377888999999999998 77888888889
Q ss_pred CHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHH-HHHHHHHHH
Q psy4828 259 VIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDV-QFLNEKLQA 328 (448)
Q Consensus 259 iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl-~~L~e~L~~ 328 (448)
+||.|+.+++.. +++. |+....+ ++...+++.|+++.|-.+.... |+++.... ..|.+.
T Consensus 87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l--- 155 (252)
T 4hxt_A 87 GVEVLVKLLTSTDSEVQKEAARALANIASGPD------EAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANI--- 155 (252)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH------HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH------HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHH---
Confidence 999999999754 3333 6664432 2455677888776665555544 55554433 333332
Q ss_pred Hhhhcch-HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc
Q psy4828 329 SVQDLSS-FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR 407 (448)
Q Consensus 329 ~~~~lTs-fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~ 407 (448)
+. .++....+.. .+++..|+++| .+.|+.+..-||.-|+.++...|.
T Consensus 156 -----~~~~~~~~~~~~~--------------------------~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~ 203 (252)
T 4hxt_A 156 -----ASGPDEAIKAIVD--------------------------AGGVEVLVKLL-TSTDSEVQKEAARALANIASGPTS 203 (252)
T ss_dssp -----TTSCHHHHHHHHH--------------------------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSBHH
T ss_pred -----HcCCHHHHHHHHH--------------------------CcCHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 32 2222222222 57899999999 478899999999999999998899
Q ss_pred hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhccC
Q psy4828 408 GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 408 gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 447 (448)
.+..+.+.|+-..+++++.++|++||.+|+.|+..|..+.
T Consensus 204 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 204 AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999987653
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.44 E-value=2.4e-11 Score=123.11 Aligned_cols=307 Identities=15% Similarity=0.112 Sum_probs=213.0
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHh--hchhHHHHHHHhhhcCCCchhHHHHhhhcCC-chhHHHHHHHHHHHHHh
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQ--EDRSRVEIFKEYSQTKREPVCSQFLNLLNGS-DGFIINMTAKIIAKIAC 162 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~--~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~-d~~I~~~a~~iLt~l~~ 162 (448)
+..+++.|++ +++++....+..+..++. .++.... ..+ .....++++.+|.++ ++.++..|+.+|+.+..
T Consensus 22 l~~l~~~l~s-~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~-----~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDE-VIS-----TPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHS-SCHHHHHHHHHHHHHHHHSSSSCCHHH-HHT-----STTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHH-HHH-----cCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 5567888865 677888999999998875 3333222 222 125678899999998 88999999999999986
Q ss_pred cccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHHHHhhcchhhHHHhhccCcchHHHHHHHH
Q psy4828 163 WSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIF 239 (448)
Q Consensus 163 ~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll 239 (448)
..+.. ...+ ...+..|...|+++++.....++.+|..+... +++|..+.+.++++.|+.+|.+..+..++..++.
T Consensus 95 ~~~~~--~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~ 172 (450)
T 2jdq_A 95 GNSLQ--TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVW 172 (450)
T ss_dssp SCHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred CCHHH--HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHH
Confidence 43210 0111 23455566666665555666788999998876 4789999999999999999986566778889999
Q ss_pred HHHHhhcCh--hHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcC
Q psy4828 240 CLWVLTFNP--KLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQR 308 (448)
Q Consensus 240 ~lWlLSF~~--~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~r 308 (448)
+++-++... .....+. .+++|.|+.+++.. +++. |+....+ +....++..++++.|-.+...
T Consensus 173 ~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~~~i~~L~~ll~~ 245 (450)
T 2jdq_A 173 ALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN------DKIQAVIDAGVCRRLVELLMH 245 (450)
T ss_dssp HHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH------HHHHHHHHTTTHHHHHHHTTC
T ss_pred HHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc------HHHHHHHHcCcHHHHHHHHCC
Confidence 999998764 2222223 57899999999743 2333 5554432 133456666765544444433
Q ss_pred CCCChHHHHHH-HHHHHHHHHHhhhcchH-HHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCC
Q psy4828 309 KFDDEDIVEDV-QFLNEKLQASVQDLSSF-DEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSR 386 (448)
Q Consensus 309 k~~Dedl~edl-~~L~e~L~~~~~~lTsf-DeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~ 386 (448)
. |+++.... ..|.+. ++- ++....+. +.+++..|+++|. +.
T Consensus 246 ~--~~~v~~~a~~~L~~l--------~~~~~~~~~~~~--------------------------~~~~l~~L~~ll~-~~ 288 (450)
T 2jdq_A 246 N--DYKVVSPALRAVGNI--------VTGDDIQTQVIL--------------------------NCSALQSLLHLLS-SP 288 (450)
T ss_dssp S--CHHHHHHHHHHHHHH--------TTSCHHHHHHHH--------------------------TTTHHHHHHHHTT-CS
T ss_pred C--chhHHHHHHHHHHHH--------hhCChHHHHHHH--------------------------HCccHHHHHHHHc-CC
Confidence 3 66655433 333322 221 11111111 1368999999995 67
Q ss_pred ChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 387 DPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 387 D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
++.+..-||.-||.++...|..+..+-+.|+-..++++|.+++++||++|+.|+..+..
T Consensus 289 ~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 289 KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999878877777777999999999999999999999999998864
No 21
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.43 E-value=2.7e-11 Score=127.60 Aligned_cols=316 Identities=15% Similarity=0.168 Sum_probs=223.0
Q ss_pred HHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHH
Q psy4828 74 RAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMT 153 (448)
Q Consensus 74 r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a 153 (448)
...+++..+ +..|+.+|++..++++...+...+..|....++....+.+. ...++|+.+|.+++.-++..|
T Consensus 93 i~~ii~~G~---ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~------GaIp~Lv~lL~s~~~~v~e~A 163 (510)
T 3ul1_B 93 IDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG------GAIPAFISLLASPHAHISEQA 163 (510)
T ss_dssp HHHHHHTTH---HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC------CCHHHHHHHHcCCCHHHHHHH
Confidence 446776655 89999999986667888888889999988888777777775 678899999999999999999
Q ss_pred HHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcC-----ChhHHHHHHHHHHhhccchhhHHHHh-hcchhhHHHhh
Q psy4828 154 AKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLAN-----NDYMQSVARCLQMMLRIDEYRIAFIN-VDGIRTLLSVL 225 (448)
Q Consensus 154 ~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~-----~~~~~~~~~~l~~lL~~~~~R~~f~~-~~gv~~L~~lL 225 (448)
+..|..|..+++.. .+.+ ...+..|...+..++ ......++.++..+.+.+..+..+.. .++++.|+.+|
T Consensus 164 ~~aL~nLa~d~~~~--r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL 241 (510)
T 3ul1_B 164 VWALGNIAGDGSAF--RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241 (510)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHH--HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH
Confidence 99999998654311 0101 011223333443322 12345678899999887755544433 45667788887
Q ss_pred ccCcchHHHHHHHHHHHHhhcChhH-HHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHh
Q psy4828 226 SGRVNFQIQYQLIFCLWVLTFNPKL-ADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQ 295 (448)
Q Consensus 226 ~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~ 295 (448)
.+ ....++..++.|++-|+..+.- .+.+...|++|.|+++++.. +++. |+..... .....+++
T Consensus 242 ~~-~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~------~~~~~i~~ 314 (510)
T 3ul1_B 242 HH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD------EQTQKVID 314 (510)
T ss_dssp TC-SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH------HHHHHHHH
T ss_pred hc-CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH------HHHHHHhh
Confidence 54 3456777999999999987654 44456779999999999754 3333 7665543 24457888
Q ss_pred cchHHHHHHHhcCCCCChHHHHHHHH-HHHHHHHHhhhcch-HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHH
Q psy4828 296 SKVLKQLSILEQRKFDDEDIVEDVQF-LNEKLQASVQDLSS-FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYE 373 (448)
Q Consensus 296 ~~~l~~l~~L~~rk~~Dedl~edl~~-L~e~L~~~~~~lTs-fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~ 373 (448)
+|+++.|-.|.... ++++.....+ |.+. +. -.++...+.. ..
T Consensus 315 ~g~l~~L~~LL~~~--~~~v~~~A~~aL~nl--------~a~~~~~~~~v~~--------------------------~g 358 (510)
T 3ul1_B 315 AGALAVFPSLLTNP--KTNIQKEATWTMSNI--------TAGRQDQIQQVVN--------------------------HG 358 (510)
T ss_dssp TTGGGGCC-CTTCS--SHHHHHHHHHHHHHH--------TTSCHHHHHHHHH--------------------------TT
T ss_pred ccchHHHHHHhcCC--CHHHHHHHHHHHHHH--------HcCcHHHHHHHHh--------------------------cC
Confidence 88777665555443 5665544333 2222 22 2223333333 46
Q ss_pred HHHHHHHhhccCCChhHHHHHHhhHhhHhhhC-cchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHC-PRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 374 llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~-p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
++..|+++| .+.|+.+..-||.-|+.++... ++-+..+-+.|+-..+++|+.++|++|+..||.|+..|+
T Consensus 359 ~i~~Lv~lL-~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 359 LVPFLVGVL-SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp HHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 899999999 5788999999999999999863 455566778899999999999999999999999998876
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.43 E-value=3.5e-11 Score=126.25 Aligned_cols=309 Identities=12% Similarity=0.115 Sum_probs=219.0
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWS 164 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~ 164 (448)
.+..|+.+|.+-.++++...++..+..+....+.....+.+. ...++|+.+|.++++-++..|+..|..|...+
T Consensus 131 ~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~------g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~ 204 (530)
T 1wa5_B 131 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA------DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 204 (530)
T ss_dssp CHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT------TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC------CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 488899999884467888888999999998777666656553 56889999999999999999999999998643
Q ss_pred cCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhccc-hhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHH
Q psy4828 165 VDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRID-EYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCL 241 (448)
Q Consensus 165 ~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~-~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~l 241 (448)
+.. .+.+ ...+..|...+..++......++.+|..+.+.+ ..+......++++.|+.+|.+. +..++..++.++
T Consensus 205 ~~~--~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L 281 (530)
T 1wa5_B 205 TDY--RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAI 281 (530)
T ss_dssp HHH--HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred ccc--hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 210 0000 123444555555444456667889999999876 5555556677889999988643 467788999999
Q ss_pred HHhhcCh-hHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCC
Q psy4828 242 WVLTFNP-KLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFD 311 (448)
Q Consensus 242 WlLSF~~-~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~ 311 (448)
.-|+... +..+.+.+.+++|.|+.+++.. +++. |+....+. ....++..|+++.|-.+....
T Consensus 282 ~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~lL~~~-- 353 (530)
T 1wa5_B 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL------QTQVVINAGVLPALRLLLSSP-- 353 (530)
T ss_dssp HHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH------HHHHHHHTTHHHHHHHHTTCS--
T ss_pred HHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH------HHHHHHHcchHHHHHHHHcCC--
Confidence 9999764 5566666779999999999754 2333 66554321 234567778776665555444
Q ss_pred ChHHHHH-HHHHHHHHHHHhhhcchH-HHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChh
Q psy4828 312 DEDIVED-VQFLNEKLQASVQDLSSF-DEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPL 389 (448)
Q Consensus 312 Dedl~ed-l~~L~e~L~~~~~~lTsf-DeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~ 389 (448)
++++... +..|.+. +.. .+....+.. .+++..|+++| .+.++.
T Consensus 354 ~~~vr~~A~~aL~~l--------~~~~~~~~~~~~~--------------------------~~~l~~L~~lL-~~~~~~ 398 (530)
T 1wa5_B 354 KENIKKEACWTISNI--------TAGNTEQIQAVID--------------------------ANLIPPLVKLL-EVAEYK 398 (530)
T ss_dssp CHHHHHHHHHHHHHH--------TTSCHHHHHHHHH--------------------------TTCHHHHHHHH-HHSCHH
T ss_pred CHHHHHHHHHHHHHH--------HcCCHHHHHHHHH--------------------------CCCHHHHHHHH-hcCCHH
Confidence 5555443 3333333 211 112222211 35789999999 467899
Q ss_pred HHHHHHhhHhhHhhhC-c--chhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 390 VLSVASYDIGEYVRHC-P--RGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 390 vlaVAc~DIge~vr~~-p--~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+...||.-|+.++... | +....+-+.|+-..+..++.++|++|+..|+.|+..++.
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999874 3 455555578999999999999999999999999998864
No 23
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.42 E-value=7.3e-11 Score=124.62 Aligned_cols=316 Identities=15% Similarity=0.164 Sum_probs=222.3
Q ss_pred HHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHH
Q psy4828 74 RAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMT 153 (448)
Q Consensus 74 r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a 153 (448)
...+++..+ +..|+++|+...++++...+.-.+..+....+.....+.+. ...++|+.+|.+++.-++..|
T Consensus 112 i~~ii~~G~---ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~------Gaip~Lv~LL~s~~~~v~e~A 182 (529)
T 3tpo_A 112 IDNIIRAGL---IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG------GAIPAFISLLASPHAHISEQA 182 (529)
T ss_dssp HHHHHHTTH---HHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHCCC---HHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC------CCHHHHHHHHcCCCHHHHHHH
Confidence 345665554 88999999886778888889999999998888777777775 678899999999999999999
Q ss_pred HHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcC-----ChhHHHHHHHHHHhhccchhhHHHH-hhcchhhHHHhh
Q psy4828 154 AKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLAN-----NDYMQSVARCLQMMLRIDEYRIAFI-NVDGIRTLLSVL 225 (448)
Q Consensus 154 ~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~-----~~~~~~~~~~l~~lL~~~~~R~~f~-~~~gv~~L~~lL 225 (448)
+..|..|...++.. .+.+ ...+..|...|..++ ......++.++..+.+.+.....+. ..++++.|+.+|
T Consensus 183 ~~aL~nLa~~~~~~--r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL 260 (529)
T 3tpo_A 183 VWALGNIAGAGSAF--RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260 (529)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCHHH--HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh
Confidence 99999998654310 0100 011222333333221 1234567889999988876554443 345677888888
Q ss_pred ccCcchHHHHHHHHHHHHhhcChh-HHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHh
Q psy4828 226 SGRVNFQIQYQLIFCLWVLTFNPK-LADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQ 295 (448)
Q Consensus 226 ~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~ 295 (448)
.+ ....++..++.|+.-++..+. ..+.+...|++|.|+++++.. +++. |+...++ .....++.
T Consensus 261 ~~-~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~------~~~~~i~~ 333 (529)
T 3tpo_A 261 HH-NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD------EQTQKVID 333 (529)
T ss_dssp TS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH------HHHHHHHH
T ss_pred cC-CcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch------HHHHHHhh
Confidence 54 245666788888888887664 444456779999999999754 3333 7765543 23456888
Q ss_pred cchHHHHHHHhcCCCCChHHHHHHH-HHHHHHHHHhhhcch-HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHH
Q psy4828 296 SKVLKQLSILEQRKFDDEDIVEDVQ-FLNEKLQASVQDLSS-FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYE 373 (448)
Q Consensus 296 ~~~l~~l~~L~~rk~~Dedl~edl~-~L~e~L~~~~~~lTs-fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~ 373 (448)
+|+++.|-.|.... ++++..... .|.+. +. -.++...+.. .+
T Consensus 334 ~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl--------~~~~~~~~~~v~~--------------------------~g 377 (529)
T 3tpo_A 334 AGALAVFPSLLTNP--KTNIQKEATWTMSNI--------TAGRQDQIQQVVN--------------------------HG 377 (529)
T ss_dssp TTGGGGHHHHTTCS--SHHHHHHHHHHHHHH--------HTSCHHHHHHHHH--------------------------TT
T ss_pred cccHHHHHHHHcCC--CHHHHHHHHHHHHHH--------hcccHHHHHHHHh--------------------------cC
Confidence 88777666665543 666654433 33322 22 1223333333 57
Q ss_pred HHHHHHHhhccCCChhHHHHHHhhHhhHhhhC-cchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHC-PRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 374 llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~-p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
++..|+.+| .+.++.+..-||.-|+.++... |+-+..+-+.|+-..+++||.++|++|+..||.|+..|+
T Consensus 378 ~i~~Lv~lL-~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 378 LVPFLVGVL-SKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 899999999 5788899999999999999863 456666778899999999999999999999999998876
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.33 E-value=2.9e-10 Score=119.20 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=194.7
Q ss_pred HHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCc------------hhHHHHHHHHHHHHHhcccCCCChh----hH--
Q psy4828 112 ILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSD------------GFIINMTAKIIAKIACWSVDLLNPS----DL-- 173 (448)
Q Consensus 112 ll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d------------~~I~~~a~~iLt~l~~~~~~~~~~~----~l-- 173 (448)
|-..-|.|...... ..++.|+.+|+++| +-.+..|+..|+.|+...++..... .+
T Consensus 56 ~~~~~~~~~~~~~~-------g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~ 128 (458)
T 3nmz_A 56 MSSSQDSCISMRQS-------GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHL 128 (458)
T ss_dssp HHSSTTHHHHHHHH-------TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHC-------CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence 33444555654333 78999999999754 5899999999999998765432110 11
Q ss_pred --------HHHHHHHHHHhhhcC--Ch-----h-------HHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhcc----
Q psy4828 174 --------NFYLTWLKDQLKLAN--ND-----Y-------MQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSG---- 227 (448)
Q Consensus 174 --------~~~l~~l~~~L~~~~--~~-----~-------~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~---- 227 (448)
..|+.|+. ++. .+ . .--++.+|..+...+++|..+.+.+|++.|+.+|..
T Consensus 129 l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~ 204 (458)
T 3nmz_A 129 LEQIRAYCETCWEWQE----AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEM 204 (458)
T ss_dssp HHHHHHHHHHHHHHHT----TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHH----hhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcc
Confidence 12223332 211 11 1 114789999999999999999999999999999841
Q ss_pred ------CcchHHHHHHHHHHHHhhcChhHHHh-hhc-CCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHH
Q psy4828 228 ------RVNFQIQYQLIFCLWVLTFNPKLADR-MNK-FNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENC 290 (448)
Q Consensus 228 ------~~~~Ql~Y~~ll~lWlLSF~~~~~~~-l~~-~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~ 290 (448)
..+..++.+++.+++-|+++.+-... +.. .|.||.|+.+|+.. ++|. ||.....+ ++.
T Consensus 205 ~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k 279 (458)
T 3nmz_A 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-----NSK 279 (458)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCH-----HHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCH-----HHH
Confidence 13467888999999999998764443 443 47799999999743 4444 66443211 133
Q ss_pred HHHHhcchH-HHHHHHhcCCCCChHHHH-HHHHHHHHHHHHhhhcch-HHHHHHHHhhCCcccCCCCCChhHHHhchhhh
Q psy4828 291 IAMVQSKVL-KQLSILEQRKFDDEDIVE-DVQFLNEKLQASVQDLSS-FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367 (448)
Q Consensus 291 ~~mv~~~~l-~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~~~~lTs-fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf 367 (448)
..++++|++ ++++.|.... |+++.+ .+..|.+. ++ -|+.+..+-.
T Consensus 280 ~~I~~~GaI~~LV~lLl~s~--~~~v~~~A~~aL~nL--------s~~~~~nk~~I~~---------------------- 327 (458)
T 3nmz_A 280 KTLREVGSVKALMECALEVK--KESTLKSVLSALWNL--------SAHCTENKADICA---------------------- 327 (458)
T ss_dssp HHHHHTTHHHHHHHHHTTCC--SHHHHHHHHHHHHHH--------HHHCHHHHHHHHH----------------------
T ss_pred HHHHHcCCHHHHHHHHhcCC--CHHHHHHHHHHHHHH--------ccCCHHHHHHHHH----------------------
Confidence 467777755 5555555443 555544 34444444 66 4566666541
Q ss_pred hhhhHHHHHHHHHhhccCCCh---hHHHHHHhhHhhHhh---hCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 368 HEKNYELLKSLIHLLETSRDP---LVLSVASYDIGEYVR---HCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 368 ~e~~~~llk~L~~lL~~S~D~---~vlaVAc~DIge~vr---~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
..+.+..|+++|...++. .++.-||--|..+.. -.|+.|..+.+.|+-..+++||.+++.+|+.+|..|+.
T Consensus 328 ---~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 328 ---VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp ---STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred ---hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 157899999999644443 366667777766665 47999999999999999999999999999999999998
Q ss_pred HHhc
Q psy4828 442 KLMV 445 (448)
Q Consensus 442 klm~ 445 (448)
-|..
T Consensus 405 nLa~ 408 (458)
T 3nmz_A 405 NLSA 408 (458)
T ss_dssp HHHS
T ss_pred HHHc
Confidence 7753
No 25
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.30 E-value=2.8e-10 Score=126.20 Aligned_cols=309 Identities=12% Similarity=0.124 Sum_probs=213.4
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
..+..++++|.+..+.++..++...+..+..+...+.. +.+. ...++++.+|.++++.++..|+..|..|...
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~-i~~~------g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLA-IFKS------GGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHH-HHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH-HHHc------CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 46777888887755778888888888886655433333 4442 6688999999999999999999999999875
Q ss_pred ccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhc-cchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHH
Q psy4828 164 SVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLR-IDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFC 240 (448)
Q Consensus 164 ~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~-~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~ 240 (448)
.+. ....+ ...+..|...|++++......++.||..+.. .++.|..+.+.+|++.|+.+|.+...-..++.++.+
T Consensus 265 ~~~--~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~a 342 (780)
T 2z6g_A 265 QEG--AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342 (780)
T ss_dssp STT--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred Chh--hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 421 11111 1234455556655434445567788887664 689999999999999999999766666777899999
Q ss_pred HHHhhcChhHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCC
Q psy4828 241 LWVLTFNPKLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFD 311 (448)
Q Consensus 241 lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~ 311 (448)
+|.|+.++.....+.+.|+||.|+.+++.. .++. ||....+... ...++++.|-.|... .
T Consensus 343 L~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~---------~~~~~i~~Lv~lL~~--~ 411 (780)
T 2z6g_A 343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---------GMEGLLGTLVQLLGS--D 411 (780)
T ss_dssp HHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS---------CCHHHHHHHHHHTTC--S
T ss_pred HHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh---------hhhhHHHHHHHHHcC--C
Confidence 999999988888888889999999998653 2222 4444332210 012333333333333 3
Q ss_pred ChHHHHHHHHHHHHHHHHhhhcchH-HHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCCh-h
Q psy4828 312 DEDIVEDVQFLNEKLQASVQDLSSF-DEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDP-L 389 (448)
Q Consensus 312 Dedl~edl~~L~e~L~~~~~~lTsf-DeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~-~ 389 (448)
|+++..........| +.- ++.+ ..+-+ .+.+..|+++|..+.++ .
T Consensus 412 d~~vr~~A~~aL~~L-------~~~~~~~~------------------------~~i~~--~g~i~~Lv~lL~~~~~~~~ 458 (780)
T 2z6g_A 412 DINVVTCAAGILSNL-------TCNNYKNK------------------------MMVCQ--VGGIEALVRTVLRAGDRED 458 (780)
T ss_dssp CHHHHHHHHHHHHHH-------TSSCHHHH------------------------HHHHT--TTHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHH-------HhCCHHHH------------------------HHHHH--CCCHHHHHHHHHccCCHHH
Confidence 666665444333221 111 1222 22221 45799999999654554 8
Q ss_pred HHHHHHhhHhhHhhhCcch---hHHHHHhCcHHHHHhhhcCCCh-hHHHHHHHHHHHHhc
Q psy4828 390 VLSVASYDIGEYVRHCPRG---KHVIEQLGGKQLVMQLLSHEDP-NVRYEALLAVQKLMV 445 (448)
Q Consensus 390 vlaVAc~DIge~vr~~p~g---r~il~~lg~K~~vM~Lm~h~d~-eVr~eAL~avQklm~ 445 (448)
+..-|+.-||.++..+|.. +..+...|+-..++++|.++++ +||.+|++|+..|..
T Consensus 459 v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 459 ITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc
Confidence 8889999999998877764 5577788999999999999885 999999999988754
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.28 E-value=2.8e-10 Score=115.41 Aligned_cols=258 Identities=14% Similarity=0.176 Sum_probs=181.5
Q ss_pred HHHHHHHHHHHHhcccCCC---ChhhHHHHHHHHHHHhh-------hcCChhHHHHHHHHHHhhccch-hhHHHHhhcc-
Q psy4828 150 INMTAKIIAKIACWSVDLL---NPSDLNFYLTWLKDQLK-------LANNDYMQSVARCLQMMLRIDE-YRIAFINVDG- 217 (448)
Q Consensus 150 ~~~a~~iLt~l~~~~~~~~---~~~~l~~~l~~l~~~L~-------~~~~~~~~~~~~~l~~lL~~~~-~R~~f~~~~g- 217 (448)
..+|...|.++..+...|. +...++.++..|..... ..++..++.++.+|..+.+.++ .|..+...+|
T Consensus 49 ~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 128 (354)
T 3nmw_A 49 ICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128 (354)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCc
Confidence 3468888888875432111 22345666666643211 0123456678999999998765 7877767777
Q ss_pred hhhHHHhhccCcchHHHHHHHHHHHHhhcC--hhHHHhhhcCCCHHHHHHHhhhh----hhhh------hcccCCCchhH
Q psy4828 218 IRTLLSVLSGRVNFQIQYQLIFCLWVLTFN--PKLADRMNKFNVIPTLADILSDS----VKEK------NLIEKPTEPAL 285 (448)
Q Consensus 218 v~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~~~~iI~~L~~ilk~~----~KEK------NLl~~~~~~~~ 285 (448)
++.|+.+|.+ .+..++-+++.+++-||+. ++....+.+.|.||.|+++|..+ .+|. ||...+.+
T Consensus 129 Ip~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~--- 204 (354)
T 3nmw_A 129 MRALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE--- 204 (354)
T ss_dssp HHHHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh---
Confidence 9999999964 2455666999999999995 56677778889999999986443 3443 66553321
Q ss_pred HHHHHHHHH-hcchHHH-HHHHhcCCCCCh---HHHHHH-HHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhH
Q psy4828 286 AKENCIAMV-QSKVLKQ-LSILEQRKFDDE---DIVEDV-QFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQF 359 (448)
Q Consensus 286 ~~~~~~~mv-~~~~l~~-l~~L~~rk~~De---dl~edl-~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~F 359 (448)
+...++ ..|+++. ++.|.... |. ++.++. ..|.+. ... ++.-++++..+..
T Consensus 205 ---nk~~i~~~~Gai~~Lv~lL~~~~--~~~~~~v~~~A~~aL~nL-s~~---~a~~~~~~~~i~~-------------- 261 (354)
T 3nmw_A 205 ---NKADICAVDGALAFLVGTLTYRS--QTNTLAIIESGGGILRNV-SSL---IATNEDHRQILRE-------------- 261 (354)
T ss_dssp ---HHHHHHHSTTHHHHHHHHTTCCC--SSSCCHHHHHHHHHHHHH-HHH---HTTCHHHHHHHHT--------------
T ss_pred ---hhHHHHHhcCcHHHHHHHhccCC--CcccHHHHHHHHHHHHHH-Hhh---ccCCHHHHHHHHH--------------
Confidence 333555 5676654 45554433 32 455543 333333 110 1135777777776
Q ss_pred HHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHH
Q psy4828 360 WRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLA 439 (448)
Q Consensus 360 W~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 439 (448)
.+.+..|+++| .+.++.++.-||--|+.++...|+.+..+-+.|+-..+.+||.+++++||.+|..|
T Consensus 262 ------------~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 262 ------------NNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp ------------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ------------cCCHHHHHHHH-cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 67899999999 47788899999999999997779999999999999999999999999999999999
Q ss_pred HHHHhccC
Q psy4828 440 VQKLMVHN 447 (448)
Q Consensus 440 vQklm~~~ 447 (448)
+..|..++
T Consensus 329 L~nL~~~~ 336 (354)
T 3nmw_A 329 LRNLMANR 336 (354)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 99987654
No 27
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.26 E-value=2.5e-10 Score=123.02 Aligned_cols=290 Identities=16% Similarity=0.212 Sum_probs=194.5
Q ss_pred chhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc--chh
Q psy4828 133 PVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRI--DEY 208 (448)
Q Consensus 133 ~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~--~~~ 208 (448)
...++++.+|.++|.-++..|+..|..|....+. ....+ ..-+..|...|++++.+.+..++.+|..+... +++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~--~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK--VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH--HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 4578899999999999999999999888743211 11111 11234455566665666777789999999984 899
Q ss_pred hHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhh--------------------
Q psy4828 209 RIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILS-------------------- 268 (448)
Q Consensus 209 R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk-------------------- 268 (448)
|..+.+.+|++.|+.+|.+.....++-++.-|+|-||-+++....+.+. .||.|++++.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~-alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDH-ALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHH-THHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhc-cHHHHHHHHhcccccccccccccccccccc
Confidence 9999999999999999976445667779999999999998887777654 5999999872
Q ss_pred -hhhhhh------hcccCCCchhHHHHHHHHHHhcc-hH-HHHHHHhc----CCCCChHHHHHHHHHHHH---HHHHhhh
Q psy4828 269 -DSVKEK------NLIEKPTEPALAKENCIAMVQSK-VL-KQLSILEQ----RKFDDEDIVEDVQFLNEK---LQASVQD 332 (448)
Q Consensus 269 -~~~KEK------NLl~~~~~~~~~~~~~~~mv~~~-~l-~~l~~L~~----rk~~Dedl~edl~~L~e~---L~~~~~~ 332 (448)
..++|. ||...++. +...|++++ ++ +++..|.. .+.++.-..+.+-.|.+. +++.+-.
T Consensus 205 d~~V~~nAa~~L~NLs~~~~~------~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSERSE------ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp CHHHHHHHHHHHHHHTSSCHH------HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cHHHHHHHHHHHHHHhcCCHH------HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 123333 66554321 234678764 33 77777764 344455555555666553 1111111
Q ss_pred cchHHHHHHHHh---hCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhh-Cc--
Q psy4828 333 LSSFDEYKTEVK---SGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRH-CP-- 406 (448)
Q Consensus 333 lTsfDeY~~El~---SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~-~p-- 406 (448)
. ++|..... .|... ..++--+-.| .-++++.|+.+|..+.++.++.-|+--|..++.- .|
T Consensus 279 ~---~~~~~~~~~~~~~~~~-~~~~Gve~L~----------~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~ 344 (584)
T 3l6x_A 279 A---ERYQEAAPNVANNTGT-SPARGYELLF----------QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344 (584)
T ss_dssp C---CC---------------CCCCGGGGGG----------SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH
T ss_pred h---hhhhhhcccccccccc-cCchhHHHHh----------cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc
Confidence 1 11211110 00000 0001001111 2367899999997788899999999999999763 22
Q ss_pred -chhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 407 -RGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 407 -~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.-+.++.+.||...+.+||.|++++|++.|..|+.-|..
T Consensus 345 ~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384 (584)
T ss_dssp HHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 235678888999999999999999999999999987654
No 28
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.23 E-value=5.4e-09 Score=112.62 Aligned_cols=335 Identities=12% Similarity=0.121 Sum_probs=224.4
Q ss_pred HHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhh--chhHHHHHHHhhhcCCCchhHHHH
Q psy4828 62 FITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQE--DRSRVEIFKEYSQTKREPVCSQFL 139 (448)
Q Consensus 62 ~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~--~~~~~~~f~~~~~~~~~~~~~~fl 139 (448)
.|..+-....+.|..+++..+ +..|+.+|++ ++.++..++...+..|... ...+.. +.+. ...++|+
T Consensus 71 ~L~~La~~~~~~k~~V~~~G~---Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~-I~~~------GaIp~LV 139 (584)
T 3l6x_A 71 YLQHLCYRNDKVKTDVRKLKG---IPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIA-IKNC------DGVPALV 139 (584)
T ss_dssp HHHHHHTTCHHHHHHHHHTTH---HHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHH-HHHT------THHHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCC---cHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHH-HHHc------CCHHHHH
Confidence 455555555667888887776 8999999988 7889999999999999863 334444 5554 6789999
Q ss_pred hhhcC-CchhHHHHHHHHHHHHHhcccCCC--ChhhHHHHHHHHHHH-------------hhh-cCChhHHHHHHHHHHh
Q psy4828 140 NLLNG-SDGFIINMTAKIIAKIACWSVDLL--NPSDLNFYLTWLKDQ-------------LKL-ANNDYMQSVARCLQMM 202 (448)
Q Consensus 140 ~lL~~-~d~~I~~~a~~iLt~l~~~~~~~~--~~~~l~~~l~~l~~~-------------L~~-~~~~~~~~~~~~l~~l 202 (448)
.+|.+ ++..++..|...|..|......+. -...++.++..+... ++. .+...+..++.||.+|
T Consensus 140 ~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NL 219 (584)
T 3l6x_A 140 RLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV 219 (584)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 99997 578889999988888865332111 122344554443211 011 1224455689999999
Q ss_pred hccch-hhHHHHhhcch-hhHHHhhcc-----CcchHHHHHHHHHHHHhhcChhH-------------------------
Q psy4828 203 LRIDE-YRIAFINVDGI-RTLLSVLSG-----RVNFQIQYQLIFCLWVLTFNPKL------------------------- 250 (448)
Q Consensus 203 L~~~~-~R~~f~~~~gv-~~L~~lL~~-----~~~~Ql~Y~~ll~lWlLSF~~~~------------------------- 250 (448)
....+ +|+.+.+.+|+ ..|+.+|.+ .....++=+++-++|-|||..+.
T Consensus 220 s~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 299 (584)
T 3l6x_A 220 SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPAR 299 (584)
T ss_dssp TSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCC
T ss_pred hcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCch
Confidence 88764 59999987775 588888853 24455566888899999998421
Q ss_pred -HHhhhcCCCHHHHHHHhhhhh----hhh------hcccCCCchhHHHHHHHHHH-hcchHHHHHHHhcCCCCChHHHHH
Q psy4828 251 -ADRMNKFNVIPTLADILSDSV----KEK------NLIEKPTEPALAKENCIAMV-QSKVLKQLSILEQRKFDDEDIVED 318 (448)
Q Consensus 251 -~~~l~~~~iI~~L~~ilk~~~----KEK------NLl~~~~~~~~~~~~~~~mv-~~~~l~~l~~L~~rk~~Dedl~ed 318 (448)
++.+.+.++|+.|+.+++.+. +|- ||....... +. .+..+| +.++++.|-.|.... ++++..+
T Consensus 300 Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~--~~-~~~~~v~~~~glp~Lv~LL~s~--~~~v~~~ 374 (584)
T 3l6x_A 300 GYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTY--GR-YIRSALRQEKALSAIADLLTNE--HERVVKA 374 (584)
T ss_dssp GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHH--HH-HHHHHHTSHHHHHHHHHGGGCS--CHHHHHH
T ss_pred hHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccc--cH-HHHHHHHHcCcHHHHHHHHcCC--CHHHHHH
Confidence 112222355788999997653 333 765543211 11 122333 356666666666555 5665555
Q ss_pred HHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCC-------ChhHH
Q psy4828 319 VQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSR-------DPLVL 391 (448)
Q Consensus 319 l~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~-------D~~vl 391 (448)
.......|... | .|-.-+ +-+.+..|+++|..++ ...++
T Consensus 375 A~~aL~nLs~~----------------------~---------~~~~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~ 420 (584)
T 3l6x_A 375 ASGALRNLAVD----------------------A---------RNKELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTV 420 (584)
T ss_dssp HHHHHHHHHTT----------------------C---------SCHHHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHH
T ss_pred HHHHHHHHhCC----------------------h---------hHHHHH---HhCCHHHHHHHhcCCcccccccchHHHH
Confidence 54443222211 1 011223 2478999999996442 34678
Q ss_pred HHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCC--ChhHHHHHHHHHHHHhcc
Q psy4828 392 SVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHE--DPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 392 aVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm~~ 446 (448)
+-||.-|+.++-..|+-++.+-+.||-..+++|+.+. .+.+++.|.++++-|..|
T Consensus 421 ~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 421 ISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 8899999999988899999999999999999999876 899999999999988654
No 29
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.18 E-value=1.3e-09 Score=99.59 Aligned_cols=196 Identities=22% Similarity=0.263 Sum_probs=149.4
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHhh-ccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhc-ChhHHH
Q psy4828 175 FYLTWLKDQLKLANNDYMQSVARCLQMML-RIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF-NPKLAD 252 (448)
Q Consensus 175 ~~l~~l~~~L~~~~~~~~~~~~~~l~~lL-~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~ 252 (448)
.+...|...|++++.+....++.+|..+. ..++.|..+.+.++++.|+++|.+. +..++.+++.+++-+++ +++...
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHH
Confidence 34445666666655566667889999998 6788899999999999999999754 56777899999999996 556677
Q ss_pred hhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhh
Q psy4828 253 RMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQD 332 (448)
Q Consensus 253 ~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ 332 (448)
.+.+.|.||.|+.+++.. +..+ .......|.+|... +++
T Consensus 91 ~i~~~g~i~~L~~lL~~~-----------~~~v---------~~~a~~~L~~l~~~---~~~------------------ 129 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-----------NEQI---------LQEALWALSNIASG---GNE------------------ 129 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-----------CHHH---------HHHHHHHHHHHTTS---CHH------------------
T ss_pred HHHHCCCHHHHHHHHcCC-----------cHHH---------HHHHHHHHHHHHcC---CHH------------------
Confidence 777889999999987542 1111 11223445555432 111
Q ss_pred cchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHH
Q psy4828 333 LSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVI 412 (448)
Q Consensus 333 lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il 412 (448)
....+.. .+.+..|+++|. +.|+.+...||.-|+.++...|..+..+
T Consensus 130 ------~~~~~~~--------------------------~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 176 (210)
T 4db6_A 130 ------QIQAVID--------------------------AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAV 176 (210)
T ss_dssp ------HHHHHHH--------------------------TTHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred ------HHHHHHH--------------------------cCcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 1111111 468999999994 6799999999999999999989999999
Q ss_pred HHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 413 EQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 413 ~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.+.|+-+.+++++.++|++||.+|+.|+..|-.
T Consensus 177 ~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 177 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998753
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.12 E-value=6.8e-09 Score=96.39 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=165.9
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhccc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSV 165 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~ 165 (448)
+..++.+|.+ +++++...++..+..+...++.....+.+. ...++++++|.+++..++..|+..|..|....+
T Consensus 4 i~~L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~------g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 4 VEKLVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDA------GGVEVLVKLLTSTDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHT------THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHC------CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 6678999988 558899999999999999888666656664 678899999999999999999999999975432
Q ss_pred CCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhh-ccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHH
Q psy4828 166 DLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMML-RIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLW 242 (448)
Q Consensus 166 ~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL-~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lW 242 (448)
. ..+.+ ...+..|...+++++......++.+|..+. ..++.+..+.+.++++.|+++|.+. +..++..++.+++
T Consensus 77 ~--~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 77 E--AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALA 153 (252)
T ss_dssp H--HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred H--HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 1 01111 124555666666655566667899999999 6889999999999999999998643 4777889999999
Q ss_pred HhhcCh-hHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCC
Q psy4828 243 VLTFNP-KLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDD 312 (448)
Q Consensus 243 lLSF~~-~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~D 312 (448)
-|+... ...+.+.+.|++|.|+++++.. +++. |+....+ +....+++.|+++.+..+.... |
T Consensus 154 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~i~~L~~ll~~~--~ 225 (252)
T 4hxt_A 154 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT------SAIKAIVDAGGVEVLQKLLTST--D 225 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH------HHHHHHHHTTHHHHHHHGGGCS--C
T ss_pred HHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH------HHHHHHHHCCCHHHHHHHHCCC--c
Confidence 999854 5556777789999999999754 3333 6665332 2455788888887777776655 7
Q ss_pred hHHHHHHHHHHHH
Q psy4828 313 EDIVEDVQFLNEK 325 (448)
Q Consensus 313 edl~edl~~L~e~ 325 (448)
+++.+.....-..
T Consensus 226 ~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 226 SEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7776655544433
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.08 E-value=4.5e-09 Score=98.57 Aligned_cols=220 Identities=16% Similarity=0.188 Sum_probs=163.8
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
.....|+.+|.+ +++++...++..+..++..++.....+.+. ...++++.+|.++++-++..|+..|..+...
T Consensus 12 ~~~~~~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~------g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 12 SELPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDA------GALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CSHHHHHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHT------THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHc------CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 446778899988 778888888888887777655555556654 6788999999999999999999999999753
Q ss_pred ccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhh-HHHHhhcchhhHHHhhccCcchHHHHHHHHH
Q psy4828 164 SVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR-IAFINVDGIRTLLSVLSGRVNFQIQYQLIFC 240 (448)
Q Consensus 164 ~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R-~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~ 240 (448)
.+. ....+ ...+..|...|++++......++.+|..+...++.| ..+.+.++++.|+++|.+. +..++..++.+
T Consensus 85 ~~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~ 161 (252)
T 4db8_A 85 GNE--QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWA 161 (252)
T ss_dssp CHH--HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred CHH--HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHH
Confidence 321 11111 124556666776655556667899999999999999 8889999999999999653 56778899999
Q ss_pred HHHhhcCh-hHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCC
Q psy4828 241 LWVLTFNP-KLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKF 310 (448)
Q Consensus 241 lWlLSF~~-~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 310 (448)
++-|+... +..+.+.+.|+||.|+++++.. +++. |+....+ +....+++.|+++.|..+....
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~~~~g~i~~L~~ll~~~- 234 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------EQKQAVKEAGALEKLEQLQSHE- 234 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH------HHHHHHHHTTHHHHHHTTTTCS-
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH------HHHHHHHHCCcHHHHHHHhCCC-
Confidence 99999854 5566667789999999999764 3333 7765433 2455788888887777776655
Q ss_pred CChHHHHHHHH
Q psy4828 311 DDEDIVEDVQF 321 (448)
Q Consensus 311 ~Dedl~edl~~ 321 (448)
|+++......
T Consensus 235 -~~~v~~~A~~ 244 (252)
T 4db8_A 235 -NEKIQKEAQE 244 (252)
T ss_dssp -SSHHHHTHHH
T ss_pred -CHHHHHHHHH
Confidence 7776655443
No 32
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.00 E-value=1.3e-08 Score=103.07 Aligned_cols=213 Identities=13% Similarity=0.092 Sum_probs=156.0
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcchhhHHHhhcc----------CcchHHHHHHHHHHHHhhcChh-HHHhhhc-CCCH
Q psy4828 193 QSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSG----------RVNFQIQYQLIFCLWVLTFNPK-LADRMNK-FNVI 260 (448)
Q Consensus 193 ~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~----------~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~-~~iI 260 (448)
.-++.+|..+...+++|..+.+.+|++.|+.+|.. ..+..+|.+++.++.-|+++.+ ....+.. .|+|
T Consensus 50 ~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 129 (354)
T 3nmw_A 50 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 129 (354)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcH
Confidence 34789999999999999999999999999999841 1246788899999999999876 4444543 4779
Q ss_pred HHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchH-HHHHHHhcCCCCChHHHH-HHHHHHHHHHHH
Q psy4828 261 PTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVL-KQLSILEQRKFDDEDIVE-DVQFLNEKLQAS 329 (448)
Q Consensus 261 ~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l-~~l~~L~~rk~~Dedl~e-dl~~L~e~L~~~ 329 (448)
|.|+++|+.. ++|. ||.....+ ++-..++++|++ ++++.|.... |+++.+ .+..|.+.
T Consensus 130 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~-----~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nL---- 198 (354)
T 3nmw_A 130 RALVAQLKSESEDLQQVIASVLRNLSWRADV-----NSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNL---- 198 (354)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCCH-----HHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHH----
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhccCCH-----HHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHH----
Confidence 9999999753 4444 77543221 133467777755 5566555544 555544 33444444
Q ss_pred hhhcch-HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCCh---hHHHHHHhhHhhHhh--
Q psy4828 330 VQDLSS-FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDP---LVLSVASYDIGEYVR-- 403 (448)
Q Consensus 330 ~~~lTs-fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~---~vlaVAc~DIge~vr-- 403 (448)
++ -|+.+..+-. ..+.+..|+++|...++. .++.-||--|..+..
T Consensus 199 ----s~~~~~nk~~i~~-------------------------~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 199 ----SAHCTENKADICA-------------------------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp ----HTTCHHHHHHHHH-------------------------STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred ----HccChhhhHHHHH-------------------------hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 66 5566666641 157899999999544333 466667777776665
Q ss_pred -hCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 404 -HCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 404 -~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
-.|++|..+.+.|+-..+++||.+++.+|+.+|..|+..|-.
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC
Confidence 479999999999999999999999999999999999987753
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.94 E-value=2e-08 Score=91.69 Aligned_cols=185 Identities=20% Similarity=0.223 Sum_probs=134.1
Q ss_pred CCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhh-ccc
Q psy4828 130 KREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMML-RID 206 (448)
Q Consensus 130 ~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL-~~~ 206 (448)
.+..+|+++.++|.++|+.++..|+..|..+....+. ....+ ...+..|...|++++......++.+|..+. ..+
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNE--QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 3568899999999999999999999999999743321 01111 124455666666655556667889999998 577
Q ss_pred hhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcC-hhHHHhhhcCCCHHHHHHHhhhh---hhhh------hc
Q psy4828 207 EYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFN-PKLADRMNKFNVIPTLADILSDS---VKEK------NL 276 (448)
Q Consensus 207 ~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~iI~~L~~ilk~~---~KEK------NL 276 (448)
+.|..+.+.++++.|+.+|.+. +..++.+++.+++-++.. ++..+.+.+.|+||.|+++++.. +++. |+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999754 577888999999999965 45566677789999999999754 3333 77
Q ss_pred ccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHH
Q psy4828 277 IEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEK 325 (448)
Q Consensus 277 l~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~ 325 (448)
...++. +...+++.|+++.|..|.... |+++.+.....-..
T Consensus 166 ~~~~~~------~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~ 206 (210)
T 4db6_A 166 ASGGNE------QKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEK 206 (210)
T ss_dssp HTSCHH------HHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHH
T ss_pred HcCCcH------HHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHH
Confidence 765432 445788888887777766654 88887765554433
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.77 E-value=5.4e-06 Score=91.49 Aligned_cols=322 Identities=13% Similarity=0.085 Sum_probs=213.3
Q ss_pred hHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHH-HhhhcCCchhH
Q psy4828 71 SAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQF-LNLLNGSDGFI 149 (448)
Q Consensus 71 ~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~f-l~lL~~~d~~I 149 (448)
++--.+++..+| +...|...+.+-...++.+.+|.+++..+.+.+-|.-+ .+. |.++ ..+++. ..|
T Consensus 244 p~~~s~lfl~e~--~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~--------~~~~L~~~l~~--~~i 310 (778)
T 3opb_A 244 TTLCSEIFLTKG--LSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TEN--------YLQLLERSLNV--EDV 310 (778)
T ss_dssp HHHHHHHHSTTT--HHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHH--------HHHHHHHHTTS--GGG
T ss_pred HHHHHHHHcccc--HHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHh--------HHHHHHHHhcc--HHH
Confidence 333344555544 34555556655355667799999999999888777654 442 3444 444443 478
Q ss_pred HHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcc-hhhHHHhhccC
Q psy4828 150 INMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDG-IRTLLSVLSGR 228 (448)
Q Consensus 150 ~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~g-v~~L~~lL~~~ 228 (448)
+..|+-+|.+|-..+.. ....+..+...+...|..+..+..+.++..|+.+--.++.|..+.+..| ++.|+.++.++
T Consensus 311 r~lAavvL~KL~~~~~~--~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~ 388 (778)
T 3opb_A 311 QIYSALVLVKTWSFTKL--TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQ 388 (778)
T ss_dssp HHHHHHHHHHHTGGGTC--TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCCC--CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCC
Confidence 99999999999776542 2334555666666666554444567899999999999999999999887 78899999765
Q ss_pred cchHHHHHHHHHHHHhhcChhH---------------------------------------HHhhhcCCCHHHHHHHhhh
Q psy4828 229 VNFQIQYQLIFCLWVLTFNPKL---------------------------------------ADRMNKFNVIPTLADILSD 269 (448)
Q Consensus 229 ~~~Ql~Y~~ll~lWlLSF~~~~---------------------------------------~~~l~~~~iI~~L~~ilk~ 269 (448)
..-.++|.++.++-=+|...+- ...+.+.|+||.|+.+++.
T Consensus 389 ~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S 468 (778)
T 3opb_A 389 KMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN 468 (778)
T ss_dssp CCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG
T ss_pred CCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 6678899999999999884321 1123456999999999964
Q ss_pred h---hhhh------hcccCCCchhHHHHHHHHHHhcch-HHHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHhhhcchHHH
Q psy4828 270 S---VKEK------NLIEKPTEPALAKENCIAMVQSKV-LKQLSILEQRKFD-DEDIVEDVQFLNEKLQASVQDLSSFDE 338 (448)
Q Consensus 270 ~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~-l~~l~~L~~rk~~-Dedl~edl~~L~e~L~~~~~~lTsfDe 338 (448)
. +||. ||.... ++-..|++.|+ .++++.|....-. ++-=...+..|...+-. ..
T Consensus 469 ~s~~~re~A~~aL~nLS~d~-------~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis--------~n 533 (778)
T 3opb_A 469 LSPNCKQQVVRIIYNITRSK-------NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIF--------TN 533 (778)
T ss_dssp SCHHHHHHHHHHHHHHHTSG-------GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHT--------SC
T ss_pred CCHHHHHHHHHHHHHHcCCH-------HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhc--------CC
Confidence 4 6777 765432 13446888776 5677777666421 21223455555555310 00
Q ss_pred HHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCC----------h---hHHHHHHhhHhhHhhhC
Q psy4828 339 YKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRD----------P---LVLSVASYDIGEYVRHC 405 (448)
Q Consensus 339 Y~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D----------~---~vlaVAc~DIge~vr~~ 405 (448)
... +.+| ..-.+.++-|+++|..+.+ + .-..-|+--|+-++..
T Consensus 534 p~~-~f~~----------------------~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~- 589 (778)
T 3opb_A 534 PGL-IFKK----------------------YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS- 589 (778)
T ss_dssp HHH-HSSS----------------------SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC-
T ss_pred HHH-HcCC----------------------CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC-
Confidence 110 1111 0114799999999952111 1 1245678888888876
Q ss_pred c-----c-hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 406 P-----R-GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 406 p-----~-gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
| . .+.+++.-|+=..+.+||.++++.||+.|+.++--||.+
T Consensus 590 ~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 590 ETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH 636 (778)
T ss_dssp CSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred CcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 5 2 344555458999999999999999999999999998854
No 35
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.58 E-value=2.4e-05 Score=86.32 Aligned_cols=323 Identities=14% Similarity=0.195 Sum_probs=204.9
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcC-CchhHHHHHHHHHHHHHh
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNG-SDGFIINMTAKIIAKIAC 162 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~-~d~~I~~~a~~iLt~l~~ 162 (448)
..++.|.+.|.+ ++.+-.++.+..+.-+-.+...+ +.|.+ +......++.+++. +|.-+.+-++.++++|..
T Consensus 334 ~La~~~~~~L~~-~~~~~~~~AvEgLaYLSl~~~VK-e~L~~-----d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 334 QLSEIFINAISR-RIVPKVEMSVEALAYLSLKASVK-IMIRS-----NESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp HHHHHHHHHTTT-CCHHHHHHHHHHHHHHTTSSHHH-HHHHH-----CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc-CCccHHHHHHHHHHHHhCCHHHH-HHHHh-----CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 456666777766 34444777777766664443333 33444 22446667888884 788899999999999987
Q ss_pred cccCCCC-hhhHH------------------------HHHH-------------HHHHHhhhcCChhHHHHHHHHHHhhc
Q psy4828 163 WSVDLLN-PSDLN------------------------FYLT-------------WLKDQLKLANNDYMQSVARCLQMMLR 204 (448)
Q Consensus 163 ~~~~~~~-~~~l~------------------------~~l~-------------~l~~~L~~~~~~~~~~~~~~l~~lL~ 204 (448)
+.+.... +..+. .+.. .|...++++++.....+++++..+-.
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 6542111 01111 1112 22223344444555668899999999
Q ss_pred cchhhHHHHhhcchhhHHHhhccCcchH--HHHHHHHHHHHhhcChhHHHhhhc---CCCHHHHHHHhhh--h-------
Q psy4828 205 IDEYRIAFINVDGIRTLLSVLSGRVNFQ--IQYQLIFCLWVLTFNPKLADRMNK---FNVIPTLADILSD--S------- 270 (448)
Q Consensus 205 ~~~~R~~f~~~~gv~~L~~lL~~~~~~Q--l~Y~~ll~lWlLSF~~~~~~~l~~---~~iI~~L~~ilk~--~------- 270 (448)
.++.|..+.+++|++.|+++|.++...+ ..-.++.++-=++...+-...|.. .+.||.|+++|.. .
T Consensus 487 d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~ 566 (778)
T 3opb_A 487 SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH 566 (778)
T ss_dssp SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence 9999999999999999999997543322 444666666655543322223422 4899999999982 2
Q ss_pred ---------hhhh-----hcccCCCchhHHHHHHHHHHhc-chHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcch
Q psy4828 271 ---------VKEK-----NLIEKPTEPALAKENCIAMVQS-KVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSS 335 (448)
Q Consensus 271 ---------~KEK-----NLl~~~~~~~~~~~~~~~mv~~-~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTs 335 (448)
..|. ||.+.+.+.. .+....++.. |+.+.|..|.... .+.+......+-..|-.
T Consensus 567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~--E~~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~------- 635 (778)
T 3opb_A 567 NDEQIKLTDNYEALLALTNLASSETSDG--EEVCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMS------- 635 (778)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHCCSHHH--HHHHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHT-------
T ss_pred ccccccHHHHHHHHHHHHHHhcCCcccc--hHHHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhC-------
Confidence 2233 8887763210 0123457774 7778777777653 45555544333322221
Q ss_pred HHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc-hhHHHHH
Q psy4828 336 FDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR-GKHVIEQ 414 (448)
Q Consensus 336 fDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~-gr~il~~ 414 (448)
+|.....+|-... ...+.+-++.|+.++ .+.|..+...|+--|+.+.-.+|. .+.+++.
T Consensus 636 ---------------~~e~i~~k~~~~~----~~~~~~rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~~ia~~ll~~ 695 (778)
T 3opb_A 636 ---------------HPLTIAAKFFNLE----NPQSLRNFNILVKLL-QLSDVESQRAVAAIFANIATTIPLIAKELLTK 695 (778)
T ss_dssp ---------------SGGGTGGGTSCCS----SHHHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred ---------------CcHHHHHHHHhhc----CchhhccHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence 1111101220000 122345689999999 589999999999999999766675 5777777
Q ss_pred hCcHHHHHhhhcC--CChhHHHHHHHHHHHHh
Q psy4828 415 LGGKQLVMQLLSH--EDPNVRYEALLAVQKLM 444 (448)
Q Consensus 415 lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm 444 (448)
-||-+.+.+++.. +|+++|..|+.++.-|+
T Consensus 696 ~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 696 KELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 7889999999987 99999999999998887
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.50 E-value=5.9e-06 Score=81.65 Aligned_cols=209 Identities=13% Similarity=0.142 Sum_probs=146.7
Q ss_pred HHHHHHHHhhccchhhHHHHhhcchhhHHH-hhccCcchHHHHHHHHHHHHhhcC-hhHHHhhhcCCCHHHHHHHhhhh-
Q psy4828 194 SVARCLQMMLRIDEYRIAFINVDGIRTLLS-VLSGRVNFQIQYQLIFCLWVLTFN-PKLADRMNKFNVIPTLADILSDS- 270 (448)
Q Consensus 194 ~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~-lL~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~iI~~L~~ilk~~- 270 (448)
.++..|..+....+++..|.+.+|++.|+. +|.+ ....++=+++.|+.-++-+ +...+.+.+.|.||.|+.+++..
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~ 137 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA 137 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC
Confidence 467888889998899999999999999999 8864 2445555999999888775 45666677889999999999853
Q ss_pred ---hhhh------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHH
Q psy4828 271 ---VKEK------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKT 341 (448)
Q Consensus 271 ---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~ 341 (448)
++++ |++...+. ....++.+|+++.|-.+.... |+++..+..+....|-.. .++++.
T Consensus 138 ~~~v~~~A~~ALsnl~~~~~~------~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~------~~~~~~ 203 (296)
T 1xqr_A 138 CDTVRVKALFAISCLVREQEA------GLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVG------HPEHKG 203 (296)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH------HHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH------CGGGHH
T ss_pred CHHHHHHHHHHHHHHHcCCcH------HHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhC------ChHHHH
Confidence 4555 77765432 223566667666555544443 888887776665443321 122222
Q ss_pred HHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhC--c--
Q psy4828 342 EVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLG--G-- 417 (448)
Q Consensus 342 El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg--~-- 417 (448)
.+-+ .++++.|+++| .+.|+.+...|+.-|+.+++..|..+..+...+ .
T Consensus 204 ------------------------~vv~--~g~i~~Lv~LL-~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~ 256 (296)
T 1xqr_A 204 ------------------------TLCS--MGMVQQLVALV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE 256 (296)
T ss_dssp ------------------------HHHH--TTHHHHHHHHH-TSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHH
T ss_pred ------------------------HHHH--cCCHHHHHHHH-cCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHH
Confidence 2322 57999999999 578999999999999999998776665554321 1
Q ss_pred --HHHHHhhhcCC-ChhHHHHHHHHHHHHh
Q psy4828 418 --KQLVMQLLSHE-DPNVRYEALLAVQKLM 444 (448)
Q Consensus 418 --K~~vM~Lm~h~-d~eVr~eAL~avQklm 444 (448)
.+++-.|-+|+ +.++...|...+.+..
T Consensus 257 lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 257 LLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 12333333476 6888888988887765
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.41 E-value=4.4e-06 Score=79.95 Aligned_cols=176 Identities=16% Similarity=0.202 Sum_probs=128.4
Q ss_pred HHHHHHHHhcccChh--hHHHHHHHHHHHHHhhch-hHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHH
Q psy4828 85 AAKTFLNLLEHISKD--STIQYILVLIDDILQEDR-SRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIA 161 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~--d~vqyvL~li~dll~~~~-~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~ 161 (448)
-+..++++|++ +++ ++.......+..+...++ .+.. +.+. ...+||+.+|.+++.-++..|+..|..|.
T Consensus 9 ~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-I~~~------G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 9 TLERAVSMLEA-DHMLPSRISAAATFIQHECFQKSEARKR-VNQL------RGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CHHHHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHT------THHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcHHHHH-HHHc------CCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36778999988 454 777778788888775554 5555 4443 56799999999999999999999999997
Q ss_pred hcccC-CC---ChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhc----cC-----
Q psy4828 162 CWSVD-LL---NPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS----GR----- 228 (448)
Q Consensus 162 ~~~~~-~~---~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~----~~----- 228 (448)
...+. +. ....++.++..|.. +++.+....++.+|..|-..+++|..+.+ +|++.|++++. +.
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~---~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~ 156 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQ---TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDY 156 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGC
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCccccc
Confidence 63321 00 11234455444431 22345556678899999999999998886 58998887651 11
Q ss_pred ------cchHHHHHHHHHHHHhhc-ChhHHHhhhcC-CCHHHHHHHhhhhhh
Q psy4828 229 ------VNFQIQYQLIFCLWVLTF-NPKLADRMNKF-NVIPTLADILSDSVK 272 (448)
Q Consensus 229 ------~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~-~iI~~L~~ilk~~~K 272 (448)
....++|++..|++-||. +++....|.+. |+|+.|+.+++...-
T Consensus 157 ~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 157 PKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 256899999999999998 56888888654 899999999998753
No 38
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.41 E-value=2.7e-05 Score=84.24 Aligned_cols=319 Identities=15% Similarity=0.182 Sum_probs=197.1
Q ss_pred HHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhccc-ChhhHHHHHHHHHHHHHhhchh-----------------
Q psy4828 57 KEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHI-SKDSTIQYILVLIDDILQEDRS----------------- 118 (448)
Q Consensus 57 ~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~-~~~d~vqyvL~li~dll~~~~~----------------- 118 (448)
+|=-+.+..+-+.+++.|.++ ...| ...+++.|++- .+.|+++++|..+..++..++.
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~V-g~~~---l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~ 112 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLEV-GIQA---MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQ 112 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTHH-HHHT---HHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHh-hhhh---HHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHH
Confidence 333334444444444433332 2333 88899999886 4588999999998887765432
Q ss_pred HHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC------ChhhHHHHHHHHHHHhhhcCChhH
Q psy4828 119 RVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL------NPSDLNFYLTWLKDQLKLANNDYM 192 (448)
Q Consensus 119 ~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~------~~~~l~~~l~~l~~~L~~~~~~~~ 192 (448)
.++.|.+ ..+..+.++.+|+.+|-|++.-|.++|+.|....+.+. ...++..+++ .|+. +.+.+
T Consensus 113 ~~d~f~~-----~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~----lL~d-~rE~i 182 (651)
T 3grl_A 113 FTEIFIK-----QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD----LLAD-SREVI 182 (651)
T ss_dssp HHHHHHH-----STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG----GGGC-SSHHH
T ss_pred HHHHHHc-----CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH----HHhC-chHHH
Confidence 3344444 45789999999999999999999999999987664321 1122333333 3332 23444
Q ss_pred HH-HHHHHHHhhccch-hhHHHHhhcchhhHHHhhccCc---chHHHHHHHHHHH-HhhcChhHHHhhhcCCCHHHHHHH
Q psy4828 193 QS-VARCLQMMLRIDE-YRIAFINVDGIRTLLSVLSGRV---NFQIQYQLIFCLW-VLTFNPKLADRMNKFNVIPTLADI 266 (448)
Q Consensus 193 ~~-~~~~l~~lL~~~~-~R~~f~~~~gv~~L~~lL~~~~---~~Ql~Y~~ll~lW-lLSF~~~~~~~l~~~~iI~~L~~i 266 (448)
+. ++-.|..+.+... .++++.-.+++..|++++.... |--+.--++.+++ ++.+|+.--..|.+.+.||.|+.+
T Consensus 183 RneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 183 RNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 43 6777888777654 4556556678999999995211 2222234444444 556665555556788999999998
Q ss_pred hhhhhhh------h--h---------c-ccCCCchhHHHHHHHHHHhcchH-HHHHHHhcCCCCChHHHHHHHHHHHHHH
Q psy4828 267 LSDSVKE------K--N---------L-IEKPTEPALAKENCIAMVQSKVL-KQLSILEQRKFDDEDIVEDVQFLNEKLQ 327 (448)
Q Consensus 267 lk~~~KE------K--N---------L-l~~~~~~~~~~~~~~~mv~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~ 327 (448)
++...-+ | | + +..+........|=.+|.++|++ ++++.+...+..++=..+.+..+.++..
T Consensus 263 L~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ir 342 (651)
T 3grl_A 263 FEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIR 342 (651)
T ss_dssp GCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHT
T ss_pred hCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHh
Confidence 8643212 2 3 2 22222111122244478888876 5667777777777667888888888755
Q ss_pred HHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc
Q psy4828 328 ASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR 407 (448)
Q Consensus 328 ~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~ 407 (448)
.+- .--+|.+++.- .+.|+. --++..|..++.+......-+-||+.+..|+..++.
T Consensus 343 gN~----~~Q~~fa~~~v---p~~~~~-----------------p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 343 GCQ----VNQDYFASVNA---PSNPPR-----------------PAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp TCH----HHHHHHHHCEE---SSSSCE-----------------EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred CCH----HHHHHHhhccC---CCCCCc-----------------ChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 442 22233333332 223332 346666777774334456668899999999999998
Q ss_pred hhHHHH
Q psy4828 408 GKHVIE 413 (448)
Q Consensus 408 gr~il~ 413 (448)
|+..+.
T Consensus 399 ~Q~~i~ 404 (651)
T 3grl_A 399 GQGEIV 404 (651)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887665
No 39
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.29 E-value=1.4e-05 Score=78.93 Aligned_cols=168 Identities=11% Similarity=0.082 Sum_probs=121.1
Q ss_pred HHHHHHHHhhcChhHHHhhhcCCCHHHHHH-Hhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcch-HHHHHH
Q psy4828 236 QLIFCLWVLTFNPKLADRMNKFNVIPTLAD-ILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKV-LKQLSI 304 (448)
Q Consensus 236 ~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~-ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~-l~~l~~ 304 (448)
.++..+--+.-+.+.+..|.+.|.+|.|+. +|+.. +|+- |+..+++. +-..++++|+ +++++.
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~------~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA------IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH------HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH------HHHHHHHCCCHHHHHHH
Confidence 455555566666677777878899999999 88754 4444 77666542 2225667665 567777
Q ss_pred HhcCCCCChHHHH-HHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhc
Q psy4828 305 LEQRKFDDEDIVE-DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE 383 (448)
Q Consensus 305 L~~rk~~Dedl~e-dl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~ 383 (448)
|.... ++++.. .+-.|.+... ++. ++...|.+ .+.+..|+++|
T Consensus 133 L~~~~--~~~v~~~A~~ALsnl~~-------~~~------------------------~~~~~~~~--~ggi~~L~~lL- 176 (296)
T 1xqr_A 133 LDRDA--CDTVRVKALFAISCLVR-------EQE------------------------AGLLQFLR--LDGFSVLMRAM- 176 (296)
T ss_dssp HHHCS--CHHHHHHHHHHHHHHHT-------TCH------------------------HHHHHHHH--TTHHHHHHHHH-
T ss_pred HccCC--CHHHHHHHHHHHHHHHc-------CCc------------------------HHHHHHHH--CCCHHHHHHHH-
Confidence 76543 444433 3334433310 111 12234444 34788999999
Q ss_pred cCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 384 TSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 384 ~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.+.|+.+..-||.-|+.++...|+-+..+-+.|+-..+++||.++|++|+..|+.|+..|+.
T Consensus 177 ~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 177 QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999988864
No 40
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.15 E-value=1.2e-05 Score=77.01 Aligned_cols=184 Identities=18% Similarity=0.185 Sum_probs=126.2
Q ss_pred chhHHHHhhhcCCch--hHHHHHHHHHHHHHhcccCCCChhhH--HHHHHHHHHHhhhcCChhHHHHHHHHHHhhc-cch
Q psy4828 133 PVCSQFLNLLNGSDG--FIINMTAKIIAKIACWSVDLLNPSDL--NFYLTWLKDQLKLANNDYMQSVARCLQMMLR-IDE 207 (448)
Q Consensus 133 ~~~~~fl~lL~~~d~--~I~~~a~~iLt~l~~~~~~~~~~~~l--~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~-~~~ 207 (448)
-..++++.+|.++|+ -++..|+..+..|....+. ....+ ..-+..|...|++++.+.++.++.+|..+.. .++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~--~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSE--ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH--HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH--HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 446789999999987 6777788888776643321 11111 1123445556666556666778999999886 689
Q ss_pred hhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhh------------------
Q psy4828 208 YRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSD------------------ 269 (448)
Q Consensus 208 ~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~------------------ 269 (448)
+|..+.+.+|++.|+++|.......++.++.-++|-||-.++....+.+.+ ||.|++++-.
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~-i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEA-LLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHH-HHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhcc-HHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999999754467788899999999999888877776644 8999886521
Q ss_pred -hhhhh------hcccCCCchhHHHHHHHHHHhcc-h-HHHHHHHhc----CCCCChHHHHHHHHHHHH
Q psy4828 270 -SVKEK------NLIEKPTEPALAKENCIAMVQSK-V-LKQLSILEQ----RKFDDEDIVEDVQFLNEK 325 (448)
Q Consensus 270 -~~KEK------NLl~~~~~~~~~~~~~~~mv~~~-~-l~~l~~L~~----rk~~Dedl~edl~~L~e~ 325 (448)
.++|. ||-...++ +-.+|.+++ + ..++..|.+ .+++|.-..+-+-.|++.
T Consensus 165 ~~v~~na~~~L~nLss~~~~------~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGAD------GRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHH------HHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHH------HHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 23333 55554321 223677764 3 466666664 567777666666666553
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.12 E-value=0.002 Score=69.25 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=155.1
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhH-HHHHHHHHHhhccc-hhhHHHH
Q psy4828 136 SQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYM-QSVARCLQMMLRID-EYRIAFI 213 (448)
Q Consensus 136 ~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~-~~~~~~l~~lL~~~-~~R~~f~ 213 (448)
..|.+-|++++++++-.|++.|+.+. ..+-.+.++..+...++.+ +.|+ ..++.|+..+.+.. +.-.
T Consensus 110 n~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 110 NCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp HHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHChHHHH---
Confidence 34778888999999999999999985 2344566777777777664 4555 45778888776632 2111
Q ss_pred hhcchhhHHHhhccCcchHHHHHHHHHHHHhhcCh-hHHHhhhcCCCHHHHHHHhhhhhh-----hhhcccCCCchhHHH
Q psy4828 214 NVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNP-KLADRMNKFNVIPTLADILSDSVK-----EKNLIEKPTEPALAK 287 (448)
Q Consensus 214 ~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~~iI~~L~~ilk~~~K-----EKNLl~~~~~~~~~~ 287 (448)
+.++.+..+|.+ .+...+|.++.++.-+.-.. +....+. .++|.++.+|+.... |...-. .++
T Consensus 179 --~~~~~l~~lL~D-~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~-~~~----- 247 (618)
T 1w63_A 179 --MFLPATKNLLNE-KNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSG-ISD----- 247 (618)
T ss_dssp --GGGGGTTTSTTC-CCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSS-SSC-----
T ss_pred --HHHHHHHHHhCC-CCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccC-CCC-----
Confidence 233444455543 45677779888888776542 3323333 579999999887532 211110 111
Q ss_pred HHHHHHHhcchHHHHHHHhcCCCCChHHHHHHH-HHHHHHHHHhhhc-chHHHHHHHHhhCCcccCCCCCChhHHHhchh
Q psy4828 288 ENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQ-FLNEKLQASVQDL-SSFDEYKTEVKSGRLEWSPVHRSAQFWRENAP 365 (448)
Q Consensus 288 ~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~-~L~e~L~~~~~~l-TsfDeY~~El~SG~L~WSP~H~se~FW~EN~~ 365 (448)
...+..++.++..+... |++..+.+. .|...+. ....+ .+-....-|.-.-.+.+++..
T Consensus 248 ----~~~q~~il~~L~~l~~~---~~~~~~~~~~~L~~l~~-~~~~~~~~~~aV~~ea~~~i~~l~~~~----------- 308 (618)
T 1w63_A 248 ----PFLQVRILRLLRILGRN---DDDSSEAMNDILAQVAT-NTETSKNVGNAILYETVLTIMDIKSES----------- 308 (618)
T ss_dssp ----HHHHHHHHHHHHHHTTT---CHHHHHTTHHHHHHHHH-TSCCSSTHHHHHHHHHHHHHHHSCCCH-----------
T ss_pred ----ChHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHHhcCCCH-----------
Confidence 22334566677766542 565543322 2222211 00000 011111112111111222210
Q ss_pred hhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 366 RLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 366 kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.+. -..+..|..+| .+.|+.+.-+|+.-|+.+++.+|. .++. ....|+..+.++|+.||..|+.++-+|..
T Consensus 309 ~l~---~~a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 309 GLR---VLAINILGRFL-LNNDKNIRYVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp HHH---HHHHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCC
T ss_pred HHH---HHHHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence 000 14677888888 578899999999999999998774 3333 45689999999999999999999888764
Q ss_pred c
Q psy4828 446 H 446 (448)
Q Consensus 446 ~ 446 (448)
+
T Consensus 380 ~ 380 (618)
T 1w63_A 380 G 380 (618)
T ss_dssp S
T ss_pred c
Confidence 3
No 42
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.00 E-value=0.003 Score=67.36 Aligned_cols=296 Identities=13% Similarity=0.162 Sum_probs=157.4
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccch--------
Q psy4828 136 SQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDE-------- 207 (448)
Q Consensus 136 ~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~-------- 207 (448)
+++.++|.+++++|+..|+..+..+...+++..+. ..++..|...|..+++..+..++.+|..+.....
T Consensus 124 ~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~---~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~ 200 (591)
T 2vgl_B 124 EPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED---QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN 200 (591)
T ss_dssp HHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH---HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc---ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc
Confidence 44788899999999999999999998755432111 3577778877765444455567788888776543
Q ss_pred ---hhHHHHhhc-----------------------chhhHHHhhc---cCcchHHHHHHHHHHHHhh----cChhHHHhh
Q psy4828 208 ---YRIAFINVD-----------------------GIRTLLSVLS---GRVNFQIQYQLIFCLWVLT----FNPKLADRM 254 (448)
Q Consensus 208 ---~R~~f~~~~-----------------------gv~~L~~lL~---~~~~~Ql~Y~~ll~lWlLS----F~~~~~~~l 254 (448)
+++.+-... ....+++.+. ...+.-+.|+++-|+.-++ -+++....+
T Consensus 201 ~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~ 280 (591)
T 2vgl_B 201 PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNML 280 (591)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHH
T ss_pred HHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 333332100 0011222111 2345678889888887764 234443332
Q ss_pred hcCCCHHHHHHHhhhhhhhh-----------------------hcccC-CCchhHHHHHHHHHH----h-cchHHHHHHH
Q psy4828 255 NKFNVIPTLADILSDSVKEK-----------------------NLIEK-PTEPALAKENCIAMV----Q-SKVLKQLSIL 305 (448)
Q Consensus 255 ~~~~iI~~L~~ilk~~~KEK-----------------------NLl~~-~~~~~~~~~~~~~mv----~-~~~l~~l~~L 305 (448)
. .++++.|+.++....-=+ .++.. ..+.+++.. +..++ . .++..++..|
T Consensus 281 ~-~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~-al~~L~~l~~~~nv~~iv~~L 358 (591)
T 2vgl_B 281 L-KKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLE-KLDIMIRLASQANIAQVLAEL 358 (591)
T ss_dssp H-HHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHH-HHHHHHHTCCSSTHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHH-HHHHHHHHCChhhHHHHHHHH
Confidence 1 123555555443111101 11110 112333332 22222 1 2233344433
Q ss_pred hc-CCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhh----hhhhhHHHHHHHHH
Q psy4828 306 EQ-RKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPR----LHEKNYELLKSLIH 380 (448)
Q Consensus 306 ~~-rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~k----f~e~~~~llk~L~~ 380 (448)
.+ =+-.|.++...+..--..+...+. +.++.|..-+. ..|+=...|....-|.. ... +.+..-.++..|++
T Consensus 359 ~~~l~~~d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll-~ll~~~~~~v~~e~i~~-l~~ii~~~p~~~~~~v~~L~~ 434 (591)
T 2vgl_B 359 KEYATEVDVDFVRKAVRAIGRCAIKVE--QSAERCVSTLL-DLIQTKVNYVVQEAIVV-IRDIFRKYPNKYESIIATLCE 434 (591)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHH-HHHHTCCHHHHHHHHHH-HHHHHHHSCSSCCTTHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHH-HHHcccchHHHHHHHHH-HHHHHHHCcchHHHHHHHHHH
Confidence 32 122477776665433333333221 12333333221 12221111211222221 111 11112346778888
Q ss_pred hhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 381 LLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 381 lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
.|+...+|.+.+++++=||||..+.++...+++.+ .+-+..++++||..+|.|+-|+-.+
T Consensus 435 ~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l------~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 435 NLDSLDEPDARAAMIWIVGEYAERIDNADELLESF------LEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp TTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH------STTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH------HHhhccCCHHHHHHHHHHHHHHHhc
Confidence 88767889999999999999999988766665433 3344567899999999999998754
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.69 E-value=0.01 Score=64.21 Aligned_cols=283 Identities=14% Similarity=0.190 Sum_probs=172.8
Q ss_pred chhHHHHhhhcCC--chhHHHHHHHHHHHHHhcccCC----CChhhHHHHHHHHHH--------------HhhhcCChhH
Q psy4828 133 PVCSQFLNLLNGS--DGFIINMTAKIIAKIACWSVDL----LNPSDLNFYLTWLKD--------------QLKLANNDYM 192 (448)
Q Consensus 133 ~~~~~fl~lL~~~--d~~I~~~a~~iLt~l~~~~~~~----~~~~~l~~~l~~l~~--------------~L~~~~~~~~ 192 (448)
...++++..|.++ |.=+...++.+|..+++.+... .+.+....+-.|+++ .|.+ .+-|+
T Consensus 60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~df~v 138 (651)
T 3grl_A 60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FDFHV 138 (651)
T ss_dssp HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CCHHH
T ss_pred hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-ccHHH
Confidence 3467788888775 6667777888888777754321 001111222223332 3332 23344
Q ss_pred H-HHHHHHHHhhccch--hhHHHHhh-cchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcC-CCHHHHHHHh
Q psy4828 193 Q-SVARCLQMMLRIDE--YRIAFINV-DGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKF-NVIPTLADIL 267 (448)
Q Consensus 193 ~-~~~~~l~~lL~~~~--~R~~f~~~-~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~-~iI~~L~~il 267 (448)
. .++++|..++.... +++.+... .|++.|+.+|++. .=.+..++++.+=-||-+..-++.+..+ |.++.|.+|+
T Consensus 139 R~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 139 RWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 3 46899998876553 56666644 7999999999753 3456669999999999998888888655 9999999999
Q ss_pred hhhhh-------hh------hcccCCCchhHHHHHHHHHHhcchH-HHHHHHhc----CCCCChHHHHHHHHHHHHHHHH
Q psy4828 268 SDSVK-------EK------NLIEKPTEPALAKENCIAMVQSKVL-KQLSILEQ----RKFDDEDIVEDVQFLNEKLQAS 329 (448)
Q Consensus 268 k~~~K-------EK------NLl~~~~~~~~~~~~~~~mv~~~~l-~~l~~L~~----rk~~Dedl~edl~~L~e~L~~~ 329 (448)
+..-- +- ||+..+++.+. ...+.+.+ ++...|.. -.|++.-+.+-+-.|.=+
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~------~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iI---- 287 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQN------FFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLV---- 287 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHH------HHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHH----
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHH------HHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHH----
Confidence 87533 22 88888765331 23334433 34444432 246644444422222111
Q ss_pred hhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcch
Q psy4828 330 VQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRG 408 (448)
Q Consensus 330 ~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~g 408 (448)
+-|-+ .+|...=+|.|. ..||. .+++..|++++-.+ ....+++.|..-+|+.+|-+|..
T Consensus 288 -rlLv~--------~~~~~~~t~~nQ-~~~~~----------~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~ 347 (651)
T 3grl_A 288 -RVLVS--------PNNPPGATSSCQ-KAMFQ----------CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347 (651)
T ss_dssp -HHHTC--------TTSCHHHHHHHH-HHHHH----------TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred -HHHhC--------CCCCCCCCHHHH-HHHHH----------CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 11100 000000011221 23443 45788999998543 25678999999999999999999
Q ss_pred hHHHHHhC-----cHH----HHHhhhc-CCChhHHHHHHHHHHHHhccC
Q psy4828 409 KHVIEQLG-----GKQ----LVMQLLS-HEDPNVRYEALLAVQKLMVHN 447 (448)
Q Consensus 409 r~il~~lg-----~K~----~vM~Lm~-h~d~eVr~eAL~avQklm~~~ 447 (448)
...+.+.. ... .+|.+++ +...++|..|+.|++..+.+|
T Consensus 348 Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N 396 (651)
T 3grl_A 348 QDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN 396 (651)
T ss_dssp HHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC
Confidence 99887654 222 2444454 456999999999999988665
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.63 E-value=0.0013 Score=65.88 Aligned_cols=347 Identities=9% Similarity=0.034 Sum_probs=170.3
Q ss_pred hhHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhhch-hHHH----HHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHH
Q psy4828 82 RGHAAKTFLNLLEHIS-KDSTIQYILVLIDDILQEDR-SRVE----IFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAK 155 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~-~~d~vqyvL~li~dll~~~~-~~~~----~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~ 155 (448)
.+.|...++.++.+.+ +..+.+....++..++.... .+.+ .+...+.......-..++..|.+++..+ ..++.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~ 111 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence 4578888889998854 46677889999999885431 1111 1111111111123344678888888888 99999
Q ss_pred HHHHHHhcc-cCCCChhhHHHHHHHHHHHhhhc--CChhHHHHHHHHHHhhccc--hhhHHHHhhcchhhHHHhhccCc-
Q psy4828 156 IIAKIACWS-VDLLNPSDLNFYLTWLKDQLKLA--NNDYMQSVARCLQMMLRID--EYRIAFINVDGIRTLLSVLSGRV- 229 (448)
Q Consensus 156 iLt~l~~~~-~~~~~~~~l~~~l~~l~~~L~~~--~~~~~~~~~~~l~~lL~~~--~~R~~f~~~~gv~~L~~lL~~~~- 229 (448)
+++.++... +. ...+.++..|...+.++ +......++.++..+.+.- +.-..+. ...++.+...|.+..
T Consensus 112 ~i~~ia~~~~~~----~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 112 CVAGIACAEIPV----NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHGGG----TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhccc----cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC
Confidence 999998653 21 12234566666666554 3344556778888776531 1100000 112344556665542
Q ss_pred chHHHHHHHHHHHHhh-cChhHHH-hhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcch
Q psy4828 230 NFQIQYQLIFCLWVLT-FNPKLAD-RMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKV 298 (448)
Q Consensus 230 ~~Ql~Y~~ll~lWlLS-F~~~~~~-~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~ 298 (448)
+..+.+.++-|+.-+. |-....+ .....-+++.+.+.+... +|+. .+....+..- ...+..++
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~------~~~~~~~l 260 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM------ETYMGPAL 260 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC------TTTTTTTH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 5777788888876532 2211110 000001344443333211 1111 2222111100 00000033
Q ss_pred HHHHHHHhcCCCCChHHH-HHHHHHHHHHHHHhh-----------------h-cchHHHHHHHHhhCCcccCCCC---CC
Q psy4828 299 LKQLSILEQRKFDDEDIV-EDVQFLNEKLQASVQ-----------------D-LSSFDEYKTEVKSGRLEWSPVH---RS 356 (448)
Q Consensus 299 l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~~~-----------------~-lTsfDeY~~El~SG~L~WSP~H---~s 356 (448)
.+++-..... .|+++. ..++++....+.... . ..-+..|..++..-.+++=.-. -.
T Consensus 261 ~~~~~~~~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~ 338 (462)
T 1ibr_B 261 FAITIEAMKS--DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD 338 (462)
T ss_dssp HHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCC
T ss_pred HHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccc
Confidence 3332222222 255543 344444444332210 0 1112223344332111110000 01
Q ss_pred hhHHH--hch--------hhhhhh-hHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCc-ch-hHHHHHhCcHHHHHh
Q psy4828 357 AQFWR--ENA--------PRLHEK-NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCP-RG-KHVIEQLGGKQLVMQ 423 (448)
Q Consensus 357 e~FW~--EN~--------~kf~e~-~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p-~g-r~il~~lg~K~~vM~ 423 (448)
+.-|. ..+ ..+.+. --.++..+.+.| .+.++.+..-||+-+|.++...+ .. +..+ -..-..+..
T Consensus 339 ~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~ 415 (462)
T 1ibr_B 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI-KNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIE 415 (462)
T ss_dssp TTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHH
Confidence 12231 111 111111 123455555666 46788899999999999987432 11 1111 123457889
Q ss_pred hhcCCChhHHHHHHHHHHHHhc
Q psy4828 424 LLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 424 Lm~h~d~eVr~eAL~avQklm~ 445 (448)
+|+++++.||+.|++|+.++..
T Consensus 416 ~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 416 LMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998863
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.59 E-value=0.0098 Score=65.60 Aligned_cols=328 Identities=15% Similarity=0.144 Sum_probs=168.9
Q ss_pred hHHHHHHHHHhcc--cChhhHHHHHHHHHHHHHhhc-----hhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHH
Q psy4828 83 GHAAKTFLNLLEH--ISKDSTIQYILVLIDDILQED-----RSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAK 155 (448)
Q Consensus 83 ~~~~~~~l~lL~~--~~~~d~vqyvL~li~dll~~~-----~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~ 155 (448)
+.+...+..++.. ..+.++.++...++-..+... ++--..+ -..++..|..+++.|+..++.
T Consensus 44 p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i-----------k~~ll~~l~~~~~~vr~~~a~ 112 (852)
T 4fdd_A 44 PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI-----------KSECLNNIGDSSPLIRATVGI 112 (852)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH-----------HHHHHTTTTCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH-----------HHHHHHHHcCCCHHHHHHHHH
Confidence 4566677788874 345677788888888877532 1111112 234677788889999999999
Q ss_pred HHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhc-------chhhHHHhhccC
Q psy4828 156 IIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVD-------GIRTLLSVLSGR 228 (448)
Q Consensus 156 iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~-------gv~~L~~lL~~~ 228 (448)
+++.++..... ...+.++..|.+.+.+++......++.++..+... ++..+-... .++.+++.++ .
T Consensus 113 ~i~~ia~~~~~----~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~--~~~~~~~~~~~~~~~~il~~l~~~l~-~ 185 (852)
T 4fdd_A 113 LITTIASKGEL----QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED--SAEILDSDVLDRPLNIMIPKFLQFFK-H 185 (852)
T ss_dssp HHHHHHHHTTT----TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH--HTTHHHHCSSSSCHHHHHHHHTTTTT-C
T ss_pred HHHHHHHhcCc----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--hHHHhchhhhcchHHHHHHHHHHHhc-C
Confidence 99999876521 22344666676666654445555677888877643 333333211 1233334443 3
Q ss_pred cchHHHHHHHHHHHHhhcChhHHHhhhc--CCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcc
Q psy4828 229 VNFQIQYQLIFCLWVLTFNPKLADRMNK--FNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSK 297 (448)
Q Consensus 229 ~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~--~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~ 297 (448)
.+..+.+.++-|+..+.-. ..+.+.. .++++.+...+.+. +|.. ++....+..- ...+ .+
T Consensus 186 ~~~~vR~~A~~aL~~~~~~--~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~------~~~l-~~ 256 (852)
T 4fdd_A 186 SSPKIRSHAVACVNQFIIS--RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL------LPHM-HN 256 (852)
T ss_dssp SSHHHHHHHHHHHHTTTTT--TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH------GGGH-HH
T ss_pred CCHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH------HHHH-HH
Confidence 4566777887777533211 1111211 14566666655432 2222 3333222100 0000 12
Q ss_pred hHHHHHHHhcCCCCChHHH-HHHHHHHHHHHHH-hhhcchHHHHHHHHhh---CCc------------------------
Q psy4828 298 VLKQLSILEQRKFDDEDIV-EDVQFLNEKLQAS-VQDLSSFDEYKTEVKS---GRL------------------------ 348 (448)
Q Consensus 298 ~l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~-~~~lTsfDeY~~El~S---G~L------------------------ 348 (448)
+.+.+-.+... .|+++. ..++++...-+.. .++ -+..|...+.. ..+
T Consensus 257 l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~--~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~ 332 (852)
T 4fdd_A 257 IVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKD--VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTI 332 (852)
T ss_dssp HHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHH--HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------
T ss_pred HHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccccccc
Confidence 33333333333 366553 3344444332210 000 01111112111 111
Q ss_pred -ccCCCCCChhHHHhchhhhhhh-hHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchh-HHHHHhCcHHHHHhhh
Q psy4828 349 -EWSPVHRSAQFWRENAPRLHEK-NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGK-HVIEQLGGKQLVMQLL 425 (448)
Q Consensus 349 -~WSP~H~se~FW~EN~~kf~e~-~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr-~il~~lg~K~~vM~Lm 425 (448)
.|++-......-..=+..+.+. --.++..|.+.| .+.++.+-.-|+.-+|.++...+..- ..+. +.-..++.+|
T Consensus 333 ~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~--~~l~~l~~~l 409 (852)
T 4fdd_A 333 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQGMIPYLP--ELIPHLIQCL 409 (852)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHTTTTTHHHHGGGHH--HHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcchHHHHHHHH--HHHHHHHHHc
Confidence 1111110000000001111111 124666677777 46789999999999999998654311 1111 2346788999
Q ss_pred cCCChhHHHHHHHHHHHHh
Q psy4828 426 SHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 426 ~h~d~eVr~eAL~avQklm 444 (448)
+++++.||+.|++|+.++-
T Consensus 410 ~d~~~~Vr~~a~~~l~~l~ 428 (852)
T 4fdd_A 410 SDKKALVRSITCWTLSRYA 428 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998764
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.58 E-value=0.0028 Score=69.93 Aligned_cols=354 Identities=15% Similarity=0.164 Sum_probs=169.8
Q ss_pred CCHHhHHHHHHh-----hcCChHHHHH-------HHhhch----hHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchh
Q psy4828 55 ISKEDYDFITVF-----DTASSAKRAE-------MLNERR----GHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRS 118 (448)
Q Consensus 55 is~~d~~~ik~~-----d~~~~~~r~~-------~~~~~~----~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~ 118 (448)
+++++.+.||.. ......-|.. +...++ +.....++.++++ ++..+.+..+..+..++.+.+.
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~-~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDS-EDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSC-SSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhHH
Confidence 778877777752 2222222322 332221 3466777777766 5667788888888888877664
Q ss_pred HHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHH
Q psy4828 119 RVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARC 198 (448)
Q Consensus 119 ~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~ 198 (448)
...- +.....-....++|+..|.++++-++..|+..++.++...+. .....+..++..+...+..++.+....+.+|
T Consensus 162 ~~~~--~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDS--DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HHHH--CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred Hhch--hhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3210 000000013456788888888999999999999877643221 0112234566666555544334444567788
Q ss_pred HHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcCh--hHHHhhhcC--CCHHHHHHHhhhhhhhh
Q psy4828 199 LQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNP--KLADRMNKF--NVIPTLADILSDSVKEK 274 (448)
Q Consensus 199 l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~--~~~~~l~~~--~iI~~L~~ilk~~~KEK 274 (448)
|..++........-+-.+.++.+...+.+. ...+...++-+ | .++.. .....+..+ .++|.+...+....-+-
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~-l-~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~ 315 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEF-W-LTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHH-H-HHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHH-H-HHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence 888776432211101012334444444432 23333344322 2 22322 122222222 45556555553211000
Q ss_pred hcccCC-----------CchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Q psy4828 275 NLIEKP-----------TEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEV 343 (448)
Q Consensus 275 NLl~~~-----------~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El 343 (448)
-+.... ....++ ..+. ..+..|... ..++-+..-+..+.+.| +. +++..=.+-+
T Consensus 316 ~~~~~d~~ed~~~dd~~~~~~vr-~~a~--------~~L~~la~~-~~~~~~~~l~~~l~~~l----~~-~~~~~R~aa~ 380 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDTISDWNLR-KCSA--------AALDVLANV-YRDELLPHILPLLKELL----FH-HEWVVKESGI 380 (852)
T ss_dssp HHHHC------------CCCCHH-HHHH--------HHHHHHHHH-HGGGGHHHHHHHHHHHH----TC-SSHHHHHHHH
T ss_pred HHhcCCcccccccccccccchHH-HHHH--------HHHHHHHHh-ccHHHHHHHHHHHHHHh----cC-CCHHHHHHHH
Confidence 111111 001111 1111 111111100 00111111112222211 11 1111111001
Q ss_pred hh-CCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcch--hHHHHHhCcHHH
Q psy4828 344 KS-GRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG--KHVIEQLGGKQL 420 (448)
Q Consensus 344 ~S-G~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~g--r~il~~lg~K~~ 420 (448)
.. |.+-=++ . ..++..--+++..|+..| ++.++.|-..||.-+|.|....+.. ...+. +.-..
T Consensus 381 ~alg~i~~~~----~-------~~~~~~l~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~ 446 (852)
T 4fdd_A 381 LVLGAIAEGC----M-------QGMIPYLPELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTE 446 (852)
T ss_dssp HHHHHTTTTT----H-------HHHGGGHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHH
T ss_pred HHHHHHHhcc----h-------HHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHH
Confidence 00 1111000 0 011222357889999999 5678999999999999999865431 11111 12345
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 421 VMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 421 vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
+++.|.+++++||..|+.|+..+.
T Consensus 447 L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 447 LLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 677788899999999999998875
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.47 E-value=0.03 Score=60.37 Aligned_cols=322 Identities=13% Similarity=0.128 Sum_probs=170.7
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcC-------------CchhHH
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNG-------------SDGFII 150 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~-------------~d~~I~ 150 (448)
.+...+..+|+. +++.|+..++.++.++...+|....-+.. ..+..+-+++.. ++++.+
T Consensus 187 ~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~q 258 (621)
T 2vgl_A 187 DWTSRVVHLLND-QHLGVVTAATSLITTLAQKNPEEFKTSVS-------LAVSRLSRIVTSASTDLQDYTYYFVPAPWLS 258 (621)
T ss_dssp SCHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCHHHHTTHHH-------HHHHHHHHHHHCCSSSCSTTEETTEESHHHH
T ss_pred hHHHHHHHHhCC-CCccHHHHHHHHHHHHHHhChHHHHHHHH-------HHHHHHHHHHhCCCCCccchhhcCCCCchHH
Confidence 355666777754 66788899999999999888753211111 112222233322 168888
Q ss_pred HHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhh------------c--CChhHHHHHHHHHHhhccchhhHHHHhhc
Q psy4828 151 NMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKL------------A--NNDYMQSVARCLQMMLRIDEYRIAFINVD 216 (448)
Q Consensus 151 ~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~------------~--~~~~~~~~~~~l~~lL~~~~~R~~f~~~~ 216 (448)
....++++.+...+ +.+..+.+.+.|...+.+ . .+..+..+++++..+-..++++..
T Consensus 259 i~il~ll~~~~~~~----d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~----- 329 (621)
T 2vgl_A 259 VKLLRLLQCYPPPE----DPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR----- 329 (621)
T ss_dssp HHHHHHGGGSSSCS----SHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----
T ss_pred HHHHHHHHHhCCCC----CHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----
Confidence 88888777654211 223334455555443321 0 113333456666666544444443
Q ss_pred chhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhh-hh---hhhh--hcccCCCchhHHHHHH
Q psy4828 217 GIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILS-DS---VKEK--NLIEKPTEPALAKENC 290 (448)
Q Consensus 217 gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk-~~---~KEK--NLl~~~~~~~~~~~~~ 290 (448)
.+..|..+|. .....++|-++-++=.+.-.....+.+.++ .+.+...++ +. +|-+ .++..-.+. .|+
T Consensus 330 ~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~~~~~~~~--~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv 402 (621)
T 2vgl_A 330 ACNQLGQFLQ-HRETNLRYLALESMCTLASSEFSHEAVKTH--IETVINALKTERDVSVRQRAVDLLYAMCDR----SNA 402 (621)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTTHHHHHTT--HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHH
T ss_pred HHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCcHHHHHHH--HHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhH
Confidence 3445556664 335688899988877775443211222222 445555555 21 3333 222221111 122
Q ss_pred HHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHh---chhhh
Q psy4828 291 IAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRE---NAPRL 367 (448)
Q Consensus 291 ~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~E---N~~kf 367 (448)
..++. .+... +.+ .|.++..++-.=...+.+.+. +.++.|..=+ .+.|+=...|..+.-|.. =+.+.
T Consensus 403 ~~Iv~-eL~~y---l~~---~d~~~~~~~v~~I~~la~k~~--~~~~~~v~~L-l~ll~~~~~~v~~ev~~~l~~ii~~~ 472 (621)
T 2vgl_A 403 QQIVA-EMLSY---LET---ADYSIREEIVLKVAILAEKYA--VDYTWYVDTI-LNLIRIAGDYVSEEVWYRVIQIVINR 472 (621)
T ss_dssp HHHHH-HHHHH---HHH---CCHHHHHHHHHHHHHHHHHHC--SSTHHHHHHH-HHHHHHHGGGSCSHHHHHHHHHHGGG
T ss_pred HHHHH-HHHHH---HHh---cCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHH-HHHHHhhcccchHHHHHHHHHHHhCC
Confidence 23322 22222 222 488877665443334443332 4566665433 334444444566777732 11111
Q ss_pred hhhhHHHHHHHHHhhccCCC-hhHHHHHHhhHhhHhhhCcchh-----HHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 368 HEKNYELLKSLIHLLETSRD-PLVLSVASYDIGEYVRHCPRGK-----HVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 368 ~e~~~~llk~L~~lL~~S~D-~~vlaVAc~DIge~vr~~p~gr-----~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
.+-.-..++.|++.|+.+.- ..++.+|++=||||....++.. .+++ .+.+-...++++||..+|.|+=
T Consensus 473 ~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~------~l~~~~~~~~~~v~~~~Lta~~ 546 (621)
T 2vgl_A 473 DDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFN------LLHSKFHLCSVPTRALLLSTYI 546 (621)
T ss_dssp CSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHH------HHHHHHTTSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHH------HHHHHhccCCHHHHHHHHHHHH
Confidence 22223467888999965443 3677899999999987765431 2221 2333445678888888888888
Q ss_pred HHhc
Q psy4828 442 KLMV 445 (448)
Q Consensus 442 klm~ 445 (448)
|+..
T Consensus 547 Kl~~ 550 (621)
T 2vgl_A 547 KFVN 550 (621)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 48
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.42 E-value=0.012 Score=60.83 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=51.8
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
.++..|.+.| ...++.|-..+|.-+|.+++.. |...+. -.....+.+|++.+|++||..|..|+..+
T Consensus 519 ~~~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~--~~~~~~-~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 519 HMLPTVLRMA-GDPVANVRFNVAKSLQKIGPIL--DNSTLQ-SEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HTHHHHHHGG-GCSCHHHHHHHHHHHHHHGGGS--CHHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhC-CCCCchHHHHHHHHHHHHHHHh--chhhhH-HHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 5677788888 4677889999999999999865 444332 13455677788999999999999999875
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.39 E-value=0.032 Score=59.85 Aligned_cols=347 Identities=14% Similarity=0.102 Sum_probs=171.9
Q ss_pred HHHHHhcccChhhHHHHHHHHHHHHHhhchhHH-----HHHHHhhhcCCC---chhHHHHhhhcCCchhHHHHHHHHHHH
Q psy4828 88 TFLNLLEHISKDSTIQYILVLIDDILQEDRSRV-----EIFKEYSQTKRE---PVCSQFLNLLNGSDGFIINMTAKIIAK 159 (448)
Q Consensus 88 ~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~-----~~f~~~~~~~~~---~~~~~fl~lL~~~d~~I~~~a~~iLt~ 159 (448)
.-++.|+++..++++++++..+-.++.+....+ -.+.......++ .-.+.+..+|..+|+.++..|+..|..
T Consensus 126 lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 126 LALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTE 205 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHH
Confidence 344556666666666776666666665543111 111121111221 122333556666788888888888888
Q ss_pred HHhcccCC--CChhhHHHHHHHHHHHhhh----------cCChhHHH-HHHHHHHhhccchhhHHHHhhcchhhHHHhhc
Q psy4828 160 IACWSVDL--LNPSDLNFYLTWLKDQLKL----------ANNDYMQS-VARCLQMMLRIDEYRIAFINVDGIRTLLSVLS 226 (448)
Q Consensus 160 l~~~~~~~--~~~~~l~~~l~~l~~~L~~----------~~~~~~~~-~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~ 226 (448)
+....++. .-..-++.++..|.+...+ ..+++.+. +++++..+.+.+.-- .......|..+++
T Consensus 206 i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~ 281 (618)
T 1w63_A 206 MCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVAT 281 (618)
T ss_dssp HCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHh
Confidence 76433210 0001123344444433221 12455554 468888776653210 0112233444442
Q ss_pred -----cCcchHHHHHHHHHHHHhhcChhHH----Hhh----h-cC-C----CHHHHHHHhhhhhh--hh------hcccC
Q psy4828 227 -----GRVNFQIQYQLIFCLWVLTFNPKLA----DRM----N-KF-N----VIPTLADILSDSVK--EK------NLIEK 279 (448)
Q Consensus 227 -----~~~~~Ql~Y~~ll~lWlLSF~~~~~----~~l----~-~~-~----iI~~L~~ilk~~~K--EK------NLl~~ 279 (448)
.+.+..+.|+++-|+.-++-++... ..+ . .. + .+..|..+++..+. +. .++..
T Consensus 282 ~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d 361 (618)
T 1w63_A 282 NTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD 361 (618)
T ss_dssp TSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGS
T ss_pred ccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccC
Confidence 2356788999999998887655322 111 1 01 1 12222333322111 00 33333
Q ss_pred CCchhHHHHHHHHHH----h-cchHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCC
Q psy4828 280 PTEPALAKENCIAMV----Q-SKVLKQLSILEQR-KFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPV 353 (448)
Q Consensus 280 ~~~~~~~~~~~~~mv----~-~~~l~~l~~L~~r-k~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~ 353 (448)
++.+++.. +.+++ . .++..++..|.+- .-.|+|++.++-.---.+...+. .+++.|..-+. ..|+=++.
T Consensus 362 -~d~~Ir~~-alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~--~~~~~~v~~ll-~lL~~~~~ 436 (618)
T 1w63_A 362 -LDVSIKRR-AMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA--PSKRWHIDTIM-RVLTTAGS 436 (618)
T ss_dssp -SCHHHHHH-HHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC--CCHHHHHHHHH-HHHHHTGG
T ss_pred -CChhHHHH-HHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHH-HHHHhccc
Confidence 23344432 22221 1 1222222222211 01588888777666555555432 46677766654 33444444
Q ss_pred CCChhHHHhchhhh----hhhhHHHHHHHHHhhccC-CChhHHHHHHhhHhhHhhhCcchhHHHHH--------hCcHHH
Q psy4828 354 HRSAQFWRENAPRL----HEKNYELLKSLIHLLETS-RDPLVLSVASYDIGEYVRHCPRGKHVIEQ--------LGGKQL 420 (448)
Q Consensus 354 H~se~FW~EN~~kf----~e~~~~llk~L~~lL~~S-~D~~vlaVAc~DIge~vr~~p~gr~il~~--------lg~K~~ 420 (448)
|....-|.- +..+ .+-.-..++.|++.|... .+.....++++-||||..+.+.|. ++. -.+-..
T Consensus 437 ~v~~~~~~~-l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~--~~~~~~~~~~~~~~~~~ 513 (618)
T 1w63_A 437 YVRDDAVPN-LIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQ--CEEEEPIQVTEDEVLDI 513 (618)
T ss_dssp GSCSSHHHH-HHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCC--CSSSCCCCCCHHHHHHH
T ss_pred hhHHHHHHH-HHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccc--cccccccCCCHHHHHHH
Confidence 555555532 2222 222245788999999642 333445678999999988765430 000 001123
Q ss_pred HHhhhc--CCChhHHHHHHHHHHHHhcc
Q psy4828 421 VMQLLS--HEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 421 vM~Lm~--h~d~eVr~eAL~avQklm~~ 446 (448)
+..++. .++++||-.+|.|+-|+-.+
T Consensus 514 l~~~l~~~~~~~~vr~~~lta~~Kl~~~ 541 (618)
T 1w63_A 514 LESVLISNMSTSVTRGYALTAIMKLSTR 541 (618)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 344443 57888999888888887654
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.22 E-value=0.09 Score=57.03 Aligned_cols=330 Identities=12% Similarity=0.102 Sum_probs=166.4
Q ss_pred hhHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhhch-hHHH----HHHH-hhhcCCCchhHHHHhhhcCCchhHHHHHH
Q psy4828 82 RGHAAKTFLNLLEHIS-KDSTIQYILVLIDDILQEDR-SRVE----IFKE-YSQTKREPVCSQFLNLLNGSDGFIINMTA 154 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~-~~d~vqyvL~li~dll~~~~-~~~~----~f~~-~~~~~~~~~~~~fl~lL~~~d~~I~~~a~ 154 (448)
.+.+...++.++.+.+ +..+.++...++...+...- .+.. .+.. .........-..++..|.+++..++..++
T Consensus 37 ~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~ 116 (861)
T 2bpt_A 37 FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAA 116 (861)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 3678888889998753 46677788888888774321 1111 1111 11111223334578888889999999999
Q ss_pred HHHHHHHhcccCCCChhhHHHHHHHHHHHhhhc-CChhHHHHHHHHHHhhcc--chhhHHHH--hhcchhhHHHhhccC-
Q psy4828 155 KIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLA-NNDYMQSVARCLQMMLRI--DEYRIAFI--NVDGIRTLLSVLSGR- 228 (448)
Q Consensus 155 ~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~-~~~~~~~~~~~l~~lL~~--~~~R~~f~--~~~gv~~L~~lL~~~- 228 (448)
..++.++...- +....+.++..|.+.++++ +......++.++..+.+. ++.| .+- ....++.+...+.+.
T Consensus 117 ~~l~~i~~~~~---p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ll~~l~~~l~~~~ 192 (861)
T 2bpt_A 117 QLIAAIADIEL---PHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ-ALVSSSNNILIAIVQGAQSTE 192 (861)
T ss_dssp HHHHHHHHHHG---GGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhhC---cccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHHHHHHHHHhhcCCC
Confidence 99999986541 1112356777777777654 445556677888877653 1211 010 011223344444443
Q ss_pred cchHHHHHHHHHHHHh-hcCh-hHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcc
Q psy4828 229 VNFQIQYQLIFCLWVL-TFNP-KLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSK 297 (448)
Q Consensus 229 ~~~Ql~Y~~ll~lWlL-SF~~-~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~ 297 (448)
.+..+.+.++-|+.-+ .|-. ..........+++.|.+.+... .|+. .++...+.. ....+...
T Consensus 193 ~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~------~~~~l~~~ 266 (861)
T 2bpt_A 193 TSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF------MKPYMEQA 266 (861)
T ss_dssp CCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG------CHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH
Confidence 2566777888887543 2221 1111111112344444443211 1111 122111110 00111112
Q ss_pred hHHHHHHHhcCCCCChHHH-HHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHH
Q psy4828 298 VLKQLSILEQRKFDDEDIV-EDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLK 376 (448)
Q Consensus 298 ~l~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk 376 (448)
+.+++...... .|+++. ..++++....+.. ..+..+..|- | .|.+. +..| +...=-.++.
T Consensus 267 l~~~~~~~~~~--~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~--~--~~~~~--~~~~-------~~~~~~~il~ 327 (861)
T 2bpt_A 267 LYALTIATMKS--PNDKVASMTVEFWSTICEEE----IDIAYELAQF--P--QSPLQ--SYNF-------ALSSIKDVVP 327 (861)
T ss_dssp HHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHH----HHHHHHHHHC--T--TCSCC--CCCH-------HHHHHHHHHH
T ss_pred HHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHH----Hhhhhhhhhc--c--CCchh--hHHH-------HHHHHHHHHH
Confidence 23322222222 244443 3333333332221 1111122221 2 22111 1111 1111246778
Q ss_pred HHHHhhccC------CChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 377 SLIHLLETS------RDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 377 ~L~~lL~~S------~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.|+..|... +++.+-..|+..++.++..++ ..++.. .-..+.+++++++..+|..|+.|+..+.
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~~--l~~~l~~~l~~~~~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILEP--VLEFVEQNITADNWRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHHH--HHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHHH--HHHHHHHHcCCCChhHHHHHHHHHHHHH
Confidence 888888432 224566678888888888765 334432 2356677788999999999999998875
No 51
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.14 E-value=0.2 Score=48.02 Aligned_cols=230 Identities=12% Similarity=0.084 Sum_probs=148.1
Q ss_pred HHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhh--chhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHH
Q psy4828 73 KRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQE--DRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFII 150 (448)
Q Consensus 73 ~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~--~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~ 150 (448)
.-.++.+.+. .++.+++.+|.. .++.++-++|..+.+++.. +.-+.....+ .++-+++++.++|.-|.
T Consensus 23 ~a~ela~~~e-~~l~~L~~LL~d-kD~~vk~raL~~LeellK~~~~~l~~~~~e~--------~Ld~iI~llk~~dEkva 92 (265)
T 3b2a_A 23 DAVSLALEDK-RALFLILELAGE-DDETTRLRAFVALGEILKRADSDLRMMVLER--------HLDVFINALSQENEKVT 92 (265)
T ss_dssp HHHHHHHHCH-HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--------HHHHHHHTCCSTTHHHH
T ss_pred HHHHHHHhch-hHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhccccccHHHHHH--------HHHHHHHHHhccchhHH
Confidence 3445666664 588999999965 6677889999999999988 3344443433 35668999999999999
Q ss_pred HHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccch-hhHHHHhhcchhhHHHhhccCc
Q psy4828 151 NMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDE-YRIAFINVDGIRTLLSVLSGRV 229 (448)
Q Consensus 151 ~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~-~R~~f~~~~gv~~L~~lL~~~~ 229 (448)
..|.+++-.|+...| ++.+.+.++..-+.+.++++++-...-++..+..+ +.-. +|.+ +..++.++ .+-
T Consensus 93 l~A~r~L~~LLe~vp--L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V------~~~l~sLl-~Sk 162 (265)
T 3b2a_A 93 IKALRALGYLVKDVP--MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLV------RTYINELV-VSP 162 (265)
T ss_dssp HHHHHHHHHHHTTCC--BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHH------HHHHHHHH-TCS
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHH------HHHHHHHH-hCC
Confidence 999999999998664 68888999999999888764433444567777766 4433 4543 34566777 444
Q ss_pred chHHHHHHHHH-HHHhhcCh--hHHHhhhcCCCHHHHHHHhhhhhhhh------hcccCCCchhHHHHHHHHHHhcchHH
Q psy4828 230 NFQIQYQLIFC-LWVLTFNP--KLADRMNKFNVIPTLADILSDSVKEK------NLIEKPTEPALAKENCIAMVQSKVLK 300 (448)
Q Consensus 230 ~~Ql~Y~~ll~-lWlLSF~~--~~~~~l~~~~iI~~L~~ilk~~~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l~ 300 (448)
+.|++=.++-+ +=+-+|.. ++.+.+.+. |+.+..-=..-.+|| .+++.+-..++-.+. .+++.
T Consensus 163 d~~vK~agl~~L~eia~~S~D~~i~~~I~~e--I~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~------~~~~~ 234 (265)
T 3b2a_A 163 DLYTKVAGFCLFLNMLNSSADSGHLTLILDE--IPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL------LKISR 234 (265)
T ss_dssp SHHHHHHHHHHHHHHGGGCSSCCCGGGTTTT--HHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH------HHHHH
T ss_pred ChhHHHHHHHHHHHhhcccCCHHHHHHHHHH--HHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH------HHHHH
Confidence 55553333222 22233332 333332211 333222222235666 555554432222111 46788
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHhh
Q psy4828 301 QLSILEQRKFDDEDIVEDVQFLNEKLQASVQ 331 (448)
Q Consensus 301 ~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~ 331 (448)
.+.+|-+++ +.|.+.+-...+.+.|+..+.
T Consensus 235 ~v~~l~~~~-~~~~~~~ka~~v~~~le~~~~ 264 (265)
T 3b2a_A 235 IVDGLVYRE-GAPIIRLKAKKVSDLIDSVIS 264 (265)
T ss_dssp HHHHGGGCS-SCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhc-CChhHHHHHHHHHHHHHHhhc
Confidence 899999553 489999999999999988753
No 52
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.10 E-value=0.12 Score=55.56 Aligned_cols=294 Identities=13% Similarity=0.082 Sum_probs=159.7
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHH
Q psy4828 99 DSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLT 178 (448)
Q Consensus 99 ~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~ 178 (448)
....|-+.-.+..+...+|+.+-+.. ..|.+=|++++++++-.|++.++.+. +.+-.+.++.
T Consensus 88 ~~~Krl~YL~l~~~~~~~~e~~~L~i-----------N~l~kDl~~~n~~ir~lALr~L~~i~-------~~e~~~~l~~ 149 (621)
T 2vgl_A 88 YTEKQIGYLFISVLVNSNSELIRLIN-----------NAIKNDLASRNPTFMGLALHCIANVG-------SREMAEAFAG 149 (621)
T ss_dssp HHHHHHHHHHHHHSCCCCHHHHHHHH-----------HHHHHHHHSCCHHHHHHHHHHHHHHC-------CHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHccCCcHHHHHHH-----------HHHHHhcCCCCHHHHHHHHHHhhccC-------CHHHHHHHHH
Confidence 33334444444455555555443222 23667778889999999999999984 2445567777
Q ss_pred HHHHHhhh-cCChhHH-HHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhc
Q psy4828 179 WLKDQLKL-ANNDYMQ-SVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNK 256 (448)
Q Consensus 179 ~l~~~L~~-~~~~~~~-~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~ 256 (448)
.+...+.+ ..+.|+. .|+-|+..+.+.. ...+-..+.+..+..+|.+ .+...++.++.++--+.-+.. +.+
T Consensus 150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~--p~~~~~~~~~~~l~~lL~d-~d~~V~~~a~~~l~~i~~~~~--~~~-- 222 (621)
T 2vgl_A 150 EIPKILVAGDTMDSVKQSAALCLLRLYRTS--PDLVPMGDWTSRVVHLLND-QHLGVVTAATSLITTLAQKNP--EEF-- 222 (621)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHHHHHHHHC--GGGCCCCSCHHHHHHHTTC-SCHHHHHHHHHHHHHHHHHCH--HHH--
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHhC--hhhcCchhHHHHHHHHhCC-CCccHHHHHHHHHHHHHHhCh--HHH--
Confidence 77777732 2456664 5677777766632 2222112445667777753 344556677766544433211 111
Q ss_pred CCCHHHHHHHhhhhhhhhhcccCCC-chhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcc-
Q psy4828 257 FNVIPTLADILSDSVKEKNLIEKPT-EPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLS- 334 (448)
Q Consensus 257 ~~iI~~L~~ilk~~~KEKNLl~~~~-~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lT- 334 (448)
..++|.++++++.-.-.+ .++ ..+........-.++.+++++..+... .|++..+.+ .+.|+.-+..++
T Consensus 223 ~~~~~~~~~~L~~ll~~~----~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~--~d~~~~~~l---~~~L~~il~~~~~ 293 (621)
T 2vgl_A 223 KTSVSLAVSRLSRIVTSA----STDLQDYTYYFVPAPWLSVKLLRLLQCYPPP--EDPAVRGRL---TECLETILNKAQE 293 (621)
T ss_dssp TTHHHHHHHHHHHHHHCC----SSSCSTTEETTEESHHHHHHHHHHGGGSSSC--SSHHHHHHH---HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCC----CCCccchhhcCCCCchHHHHHHHHHHHhCCC--CCHHHHHHH---HHHHHHHHHhhcc
Confidence 145777777765432110 010 000000000023344555666555432 366655432 222222221110
Q ss_pred -----------hHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhh
Q psy4828 335 -----------SFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVR 403 (448)
Q Consensus 335 -----------sfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr 403 (448)
+---..=|.-.-.+.++|.+ +---..++.|..+| .+.|+.+.-+|+.-|..++.
T Consensus 294 ~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~--------------~~~~~~~~~L~~~L-~~~~~niry~aL~~l~~l~~ 358 (621)
T 2vgl_A 294 PPKSKKVQHSNAKNAVLFEAISLIIHHDSEP--------------NLLVRACNQLGQFL-QHRETNLRYLALESMCTLAS 358 (621)
T ss_dssp CCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH--------------HHHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHTT
T ss_pred CcccccccccchHHHHHHHHHHHHHhcCCcH--------------HHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHHh
Confidence 00011111111111111110 11125677888888 47899999999999999999
Q ss_pred hCcchhHHHHHhCcHHHHHhhhc-CCChhHHHHHHHHHHHHh
Q psy4828 404 HCPRGKHVIEQLGGKQLVMQLLS-HEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 404 ~~p~gr~il~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm 444 (448)
.+|.. ..+.+ -...++..+. ++|+.||..||..+-+|.
T Consensus 359 ~~~~~-~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 359 SEFSH-EAVKT--HIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp CTTTH-HHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred ccCcH-HHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 88752 34443 4678889898 999999999999887765
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.10 E-value=0.1 Score=53.74 Aligned_cols=89 Identities=10% Similarity=0.043 Sum_probs=51.6
Q ss_pred hhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHH
Q psy4828 134 VCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFI 213 (448)
Q Consensus 134 ~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~ 213 (448)
..+.|..+++.+++.++..|...|..+...-+ +....+.++..+...+..++......++.++..+...-... ..
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~ 278 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLP---QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--IT 278 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSC---HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cc
Confidence 34567778888899999999999998875432 12233456666665554332333445677777665432111 12
Q ss_pred hhcchhhHHHhhcc
Q psy4828 214 NVDGIRTLLSVLSG 227 (448)
Q Consensus 214 ~~~gv~~L~~lL~~ 227 (448)
....++.+..++.+
T Consensus 279 ~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 279 KTDLVPAFQNLMKD 292 (588)
T ss_dssp HHTHHHHHHHHHTC
T ss_pred hhHHHHHHHHHhCC
Confidence 22345556666653
No 54
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.97 E-value=0.12 Score=56.28 Aligned_cols=334 Identities=10% Similarity=0.097 Sum_probs=164.7
Q ss_pred hhHHHHHHHHHhcccC-hhhHHHHHHHHHHHHHhhc-hhHHHHH----HHhhhcCCCchhHHHHhhhcCCchhHHHHHHH
Q psy4828 82 RGHAAKTFLNLLEHIS-KDSTIQYILVLIDDILQED-RSRVEIF----KEYSQTKREPVCSQFLNLLNGSDGFIINMTAK 155 (448)
Q Consensus 82 ~~~~~~~~l~lL~~~~-~~d~vqyvL~li~dll~~~-~~~~~~f----~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~ 155 (448)
.+.+...++.++.+.+ +..+.+....++...+... +.|-..+ ...........-..++..|.+++..+ ..++.
T Consensus 33 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~ 111 (876)
T 1qgr_A 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQ 111 (876)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHH
T ss_pred hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHH
Confidence 3567778888887743 4566778888888877433 1121111 11100001111233778888888888 99999
Q ss_pred HHHHHHhcccCCCChhhHHHHHHHHHHHhhhc--CChhHHHHHHHHHHhhccchhhHHHHhh--cchhhHHHhhccC-cc
Q psy4828 156 IIAKIACWSVDLLNPSDLNFYLTWLKDQLKLA--NNDYMQSVARCLQMMLRIDEYRIAFINV--DGIRTLLSVLSGR-VN 230 (448)
Q Consensus 156 iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~--~~~~~~~~~~~l~~lL~~~~~R~~f~~~--~gv~~L~~lL~~~-~~ 230 (448)
+++.++...-. ....+.++..|...+.++ +......+++++..+...-. ...|... ..++.+...+.+. .+
T Consensus 112 ~l~~i~~~~~~---~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~ 187 (876)
T 1qgr_A 112 CVAGIACAEIP---VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPS 187 (876)
T ss_dssp HHHHHHHHHGG---GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred HHHHHHHhhCc---ccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHHhhcCCCCC
Confidence 99999764311 112334555566666554 33445567788887764311 1112111 1233444555543 25
Q ss_pred hHHHHHHHHHHHHhh-cCh-hHHHhhhcCCCHHHHHHHhhhh---hhhh------hcccCCCchhHHHHHHHHHHhcchH
Q psy4828 231 FQIQYQLIFCLWVLT-FNP-KLADRMNKFNVIPTLADILSDS---VKEK------NLIEKPTEPALAKENCIAMVQSKVL 299 (448)
Q Consensus 231 ~Ql~Y~~ll~lWlLS-F~~-~~~~~l~~~~iI~~L~~ilk~~---~KEK------NLl~~~~~~~~~~~~~~~mv~~~~l 299 (448)
..+.+.++-|+.-+. |-+ ..........+++.+.+.+... +|+. .++...+. .....+...+.
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~l~ 261 (876)
T 1qgr_A 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ------YMETYMGPALF 261 (876)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG------GCHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHH
Confidence 677778888776443 211 1111110112455555544221 1111 22222211 00111121333
Q ss_pred HHHHHHhcCCCCChHHH-HHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHH
Q psy4828 300 KQLSILEQRKFDDEDIV-EDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSL 378 (448)
Q Consensus 300 ~~l~~L~~rk~~Dedl~-edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L 378 (448)
+.+-... +..|+++. ..++++....+..... . .+.+ .....|. +|....-.|.+... -+++..|
T Consensus 262 ~~~~~~~--~~~~~~v~~~al~~l~~l~~~~~~~-~-~~~~-~~~~~~~---~~~~~~~~~~~~~~-------~~ll~~l 326 (876)
T 1qgr_A 262 AITIEAM--KSDIDEVALQGIEFWSNVCDEEMDL-A-IEAS-EAAEQGR---PPEHTSKFYAKGAL-------QYLVPIL 326 (876)
T ss_dssp HHHHHHH--TCSSHHHHHHHHHHHHHHHHHHHHH-H-HHHH-HHHHHSS---CCSSCCCCHHHHHH-------HHHHHHH
T ss_pred HHHHHHh--cCCchHHHHHHHHHHHHHHHHHHhH-h-hhhc-cccccCC---CccchhHHHHHHHH-------HHHhHHH
Confidence 3332222 22355543 3445555443332110 0 1111 1111221 34333333433221 3567777
Q ss_pred HHhhcc------CCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 379 IHLLET------SRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 379 ~~lL~~------S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.+.|.. +.+..+--.|+.-++.+++..| ..++.. .-..+.+.++++++.||+.|+.|+..+..
T Consensus 327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~--~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPH--VLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHH--HHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHHH--HHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 777732 2234555566777788877655 233332 23466677889999999999999987753
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=96.59 E-value=0.084 Score=47.48 Aligned_cols=185 Identities=14% Similarity=0.091 Sum_probs=111.3
Q ss_pred CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhH
Q psy4828 131 REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRI 210 (448)
Q Consensus 131 ~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~ 210 (448)
++...+.++.+|.++|+.++..|...|..+-. .+.++.+ ...+..++......++.+|..+-
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L----~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPL----IKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHH----HHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHH----HHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 34567788899999999999999998887631 2333443 34444433333334566666532
Q ss_pred HHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHH
Q psy4828 211 AFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENC 290 (448)
Q Consensus 211 ~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~ 290 (448)
..+.++.|...|.+ .+..+.+.++.++.-+. ..+.+|.|...+++ ++..+..
T Consensus 79 ---~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d-----------~~~~vr~--- 130 (211)
T 3ltm_A 79 ---DERAVEPLIKALKD-EDGWVRQSAAVALGQIG----------DERAVEPLIKALKD-----------EDWFVRI--- 130 (211)
T ss_dssp ---CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTC-----------SSHHHHH---
T ss_pred ---CHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhC-----------CCHHHHH---
Confidence 23456667777753 23455556666555442 12345555555431 1111111
Q ss_pred HHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhh
Q psy4828 291 IAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEK 370 (448)
Q Consensus 291 ~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~ 370 (448)
.....|..+.
T Consensus 131 ------~a~~aL~~~~---------------------------------------------------------------- 140 (211)
T 3ltm_A 131 ------AAAFALGEIG---------------------------------------------------------------- 140 (211)
T ss_dssp ------HHHHHHHHHC----------------------------------------------------------------
T ss_pred ------HHHHHHHHcC----------------------------------------------------------------
Confidence 1111111111
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 371 NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 371 ~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
+-+.+..|.++| ++.|+.|-.-|+.-||.+-. -.+...+.++++++|++||..|..|+.++
T Consensus 141 ~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 141 DERAVEPLIKAL-KDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp CGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 024577788888 57788899999999998732 12456788899999999999999998765
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.47 E-value=0.51 Score=46.77 Aligned_cols=292 Identities=10% Similarity=0.052 Sum_probs=148.8
Q ss_pred HHHhhhcCC--chhHHHHHHHHHHHHHhccc-----------CCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhh
Q psy4828 137 QFLNLLNGS--DGFIINMTAKIIAKIACWSV-----------DLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMML 203 (448)
Q Consensus 137 ~fl~lL~~~--d~~I~~~a~~iLt~l~~~~~-----------~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL 203 (448)
.++.+|.++ +..++..|+.+|-.++.... ...+.+..+.+-+.|...+.++++.. ..+..++..+.
T Consensus 39 ~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 345555543 67899999999999874320 12345555556566666666544444 55678888777
Q ss_pred ccchhhHHHHhhcchhhHHHhhccCc-chHHHHHHHHHHHHhhcC--hhHHHhhhcCCCHHHHHHHhhhh-----hhhh-
Q psy4828 204 RIDEYRIAFINVDGIRTLLSVLSGRV-NFQIQYQLIFCLWVLTFN--PKLADRMNKFNVIPTLADILSDS-----VKEK- 274 (448)
Q Consensus 204 ~~~~~R~~f~~~~gv~~L~~lL~~~~-~~Ql~Y~~ll~lWlLSF~--~~~~~~l~~~~iI~~L~~ilk~~-----~KEK- 274 (448)
+...-+. -| .+.++.|++.+.+.. +....+.++.++-.+.-+ ++...... ..+++.+...++.. +|..
T Consensus 118 ~~~~~~~-~w-~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a 194 (462)
T 1ibr_B 118 CAEIPVN-QW-PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAA 194 (462)
T ss_dssp HHHGGGT-CC-TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred HHhcccc-cc-HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHH
Confidence 6532111 12 234566666665542 556666777777665421 22111111 14677777777554 2222
Q ss_pred -----hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHH-HHHHHHHHHHHhhhcch-----HHHHHHHH
Q psy4828 275 -----NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVED-VQFLNEKLQASVQDLSS-----FDEYKTEV 343 (448)
Q Consensus 275 -----NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed-l~~L~e~L~~~~~~lTs-----fDeY~~El 343 (448)
+++....+ ... ..+...-+++.+..+... .|+++... +..|....+...+.+.. +=.+....
T Consensus 195 ~~~l~~~~~~~~~-~~~----~~~~~~~l~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (462)
T 1ibr_B 195 TNALLNSLEFTKA-NFD----KESERHFIMQVVCEATQC--PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (462)
T ss_dssp HHHHHHHTTTTHH-HHT----SHHHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hhh----hhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322111 000 011111134444443332 36665543 33333333333222111 00111111
Q ss_pred hhCCcccCCCCCChhHHHhchhhh------hh-------------------hhHHHHHHHHHhhcc------CCChhHHH
Q psy4828 344 KSGRLEWSPVHRSAQFWRENAPRL------HE-------------------KNYELLKSLIHLLET------SRDPLVLS 392 (448)
Q Consensus 344 ~SG~L~WSP~H~se~FW~EN~~kf------~e-------------------~~~~llk~L~~lL~~------S~D~~vla 392 (448)
... -...-....-.||..=+... .+ .--.++..|.+.|.. +++..+-.
T Consensus 268 ~~~-~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~ 346 (462)
T 1ibr_B 268 MKS-DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 346 (462)
T ss_dssp HHC-SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HcC-CchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHH
Confidence 000 00000011123665433321 00 113566677777732 22346667
Q ss_pred HHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 393 VASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 393 VAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.|+.-++.+++.+| +.++.. .-..+.+.++++|..+|+.|+.|+..+.
T Consensus 347 ~a~~~L~~l~~~~~--~~~~~~--~~~~l~~~l~~~~~~~r~aal~~l~~l~ 394 (462)
T 1ibr_B 347 AAGVCLMLLATCCE--DDIVPH--VLPFIKEHIKNPDWRYRDAAVMAFGCIL 394 (462)
T ss_dssp HHHHHHHHHHHHTT--TTHHHH--HHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcc--HHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 78888999999877 355543 4467778889999999999999999875
No 57
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.36 E-value=0.096 Score=46.71 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=112.4
Q ss_pred CCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhH
Q psy4828 131 REPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRI 210 (448)
Q Consensus 131 ~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~ 210 (448)
....+++++.+|+++|+.++..|...|..+-. ...++. |...|..+++.....++.+|..+-
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~----L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEP----LIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHH----HHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHH----HHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 44567889999999999999999999987631 233344 344444433333344566666432
Q ss_pred HHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHH
Q psy4828 211 AFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENC 290 (448)
Q Consensus 211 ~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~ 290 (448)
..+.++.|...|.+ .+..+.+.++.++.-+. ..+.++.|...+++ +++.++.
T Consensus 74 ---~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d-----------~~~~vr~--- 125 (201)
T 3ltj_A 74 ---DERAVEPLIKALKD-EDGWVRQSAAVALGQIG----------DERAVEPLIKALKD-----------EDWFVRI--- 125 (201)
T ss_dssp ---CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTC-----------SSHHHHH---
T ss_pred ---CHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcC-----------CCHHHHH---
Confidence 22456677777754 34555556666655432 12345555554421 1111111
Q ss_pred HHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhh
Q psy4828 291 IAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEK 370 (448)
Q Consensus 291 ~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~ 370 (448)
.....|..+. +
T Consensus 126 ------~a~~aL~~~~-----~---------------------------------------------------------- 136 (201)
T 3ltj_A 126 ------AAAFALGEIG-----D---------------------------------------------------------- 136 (201)
T ss_dssp ------HHHHHHHHHT-----C----------------------------------------------------------
T ss_pred ------HHHHHHHHhC-----C----------------------------------------------------------
Confidence 1111111110 0
Q ss_pred hHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 371 NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 371 ~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
-+.+..|.++| .+.|+.+-.-|+.-||.+-. | .+...+.++++++|+.||..|..++.++
T Consensus 137 -~~~~~~L~~~l-~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 -ERAVEPLIKAL-KDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 23567788888 46788999999999998821 1 2456778888999999999999999876
No 58
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.89 E-value=1.5 Score=47.38 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcch-hHHHHHhCcHHHHHhhhcCCC--hhHHHHHHHHHHHHhc
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG-KHVIEQLGGKQLVMQLLSHED--PNVRYEALLAVQKLMV 445 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~g-r~il~~lg~K~~vM~Lm~h~d--~eVr~eAL~avQklm~ 445 (448)
+++..|.+.| .+.++.+...|+.-+|.+++..+.. +..+.. .-..+++.+.+++ ++||..|+.|+..+..
T Consensus 639 ~i~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~ 711 (861)
T 2bpt_A 639 TFSPYLLKAL-NQVDSPVSITAVGFIADISNSLEEDFRRYSDA--MMNVLAQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHHHHHH-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHH--HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHhchhccchHHH--HHHHHHHHhCCccccHhhhHHHHHHHHHHHH
Confidence 5778888888 4677778888888888888865421 111111 2234567777765 9999999999987753
No 59
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.88 E-value=0.16 Score=53.96 Aligned_cols=256 Identities=14% Similarity=0.195 Sum_probs=139.6
Q ss_pred HHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcc
Q psy4828 85 AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWS 164 (448)
Q Consensus 85 ~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~ 164 (448)
+..-.++++.+ ++..+.+-+--.+..+...+|+.+.+ ....|.+-|++++++++..|++.|+.+.
T Consensus 50 ~~~~vi~l~~s-~~~~~Krl~yl~l~~~~~~~~e~~~l-----------~~n~l~kdL~~~n~~ir~~AL~~L~~i~--- 114 (591)
T 2vgl_B 50 LFPDVVNCMQT-DNLELKKLVYLYLMNYAKSQPDMAIM-----------AVNSFVKDCEDPNPLIRALAVRTMGCIR--- 114 (591)
T ss_dssp GHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHSHHHHHT-----------THHHHGGGSSSSSHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHcccCchHHHH-----------HHHHHHHHcCCCCHHHHHHHHHHHHcCC---
Confidence 33334454433 34444444444455555555555432 2345778889999999999988887663
Q ss_pred cCCCChhhHHHHHHHHHHHhhhcCChhH-HHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHH
Q psy4828 165 VDLLNPSDLNFYLTWLKDQLKLANNDYM-QSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWV 243 (448)
Q Consensus 165 ~~~~~~~~l~~~l~~l~~~L~~~~~~~~-~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWl 243 (448)
..+-.+.++.-+...+.. .+.++ ..++.|+..+.+.. ...+-..+.++.+..+|.+ .+...++.++.++=-
T Consensus 115 ----~~~~~~~l~~~l~~~L~d-~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 115 ----VDKITEYLCEPLRKCLKD-EDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLRDLIAD-SNPMVVANAVAALSE 186 (591)
T ss_dssp ----SGGGHHHHHHHHHHHSSC-SCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTSC-SCHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHHHhhC--hhhcccccHHHHHHHHhCC-CChhHHHHHHHHHHH
Confidence 234456666667777765 34555 45778888776632 1222222345667777753 345566677666544
Q ss_pred hhcChhHHHhhhcCCCHHH-HHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHH
Q psy4828 244 LTFNPKLADRMNKFNVIPT-LADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFL 322 (448)
Q Consensus 244 LSF~~~~~~~l~~~~iI~~-L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L 322 (448)
+.-+.. +. ....+++. +..+++.- .+ + + ...+..+++++..+... ++
T Consensus 187 i~~~~~--~~-~~~~l~~~~~~~Ll~~l-~~------~-~---------~~~q~~il~~l~~l~~~---~~--------- 234 (591)
T 2vgl_B 187 ISESHP--NS-NLLDLNPQNINKLLTAL-NE------C-T---------EWGQIFILDCLSNYNPK---DD--------- 234 (591)
T ss_dssp HTTSCC--SC-CSCCCHHHHHHHHHHHH-HH------C-C---------HHHHHHHHHHHHTSCCC---SH---------
T ss_pred HHhhCC--Cc-cchhccHHHHHHHHHcC-CC------C-C---------chHHHHHHHHHHHhCCC---Ch---------
Confidence 432211 00 00122222 11121111 01 1 1 11122334444333211 11
Q ss_pred HHHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHhchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHh
Q psy4828 323 NEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYV 402 (448)
Q Consensus 323 ~e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~v 402 (448)
+.-.+++..|..+| .+.|+.|+--||.-|+.+.
T Consensus 235 ----------------------------------------------~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 235 ----------------------------------------------REAQSICERVTPRL-SHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp ----------------------------------------------HHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSC
T ss_pred ----------------------------------------------HHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHh
Confidence 01135666777777 4677888888888888887
Q ss_pred hh---CcchhHHH-HHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 403 RH---CPRGKHVI-EQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 403 r~---~p~gr~il-~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.. .|++-..+ .++ ...++.|++ +|++|||-||.++.++..
T Consensus 268 ~~~~~~~~~~~~~~~~~--~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 268 ELLPKDSDYYNMLLKKL--APPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp CSCCBTTBSHHHHHHHT--HHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHH--HHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 53 35554433 333 245556765 899999999999998874
No 60
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.61 E-value=1.1 Score=51.21 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhH-HHHHhCcHHHHHhhhcCCC--hhHHHHHHHHHHHHh
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKH-VIEQLGGKQLVMQLLSHED--PNVRYEALLAVQKLM 444 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~-il~~lg~K~~vM~Lm~h~d--~eVr~eAL~avQklm 444 (448)
-+++..+.+.|. +.++.+..-+|.-+|++++..|..-. .++. .-..++++|.+++ ++||.+|+.++..++
T Consensus 433 ~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~--ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 433 PNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVLPGALTQHIPV--LVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp THHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH--HHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHchhhhHHHHHH--HHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 356677777784 56677777799999999998664321 1111 2356788888776 499999999988775
No 61
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.42 E-value=3.7 Score=44.33 Aligned_cols=72 Identities=17% Similarity=0.059 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccCC-ChhHHHHHHhhHhhHhhhCcc--hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 373 ELLKSLIHLLETSR-DPLVLSVASYDIGEYVRHCPR--GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 373 ~llk~L~~lL~~S~-D~~vlaVAc~DIge~vr~~p~--gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.++..|..+.+.+. +..+-..|+.-||.++++++. .+..+.+--....+-+.+.++|++||..|.+|+..+.
T Consensus 796 ~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~ 870 (876)
T 1qgr_A 796 FILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELR 870 (876)
T ss_dssp HHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHH
Confidence 45555555554333 778889999999999998744 1222111112334443667999999999999998774
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.28 E-value=1.2 Score=41.01 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=54.3
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhC-cc--hhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHC-PR--GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~-p~--gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.++..|...|+ +.++.+-.-++.=|+.++..+ |. +...+.. .-..++++|++++++||..|..|+..++.
T Consensus 133 ~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~--l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 133 AQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKL--LTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH--HHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 46667777784 568889999999999977665 43 3444443 34688999999999999999999999874
No 63
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.36 E-value=14 Score=42.21 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchh---HHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGK---HVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr---~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.+++..|.+.| .++|..+-.-||.-++.+++.+|..- .+..-+. .+..+++.+|.+++..++.++.+++-
T Consensus 649 ~~i~~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~---~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 649 GEGVPILASFL-RKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLD---ELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHT---TCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHH---HHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 56777788888 46788888899999999999987431 2211111 12244568899999999999998874
No 64
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.79 E-value=6.1 Score=36.63 Aligned_cols=129 Identities=9% Similarity=0.059 Sum_probs=66.7
Q ss_pred hHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHh-hhcCChhHHHHH
Q psy4828 118 SRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL-KLANNDYMQSVA 196 (448)
Q Consensus 118 ~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L-~~~~~~~~~~~~ 196 (448)
.|......++....+...++++.+|.++++.++..|...|..+-. ....+..++..|.+.+ ..+++.....++
T Consensus 39 vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~------~~~~~~~l~~~L~~~~~~d~~~~vr~~a~ 112 (280)
T 1oyz_A 39 KRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKI------CKKCEDNVFNILNNMALNDKSACVRATAI 112 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC------CTTTHHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 344444444444455567778888888888888888877776531 1123444555555432 222223334456
Q ss_pred HHHHHhhccc-hhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhh
Q psy4828 197 RCLQMMLRID-EYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILS 268 (448)
Q Consensus 197 ~~l~~lL~~~-~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk 268 (448)
.+|..+-... .+ ....++.|...|.+ .+..+.+.++.++.-+. ..+.+|.|...++
T Consensus 113 ~aL~~l~~~~~~~-----~~~~~~~L~~~l~d-~~~~vR~~a~~aL~~~~----------~~~~~~~L~~~l~ 169 (280)
T 1oyz_A 113 ESTAQRCKKNPIY-----SPKIVEQSQITAFD-KSTNVRRATAFAISVIN----------DKATIPLLINLLK 169 (280)
T ss_dssp HHHHHHHHHCGGG-----HHHHHHHHHHHTTC-SCHHHHHHHHHHHHTC-------------CCHHHHHHHHT
T ss_pred HHHHHHhccCCcc-----cHHHHHHHHHHhhC-CCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHc
Confidence 6666543211 11 11234555555543 34555556666554332 1246777777654
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.36 E-value=4.3 Score=37.10 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhc
Q psy4828 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACW 163 (448)
Q Consensus 84 ~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~ 163 (448)
..+..+.+++.+-++..+.+.++..+..|...-.....-+.+ .-.++++..|......++..|...|..++..
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~-------~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS-------ACVPSLLEKFKEKKPNVVTALREAIDAIYAS 128 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH-------HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Confidence 557777788863377888899999999988654332221222 4567889999988999999999999998753
Q ss_pred ccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc--ch-hhHHHHhhcchhhHHHhhccCcchHHHHHHHHH
Q psy4828 164 SVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI--DE-YRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFC 240 (448)
Q Consensus 164 ~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~--~~-~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~ 240 (448)
. .++.++..+...++..++.....++..+..++.. ++ .=..++ ...++.|...|.+. ...+.=.+.-|
T Consensus 129 ~-------~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~-~~~VR~~A~~~ 199 (242)
T 2qk2_A 129 T-------SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP-DPTVRDSSAEA 199 (242)
T ss_dssp S-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS-CHHHHHHHHHH
T ss_pred C-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 2 2466777777777654444555677888876554 22 111111 13455566666432 22333367777
Q ss_pred HHHhh
Q psy4828 241 LWVLT 245 (448)
Q Consensus 241 lWlLS 245 (448)
++.+.
T Consensus 200 l~~l~ 204 (242)
T 2qk2_A 200 LGTLI 204 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 66
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.27 E-value=1.5 Score=42.27 Aligned_cols=174 Identities=11% Similarity=0.147 Sum_probs=120.0
Q ss_pred cccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHH-------HHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccCh
Q psy4828 26 IAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYD-------FITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISK 98 (448)
Q Consensus 26 ~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~-------~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~ 98 (448)
.+.+..|+++-+....=.+| .+|..... +++-+-+ .++.|..+++.+-+.|..+|++..++...
T Consensus 44 Gtia~LLQEIisiYp~lspp--------~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~ 114 (268)
T 2fv2_A 44 GTIAALLQEIVNIYPSINPP--------TLTAHQSNRVCNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRP 114 (268)
T ss_dssp THHHHHHHHHHHTGGGBTTB--------CCCHHHHHHHHHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHH
T ss_pred CHHHHHHHHHHHHcccCCCc--------ccCHHHHhHHHHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCc
Confidence 34456677777766655443 45555443 4666665 45688899999999999999998888544
Q ss_pred hhHH-HHHHHHHHHHHh-hchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccC----CCChhh
Q psy4828 99 DSTI-QYILVLIDDILQ-EDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVD----LLNPSD 172 (448)
Q Consensus 99 ~d~v-qyvL~li~dll~-~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~----~~~~~~ 172 (448)
-+.+ =.+|-.|+.|+. |+++-+.++.+. +-.+..++.+......-+..|.+|+.+++.+... +.+.+-
T Consensus 115 fE~LRLtsLGVIgaLvK~dd~eVi~fLL~t------EiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eR 188 (268)
T 2fv2_A 115 FEYLRLTSLGVIGALVKTDEQEVINFLLTT------EIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 188 (268)
T ss_dssp HHHHHHHHHHHHHHHGGGCCHHHHHHHHHT------THHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHH
T ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHhh------hHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHH
Confidence 4444 567888999984 556777777664 6778889999999999999999999999864310 112221
Q ss_pred HHHHHHHHHHHh----hhcCChhHHHHHHHHHHhhccchhhHHHHh
Q psy4828 173 LNFYLTWLKDQL----KLANNDYMQSVARCLQMMLRIDEYRIAFIN 214 (448)
Q Consensus 173 l~~~l~~l~~~L----~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~ 214 (448)
+......|.+.. ..+++.....+++|+.+|..++..|..+-.
T Consensus 189 F~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 189 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 222223333322 123445567789999999999999998764
No 67
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=92.05 E-value=3.4 Score=44.63 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=69.8
Q ss_pred HhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHH-Hhhcc-CcchHHHHHHHHHHHHhhcC--hhHHHhhhcCC
Q psy4828 183 QLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLL-SVLSG-RVNFQIQYQLIFCLWVLTFN--PKLADRMNKFN 258 (448)
Q Consensus 183 ~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~-~lL~~-~~~~Ql~Y~~ll~lWlLSF~--~~~~~~l~~~~ 258 (448)
.|+++++.....+..++.++...++.|+.+...+++..++ .+|.+ ...++. ++.-++.-|+.+ ++++..+.+.|
T Consensus 42 ~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~--~A~gaLrnL~~~~g~d~~~~l~~~~ 119 (684)
T 4gmo_A 42 DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRA--AGWEILKVLAQEEEADFCVHLYRLD 119 (684)
T ss_dssp HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHH--HHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHH--HHHHHHHHHHhhcCchHHHHHHHcC
Confidence 4677777777789999999999999999999999998876 55653 334554 888888888865 57888888899
Q ss_pred CHHHHHHHhhhh
Q psy4828 259 VIPTLADILSDS 270 (448)
Q Consensus 259 iI~~L~~ilk~~ 270 (448)
++|+|...++..
T Consensus 120 il~~L~~~l~~~ 131 (684)
T 4gmo_A 120 VLTAIEHAAKAV 131 (684)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998764
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=91.51 E-value=0.2 Score=41.94 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHH
Q psy4828 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQK 442 (448)
Q Consensus 375 lk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 442 (448)
+..|++.|+ +.|+.+-.-|+.-+|.+-. | ++-..+.+++.++|+.||+.|..|+.+
T Consensus 44 ~~~L~~~L~-d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 44 FEPLLESLS-NEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHHHHGGG-CSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 477888884 6788888888888887632 1 123344445555555555555555544
No 69
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=90.45 E-value=0.43 Score=42.35 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=55.0
Q ss_pred hHHHhchhh-hh-hhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHH
Q psy4828 358 QFWRENAPR-LH-EKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYE 435 (448)
Q Consensus 358 ~FW~EN~~k-f~-e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~e 435 (448)
...+..+-+ +. -.+-+.+..|++.| .+.|+.+-.-|+.-+|.+-. | .+...+.+++.++|+.||..
T Consensus 59 ~~vr~~a~~~L~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~ 126 (201)
T 3ltj_A 59 AWVRRAAADALGQIGDERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIA 126 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHcCCCHHHHHH
Confidence 345555554 32 23457888999998 46788888888888887633 2 35677888999999999999
Q ss_pred HHHHHHHH
Q psy4828 436 ALLAVQKL 443 (448)
Q Consensus 436 AL~avQkl 443 (448)
|+.++.++
T Consensus 127 a~~aL~~~ 134 (201)
T 3ltj_A 127 AAFALGEI 134 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998775
No 70
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.18 E-value=7.7 Score=38.84 Aligned_cols=232 Identities=9% Similarity=0.089 Sum_probs=92.8
Q ss_pred hHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHH-HHHHHHHHhhccchhhHHHH
Q psy4828 135 CSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQ-SVARCLQMMLRIDEYRIAFI 213 (448)
Q Consensus 135 ~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~-~~~~~l~~lL~~~~~R~~f~ 213 (448)
-..|.+=+++++++|+-.|.+.|..+.. .+-++.+...+...+.. .+.|+. .|+-|...++.... ...
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~-------~~m~~~l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~~p--e~v- 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITD-------STMLQAIERYMKQAIVD-KVPSVSSSALVSSLHLLKCSF--DVV- 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCC-------TTTHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTTCH--HHH-
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhccCH--HHH-
Confidence 3446777788899999999999999862 33466777778887765 456665 45566666654432 111
Q ss_pred hhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChh-HHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHH
Q psy4828 214 NVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPK-LADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIA 292 (448)
Q Consensus 214 ~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~ 292 (448)
+ +.+..+-+++.+ .+...+|+++.++..+.-+.. ....+ +.-+.. ..... .
T Consensus 175 ~-~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d~~a~~kL---------v~~l~~---------~~l~~--------~ 226 (355)
T 3tjz_B 175 K-RWVNEAQEAASS-DNIMVQYHALGLLYHVRKNDRLAVSKM---------ISKFTR---------HGLKS--------P 226 (355)
T ss_dssp H-TTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTCHHHHHHH---------HHHHHS---------SCCSC--------H
T ss_pred H-HHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhchHHHHHH---------HHHHhc---------CCCcC--------h
Confidence 1 345555566643 345556899999988875332 22211 111110 00000 1
Q ss_pred HHhcchHHHHHHHhcCCCCC-hHHHHHH-HHHH--------HHHHHHhhhcchHHHHHHHHhhCCcccCCCCCChhHHHh
Q psy4828 293 MVQSKVLKQLSILEQRKFDD-EDIVEDV-QFLN--------EKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRE 362 (448)
Q Consensus 293 mv~~~~l~~l~~L~~rk~~D-edl~edl-~~L~--------e~L~~~~~~lTsfDeY~~El~SG~L~WSP~H~se~FW~E 362 (448)
+.++.+++++..+..+ | ++..+++ +.|. ..+=+.++.+.++..+-..+..
T Consensus 227 ~~q~~llr~l~~~~~~---d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~----------------- 286 (355)
T 3tjz_B 227 FAYCMMIRVASRQLED---EDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELA----------------- 286 (355)
T ss_dssp HHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC---------------------------
T ss_pred HHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHH-----------------
Confidence 1112222222111110 1 1111111 1110 1111222333333322222111
Q ss_pred chhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHH
Q psy4828 363 NAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQ 441 (448)
Q Consensus 363 N~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 441 (448)
..+..|..+| +|.||.+.=||+.=|..++..||+.-.. ....|.+|++++|..++--|+.++=
T Consensus 287 ----------~a~~~L~~fL-ss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 287 ----------PAVSVLQLFC-SSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp -----------CCCTHHHHH-HSSSSSSHHHHHHCC-------------------------------------------
T ss_pred ----------HHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHHHhh
Confidence 2234455566 5889999999999999999999976543 3467899999999999999987653
No 71
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=90.03 E-value=4.1 Score=44.03 Aligned_cols=164 Identities=16% Similarity=0.050 Sum_probs=106.4
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHH-HhhhcCCchhHHHHHHHHHHHHHhcc
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQF-LNLLNGSDGFIINMTAKIIAKIACWS 164 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~f-l~lL~~~d~~I~~~a~~iLt~l~~~~ 164 (448)
+.++++.|++ ++++....++..|..|+++ ++...++... +...+. -++|..++.-|+..|+-.|..|...+
T Consensus 36 i~Pll~~L~S-~~~~~r~~A~~al~~l~~~-~~~~~l~~~~------~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 36 ILPVLKDLKS-PDAKSRTTAAGAIANIVQD-AKCRKLLLRE------QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp THHHHHHHSS-SCCSHHHHHHHHHHHHTTS-HHHHHHHHHT------THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHHHHcC-cHHHHHHHHc------CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 5567788877 7888999999999999975 5444445553 556665 45678788999999999999997654
Q ss_pred cCCC-----ChhhHHHHHHHHHH---HhhhcC------C--------hhHHHHHHHHHHhhc-cchhhHHHHhhcchhhH
Q psy4828 165 VDLL-----NPSDLNFYLTWLKD---QLKLAN------N--------DYMQSVARCLQMMLR-IDEYRIAFINVDGIRTL 221 (448)
Q Consensus 165 ~~~~-----~~~~l~~~l~~l~~---~L~~~~------~--------~~~~~~~~~l~~lL~-~~~~R~~f~~~~gv~~L 221 (448)
.... ..+.+..+...+.. .++... . ++...++.+|..|.. ..+....+.+.++++.|
T Consensus 108 g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l 187 (684)
T 4gmo_A 108 EADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL 187 (684)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred CchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence 2111 12345555555543 221110 0 111224455555443 34455567777888888
Q ss_pred HHhhc--cCcchHHHHHHHHHHHHhhcCh-hHHHhhhcC
Q psy4828 222 LSVLS--GRVNFQIQYQLIFCLWVLTFNP-KLADRMNKF 257 (448)
Q Consensus 222 ~~lL~--~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~l~~~ 257 (448)
+..|. +..+..+.-.++-|+..+|=+. +..+.+...
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~ 226 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD 226 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence 87773 4456777789999999998764 566666443
No 72
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.90 E-value=0.51 Score=42.20 Aligned_cols=74 Identities=23% Similarity=0.258 Sum_probs=54.5
Q ss_pred hHHHhchhh-hh-hhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHH
Q psy4828 358 QFWRENAPR-LH-EKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYE 435 (448)
Q Consensus 358 ~FW~EN~~k-f~-e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~e 435 (448)
...+..+-+ +. -.+-+.+..|++.| .+.|+.+-.-|+.-+|.+-. | ++-..+++++.++|++||..
T Consensus 64 ~~vr~~a~~aL~~~~~~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~ 131 (211)
T 3ltm_A 64 AWVRRAAADALGQIGDERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDEDWFVRIA 131 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHH
Confidence 445555554 22 23457888888888 57788888888888887632 1 35678889999999999999
Q ss_pred HHHHHHHH
Q psy4828 436 ALLAVQKL 443 (448)
Q Consensus 436 AL~avQkl 443 (448)
|+.++.++
T Consensus 132 a~~aL~~~ 139 (211)
T 3ltm_A 132 AAFALGEI 139 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99998776
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=89.35 E-value=1.2 Score=42.58 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=67.5
Q ss_pred hHHH-hchhhhhhhhHHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcc--hhHHHHHhCcHHHHHhhhcCCChhHHH
Q psy4828 358 QFWR-ENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR--GKHVIEQLGGKQLVMQLLSHEDPNVRY 434 (448)
Q Consensus 358 ~FW~-EN~~kf~e~~~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~--gr~il~~lg~K~~vM~Lm~h~d~eVr~ 434 (448)
++|+ --|...-+.+-+.+-.|.++| +..|+.+..-|..-|++..+..|. .+.++++ .-++|.+++.++|+.|.-
T Consensus 17 ~sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval 93 (265)
T 3b2a_A 17 LSWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTI 93 (265)
T ss_dssp HTTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHH
T ss_pred HHhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHH
Confidence 3454 223334445556888999999 689999999999999999998764 4444444 568999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy4828 435 EALLAVQKLMVH 446 (448)
Q Consensus 435 eAL~avQklm~~ 446 (448)
.|+.|+-.|+.+
T Consensus 94 ~A~r~L~~LLe~ 105 (265)
T 3b2a_A 94 KALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 999999888754
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.33 E-value=0.28 Score=41.11 Aligned_cols=59 Identities=17% Similarity=0.101 Sum_probs=47.1
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
+.+..|++.| .+.|+.|-.-|+.-+|.+-. | .+...+.++++++|+.||..|..|+.+|
T Consensus 73 ~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 5688889999 47889999999999998742 1 2346788889999999999999997653
No 75
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.00 E-value=0.82 Score=42.73 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=40.8
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
-+.+..|+++| .+.|+.+-.-|+.-||.+-.. +. .+...+.+++.++|++||.+|+.++.++
T Consensus 158 ~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~---~~------~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 158 KATIPLLINLL-KDPNGDVRNWAAFAININKYD---NS------DIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp -CCHHHHHHHH-TCSSHHHHHHHHHHHHHHTCC---CH------HHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhhccC---cH------HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 35666777777 456667777777777765211 11 1335677788888888888888887765
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.63 E-value=1.1 Score=42.15 Aligned_cols=72 Identities=11% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCc-ch-h-HHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCP-RG-K-HVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p-~g-r-~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.++++.|.+.|.+..|+.+...||+-||++++... .+ . ..... .-..|++.+.+..+.||..|-.|+..++.
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~ 133 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICK 133 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 58899999999556788899999999999998653 11 1 22222 23578888899999999999999888875
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=87.42 E-value=2 Score=40.41 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=57.8
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcch-hHHHHHh--CcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG-KHVIEQL--GGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~g-r~il~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.++..|...| ++.++.+-.-++.=|+.+++..+.. ..+...+ ..-..++++|++.+++||-.|..|+-.++.
T Consensus 146 ~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 146 DMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6778888889 4668999999999999999987764 3333344 345689999999999999999999888763
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=82.76 E-value=40 Score=33.49 Aligned_cols=211 Identities=13% Similarity=0.121 Sum_probs=124.3
Q ss_pred HHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHH
Q psy4828 77 MLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKI 156 (448)
Q Consensus 77 ~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~i 156 (448)
++...+..-+..++.-|.+ ++.+..+-+|--+..++++|+.++.-|... +.-.-+++.....++-++.-+++-
T Consensus 111 iLrtsps~ra~~iiekL~~-~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~------~GL~~Li~vi~~~~gN~q~Y~L~A 183 (339)
T 3dad_A 111 ILRTQLSVRVNAILEKLYS-SSGPELRRSLFSLKQIFQEDKDLVPEFVHS------EGLSCLIRVGAAADHNYQSYILRA 183 (339)
T ss_dssp EEEECHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTCTTHHHHHHHT------THHHHHHHHHTTSCHHHHHHHHHH
T ss_pred EEecCcHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhhcchHHHHHHHHh------ccHHHHHHHHHhcChHHHHHHHHH
Confidence 3333444566777777776 566678888889999999999999999986 667889999988899999999999
Q ss_pred HHHHHhcccCCCChhh-HHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc-chhhHHHHhh-------cc---hhhHHHh
Q psy4828 157 IAKIACWSVDLLNPSD-LNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI-DEYRIAFINV-------DG---IRTLLSV 224 (448)
Q Consensus 157 Lt~l~~~~~~~~~~~~-l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~-~~~R~~f~~~-------~g---v~~L~~l 224 (448)
+..|+.+-.. +++-. =..|+.||...+.+.....++.++..|-.+... +..-..+.+. .| ...|+.+
T Consensus 184 L~~LM~~v~G-m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~ 262 (339)
T 3dad_A 184 LGQLMLFVDG-MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSI 262 (339)
T ss_dssp HHHHTTSHHH-HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHhcccc-ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHH
Confidence 9999876110 10000 156888888777542223333333333332222 2222232221 12 4456666
Q ss_pred hc--cCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHH
Q psy4828 225 LS--GRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQL 302 (448)
Q Consensus 225 L~--~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l 302 (448)
|. +..+.++|=+++-.+= -++.+.++.....+.+..+=..|+-+.+
T Consensus 263 L~~~~~~D~elq~~amtLIN--------------------------------~lL~~apd~d~~~di~d~Le~~gi~~~i 310 (339)
T 3dad_A 263 LEEKNGADPELLVYTVTLIN--------------------------------KTLAALPDQDSFYDVTDALEQQGMEALV 310 (339)
T ss_dssp HTTTTSCCHHHHHHHHHHHH--------------------------------HHHHHCSSHHHHHHHHHHHHHTTHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHH--------------------------------HHHhcCCChhHHHHHHHHHHHccHHHHH
Confidence 64 2334444323221110 0122222222112233334446777888
Q ss_pred HHHhcCCCCChHHHHHHHHHHHHHH
Q psy4828 303 SILEQRKFDDEDIVEDVQFLNEKLQ 327 (448)
Q Consensus 303 ~~L~~rk~~Dedl~edl~~L~e~L~ 327 (448)
..+.+++=+|+|+.+=+.--...|.
T Consensus 311 ~r~l~~~~~~~~l~~Ql~iyE~~~~ 335 (339)
T 3dad_A 311 QRHLGTAGTDVDLRTQLVLYENALK 335 (339)
T ss_dssp HHHHSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhh
Confidence 8888888889999988876666554
No 79
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=80.83 E-value=3.3 Score=39.97 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcH---HHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGK---QLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K---~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
.++..|.+-+ +|.++.+-+=.|+-++.++..|.-. ..++- ..|+++++.+|++||-.|+.|+-.+.
T Consensus 167 ~v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 167 KMTPMLLDAL-KSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5667777777 6888999999999999999876544 12244 67999999999999999999986543
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.64 E-value=3.8 Score=38.61 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=49.1
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcch----hHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG----KHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~g----r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
.++..+...+ ++.+|.+.+=++.=|+..++.|... +..+.. ....+..+++|.|++||-.|..++-.++-
T Consensus 139 ~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~--i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 139 QSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE--LLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH--HGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHH--HHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4555566666 5789999999999999888865321 112211 12346678899999999999999877763
No 81
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=77.40 E-value=25 Score=35.02 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=84.3
Q ss_pred CHHhHHHHHHhhcCChHHHHHHHhhchhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchh
Q psy4828 56 SKEDYDFITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVC 135 (448)
Q Consensus 56 s~~d~~~ik~~d~~~~~~r~~~~~~~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~ 135 (448)
+.+-.+.+|.+=..-+.--.+++..+-+....-+-+||.+ ++--|.+-+|-|++++|.+-+ -..+..++- ....-.
T Consensus 181 asDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S-~NYVTkRQSlKLLgelLldr~-N~~vM~~Yi--s~~~nL 256 (341)
T 1upk_A 181 ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-ENYVTKRQSLKLLGELLLDRH-NFTIMTKYI--SKPENL 256 (341)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHSGG-GHHHHHHHT--TCHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC-CcchhHHHHHHHHHHHHhCch-HHHHHHHHh--CCHHHH
Confidence 4455556666655444545578888877777777888877 788889999999999998743 333344431 133456
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-----HHHHHHHHHHh
Q psy4828 136 SQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-----NFYLTWLKDQL 184 (448)
Q Consensus 136 ~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-----~~~l~~l~~~L 184 (448)
...+.+|..+..-|+.-|+++.-.+.+..+++.+-.++ ++++.+|.+-.
T Consensus 257 kl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~ 310 (341)
T 1upk_A 257 KLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQ 310 (341)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCC
Confidence 77899999999999999999999887643321111111 56666666543
No 82
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=69.35 E-value=89 Score=31.02 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=83.6
Q ss_pred HhhhcCChhHHHHHHHHHHhh-ccchhhHHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHH
Q psy4828 183 QLKLANNDYMQSVARCLQMML-RIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIP 261 (448)
Q Consensus 183 ~L~~~~~~~~~~~~~~l~~lL-~~~~~R~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~ 261 (448)
.|.+++......++..|+.++ ..+.+-..|.+.+|+..|+.++....|--+-|-.--..=+|.|......-+.+..+|.
T Consensus 126 kL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~ 205 (339)
T 3dad_A 126 KLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ 205 (339)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence 333333444556777777744 6799999999999999999988654433333444334444454222211122334455
Q ss_pred HHHHHhhh--------hhhhh-hcccCCCchhH-HHHHHHH-HHhcc---hHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q psy4828 262 TLADILSD--------SVKEK-NLIEKPTEPAL-AKENCIA-MVQSK---VLKQLSILEQRKFDDEDIVEDVQFLNEKLQ 327 (448)
Q Consensus 262 ~L~~ilk~--------~~KEK-NLl~~~~~~~~-~~~~~~~-mv~~~---~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 327 (448)
-++.++.. +.+== +++...++... ..+-+.. -...| ...++..|+++.=+|.|+.--.-.|.+.+=
T Consensus 206 ~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL 285 (339)
T 3dad_A 206 WLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTL 285 (339)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 55555542 11100 44444432110 0000000 00112 556778888666679998877777766554
Q ss_pred HHhhhcchHHHHHHHHhh
Q psy4828 328 ASVQDLSSFDEYKTEVKS 345 (448)
Q Consensus 328 ~~~~~lTsfDeY~~El~S 345 (448)
...-.--+|.+-..++.+
T Consensus 286 ~~apd~d~~~di~d~Le~ 303 (339)
T 3dad_A 286 AALPDQDSFYDVTDALEQ 303 (339)
T ss_dssp HHCSSHHHHHHHHHHHHH
T ss_pred hcCCChhHHHHHHHHHHH
Confidence 443222224444444444
No 83
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=59.85 E-value=13 Score=29.44 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=38.5
Q ss_pred chhHHhhCCCCHHhHHHHHHhhcCChHHHH----HHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 46 WNTYQQSQMISKEDYDFITVFDTASSAKRA----EMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 46 W~~~~ra~~is~~d~~~ik~~d~~~~~~r~----~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
++.+...|.+|+++.+.|+.- .. ...|. .++...|+.....|+..|.....++.
T Consensus 28 ld~L~~~~vlt~~~~e~I~~~-~t-~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~L 85 (94)
T 2p1h_A 28 MDHMISDGFLTISEEEKVRNE-PT-QQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDL 85 (94)
T ss_dssp HHHHHHHTSSCHHHHHHHHTS-SS-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCCCHHHHHHHHcC-CC-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHH
Confidence 567778899999999999985 22 22222 46666777888888888877544343
No 84
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=59.40 E-value=3.4 Score=35.33 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.8
Q ss_pred hHHHHHHhhHhhHhhhCcchhHHHHHh----C-cHHHHHhhhcCCChhHHHHHH
Q psy4828 389 LVLSVASYDIGEYVRHCPRGKHVIEQL----G-GKQLVMQLLSHEDPNVRYEAL 437 (448)
Q Consensus 389 ~vlaVAc~DIge~vr~~p~gr~il~~l----g-~K~~vM~Lm~h~d~eVr~eAL 437 (448)
+.-|+--.|.+.|-|+|-.=..+...+ | +..-++.|++|+|+.||..|-
T Consensus 25 q~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA 78 (123)
T 2i9c_A 25 QDDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAA 78 (123)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHH
Confidence 455777788888888876544444432 4 455799999999999998774
No 85
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=57.28 E-value=1.6e+02 Score=29.29 Aligned_cols=157 Identities=15% Similarity=0.232 Sum_probs=87.0
Q ss_pred hHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCC---ChhhHHHHHHHHHHHhhhcCChhHH--HHHHHHHHhhccchhh
Q psy4828 135 CSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLL---NPSDLNFYLTWLKDQLKLANNDYMQ--SVARCLQMMLRIDEYR 209 (448)
Q Consensus 135 ~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~---~~~~l~~~l~~l~~~L~~~~~~~~~--~~~~~l~~lL~~~~~R 209 (448)
+..|+.....+.=-|.--|+.++.-|+...+... =......|+......|.+ ++|+- -.++.|.++|-.+.+.
T Consensus 166 f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S--~NYVTkRQSlKLLgelLldr~N~ 243 (341)
T 1upk_A 166 FYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS--ENYVTKRQSLKLLGELLLDRHNF 243 (341)
T ss_dssp GGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhCchHH
Confidence 3456666665543455556666666654332100 012235677777766654 57763 2578888888777765
Q ss_pred HHHHh----hcchhhHHHhhccCcchHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhH
Q psy4828 210 IAFIN----VDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPAL 285 (448)
Q Consensus 210 ~~f~~----~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~ 285 (448)
.+..+ .+..+.++.+|++.. -.+||++.-++=+.--||.= =|.+.+||.. |
T Consensus 244 ~vM~~Yis~~~nLkl~M~LL~d~s-k~Iq~EAFhVFKvFVANP~K---------~~~I~~IL~~---------N------ 298 (341)
T 1upk_A 244 TIMTKYISKPENLKLMMNLLRDKS-RNIQFEAFHVFKVFVANPNK---------TQPILDILLK---------N------ 298 (341)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHCSSC---------CHHHHHHHHH---------T------
T ss_pred HHHHHHhCCHHHHHHHHHHhcCch-hchhhhhhhheeeeeeCCCC---------ChHHHHHHHH---------H------
Confidence 54433 235777888887542 33455777665543333211 1233333211 1
Q ss_pred HHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Q psy4828 286 AKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQ 327 (448)
Q Consensus 286 ~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~ 327 (448)
..++++.+..+...+-.|+...++=++|...++
T Consensus 299 ---------r~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~ 331 (341)
T 1upk_A 299 ---------QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIR 331 (341)
T ss_dssp ---------HHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHH
Confidence 024667777777766668888888777766654
No 86
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=56.52 E-value=23 Score=28.38 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=42.6
Q ss_pred CCchhHHhhCCCCHHhHHHHHHhhcCChHHHH----HHHhhchhHHHHHHHHHhcccChhhH
Q psy4828 44 PNWNTYQQSQMISKEDYDFITVFDTASSAKRA----EMLNERRGHAAKTFLNLLEHISKDST 101 (448)
Q Consensus 44 i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~----~~~~~~~~~~~~~~l~lL~~~~~~d~ 101 (448)
.=|+.+...|++|+++.+.|+.-.+.....|. .++...|+.....|+..|..+..++.
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 35888899999999999999995332222222 46777888888999999987555554
No 87
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=51.46 E-value=10 Score=33.09 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=35.3
Q ss_pred chhHHhhCCCCHHhHHHHHHhhcCChHHHH--HHHhhchhHHHHHHHHHhccc
Q psy4828 46 WNTYQQSQMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLNLLEHI 96 (448)
Q Consensus 46 W~~~~ra~~is~~d~~~ik~~d~~~~~~r~--~~~~~~~~~~~~~~l~lL~~~ 96 (448)
=|.+...|.||.+|++.+....-.....|. .++...|+.+++.|+..|..+
T Consensus 47 LD~LL~~gvLs~EE~EiV~~~~T~~dKaRrLLDlV~sKGe~a~e~Ll~~Lqql 99 (144)
T 4e9m_A 47 VDNLLKNDYFSAEDAEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQL 99 (144)
T ss_dssp HHHHHHTTSSCHHHHHHHHTSSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHhccCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 456778899999999999773322222332 467777778888888877763
No 88
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=47.12 E-value=39 Score=28.91 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhh-HHHHHHHHH
Q psy4828 103 QYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSD-LNFYLTWLK 181 (448)
Q Consensus 103 qyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~-l~~~l~~l~ 181 (448)
.+++. |+|++...+.-.. +....+-+-|++.++.++..|+.+|-.++.....++..+. -..|++-+.
T Consensus 24 ~~ile-icD~I~~~~~~~k-----------~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 24 GLILD-ICDKVGQSRTGPK-----------DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp HHHHH-HHHHHTTSTTHHH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred HHHHH-HHHHHHCCCcCHH-----------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 34444 7788877664333 2233456667888999999999999999875543332111 144555554
Q ss_pred HHh
Q psy4828 182 DQL 184 (448)
Q Consensus 182 ~~L 184 (448)
..+
T Consensus 92 ~l~ 94 (140)
T 3ldz_A 92 NVL 94 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 89
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=46.89 E-value=4.7 Score=32.18 Aligned_cols=33 Identities=15% Similarity=0.430 Sum_probs=26.2
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHhhhcC
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQLLSH 427 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~Lm~h 427 (448)
.+|+..|+..||.|..++....||+ ..++-..|
T Consensus 30 VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~ 64 (88)
T 3lf5_A 30 VYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHR 64 (88)
T ss_dssp EEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHT
T ss_pred EEECccchhhCcChhhhhhhcCCCcchHHHHHHCC
Confidence 4899999999999999999888875 55554433
No 90
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=46.45 E-value=1.5e+02 Score=29.79 Aligned_cols=77 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHhhccCCChhHHHHHHhhH-------hhHhhhCcch----hHHHHHhC-cHHHHHhhhcCCChhHHHH
Q psy4828 368 HEKNYELLKSLIHLLETSRDPLVLSVASYDI-------GEYVRHCPRG----KHVIEQLG-GKQLVMQLLSHEDPNVRYE 435 (448)
Q Consensus 368 ~e~~~~llk~L~~lL~~S~D~~vlaVAc~DI-------ge~vr~~p~g----r~il~~lg-~K~~vM~Lm~h~d~eVr~e 435 (448)
.+.--.++-.|..+|+ ..|+.|+=-+..-. -+++...|.. ....+.+. .|..|..+..++|.-||-.
T Consensus 95 ~el~~~~l~~L~~LL~-d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~ 173 (386)
T 3o2t_A 95 IELLLKLIANLNMLLR-DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTH 173 (386)
T ss_dssp GGGHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHH
Confidence 3344667777888884 56775442211111 1445555543 35566544 6999999999999999999
Q ss_pred HHHHHHHHhc
Q psy4828 436 ALLAVQKLMV 445 (448)
Q Consensus 436 AL~avQklm~ 445 (448)
|++-+|.++.
T Consensus 174 aiKFle~VIl 183 (386)
T 3o2t_A 174 AIKFVEGLIV 183 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999873
No 91
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=46.22 E-value=60 Score=33.77 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=60.3
Q ss_pred chhHHHHHHHHHhccc---------ChhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHH
Q psy4828 81 RRGHAAKTFLNLLEHI---------SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIIN 151 (448)
Q Consensus 81 ~~~~~~~~~l~lL~~~---------~~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~ 151 (448)
+.-+..+.++++|.+. .++.++.-++.=|.++++..|..-.+..+++ .=...+.+++++|+-|+.
T Consensus 392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg------~K~~VM~Lm~h~d~~Vr~ 465 (480)
T 1ho8_A 392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTG------GKADIMELLNHSDSRVKY 465 (480)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHS------HHHHHHHHTSCSSHHHHH
T ss_pred cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcC------cHHHHHHHhcCCCHHHHH
Confidence 3346788899999752 3466677777788999999997777777763 344579999999999999
Q ss_pred HHHHHHHHHHhc
Q psy4828 152 MTAKIIAKIACW 163 (448)
Q Consensus 152 ~a~~iLt~l~~~ 163 (448)
.|+..+.+++.+
T Consensus 466 ~AL~avQklm~~ 477 (480)
T 1ho8_A 466 EALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
No 92
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=45.18 E-value=4.9 Score=33.14 Aligned_cols=34 Identities=21% Similarity=0.510 Sum_probs=27.9
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHhhhcCC
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQLLSHE 428 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~Lm~h~ 428 (448)
.+|+..|+..||.|..++....||+ ..|.-..|+
T Consensus 33 VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs 68 (104)
T 1hko_A 33 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68 (104)
T ss_dssp EEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCC
T ss_pred EEECCcchhhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 6899999999999999999888884 556544565
No 93
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=44.39 E-value=4.8 Score=31.92 Aligned_cols=34 Identities=24% Similarity=0.514 Sum_probs=27.6
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHhhhcCC
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQLLSHE 428 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~Lm~h~ 428 (448)
.+|+..|+..||.|..++....||+ ..+.-..|+
T Consensus 31 VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 66 (88)
T 2ibj_A 31 VYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66 (88)
T ss_dssp EEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCC
T ss_pred EEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCC
Confidence 6899999999999999998888874 556544565
No 94
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=43.83 E-value=5.2 Score=32.18 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=27.9
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHhhhcCCC
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQLLSHED 429 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~Lm~h~d 429 (448)
.+|+..|+..||.|..++....||+ ..++-..|+.
T Consensus 34 VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~ 70 (92)
T 3ner_A 34 VYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSS 70 (92)
T ss_dssp EEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCH
T ss_pred EEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCH
Confidence 4899999999999999999888874 5555445653
No 95
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=43.47 E-value=33 Score=27.85 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=38.0
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCChHHHH---HHHhhchhHHHHHHHHHhccc
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTASSAKRA---EMLNERRGHAAKTFLNLLEHI 96 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~---~~~~~~~~~~~~~~l~lL~~~ 96 (448)
=||.+...|.|++++ .-|+.-...+..+-. ..+...|+..+..|++.|..+
T Consensus 32 lLD~LL~~~VL~~ee-~~I~~~~~T~~~kaR~Lld~v~~KG~~A~~~F~~~L~e~ 85 (98)
T 2nz7_A 32 LVDNLLKNDYFSAED-AEIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLLQQL 85 (98)
T ss_dssp HHHHHHHTTSSCHHH-HHHHHTCCSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHH-HHHHccCCCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 478888999999999 888875444433222 466667888999999888764
No 96
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=43.07 E-value=5 Score=32.28 Aligned_cols=34 Identities=21% Similarity=0.510 Sum_probs=27.7
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHhhhcCC
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQLLSHE 428 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~Lm~h~ 428 (448)
.+|+..|+..||.|..++....||+ ..+.-..|+
T Consensus 29 VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 64 (93)
T 1cyo_A 29 VYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64 (93)
T ss_dssp EEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCC
T ss_pred EEECCCcchhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 5899999999999999998888884 556544565
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=39.91 E-value=3.3e+02 Score=30.80 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=65.8
Q ss_pred CCchhHHHHhhhcC-CchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhh
Q psy4828 131 REPVCSQFLNLLNG-SDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR 209 (448)
Q Consensus 131 ~~~~~~~fl~lL~~-~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R 209 (448)
.+.....++..|.. ++++++..|...++. .+.|.. +...++.++..+.+- .++...+.++-+|..++-.++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~algl-AyaGTG--n~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~-- 610 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIAL-AYAGTG--NNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDY-- 610 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHH-HTTTSC--CHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSC--
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhcCCC--CHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCH--
Confidence 44667778888764 688888888877774 444432 566677777666532 223344567788876543332
Q ss_pred HHHHhhcchhhHHHhhccCcchHHHHHHHHHHHHhh
Q psy4828 210 IAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLT 245 (448)
Q Consensus 210 ~~f~~~~gv~~L~~lL~~~~~~Ql~Y~~ll~lWlLS 245 (448)
+-++.+++.|....+..+-|.+.+++=+++
T Consensus 611 ------e~v~rlv~~L~~~~d~~VR~gAalALGli~ 640 (963)
T 4ady_A 611 ------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC 640 (963)
T ss_dssp ------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 345667777766567888889888887775
No 98
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=39.24 E-value=3e+02 Score=27.30 Aligned_cols=147 Identities=18% Similarity=0.291 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhc-chhhHHHhhcc-CcchHH-HHHHH--HHHHHh--hcChhHHHhhh------cCC
Q psy4828 192 MQSVARCLQMMLRIDEYRIAFINVD-GIRTLLSVLSG-RVNFQI-QYQLI--FCLWVL--TFNPKLADRMN------KFN 258 (448)
Q Consensus 192 ~~~~~~~l~~lL~~~~~R~~f~~~~-gv~~L~~lL~~-~~~~Ql-~Y~~l--l~lWlL--SF~~~~~~~l~------~~~ 258 (448)
...+++||..++..+.-...+.+++ ++..|...|.. ...+-. --+.+ +|+|-= .....+.+.|. +..
T Consensus 75 ~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~ 154 (386)
T 2bnx_A 75 QHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVE 154 (386)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchh
Confidence 3458899999998887777666665 45566665532 222111 11222 232210 00111222221 111
Q ss_pred CHHHHHHHhhhh-hhhh---------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q psy4828 259 VIPTLADILSDS-VKEK---------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQA 328 (448)
Q Consensus 259 iI~~L~~ilk~~-~KEK---------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~ 328 (448)
-...+++-++.. ..|= .++..+++-..+-+--.++..+|+.++++.|.. ..+++|..-++.-.+.-++
T Consensus 155 RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~--~~~~~L~~Qi~~fe~~~~e 232 (386)
T 2bnx_A 155 RFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELRE--IENEDMKVQLCVFDEQGDE 232 (386)
T ss_dssp TTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTT--CCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhc--cCChhHHHHHHHHHHHHHH
Confidence 222344444321 1111 445555555555455557888999999999864 5588888777776666555
Q ss_pred Hhhhcc-hHHHHH
Q psy4828 329 SVQDLS-SFDEYK 340 (448)
Q Consensus 329 ~~~~lT-sfDeY~ 340 (448)
...++. .||...
T Consensus 233 D~~el~~r~~~i~ 245 (386)
T 2bnx_A 233 DFFDLKGRLDDIR 245 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCC
Confidence 555432 344443
No 99
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=38.81 E-value=3e+02 Score=27.25 Aligned_cols=181 Identities=12% Similarity=0.135 Sum_probs=95.7
Q ss_pred hchhHHHHHHHHHhcccC----------hhhHHHHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhH
Q psy4828 80 ERRGHAAKTFLNLLEHIS----------KDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFI 149 (448)
Q Consensus 80 ~~~~~~~~~~l~lL~~~~----------~~d~vqyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I 149 (448)
.+| ...++++|.++. +.+..-+++.++--++.....+-. +.. ++.....+...|.++.+.+
T Consensus 108 ~~G---l~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~-vl~-----~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 108 AEG---LASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKT-MLE-----TEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHH---HHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHH-HHT-----CSSHHHHHHHTCCTTSHHH
T ss_pred Hcc---HHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHH-HHc-----ChHHHHHHHHHhCCCchHH
Confidence 555 556666665431 123444556666666644333333 434 3355667778888888888
Q ss_pred HHHHHHHHHHHHhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCc
Q psy4828 150 INMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV 229 (448)
Q Consensus 150 ~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~ 229 (448)
...|+.+|+.+..+..+ ..+.+..++.+.. ++ . .-+..-...+++.|.+..
T Consensus 179 ~~~aleLL~~lc~~~~~---~gG~~~VL~Al~~----------------~~---------~-~~e~~RF~~lv~~L~~~~ 229 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQP---EDMNERVLEAMTE----------------RA---------E-MDEVERFQPLLDGLKSGT 229 (383)
T ss_dssp HHHHHHHHHHHHTCCSS---TTHHHHHHHHHHH----------------HH---------H-HHTSCTTHHHHHTTSTTS
T ss_pred HHHHHHHHHHHHhCcCc---CCcHHHHHHHHHH----------------HH---------H-hCCCCcHHHHHHHHHccC
Confidence 88999999877654420 1113333222221 11 1 011122344555554432
Q ss_pred chHHHHHHHHHHHHhhcChhHHHhhhcCCCHHHHHHHhhhhhhhhhcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCC
Q psy4828 230 NFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRK 309 (448)
Q Consensus 230 ~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~iI~~L~~ilk~~~KEKNLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk 309 (448)
..+ ++++.|+|-.. ++..+++-+.+-+--.++..+|+.++++.|..
T Consensus 230 ~~e------~~~~~m~lIN~--------------------------li~~~~dl~~R~~lR~ef~~~Gl~~il~~lr~-- 275 (383)
T 3eg5_B 230 SIA------LKVGCLQLINA--------------------------LITPAEELDFRVHIRSELMRLGLHQVLQELRE-- 275 (383)
T ss_dssp CHH------HHHHHHHHHHH--------------------------HHTTCCCHHHHHHHHHHHHHTTHHHHHHHHTT--
T ss_pred cHH------HHHHHHHHHHH--------------------------HHcCCCCHHHHHHHHHHHHHCChHHHHHHHhc--
Confidence 222 23445555322 22223332323333346888999999999865
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh
Q psy4828 310 FDDEDIVEDVQFLNEKLQASVQD 332 (448)
Q Consensus 310 ~~Dedl~edl~~L~e~L~~~~~~ 332 (448)
..+++|..-++.-.+.-++...+
T Consensus 276 ~~~~~L~~Qi~~fe~~~~eD~~e 298 (383)
T 3eg5_B 276 IENEDMKVQLCVFDEQGDEDFFD 298 (383)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHhHHH
Confidence 45888887777666655444443
No 100
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=38.40 E-value=1.3e+02 Score=29.73 Aligned_cols=114 Identities=8% Similarity=-0.033 Sum_probs=66.6
Q ss_pred HHHHHHHhcccChhhHHHHHHHHHHHHHhhch-hHHHHHHHhhhcCCC----chhHHHHhhhcCCchhHHHHHHHHHHHH
Q psy4828 86 AKTFLNLLEHISKDSTIQYILVLIDDILQEDR-SRVEIFKEYSQTKRE----PVCSQFLNLLNGSDGFIINMTAKIIAKI 160 (448)
Q Consensus 86 ~~~~l~lL~~~~~~d~vqyvL~li~dll~~~~-~~~~~f~~~~~~~~~----~~~~~fl~lL~~~d~~I~~~a~~iLt~l 160 (448)
+.+++..+.+. +++++--+=.+..|+-..+| -|.-.+.-++....+ ...+++-..|.+.++||.-.|+-....|
T Consensus 88 vYLyl~~~~~~-~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL 166 (355)
T 3tjz_B 88 CYLTIKEMSCI-AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHL 166 (355)
T ss_dssp HHHHHHHHTTT-SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 44455555554 34454333335556655544 333333333333222 3345566777888999999999999998
Q ss_pred HhcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhcc
Q psy4828 161 ACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI 205 (448)
Q Consensus 161 ~~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~~ 205 (448)
+... .+.++.|++-+.+.+...++-.+..++.++..+-+.
T Consensus 167 ~~~~-----pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 167 LKCS-----FDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp TTTC-----HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred hccC-----HHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh
Confidence 8544 355678888888887653333333456666665443
No 101
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=37.56 E-value=4.5 Score=32.32 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.0
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHh
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQ 423 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~ 423 (448)
.+|+..|+..||.|..++....||+ ..+.
T Consensus 32 VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~ 62 (90)
T 1cxy_A 32 VYDLTPYVPNHPGPAGMMLVWCGQESTEAWE 62 (90)
T ss_dssp EEECTTTGGGCCSSTTTTGGGTTSBCHHHHH
T ss_pred EEECccchhhCcChHHHHHHHCCcchhHHHh
Confidence 5899999999999999999888884 5555
No 102
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=35.96 E-value=42 Score=26.83 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=38.8
Q ss_pred HhcCCCCchhHHhhCCCCHHhHHHHHHhhcCChHHHH---HHHhhchhHHHHHHHHHhcc
Q psy4828 39 VRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRA---EMLNERRGHAAKTFLNLLEH 95 (448)
Q Consensus 39 ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~---~~~~~~~~~~~~~~l~lL~~ 95 (448)
++....-++.+...|+||+++.+.|+.- ....+.-. .++...|+.....|+..|..
T Consensus 20 l~~~~~lld~L~~~~VLt~~~~e~I~~~-~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~ 78 (100)
T 3crd_A 20 VLVEGLVLQYLYQEGILTENHIQEINAQ-TTGLRKTMLLLDILPSRGPKAFDTFLDSLQE 78 (100)
T ss_dssp SCSSCSSHHHHHHHTSSCHHHHHHHTTC-SSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT
T ss_pred cCcchhHHHHHHHCCCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 3334445788999999999999999884 33333222 35566677778888888865
No 103
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=35.66 E-value=2.6e+02 Score=25.50 Aligned_cols=137 Identities=16% Similarity=0.230 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhhccchhhHHHHhhc-chhhHHHhhcc-CcchH-HHHHHH--HHHHHhh-c-ChhHHHhhh------cCC
Q psy4828 192 MQSVARCLQMMLRIDEYRIAFINVD-GIRTLLSVLSG-RVNFQ-IQYQLI--FCLWVLT-F-NPKLADRMN------KFN 258 (448)
Q Consensus 192 ~~~~~~~l~~lL~~~~~R~~f~~~~-gv~~L~~lL~~-~~~~Q-l~Y~~l--l~lWlLS-F-~~~~~~~l~------~~~ 258 (448)
...+++||..++..+.-...+.+++ ++..|...|.+ ....- .--+++ +|.|-=. = ...+.+.|. +..
T Consensus 71 ~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~ 150 (233)
T 2f31_A 71 QHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVE 150 (233)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcc
Confidence 3458899999998887777666665 45555555532 12111 112222 3333110 0 111222221 111
Q ss_pred CHHHHHHHhhhhh-hhh---------hcccCCCchhHHHHHHHHHHhcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHH
Q psy4828 259 VIPTLADILSDSV-KEK---------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQA 328 (448)
Q Consensus 259 iI~~L~~ilk~~~-KEK---------NLl~~~~~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~ 328 (448)
-...+++.++... .|= .++..+++-+.+-+--.++..+|+.++++.|..- .+++|..-++.-.+.-++
T Consensus 151 RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~--~~~~L~~Qi~~fe~~~~e 228 (233)
T 2f31_A 151 RFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREI--ENEDMKVQLCVFDEQGDE 228 (233)
T ss_dssp TTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHC--CCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhcc--CCHHHHHHHHHHHHHHHh
Confidence 2223444443211 111 3455555545444444578889999999999754 488888877776666544
Q ss_pred Hh
Q psy4828 329 SV 330 (448)
Q Consensus 329 ~~ 330 (448)
..
T Consensus 229 D~ 230 (233)
T 2f31_A 229 DF 230 (233)
T ss_dssp HH
T ss_pred CH
Confidence 43
No 104
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=34.71 E-value=73 Score=35.28 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHhhccCC---ChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHh
Q psy4828 374 LLKSLIHLLETSR---DPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444 (448)
Q Consensus 374 llk~L~~lL~~S~---D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 444 (448)
+.+.+...| .+. .|.+.+-||.-||.|....+ +..+.. .-..+++.|.++++.||-.|..|++.+.
T Consensus 456 l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 456 FTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLT--KAQLIE--LMPILATFLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSC--HHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCC--HHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHH
No 105
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=34.24 E-value=7.8 Score=30.29 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.8
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ 419 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~ 419 (448)
.+|+..|+..||.| .++....||+
T Consensus 28 VYDvT~f~~~HPGG-~~i~~~aG~D 51 (82)
T 1x3x_A 28 VHDMTSFYKEHPGG-KVILNKAGQD 51 (82)
T ss_dssp EEECGGGGGGCTTG-GGGGGGTTSB
T ss_pred EEECCcchhhCcCh-hhhhhhCCCC
Confidence 58999999999999 8887777775
No 106
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=34.03 E-value=77 Score=27.80 Aligned_cols=66 Identities=6% Similarity=0.003 Sum_probs=40.7
Q ss_pred HHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHh
Q psy4828 108 LIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQL 184 (448)
Q Consensus 108 li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L 184 (448)
-|+|++...+.... +....+-+-|++.++-++..|+.+|-.++.....++..+.. ..|++-+...+
T Consensus 38 eicD~I~~~~~~~k-----------eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~ 104 (163)
T 1x5b_A 38 DICDKVGSTPNGAK-----------DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVI 104 (163)
T ss_dssp HHHHHHHHSSSHHH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 36677776654333 23334667778889999999999999998764333321111 44555554444
No 107
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=33.55 E-value=2.6e+02 Score=25.52 Aligned_cols=69 Identities=7% Similarity=0.090 Sum_probs=45.8
Q ss_pred HHHHhhhcCCchhHHHHHHHHHHHHHh-cccCCCC-hhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhc
Q psy4828 136 SQFLNLLNGSDGFIINMTAKIIAKIAC-WSVDLLN-PSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLR 204 (448)
Q Consensus 136 ~~fl~lL~~~d~~I~~~a~~iLt~l~~-~~~~~~~-~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~ 204 (448)
..++..+.+..+-+...++..|+.++. +|....+ ...+..++..+...+..++++....+..++..+-+
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 345677788888999999999998875 4544333 33456676777777765444444456677776543
No 108
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=32.64 E-value=3.3e+02 Score=26.02 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHHHHhhccchhhHHHHhhcchhhHHHhhccCc------chHHHHHHHHHHHHh--hcChhHHHhhhcCCCHHHHH
Q psy4828 193 QSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV------NFQIQYQLIFCLWVL--TFNPKLADRMNKFNVIPTLA 264 (448)
Q Consensus 193 ~~~~~~l~~lL~~~~~R~~f~~~~gv~~L~~lL~~~~------~~Ql~Y~~ll~lWlL--SF~~~~~~~l~~~~iI~~L~ 264 (448)
-.+...+|-++.+++-|..|.+.+..-.|...|.... .+.+ .++-++=-| +=+++++..+-..++||...
T Consensus 74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRL--tsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRL--TSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHH--HHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhh--hHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3467788888899999999999987777777774211 1333 333333333 34556777777778888888
Q ss_pred HHhhhh
Q psy4828 265 DILSDS 270 (448)
Q Consensus 265 ~ilk~~ 270 (448)
.+....
T Consensus 152 rime~G 157 (268)
T 2fv2_A 152 RIMESG 157 (268)
T ss_dssp HHHHHS
T ss_pred HHHhhc
Confidence 876443
No 109
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=32.44 E-value=11 Score=29.37 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=18.8
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ 419 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~ 419 (448)
.+|+..|+..||.|..++-...||+
T Consensus 30 VYDvt~f~~~HPGG~~~il~~aG~D 54 (82)
T 1mj4_A 30 VFDVTEFVDLHPGGPSKLMLAAGGP 54 (82)
T ss_dssp EEECTTTGGGSTTCHHHHHTTTTSB
T ss_pred EEEchHHHHhCCCHhHHHHHHcCCC
Confidence 6899999999999955444445554
No 110
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=32.24 E-value=5.9e+02 Score=28.71 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=49.1
Q ss_pred HHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 373 ~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
+.+.+++++|..+.||.+---|+.-+|-..---|. ..++ +.+-.|+.++|++||..|..|+..++.+
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~~ai------d~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAI------DVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHH------HHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHH------HHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 34666777776788999888888888877543221 2222 3455667889999999999999999865
No 111
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=31.52 E-value=42 Score=27.73 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=41.0
Q ss_pred cHHHHHHHHHhcCCCCch----hHHhhCCCCHHhHHHHHHhhcCChH-HHH--HHHhhchhHHHHHHHHHhcc
Q psy4828 30 SVLQQQATEVRNQRPNWN----TYQQSQMISKEDYDFITVFDTASSA-KRA--EMLNERRGHAAKTFLNLLEH 95 (448)
Q Consensus 30 ~~l~~~~~~ir~r~i~W~----~~~ra~~is~~d~~~ik~~d~~~~~-~r~--~~~~~~~~~~~~~~l~lL~~ 95 (448)
.++...+....+|--.=+ .+. .+.|++++++.|++- ..+.+ .|. .++...|+.+...|++.|..
T Consensus 20 ~fv~~hR~~Li~rv~~V~~ILD~Ll-~~VLteee~e~I~ae-~T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e 90 (107)
T 3kat_A 20 HFVDQYREQLIARVTSVEVVLDKLH-GQVLSQEQYERVLAE-NTRPSQMRKLFSLSQSWDRKCKDGLYQALKE 90 (107)
T ss_dssp HHHHHTHHHHHTTCCCHHHHHHHHT-TTTSCHHHHHHHHHC-CSHHHHHHHHHHGGGGCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHH-HhhCCHHHHHHHHhC-CCCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 455555555555543332 333 369999999999984 43333 221 45566778888999988876
No 112
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=31.42 E-value=6.8 Score=32.78 Aligned_cols=34 Identities=15% Similarity=0.375 Sum_probs=26.5
Q ss_pred HhhHhhHhhhCcchhHHHHHhCcHH--HHHhhhcCC
Q psy4828 395 SYDIGEYVRHCPRGKHVIEQLGGKQ--LVMQLLSHE 428 (448)
Q Consensus 395 c~DIge~vr~~p~gr~il~~lg~K~--~vM~Lm~h~ 428 (448)
.+|+..|+..||.|..++....||+ ..+.-..|+
T Consensus 48 VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs 83 (112)
T 2keo_A 48 VYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQF 83 (112)
T ss_dssp EEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHS
T ss_pred EEECCcchhhCCCchhhhhhhCCccchHHHhHcCCC
Confidence 6899999999999999998888875 444443354
No 113
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.78 E-value=2e+02 Score=23.52 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=58.4
Q ss_pred cccccccccHHHHHHHHHhcCCCCchhHHhhCCCCHHhHHHHHHhhcCC-hHHHHHHHh----hc-h-hHHHHHHHHHhc
Q psy4828 22 KTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTAS-SAKRAEMLN----ER-R-GHAAKTFLNLLE 94 (448)
Q Consensus 22 ~~~~~~~~~~l~~~~~~ir~r~i~W~~~~ra~~is~~d~~~ik~~d~~~-~~~r~~~~~----~~-~-~~~~~~~l~lL~ 94 (448)
...-.+...+|...+..+. ..|..++|.=-+|+.+.+.|+.=...+ .++..+++. .+ + ..-+..|+..|.
T Consensus 6 ~~~~~lt~~~l~~ia~~lg---~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~~Atv~~L~~aL~ 82 (118)
T 2of5_H 6 AETGFLTQSNLLSVAGRLG---LDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQPGAVGLLVQALE 82 (118)
T ss_dssp TTTCCCCHHHHHHHHHTCC---TTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSCSSHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHh---hHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 3344567778888888874 389999999999999999998644333 233344442 22 2 466788999999
Q ss_pred ccChhhHHHHHH
Q psy4828 95 HISKDSTIQYIL 106 (448)
Q Consensus 95 ~~~~~d~vqyvL 106 (448)
.+.+.|++.-+-
T Consensus 83 ~~~r~diae~l~ 94 (118)
T 2of5_H 83 QSDRQDVAEEVR 94 (118)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCcHHHHHHHH
Confidence 999988875544
No 114
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=29.92 E-value=1e+02 Score=26.71 Aligned_cols=66 Identities=8% Similarity=-0.052 Sum_probs=41.4
Q ss_pred HHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhh-HHHHHHHHHHHh
Q psy4828 108 LIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSD-LNFYLTWLKDQL 184 (448)
Q Consensus 108 li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~-l~~~l~~l~~~L 184 (448)
-|+|++...+.-.. +.-..+-+-|++.++-++..|+.+|-.++.....++..+. -..|++-|...+
T Consensus 34 eicD~I~~~~~~pk-----------~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~ 100 (149)
T 3g2s_A 34 GFCEQLNEDFEGPP-----------LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVV 100 (149)
T ss_dssp HHHHHGGGSSSHHH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcHH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHH
Confidence 45777776653332 2233466777888999999999999999875543332211 145666665554
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=29.85 E-value=46 Score=37.39 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhccC----CChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 372 YELLKSLIHLLETS----RDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 372 ~~llk~L~~lL~~S----~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
-+++..|..+.+.. ..|.+-+.+|.=+|.|.+....-...+.. +-..+++.|.++++.|+..|..|++++.-
T Consensus 494 ~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~--vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 494 VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 34555555544321 22344446899999877653322233332 33457778889999999999999999863
No 116
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=29.05 E-value=66 Score=35.25 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=51.1
Q ss_pred HHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcC---CChhHHHHHHHHHHHHhcc
Q psy4828 377 SLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH---EDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 377 ~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm~~ 446 (448)
.+..+|.++.|+.+-..|+.=+-..++.+=..-..=++.+.|..+|+++.+ ..+-||.....|+-.|+.+
T Consensus 61 ~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~ 133 (963)
T 2x19_B 61 FSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALS 133 (963)
T ss_dssp HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 466677777888888888888888887641110001344568899999965 4689999999999999876
No 117
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain modular protein structure, interdomain mobility, domain, inflammation; NMR {Homo sapiens}
Probab=28.64 E-value=32 Score=31.94 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=37.5
Q ss_pred CchhHHhhCCCCHHhHHHHHHhhcCChHHHH---HHHhhchhHHHHHHHHHhcccC
Q psy4828 45 NWNTYQQSQMISKEDYDFITVFDTASSAKRA---EMLNERRGHAAKTFLNLLEHIS 97 (448)
Q Consensus 45 ~W~~~~ra~~is~~d~~~ik~~d~~~~~~r~---~~~~~~~~~~~~~~l~lL~~~~ 97 (448)
=+|.+. .|.||+++++-|++ ...+..+-. .++...|+.+...|++.|....
T Consensus 152 lLD~Ll-~~vit~e~~e~I~a-~~T~~~q~R~Lld~v~~kG~~a~~~F~~~L~e~~ 205 (215)
T 2kn6_A 152 LLDALY-GKVLTDEQYQAVRA-EPTNPSKMRKLFSFTPAWNWTCKDLLLQALRESQ 205 (215)
T ss_dssp HHHHTT-TTTSCHHHHHHHHT-CSSHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HhhCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 488899 99999999999996 333333222 3555567888999999988743
No 118
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=27.57 E-value=82 Score=28.95 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=43.4
Q ss_pred HHHHhhccc--hhhHHHHhhcchhhHHHhhc----c------CcchHHHHHHHHHHHHhhcChhHHHhh-hcCCCHHHHH
Q psy4828 198 CLQMMLRID--EYRIAFINVDGIRTLLSVLS----G------RVNFQIQYQLIFCLWVLTFNPKLADRM-NKFNVIPTLA 264 (448)
Q Consensus 198 ~l~~lL~~~--~~R~~f~~~~gv~~L~~lL~----~------~~~~Ql~Y~~ll~lWlLSF~~~~~~~l-~~~~iI~~L~ 264 (448)
.|...||.. .+-+.| ..+|+..|++.|. + ......+|+++.|+=.+-=+....+.+ .+.+.|..|+
T Consensus 24 ~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~ 102 (233)
T 2f31_A 24 SLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLV 102 (233)
T ss_dssp HHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHH
T ss_pred HHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHH
Confidence 333344433 445556 4678777777662 1 225789999999999998777776766 4445555555
Q ss_pred HH
Q psy4828 265 DI 266 (448)
Q Consensus 265 ~i 266 (448)
..
T Consensus 103 ~~ 104 (233)
T 2f31_A 103 RA 104 (233)
T ss_dssp TT
T ss_pred HH
Confidence 44
No 119
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=27.36 E-value=28 Score=26.52 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=18.2
Q ss_pred HhhHhhhCcchhHHHHHhCc
Q psy4828 398 IGEYVRHCPRGKHVIEQLGG 417 (448)
Q Consensus 398 Ige~vr~~p~gr~il~~lg~ 417 (448)
||++|+.||+...++.++|.
T Consensus 11 I~eiv~~~P~~~~vf~~~G~ 30 (73)
T 2k5e_A 11 FAQALQTHPGVAGVLRSYNL 30 (73)
T ss_dssp HHHHHHHCTHHHHHHHHTTG
T ss_pred HHHHHHHCHHHHHHHHHcCC
Confidence 79999999999999999884
No 120
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=26.83 E-value=75 Score=22.88 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhcC-----ChhHHHHHHHHHHhhccc
Q psy4828 174 NFYLTWLKDQLKLAN-----NDYMQSVARCLQMMLRID 206 (448)
Q Consensus 174 ~~~l~~l~~~L~~~~-----~~~~~~~~~~l~~lL~~~ 206 (448)
-.+++||++++..+. .+.+..+++|++..+.+.
T Consensus 7 ~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 7 YAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 467888988876531 235667999999877664
No 121
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=26.73 E-value=1.1e+02 Score=26.45 Aligned_cols=82 Identities=9% Similarity=-0.044 Sum_probs=0.0
Q ss_pred HHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHhhh-
Q psy4828 109 IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQLKL- 186 (448)
Q Consensus 109 i~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L~~- 186 (448)
|+|++...+.... +....+-+-|++.++.++..|+.+|-.++.....++..+.. ..|++-|...+..
T Consensus 25 icD~I~~~~~~~k-----------~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k 93 (148)
T 1mhq_A 25 FCEQVNTDPNGPT-----------HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPK 93 (148)
T ss_dssp HHHHHHHSSHHHH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCccHH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccc
Q ss_pred -----cCChhHHHHHHHHHH
Q psy4828 187 -----ANNDYMQSVARCLQM 201 (448)
Q Consensus 187 -----~~~~~~~~~~~~l~~ 201 (448)
.+.....-++.+++.
T Consensus 94 ~~~~~~~~~Vk~kil~li~~ 113 (148)
T 1mhq_A 94 YLGSWATGKVKGRVIEILFS 113 (148)
T ss_dssp TTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
No 122
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=26.44 E-value=54 Score=36.15 Aligned_cols=72 Identities=10% Similarity=0.006 Sum_probs=52.9
Q ss_pred HHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcC---CChhHHHHHHHHHHHHhccCC
Q psy4828 377 SLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH---EDPNVRYEALLAVQKLMVHNW 448 (448)
Q Consensus 377 ~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm~~~W 448 (448)
.+..+|..+.|+.+-..|+.=+-..++.+=..-..=++.+.|..||+++.+ +.+-||.....|+-.|+.+-|
T Consensus 43 ~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~ 117 (971)
T 2x1g_F 43 FSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML 117 (971)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence 567888777888888888888888887531110001344678999999965 368999999999999998833
No 123
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=25.08 E-value=23 Score=22.76 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=15.8
Q ss_pred hHHHHHH--HHhhCC--cccCCCCC
Q psy4828 335 SFDEYKT--EVKSGR--LEWSPVHR 355 (448)
Q Consensus 335 sfDeY~~--El~SG~--L~WSP~H~ 355 (448)
|+|.|++ |+.||- .+-+|+|-
T Consensus 2 sydayrtdce~LSG~rTFrLaPa~W 26 (34)
T 2dco_A 2 SYDAYRTDCEELSGARTFRLAPAQW 26 (34)
T ss_dssp CGGGTHHHHHHHHTGGGGTSSSSTT
T ss_pred CcchhhcchhhhcCcceEEechHHH
Confidence 6788875 788987 44599994
No 124
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=24.65 E-value=1.3e+02 Score=26.65 Aligned_cols=82 Identities=6% Similarity=-0.041 Sum_probs=0.0
Q ss_pred HHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhH-HHHHHHHHHHhh--
Q psy4828 109 IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDL-NFYLTWLKDQLK-- 185 (448)
Q Consensus 109 i~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l-~~~l~~l~~~L~-- 185 (448)
|+|++...+.-.. +....+.+-|++.++-++..|+.+|-.++.....++..+.. ..|++-|...+.
T Consensus 37 icD~I~~~~~~~k-----------~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k 105 (171)
T 1juq_A 37 FCDQINKELEGPQ-----------IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPK 105 (171)
T ss_dssp HHHHHHHSTTHHH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCccHH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccc
Q ss_pred ----hcCChhHHHHHHHHHH
Q psy4828 186 ----LANNDYMQSVARCLQM 201 (448)
Q Consensus 186 ----~~~~~~~~~~~~~l~~ 201 (448)
..+.....-++.+++.
T Consensus 106 ~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 106 YLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp CCCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
No 125
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=24.50 E-value=31 Score=26.71 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=18.1
Q ss_pred HhhHhhhCcchhHHHHHhC
Q psy4828 398 IGEYVRHCPRGKHVIEQLG 416 (448)
Q Consensus 398 Ige~vr~~p~gr~il~~lg 416 (448)
||++++.||+.+.++.++|
T Consensus 15 I~elv~~~P~~~~vl~~~G 33 (81)
T 2fi0_A 15 VAEVVDKHPEVLEILVELG 33 (81)
T ss_dssp HHHHHHHCGGGHHHHTTTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 6899999999999999999
No 126
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=24.09 E-value=8e+02 Score=27.57 Aligned_cols=140 Identities=9% Similarity=0.082 Sum_probs=75.9
Q ss_pred HHHHhhcCChHHHHHHHhh--chhHHHHHHHHHhcccChhhHHHHHHHHHHHHHhhc---hhHHHHHHHhhhc-C-CCch
Q psy4828 62 FITVFDTASSAKRAEMLNE--RRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQED---RSRVEIFKEYSQT-K-REPV 134 (448)
Q Consensus 62 ~ik~~d~~~~~~r~~~~~~--~~~~~~~~~l~lL~~~~~~d~vqyvL~li~dll~~~---~~~~~~f~~~~~~-~-~~~~ 134 (448)
+++.+-..+.++-.++... ..+.+...|+..|..++....++.+..+|.. .. .+.+.++...... . ....
T Consensus 316 Lv~~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~---~~l~~~ea~~~l~~~~~~~~Pt~e~ 392 (1056)
T 1lsh_A 316 LTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKRTLAS---EQLTSAEATQIVASTLSNQQATRES 392 (1056)
T ss_dssp HHHHHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHHHHHc---CCCCHHHHHHHHHHhhccCCCCHHH
Confidence 3344444544544444443 2245778899999999988888888877542 11 1333333221111 1 1122
Q ss_pred hHHHHhhhcCC----chhHHHHHHHHHHHHH---hcccCCCChhhHHHHHHHHHHHhhhcCChhHHHHHHHHHHhhc
Q psy4828 135 CSQFLNLLNGS----DGFIINMTAKIIAKIA---CWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLR 204 (448)
Q Consensus 135 ~~~fl~lL~~~----d~~I~~~a~~iLt~l~---~~~~~~~~~~~l~~~l~~l~~~L~~~~~~~~~~~~~~l~~lL~ 204 (448)
...|..++.++ ++.+...+...++.|+ |.....-+.+.++.+.+.+.+.+...+.+-...++++|.++-.
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 34455666553 4556555555555554 3322112345578888888877765433334456777776543
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.89 E-value=1.7e+02 Score=26.78 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=17.6
Q ss_pred HHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 421 VMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 421 vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
|..-++|+||.|...||.-+--+|-
T Consensus 50 l~krl~~~n~~v~l~aL~LLe~~vk 74 (226)
T 3zyq_A 50 IKKKVNDKNPHVALYALEVMESVVK 74 (226)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3344568999999998877666553
No 128
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.70 E-value=2.9e+02 Score=23.67 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhch-hHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhhHHHHHHH
Q psy4828 101 TIQYILVLIDDILQEDR-SRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTW 179 (448)
Q Consensus 101 ~vqyvL~li~dll~~~~-~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~l~~~l~~ 179 (448)
+=-|++.=|+++..+.+ +...-+.+ .+++-|+...+.+..+|+++|.-|+..|+ +.|..+
T Consensus 27 ~pgylm~EIA~~T~~s~~~~~~eim~-----------~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs--------~~f~~~ 87 (140)
T 1vdy_A 27 APVYKLEEICDLLRSSHVSIVKEFSE-----------FILKRLDNKSPIVKQKALRLIKYAVGKSG--------SEFRRE 87 (140)
T ss_dssp CCHHHHHHHHHHHHHSCHHHHHHHHH-----------HHHHHHTSSSHHHHHHHHHHHHHHTTTSC--------HHHHHH
T ss_pred CcHHHHHHHHHHHHhcchhHHHHHHH-----------HHHHHhcCCCcceeehHHHHHHHHHHhCC--------HHHHHH
Confidence 45788888888876654 33232333 36777888888999999999999987775 557667
Q ss_pred HHH
Q psy4828 180 LKD 182 (448)
Q Consensus 180 l~~ 182 (448)
+..
T Consensus 88 ~r~ 90 (140)
T 1vdy_A 88 MQR 90 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 129
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.70 E-value=1.4e+02 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.269 Sum_probs=33.7
Q ss_pred HHhhHhhHhhhCcch--hHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhcc
Q psy4828 394 ASYDIGEYVRHCPRG--KHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446 (448)
Q Consensus 394 Ac~DIge~vr~~p~g--r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 446 (448)
...+|++....+|+. ..|+ +.|++=|++++++|+|-||+.+.-|+.|
T Consensus 31 lm~EIA~~T~~s~~~~~~eim------~~L~kRL~~k~~~vk~KaL~lL~yL~~~ 79 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFS------EFILKRLDNKSPIVKQKALRLIKYAVGK 79 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH------HHHHHHHTSSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcchhHHHHHH------HHHHHHhcCCCcceeehHHHHHHHHHHh
Confidence 456777777765532 3333 5667777889999999999999888754
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=22.18 E-value=1.1e+02 Score=28.04 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhhhcCCCchhHHHHhhhcCCchhHHHHHHHHHHHHHhcccCCCChhh-HHHHHHHHH
Q psy4828 103 QYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSD-LNFYLTWLK 181 (448)
Q Consensus 103 qyvL~li~dll~~~~~~~~~f~~~~~~~~~~~~~~fl~lL~~~d~~I~~~a~~iLt~l~~~~~~~~~~~~-l~~~l~~l~ 181 (448)
.+++. |+|++..++.-.. +....+-+-|++.++-++..|+.+|..++.....++..+. -+.|++-|.
T Consensus 27 ~~ile-icD~I~~~~~~~k-----------~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~ 94 (226)
T 3zyq_A 27 ESILQ-ICDLIRQGDTQAK-----------YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK 94 (226)
T ss_dssp HHHHH-HHHHHHTTSSCHH-----------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred HHHHH-HHHHHhCCCccHH-----------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence 44554 5666665443222 2233466677888999999999999999876543332111 145555555
Q ss_pred HHhh
Q psy4828 182 DQLK 185 (448)
Q Consensus 182 ~~L~ 185 (448)
..+.
T Consensus 95 ~l~~ 98 (226)
T 3zyq_A 95 DLLK 98 (226)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4443
No 131
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.58 E-value=1.4e+02 Score=27.45 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHhhcc---CCCh--hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHH
Q psy4828 369 EKNYELLKSLIHLLET---SRDP--LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443 (448)
Q Consensus 369 e~~~~llk~L~~lL~~---S~D~--~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 443 (448)
|+---+.|+|+-+=.. -.|| .++|++|.+-.+++-. |+||-.|- +.|.-|-..+-++--|.|..+..+.
T Consensus 38 EDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i~La-----qaviyLA~aPKSNs~y~A~~~A~~~ 111 (201)
T 3bge_A 38 GDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA-YEGERAIA-----QAIIYLSVAPKSNAVYTAFNTAKQQ 111 (201)
T ss_dssp CCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH-HHHHHHHH-----HHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC-cHHHHHHH-----HHHHHHHcCCccHHHHHHHHHHHHH
Confidence 3445566777666421 1344 5888899999999987 99997773 5677788888888889888888776
Q ss_pred hc
Q psy4828 444 MV 445 (448)
Q Consensus 444 m~ 445 (448)
+-
T Consensus 112 v~ 113 (201)
T 3bge_A 112 AK 113 (201)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.49 E-value=3.7e+02 Score=23.25 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhccCCChhHHHHHHhhHhhHhhhCcchhHHHHHhCcHHH---HHhhhcC-CChhHHHHHHHHHHH
Q psy4828 372 YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQL---VMQLLSH-EDPNVRYEALLAVQK 442 (448)
Q Consensus 372 ~~llk~L~~lL~~S~D~~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~---vM~Lm~h-~d~eVr~eAL~avQk 442 (448)
-+.+|.|.+-| .+.||.+.--|+.=+-..|+ .-|...-...+-|+. +..++.. .+++||..+|..+|.
T Consensus 51 keA~ral~krl-~~~n~~vql~AL~LLd~~vk--NcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 51 KDCLKAIMKRV-NHKVPHVALQALTLLGACVA--NCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE 122 (163)
T ss_dssp HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHH--HTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH--HhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 57778888888 46788766556655666666 345555544444432 2344443 689999999988775
No 133
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=20.15 E-value=53 Score=25.18 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=18.4
Q ss_pred HhhHhhhCcchhHHHHHhCc
Q psy4828 398 IGEYVRHCPRGKHVIEQLGG 417 (448)
Q Consensus 398 Ige~vr~~p~gr~il~~lg~ 417 (448)
||++|+.||+...++.++|.
T Consensus 9 I~eIv~~~P~~~~vf~~~G~ 28 (76)
T 2k53_A 9 IADVLQMDRGTAPIFINNGM 28 (76)
T ss_dssp HHHHHHHCGGGHHHHHHTTC
T ss_pred HHHHHHHCHHHHHHHHHcCC
Confidence 79999999999999999883
No 134
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=20.10 E-value=1.6e+02 Score=29.28 Aligned_cols=73 Identities=21% Similarity=0.244 Sum_probs=49.6
Q ss_pred HHHHHHHhhccc--hhhHHHHhhcchhhHHHhhc----c------CcchHHHHHHHHHHHHhhcChhHHHhh-hcCCCHH
Q psy4828 195 VARCLQMMLRID--EYRIAFINVDGIRTLLSVLS----G------RVNFQIQYQLIFCLWVLTFNPKLADRM-NKFNVIP 261 (448)
Q Consensus 195 ~~~~l~~lL~~~--~~R~~f~~~~gv~~L~~lL~----~------~~~~Ql~Y~~ll~lWlLSF~~~~~~~l-~~~~iI~ 261 (448)
.+..|...||.. .+-+.|. .+|...|+++|. . ......+|+++-|+-.+-=+....+.+ .+.+.|.
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~ 165 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGIL 165 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHH
Confidence 344555555554 4556675 778888888773 1 224689999999999998777666666 4456777
Q ss_pred HHHHHhh
Q psy4828 262 TLADILS 268 (448)
Q Consensus 262 ~L~~ilk 268 (448)
.|+..+.
T Consensus 166 ~l~~~L~ 172 (383)
T 3eg5_B 166 LLVRAMD 172 (383)
T ss_dssp HHHHTCC
T ss_pred HHHHHhC
Confidence 7777663
No 135
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=20.07 E-value=1.5e+02 Score=27.34 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=50.5
Q ss_pred HHHHHHHHhhcc---CCCh--hHHHHHHhhHhhHhhhCcchhHHHHHhCcHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q psy4828 373 ELLKSLIHLLET---SRDP--LVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMV 445 (448)
Q Consensus 373 ~llk~L~~lL~~---S~D~--~vlaVAc~DIge~vr~~p~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 445 (448)
-+.|+|+-+=.+ -.|| .++|++|.+-.+++-. |+||-.| -+.|+-|-..+-++--|.|..+..+.+-
T Consensus 48 ~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~-PE~~i~L-----aqaviyLA~aPKSNs~y~A~~~A~~~v~ 119 (204)
T 2r9g_A 48 SICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL-PEARIPL-----ADVVVDLCLSPKSNSAYMALDAALADIR 119 (204)
T ss_dssp HHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT-TTTHHHH-----HHHHHHHHHSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC-CHHHHHH-----HHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 455666665421 2455 5788899999999987 9999988 3577888888888888999888877653
Done!