RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4828
(448 letters)
>gnl|CDD|238159 cd00256, VATPase_H, VATPase_H, regulatory vacuolar ATP synthase
subunit H (Vma13p); activation component of the
peripheral V1 complex of V-ATPase, a heteromultimeric
enzyme which uses ATP to actively transport protons
into organelles and extracellular compartments. The
topology is that of a superhelical spiral, in part the
geometry is similar to superhelices composed of
armadillo repeat motifs, as found in importins for
example.
Length = 429
Score = 549 bits (1417), Expect = 0.0
Identities = 243/431 (56%), Positives = 318/431 (73%), Gaps = 15/431 (3%)
Query: 30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTF 89
S Q+ A EVR ++ NW +Y +SQMIS+EDY FI + + E+L+ G KTF
Sbjct: 1 SQFQEIAAEVRARKINWQSYMRSQMISEEDYQFIKALEKKRV--KEEILDVLSGQYVKTF 58
Query: 90 LNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFI 149
+NLL I KD T++Y+L LIDD+LQED +RV++F + + K++ F NLLN D FI
Sbjct: 59 VNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKK-TWEPFFNLLNRQDQFI 117
Query: 150 INMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLK-LANNDYMQSVARCLQMMLRIDEY 208
++M+ I+AK+AC+ + + SDL++Y WLK+QL + NNDY+Q+ ARCLQM+LR+DEY
Sbjct: 118 VHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEY 177
Query: 209 RIAFINVDGIRTLLSVLSGRV-NFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADIL 267
R AF+ DG+ TL+ +LS FQ+QYQ IFC+W+LTFNP A+ + + ++I L+DIL
Sbjct: 178 RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDIL 237
Query: 268 SDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE 317
+S KEK NLI K + + K + MVQ KVLK L LEQRK+DDED+ +
Sbjct: 238 KESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTD 297
Query: 318 DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKS 377
D++FL E+L+ SVQDLSSFDEYK+E++SGRL WSPVH+S +FWRENA RL+EKNYELLK
Sbjct: 298 DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKI 357
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
LIHLLETS DP++L+VA +DIGEYVRH PRGK V+EQLGGKQ VM+LL+HEDPNVRYEAL
Sbjct: 358 LIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL 417
Query: 438 LAVQKLMVHNW 448
LAVQKLMVHNW
Sbjct: 418 LAVQKLMVHNW 428
>gnl|CDD|217434 pfam03224, V-ATPase_H_N, V-ATPase subunit H. The yeast
Saccharomyces cerevisiae vacuolar H+-ATPase (V-ATPase)
is a multisubunit complex responsible for acidifying
organelles. It functions as an ATP dependent proton pump
that transports protons across a lipid bilayer. This
domain corresponds to the N terminal domain of the H
subunit of V-ATPase. The N-terminal domain is required
for the activation of the complex whereas the C-terminal
domain is required for coupling ATP hydrolysis to proton
translocation.
Length = 312
Score = 283 bits (725), Expect = 7e-93
Identities = 110/317 (34%), Positives = 172/317 (54%), Gaps = 25/317 (7%)
Query: 30 SVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHAAKTF 89
+ LQ+ +R++ W+ Y +S +IS+ED + I + A +R ++L+ K F
Sbjct: 1 THLQEIRNNIRSRPIPWDGYVRSGLISEEDLELIKKLEKAPLEQRRQLLSSDLDQYVKLF 60
Query: 90 LNLLEHI-SKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGF 148
++LL + S + +QYILVLIDD+L +D SR ++F E S+ + S FL LL+ D F
Sbjct: 61 VSLLSKLASNEDIVQYILVLIDDLLSDDPSRAQLFLELSKLEDPKPYSPFLKLLSNQDDF 120
Query: 149 IINMTAKIIAKIACWSVDLLN---PSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRI 205
I+ + I+AK+ +S N L L+ L L+ + RCLQ +LR+
Sbjct: 121 IVLLALFILAKLLAYSKKKSNKLVEEALPLLLSLLSSLLQSSTLGLQYIAVRCLQELLRV 180
Query: 206 DEYRIAFINVDGIRTLLSVL----SGRVNFQIQYQLIFCLWVLTFNPKLADRM--NKFNV 259
EYR F DG+ TL+ +L S + Q+QY + CLW+L+F P++A+ + K ++
Sbjct: 181 KEYRKLFWESDGVSTLIDILQAGSSNKSGLQLQYYTLLCLWLLSFEPEIAEELVQKKLDL 240
Query: 260 IPTLADILSDSVKEK----------NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRK 309
IP L DIL S+KEK NL+ K K+ MV + +LK L L +RK
Sbjct: 241 IPLLLDILKTSIKEKVVRVSLATLRNLLSKAV-----KDFIEVMVDNGLLKLLQNLSERK 295
Query: 310 FDDEDIVEDVQFLNEKL 326
+ DED++ED++FL E L
Sbjct: 296 WSDEDLLEDLEFLKEIL 312
>gnl|CDD|152134 pfam11698, V-ATPase_H_C, V-ATPase subunit H. The yeast
Saccharomyces cerevisiae vacuolar H+-ATPase (V-ATPase)
is a multisubunit complex responsible for acidifying
organelles. It functions as an ATP dependent proton pump
that transports protons across a lipid bilayer. This
domain corresponds to the C terminal domain of the H
subunit of V-ATPase. The N-terminal domain is required
for the activation of the complex whereas the C-terminal
domain is required for coupling ATP hydrolysis to proton
translocation.
Length = 119
Score = 200 bits (512), Expect = 1e-63
Identities = 77/118 (65%), Positives = 93/118 (78%)
Query: 331 QDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLV 390
+ L+SFDEY E+ SG LEWSPVH S +FW+ENA + E NYELLK L +LETS DPL
Sbjct: 1 KKLTSFDEYVAELNSGHLEWSPVHTSEKFWKENAMKFEENNYELLKKLAKILETSDDPLT 60
Query: 391 LSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
L+VA DIGE+VR P GK+++E+LG K VM+L+SHEDP VRYEALLAVQKLMV+NW
Sbjct: 61 LAVACNDIGEFVRLYPEGKNILEKLGVKARVMELMSHEDPEVRYEALLAVQKLMVNNW 118
>gnl|CDD|227556 COG5231, VMA13, Vacuolar H+-ATPase V1 sector, subunit H [Energy
production and conversion].
Length = 432
Score = 178 bits (453), Expect = 3e-51
Identities = 83/298 (27%), Positives = 147/298 (49%), Gaps = 17/298 (5%)
Query: 164 SVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYR-IAFINVDGIRTLL 222
S+ +L +L +L + CL + E R I + R +
Sbjct: 138 DNTSYVESNYLLFLEYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFM 197
Query: 223 SVLSGRV-NFQIQYQLIFCLWVLTFNPKLADRMNK-FNVIPTLADILSDSVKEK------ 274
+L V Q+QY + +W+LTF+ + A ++K ++I L I+ + KEK
Sbjct: 198 EILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCC 257
Query: 275 ----NLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASV 330
N+++K + + ++ + + K + +L +RK+ DE++V D++ + +L +
Sbjct: 258 GIVANVLDKSPKGYIFS----PLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313
Query: 331 QDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLV 390
+ L FD Y E+ SGRLEWSP H FW N L + NYE++K L L+++
Sbjct: 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTW 373
Query: 391 LSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
+ VA DI + VR P V+ + G K+++M L++H+D +V++EAL A+Q + W
Sbjct: 374 ICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISSEW 431
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 36.1 bits (84), Expect = 0.008
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 370 KNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHED 429
L +L+ LL +S + + A + + + GG ++QLL ED
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWA-LSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62
Query: 430 PNVRYEALLAVQKLMVHN 447
V AL A++ L
Sbjct: 63 EEVVKAALWALRNLAAGP 80
Score = 28.0 bits (63), Expect = 4.3
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 211 AFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFN-PKLADRMNKFNVIPTLADILSD 269
A I G+ L+S+LS + +Q + + L L+ + + +P L +L
Sbjct: 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 270 S 270
Sbjct: 61 E 61
Score = 27.7 bits (62), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 410 HVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ Q GG ++ LLS D NV+ EA A+ L N
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN 38
>gnl|CDD|218281 pfam04826, Arm_2, Armadillo-like. This domain contains
armadillo-like repeats. Proteins containing this domain
interact with numerous other proteins, through these
interactions they are involved in a wide variety of
processes including carcinogenesis, control of cellular
ageing and survival, regulation of circadian rhythm and
lysosomal sorting of G protein-coupled receptors.
Length = 254
Score = 37.7 bits (88), Expect = 0.008
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
L+ L+ LLE++ DP + +A +G + + +I LGG ++ LLS+ +P ++
Sbjct: 14 LQKLLALLESTEDPFIHEIALITLGNSAAY-SFNQDIIRDLGGIPIIANLLSNPNPEIKE 72
Query: 435 EALLAVQKLMV 445
+AL A+ L V
Sbjct: 73 KALNALNNLSV 83
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats. This family includes multiple
HEAT repeats.
Length = 88
Score = 34.6 bits (80), Expect = 0.011
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
L++L+ L + DP V + A+ +GE + L ++LL DP VR
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGEL-----GDPEALPAL------LELLKDPDPEVRR 49
Query: 435 EALLAVQKL 443
A A+ KL
Sbjct: 50 AAAEALGKL 58
>gnl|CDD|131097 TIGR02042, sir, ferredoxin-sulfite reductase. Distantly related to
the iron-sulfur hemoprotein of sulfite reductase (NADPH)
found in Proteobacteria and Eubacteria, sulfite
reductase (ferredoxin) is a cyanobacterial and plant
monomeric enzyme that also catalyzes the reduction of
sulfite to sulfide [Central intermediary metabolism,
Sulfur metabolism].
Length = 577
Score = 33.7 bits (77), Expect = 0.24
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 115 EDRSRVEIFKEYSQTKREPVCSQFLN 140
+ RS+VEI KE S REP+ Q L
Sbjct: 4 QKRSKVEILKERSNFLREPLNEQLLE 29
>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats. Approx. 40
amino acid repeat. Tandem repeats form superhelix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. Involved in transducing
the Wingless/Wnt signal. In plakoglobin arm repeats bind
alpha-catenin and N-cadherin.
Length = 41
Score = 28.2 bits (64), Expect = 0.91
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 409 KHVIEQLGGKQLVMQLLSHEDPNVRYEALLAV 440
K + GG +++LL ED V EA A+
Sbjct: 5 KQAVVDAGGLPALVELLKSEDEEVVKEAAWAL 36
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat. The HEAT repeat family is related to
armadillo/beta-catenin-like repeats (see pfam00514).
Length = 31
Score = 27.5 bits (62), Expect = 1.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 420 LVMQLLSHEDPNVRYEALLAVQKLM 444
L+++LL+ DP VR A A+ L
Sbjct: 4 LLLELLNDPDPEVREAAAEALGALA 28
>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat. Approx. 40
amino acid repeat. Tandem repeats form super-helix of
helices that is proposed to mediate interaction of
beta-catenin with its ligands. CAUTION: This family does
not contain all known armadillo repeats.
Length = 41
Score = 27.8 bits (63), Expect = 1.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 405 CPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443
P K + + G ++QLLS D V+ EA A+ L
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
>gnl|CDD|224299 COG1381, RecO, Recombinational DNA repair protein (RecF pathway)
[DNA replication, recombination, and repair].
Length = 251
Score = 29.2 bits (66), Expect = 3.5
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 71 SAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQT 129
+ E+ + ++ ++ I + Y+ L+D +L E+ E+F+ Y +T
Sbjct: 64 YGRGRELKTLTQAEPVGSYPGIISDIFALYSASYVAELLDRLLPEEDPNPELFELYLET 122
>gnl|CDD|217135 pfam02601, Exonuc_VII_L, Exonuclease VII, large subunit. This
family consist of exonuclease VII, large subunit
EC:3.1.11.6 This enzyme catalyzes exonucleolytic
cleavage in either 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme
is composed of one large subunit and 4 small ones.
Length = 295
Score = 29.6 bits (67), Expect = 3.7
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 313 EDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEW---SPVHRSAQFWRENAPRLHE 369
E +V D L +KL+ Q LS + + E + RL S + ++ RL E
Sbjct: 139 ELLVPDRTELLQKLEGLEQRLSRALKNRLEKEQDRLNLLRERLKSLSRRLLEQHEERLAE 198
Query: 370 KNYELLKSLIHLLETSRDPL 389
L+ S+ +LL + L
Sbjct: 199 LRDRLISSIQNLLSRKQSRL 218
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 29.5 bits (66), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 361 RENAPRLHE-KNYELLKSLIHLLETSRDPLVLSVA 394
R P LH+ LL SL+ L+T D +VL A
Sbjct: 97 RRQPPWLHKISRTPLLDSLLKCLKTDTDVVVLITA 131
>gnl|CDD|222393 pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is
frequently found N-terminal to the transposase, IS
family DDE_Tnp_1, pfam01609 and its relatives.
Length = 90
Score = 27.5 bits (62), Expect = 4.7
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 62 FITVFDTASSAK-RAEMLNERRGHAA----KTFLNLLEHISKDSTIQYILVLIDD 111
+ + S A E+ E G + FL L I TI+ +L +D
Sbjct: 26 LLALCAVLSGADSWREI--EEFGADKLEWLRKFLGLPNGIPSHDTIRRVLARLDP 78
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 28.8 bits (65), Expect = 4.9
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 56 SKEDYDFITVFDTASSAKRAEMLNERRGH--AAKTFLNLLEHISKDSTIQYILVLIDDIL 113
D I V D A SAKR+ G A + + L + + L+ IL
Sbjct: 20 VLSDGWLIAVADGAGSAKRS-----DVGARLAVEAAVEALRELLDSGELPEDEALLRAIL 74
Query: 114 QE 115
Sbjct: 75 NA 76
>gnl|CDD|220559 pfam10088, DUF2326, Uncharacterized protein conserved in bacteria
(DUF2326). This domain, found in various hypothetical
bacterial proteins, has no known function.
Length = 140
Score = 27.2 bits (61), Expect = 8.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 88 TFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEY 126
L L+ ++ IQYI+ + D L +D E+
Sbjct: 83 KLLKLINEYAEKRGIQYIVTINKDKLPKDEILDFDEDEH 121
>gnl|CDD|165173 PHA02826, PHA02826, IL-1 receptor-like protein; Provisional.
Length = 227
Score = 28.0 bits (62), Expect = 8.8
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 158 AKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQ 193
+K+ C+ D ++ + ++ LTW K+ + D +Q
Sbjct: 147 SKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ 182
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.384
Gapped
Lambda K H
0.267 0.0877 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,384,868
Number of extensions: 2165077
Number of successful extensions: 2099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2083
Number of HSP's successfully gapped: 41
Length of query: 448
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 348
Effective length of database: 6,502,202
Effective search space: 2262766296
Effective search space used: 2262766296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.0 bits)