RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4828
(448 letters)
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A
{Saccharomyces cerevisiae} SCOP: a.118.1.9
Length = 480
Score = 411 bits (1056), Expect = e-141
Identities = 98/477 (20%), Positives = 193/477 (40%), Gaps = 52/477 (10%)
Query: 22 KTDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNER 81
T ++ ++ + + +R++ W+ +S+ +S+ D ++ K
Sbjct: 5 ATKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSS 64
Query: 82 RGH----------AAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKR 131
+ ++LL + + + LI ++L D+ + K + Q
Sbjct: 65 SNNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVK-FFQEDP 123
Query: 132 EPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDY 191
+ + F L G ++ +++ + + + + L + L+
Sbjct: 124 KQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMD 183
Query: 192 MQSVA-RCLQMMLRIDEYRIAF------------------INVDGIRTLLSVLSGRVNFQ 232
V R LQ + I EYR + +++ S + Q
Sbjct: 184 TCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQ 243
Query: 233 IQYQLIFCLWVLTFNPKLADRMNK--FNVIPTLADILSDSVKEK----------NLIEKP 280
+QY + +W+LTFNP A+ + + + L ++ ++KEK
Sbjct: 244 LQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303
Query: 281 TEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYK 340
+ + ++ L + L +RK+ DE++ +D+ L E L+ Q+L+SFDEY
Sbjct: 304 VKQHKKVIKQLLLLG-NALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV 362
Query: 341 TEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE---------TSRDPLVL 391
E+ S L WSP H FW +N + NY++ + LI LL+ ++ +++
Sbjct: 363 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 422
Query: 392 SVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
VA DI V P V+++ GGK +M+LL+H D V+YEAL A Q ++ + +
Sbjct: 423 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 479
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 67.2 bits (163), Expect = 6e-12
Identities = 84/509 (16%), Positives = 155/509 (30%), Gaps = 170/509 (33%)
Query: 22 KTDMIAATSVLQQQATEVRNQRPN---W---NTYQQSQMISKEDYDFITVFDTASSAKRA 75
KT + A V +V+ + W + + + + D +++
Sbjct: 163 KTWV--ALDVCLSY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 76 EMLNER-RGHAAKTFLN--LLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQ---T 129
N + R H+ + L L ++ +LVL ++ ++ F + T
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENC----LLVL-LNV--QNAKAWNAFNLSCKILLT 271
Query: 130 KREPVCSQFLN--------LLNGSDGFIINMTAKIIAKIACWSVDLL-------NPSDL- 173
R + FL+ L + S + ++ K L NP L
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 174 -------NFYLTWLKDQLKLANNDYMQSV-ARCLQMMLRIDEYRIAFINVDGIRTLLSVL 225
+ TW D K N D + ++ L + L EYR F LSV
Sbjct: 332 IIAESIRDGLATW--DNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDR-------LSVF 381
Query: 226 SGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEK-PTE-- 282
+ I L+ +W F+ +D M +++ K +L+EK P E
Sbjct: 382 PPSAH--IPTILLSLIW---FDVIKSDVM----------VVVNKLHK-YSLVEKQPKEST 425
Query: 283 ---PALAKENCIAMVQSKVLKQLSILEQ----RKFDDEDIVE------------------ 317
P++ E + + L + SI++ + FD +D++
Sbjct: 426 ISIPSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 318 --------------DVQFLNEKLQAS----------VQDLSSFDEYKTEVKSGRLEWSPV 353
D +FL +K++ + L YK
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK------------- 531
Query: 354 HRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIE 413
+ +N P+ L+ +++ L I E + K+
Sbjct: 532 ----PYICDNDPKYER----LVNAILDFLPK-------------IEE---NLICSKY--- 564
Query: 414 QLGGKQLVMQLLSHEDPNVRYEALLAVQK 442
L+ L ED + EA VQ+
Sbjct: 565 ----TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 59.9 bits (144), Expect = 1e-09
Identities = 70/439 (15%), Positives = 135/439 (30%), Gaps = 117/439 (26%)
Query: 53 QMISKEDYDFITVFDTASSAKRA--EMLNERRGHAAKTFLN---------LLEHISKDS- 100
++SKE+ D I + A S L ++ + F+ L+ I +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 101 -----TIQYILVLIDDILQEDRSRVEIFKEYSQTKREPVCS--QFLNLLNGSDGFIIN-M 152
T YI D L D ++F +Y+ ++ +P Q L L + +I+ +
Sbjct: 104 QPSMMTRMYIEQR--DRLYND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 153 --TAK-IIAKIACWSVDLLNPSDLNFYLTWLK--------DQLKLANNDYMQSVARCLQM 201
+ K +A C S + D + WL L++ Q
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 202 MLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVL--TFNPKLADRMNKFNV 259
+ + + I+ L CL VL N K + FN+
Sbjct: 217 SDHSSNIK---LRIHSIQAELR------RLLKSKPYENCLLVLLNVQNAKAWN---AFNL 264
Query: 260 -----IPT----LADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKF 310
+ T + D LS + ++ L + + S+L
Sbjct: 265 SCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPD-----------EVKSLLL---- 308
Query: 311 DDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRS--AQFWRENAPRLH 368
++L+ + QDL EV + +P S A+ R+
Sbjct: 309 ---------KYLDCR----PQDLPR------EVLTT----NPRRLSIIAESIRDGLATWD 345
Query: 369 EKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHC---PRGKHVIEQLGGKQLVMQLL 425
+ L ++E+S + L + + P H+ ++ L+
Sbjct: 346 NWKHVNCDKLTTIIESSLNVL----EPAEYRKMFDRLSVFPPSAHIPTI------LLSLI 395
Query: 426 SHEDPNVRYEALLAVQKLM 444
+ + + ++ V KL
Sbjct: 396 WFDVI--KSDVMVVVNKLH 412
Score = 37.1 bits (85), Expect = 0.013
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 35/151 (23%)
Query: 307 QRKFDDEDIVEDVQ--FLNEKLQASVQD-----LSSFDEYKTEVKSG-------RLEWSP 352
+ ++ +DI+ + F++ VQD LS +E + S RL W+
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSKDAVSGTLRLFWTL 71
Query: 353 VHRSAQFWRENAPRLHEKNYELLKSLIH-----------LLETSRDPLVLSVASYDIGEY 401
+ + + ++ + NY+ L S I + RD L +
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA---- 127
Query: 402 VRHCPRGKHVIEQLGGKQLVMQLLSHEDPNV 432
+ R + +L +Q +++L NV
Sbjct: 128 KYNVSRLQPY-LKL--RQALLELRPA--KNV 153
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 51.9 bits (124), Expect = 1e-07
Identities = 16/77 (20%), Positives = 33/77 (42%)
Query: 371 NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDP 430
L+ L+ LL+ V A + I VR G +L G ++M+ + +
Sbjct: 122 GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 181
Query: 431 NVRYEALLAVQKLMVHN 447
++ ++ +Q L+V +
Sbjct: 182 KLKVKSAFLLQNLLVGH 198
Score = 37.7 bits (87), Expect = 0.005
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
L+ ++ + + +++ + + P K + +G Q ++ L+ E
Sbjct: 169 FSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
Query: 435 EALLAVQKLMVHN 447
L A+ L+
Sbjct: 228 HVLGALCSLVTDF 240
Score = 31.9 bits (72), Expect = 0.32
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG-KQLVMQLLSHEDPN 431
+ + E + D A + + QL G LV + L
Sbjct: 39 QPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 432 VRYEALLAVQKLMVHN 447
+R+ A + +
Sbjct: 98 LRWRAAQLIGTCSQNV 113
Score = 30.4 bits (68), Expect = 0.97
Identities = 7/96 (7%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Query: 180 LKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIF 239
+ + A+ + L + + F + G+ L+ ++++
Sbjct: 45 AGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQ 104
Query: 240 CLWVL-TFNPKLADRMNKFNVIPTLADILSDSVKEK 274
+ + +++ + L +L +
Sbjct: 105 LIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT 140
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 5e-07
Identities = 68/449 (15%), Positives = 151/449 (33%), Gaps = 120/449 (26%)
Query: 52 SQMISKEDYDFITVFDTASSAKRAEMLNER---RGHAAKTFLNLLEHISKDSTIQYILVL 108
++++ + D + + + A ++ +R + + L + + + +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA----LFRAVGEGNAQLV-AIF 160
Query: 109 -----IDDILQEDRSRVEIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACW 163
DD +E R ++++ Y + I +A+ ++++
Sbjct: 161 GGQGNTDDYFEELR---DLYQTY-----HVLVGDL-----------IKFSAETLSELIRT 201
Query: 164 SVDL--LNPSDLNFYLTWLKDQLKLANNDYMQSVAR-C-----LQMMLRIDEYRIAFINV 215
++D + LN L WL++ + DY+ S+ C +Q+ Y + +
Sbjct: 202 TLDAEKVFTQGLNI-LEWLENPSNTPDKDYLLSIPISCPLIGVIQLA----HY-VVTAKL 255
Query: 216 DG-----IRTLLSVLSGRV----------------NFQIQ----YQLIFCLWV-----LT 245
G +R+ L +G +F + ++F ++
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF--FIGVRCYEA 313
Query: 246 FNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSIL 305
+ P + +P IL DS+ +N P+ P L+ + Q +V ++
Sbjct: 314 Y-PNTS--------LP--PSILEDSL--ENNEGVPS-PMLS---ISNLTQEQVQDYVNKT 356
Query: 306 EQRKFDDEDIVEDVQFLNEKLQASV----QDLSSFDEY--KTEVKSG----RLEWS--PV 353
+ + + +N V Q L + K + SG R+ +S +
Sbjct: 357 NSHLPAGKQVE--ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 354 HRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIE 413
S +F +P H LL L+ +S + DI V G +
Sbjct: 415 KFSNRFLPVASP-FHS---HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LR 469
Query: 414 QLGG---KQLVMQLLSHEDPNVRYEALLA 439
L G +++V ++ P V++E
Sbjct: 470 VLSGSISERIVDCIIR--LP-VKWETTTQ 495
Score = 37.0 bits (85), Expect = 0.014
Identities = 55/306 (17%), Positives = 102/306 (33%), Gaps = 81/306 (26%)
Query: 139 LNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL---------KLANN 189
L L +GS + V P+ F + L++Q A +
Sbjct: 9 LTLSHGS----LEHV---------LLV----PTASFFIASQLQEQFNKILPEPTEGFAAD 51
Query: 190 DYMQS----VARCLQMMLR-IDEYRI-AFINVDGIRTLLSVLSGRVNFQIQYQL----IF 239
D + V + L + ++ ++ F V L L+ F+ Y L I
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-----LNLCLT---EFENCY-LEGNDIH 102
Query: 240 CLWVLTFNPKLADRMNK-FNVIPT--LADILSDSVKEKNLIEKPTEPALAKENCIAMVQS 296
L + + K +I A I++ +K + AL + V
Sbjct: 103 AL-AAKLLQENDTTLVKTKELIKNYITARIMAKRP-----FDKKSNSALFRA-----VGE 151
Query: 297 KVLKQLSILEQRKF----DDEDIVEDVQFLNEKLQASVQDL-SSFDEYKTEVKSGRLEWS 351
+ ++I F + +D E+++ L + V DL E +E+ L+
Sbjct: 152 GNAQLVAI-----FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 352 PVHRSA---QFWRENAPRLHEKNYELLKS------LIHLLETSRDPLVLSVASYDIGEYV 402
V W EN +K+Y L S LI +++ + + + + GE +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDY--LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-L 263
Query: 403 RHCPRG 408
R +G
Sbjct: 264 RSYLKG 269
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 48.0 bits (114), Expect = 5e-06
Identities = 36/250 (14%), Positives = 73/250 (29%), Gaps = 23/250 (9%)
Query: 206 DEYRIAFINVDGIRTLLSVL-SGRVNFQIQYQLIFCLWVLTF----NPKLADRMNKFNVI 260
+ ++ V GI L+ + I I L LT + + +
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 354
Query: 261 PTLADIL---SDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE 317
P + +L S K + AL N + + + +L L R
Sbjct: 355 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA-------- 406
Query: 318 DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKS 377
++ Q + ++ V+ + R+ R+ + +
Sbjct: 407 -----HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 461
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
+ LL S + VA+ + E + IE G + +LL + V A
Sbjct: 462 FVQLLY-SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAA 519
Query: 438 LAVQKLMVHN 447
+ ++
Sbjct: 520 AVLFRMSEDK 529
Score = 41.1 bits (96), Expect = 7e-04
Identities = 36/269 (13%), Positives = 84/269 (31%), Gaps = 41/269 (15%)
Query: 180 LKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDG-IRTLLSVLSGRVNFQIQYQLI 238
L L + + A + + + + R A + + ++ + + +
Sbjct: 19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 78
Query: 239 FCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKE--KNLIEKPTEPALAKENC-IAMVQ 295
L L+ + + + K IP L +L V I L +E +A+
Sbjct: 79 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 138
Query: 296 SKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFD-EYKTEVKSGRLEWSPVH 354
+ L+++ L + + + +Q L+ + E K +
Sbjct: 139 AGGLQKMVALLNK--TNVKFLAIT-------TDCLQILAYGNQESKLIIL---------- 179
Query: 355 RSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQ 414
++L++++ T +L S + + + C K I +
Sbjct: 180 ------ASGG----------PQALVNIMRTYTYEKLLWTTSR-VLKVLSVCSSNKPAIVE 222
Query: 415 LGGKQLVMQLLSHEDPNVRYEALLAVQKL 443
GG Q + L+ + L ++ L
Sbjct: 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Score = 28.7 bits (64), Expect = 4.6
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 412 IEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ +LL+ ED V +A + V +L
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE 45
Score = 28.7 bits (64), Expect = 5.1
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLL-SHEDPNVR 433
L+ ++ LL + L++ + + K +I GG Q ++ ++ ++ +
Sbjct: 142 LQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 200
Query: 434 YEALLAVQKLMVHN 447
+ ++ L V +
Sbjct: 201 WTTSRVLKVLSVCS 214
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 45.4 bits (107), Expect = 3e-05
Identities = 52/380 (13%), Positives = 106/380 (27%), Gaps = 57/380 (15%)
Query: 72 AKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKR 131
AKR E L +RR T + + S + ++
Sbjct: 46 AKRDEALAKRRNFIPPTDGADSDEEDESSVSA--------------------DQQFYSQL 85
Query: 132 EPVCSQFLNLLNGSDGFIINMTAKIIAKIAC-WSVDLLNPSDLNFYLTWLKDQLKLANND 190
+ Q LN D +I ++ + L + ++ +
Sbjct: 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 145
Query: 191 YMQ-SVARCLQ-MMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTF-N 247
+Q A L + ++ D + + +L + +++ Q I+ L + +
Sbjct: 146 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDS 204
Query: 248 PKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQ 307
D + + N + + + + + + LS L +
Sbjct: 205 TDYRDYVLQCNAMEPILGLFNSNKPS--------------------LIRTATWTLSNLCR 244
Query: 308 RKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367
K D Q L + + S D + +
Sbjct: 245 GKKPQPDWSVVSQAL----PTLAKLIYSMDTETLVDACWAISYLSDG-------PQEAIQ 293
Query: 368 HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH 427
+ + K L+ LL + LV + A +G V V+ G + LLS
Sbjct: 294 AVIDVRIPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352
Query: 428 EDPNVRYEALLAVQKLMVHN 447
N++ EA + + N
Sbjct: 353 PKENIKKEACWTISNITAGN 372
Score = 31.1 bits (70), Expect = 0.73
Identities = 44/339 (12%), Positives = 107/339 (31%), Gaps = 41/339 (12%)
Query: 138 FLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSVAR 197
F+ LL + + +A S D + + + +++
Sbjct: 178 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237
Query: 198 CLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPK-LADRMNK 256
L + R + + + V L+ L ++ + + + L+ P+ +
Sbjct: 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID 297
Query: 257 FNVIPTLADILSDSVKEKNLIEKPTEPALAK------ENCIAMVQSKVLKQLSILEQRKF 310
+ L ++LS L++ P A+ ++ + VL L +L
Sbjct: 298 VRIPKRLVELLSHE---STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP- 353
Query: 311 DDEDIVEDVQFL-------NEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWREN 363
E+I ++ + N + +V D + ++ + + A + N
Sbjct: 354 -KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK---TKKEACWAISN 409
Query: 364 APRLHEKNYE---------LLKSLIHLLETSRDPLV----------LSVASYDIGEYVRH 404
A + + +K L LLE + + ++ L + D +
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLN 469
Query: 405 CPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443
IE+ GG + + +E+ + +A ++
Sbjct: 470 INENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 45.4 bits (107), Expect = 3e-05
Identities = 64/436 (14%), Positives = 134/436 (30%), Gaps = 66/436 (15%)
Query: 25 MIAATSVLQQQATEVRNQRPNWNTYQQSQMI-SKEDYDFITVFDTASSAKRAEMLNERRG 83
M + +++ + +++ + +QQ + S T + S E +
Sbjct: 1 MATQSDLMELEMAMDPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEDDDV--- 57
Query: 84 HAAKTFLNLLEHISKDSTIQYILVLIDDILQE---DRSRVEIFKEYSQTKREPVCSQFLN 140
L E S Q + ID R R +F E + +QF +
Sbjct: 58 --DNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDS 115
Query: 141 LLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTW----LKDQLKLANNDYMQSVA 196
+ + A+ + V+L+N D T L L + + A
Sbjct: 116 ----AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAA 171
Query: 197 RCLQMMLRIDEYRIAFI-NVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMN 255
+ + + + R A + + + ++ + + + L L+ + + +
Sbjct: 172 VMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231
Query: 256 KFNVIPTLADILSDSVKE--KNLIEKPTEPALAKENC-IAMVQSKVLKQLSILEQRKFDD 312
K IP L ++L V + I L +E +A+ + L+++ L +
Sbjct: 232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--- 288
Query: 313 EDIVEDVQFLNEKLQASVQD-LSSF----DEYKTEVKSGRLEWSPVHRSAQFWRENAPRL 367
N K A D L E K +
Sbjct: 289 ----------NVKFLAITTDCLQILAYGNQESKLIIL----------------ASGG--- 319
Query: 368 HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH 427
++L++++ T +L S + + + C K I + GG Q + L+
Sbjct: 320 -------PQALVNIMRTYTYEKLLWTTSR-VLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371
Query: 428 EDPNVRYEALLAVQKL 443
+ L ++ L
Sbjct: 372 PSQRLVQNCLWTLRNL 387
Score = 43.9 bits (103), Expect = 9e-05
Identities = 38/250 (15%), Positives = 71/250 (28%), Gaps = 23/250 (9%)
Query: 206 DEYRIAFINVDGIRTLLSVL-SGRVNFQIQYQLIFCLWVLTF----NPKLADRMNKFNVI 260
+ ++ V GI L+ + I I L LT + + +
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGL 490
Query: 261 PTLADIL---SDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE 317
P + +L S K + AL N + + + +L L R D
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD----- 545
Query: 318 DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKS 377
+ + + E +H A+ N + N +
Sbjct: 546 ----TQRRTSMGGTQQQFVEGVRMEEIVEAC-TGALHILAR-DIHNRIVIRGLN--TIPL 597
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
+ LL S + VA+ + E + IE G + +LL + V A
Sbjct: 598 FVQLLY-SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655
Query: 438 LAVQKLMVHN 447
+ ++
Sbjct: 656 AVLFRMSEDK 665
Score = 40.0 bits (93), Expect = 0.001
Identities = 39/303 (12%), Positives = 88/303 (29%), Gaps = 73/303 (24%)
Query: 184 LKLANNDYMQSVARCLQMMLRID-EYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLW 242
L N ++ CLQ++ + E ++ + G + L++++ ++ + L
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 243 VLTFNPKLADRMNKFNVIPTLADILSDSVKE---------KNLIEKPT------------ 281
VL+ + + + L L+D + +NL + T
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTL 404
Query: 282 ------------EPALA---------KENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQ 320
A +N + + Q ++ L R D EDI E
Sbjct: 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE--- 461
Query: 321 FLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIH 380
++ L + + + + + L ++
Sbjct: 462 -------PAICALRHLTSRHQDAEMAQNAV-------------------RLHYGLPVVVK 495
Query: 381 LLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAV 440
LL L A+ + + CP + + G ++QLL + + +
Sbjct: 496 LLH-PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554
Query: 441 QKL 443
+
Sbjct: 555 TQQ 557
Score = 29.2 bits (65), Expect = 3.6
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 411 VIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ +LL+ ED V +A + V +L
Sbjct: 145 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE 181
Score = 27.7 bits (61), Expect = 8.9
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH-EDPNVR 433
L+ ++ LL + L++ + + K +I GG Q ++ ++ +
Sbjct: 278 LQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336
Query: 434 YEALLAVQKLMVHN 447
+ ++ L V +
Sbjct: 337 WTTSRVLKVLSVCS 350
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 43.0 bits (102), Expect = 8e-05
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
L +L+ LL +S + +L A + + K +++ G + + QL SHE+ ++
Sbjct: 182 LPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQK 240
Query: 435 EALLAVQKLMVH 446
EA A++KL H
Sbjct: 241 EAQEALEKLQSH 252
Score = 37.3 bits (87), Expect = 0.007
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 368 HEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSH 427
H + L + L S D A+ + + + G ++QLLS
Sbjct: 7 HHHHGSELPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS 65
Query: 428 EDPNVRYEALLAVQKLMVHN 447
+ + EAL A+ +
Sbjct: 66 PNEQILQEALWALSNIASGG 85
Score = 31.1 bits (71), Expect = 0.56
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVR 433
L +L+ LL S + +L A + + + G ++QLLS + +
Sbjct: 139 ALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 197
Query: 434 YEALLAVQKLMVHN 447
EAL A+ +
Sbjct: 198 QEALWALSNIASGG 211
Score = 27.6 bits (62), Expect = 8.2
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 407 RGKHVIEQLGGK--QLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
RG H G + Q+ Q L+ +D + A +++
Sbjct: 2 RGSHHHHHHGSELPQMT-QQLNSDDMQEQLSATRKFSQILSDG 43
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 43.6 bits (103), Expect = 1e-04
Identities = 41/246 (16%), Positives = 73/246 (29%), Gaps = 23/246 (9%)
Query: 206 DEYRIAFINVDGIRTLLSVL-SGRVNFQIQYQLIFCLWVLTFNPKLADR----MNKFNVI 260
+ ++ V GI L+ + I I L LT + A+ + +
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGL 357
Query: 261 PTLADIL---SDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE 317
P + +L S K + AL N + + + +L L R D
Sbjct: 358 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT---- 413
Query: 318 DVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKS 377
Q E+ G +H A+ N + N +
Sbjct: 414 ----QRRTSMGGTQQQFVEGVRMEEIVEGCT--GALHILAR-DVHNRIVIRGLN--TIPL 464
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
+ LL S + VA+ + E + IE G + +LL + V A
Sbjct: 465 FVQLLY-SPIENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
Query: 438 LAVQKL 443
+ ++
Sbjct: 523 AVLFRM 528
Score = 40.9 bits (96), Expect = 6e-04
Identities = 42/296 (14%), Positives = 85/296 (28%), Gaps = 54/296 (18%)
Query: 183 QLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDG-IRTLLSVLSGRVNFQIQYQLIFCL 241
L + + A + + + + R A + + ++ + + + L
Sbjct: 25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 84
Query: 242 WVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQ 301
L+ + + + K IP L +L V I L
Sbjct: 85 HNLSHHREGLLAIFKSGGIPALVKMLGSPVDS------------VLFYAIT-----TLHN 127
Query: 302 LSILE---QRKFDDEDIVED-VQFL---NEKLQASVQD-LSSF----DEYKTEV-KSG-- 346
L + + + ++ V L N K A D L E K + SG
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 347 ----RLEWSPVHRSAQ-----------FWRENAPRLHEKNYELLKSLIHLLETSRDPLVL 391
+ + + N P + E +++L L ++
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG--GMQALGLHLT-DPSQRLV 244
Query: 392 SVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ + + + +E G ++QLL +D NV A + L +N
Sbjct: 245 QNCLWTLR-NLSDAATKQEGME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297
Score = 30.5 bits (69), Expect = 1.3
Identities = 30/258 (11%), Positives = 75/258 (29%), Gaps = 61/258 (23%)
Query: 205 IDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVL-TFNPKLADRMNKFNVIPTL 263
I+ A + I L +L+ + + + + L M ++ +
Sbjct: 6 INYQDDAELATRAIPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 64
Query: 264 ADILSDSVKEKNLIEKPTEPALA-----KENCIAMVQSKVLKQLSILEQRKFDDEDIVED 318
+ ++ + T L +E +A+ +S + L
Sbjct: 65 VRTMQNT--NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPAL---------------- 106
Query: 319 VQFL---NEKLQASV----QDLSSFDE-YKTEVKSGRLEWSPVHRSAQFWRENAPRLHEK 370
V+ L + + +L E K V+
Sbjct: 107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR----------------LAGG------ 144
Query: 371 NYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLL-SHED 429
L+ ++ LL + L++ + + K +I GG Q ++ ++ ++
Sbjct: 145 ----LQKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199
Query: 430 PNVRYEALLAVQKLMVHN 447
+ + ++ L V +
Sbjct: 200 EKLLWTTSRVLKVLSVCS 217
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 41.2 bits (96), Expect = 5e-04
Identities = 38/274 (13%), Positives = 87/274 (31%), Gaps = 33/274 (12%)
Query: 180 LKDQLKLANNDYMQSVARCLQMMLRI-----DEYRIAFINVDGIRTLLSVLSGRVNFQIQ 234
++D +K N++ ++S + Q ++ I I +S L IQ
Sbjct: 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 118
Query: 235 YQLIFCLWVLT-FNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAM 293
++ + L + + + IP +L+ E +
Sbjct: 119 FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAH------------ISEQAVW- 165
Query: 294 VQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPV 353
L ++ D D+ + + + L+ D R +
Sbjct: 166 ----ALGNIAG-------DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214
Query: 354 HRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIE 413
+ +N + ++L +L+ LL DP VL+ + + I ++
Sbjct: 215 SNLCR--NKNPAPPLDAVEQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVV 271
Query: 414 QLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ G +++LL + + AL A+ ++
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305
Score = 36.1 bits (83), Expect = 0.021
Identities = 59/414 (14%), Positives = 127/414 (30%), Gaps = 59/414 (14%)
Query: 80 ERRGHAAKTFLNLLEHISKDSTIQYIL------VLIDDILQEDRSRV---------EIFK 124
E + A + LL K I I+ + + + D S + I
Sbjct: 72 ESQLQATQAARKLLSR-EKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 130
Query: 125 EYSQTKREPVCSQ----FLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWL 180
S+ + V F++LL I + IA + + + L
Sbjct: 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190
Query: 181 KDQLKLANND-----YMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQY 235
L + + Y++++ L + R V+ I L L + ++
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250
Query: 236 QLIFCLWVLTFNPK-LADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAK------E 288
+ + LT P + + K V+P L +L + + I P A+ E
Sbjct: 251 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPALRAIGNIVTGTDE 307
Query: 289 NCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFL-------NEKLQASVQDLSSFDEYKT 341
++ + L L +I ++ + + V +
Sbjct: 308 QTQKVIDAGALAVFPSL--LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365
Query: 342 EVKSGRLEWSPVHRSAQFWRENAPRLHEK-------NYELLKSLIHLLETSRDPLVLSVA 394
+ + + A + N + +++ L++LL ++ +
Sbjct: 366 VLSKADFK---TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422
Query: 395 S-----YDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443
+ E + + +IE+ GG + L HE+ +V +L ++K
Sbjct: 423 DAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVR 433
L +L+ LL S + +L A + + K +++ G + + QL SHE+ ++
Sbjct: 139 ALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQ 197
Query: 434 YEALLAVQKLMVH 446
EA A++KL H
Sbjct: 198 KEAQEALEKLQSH 210
Score = 38.0 bits (89), Expect = 0.003
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
L ++ L S D L A + + + G ++QLLS + +
Sbjct: 14 LPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 435 EALLAVQKLMVHN 447
EAL A+ +
Sbjct: 73 EALWALSNIASGG 85
Score = 32.6 bits (75), Expect = 0.15
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVR 433
L +L+ LL +S + +L A + + + G ++QLLS + +
Sbjct: 97 ALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155
Query: 434 YEALLAVQKLMVHN 447
EAL A+ +
Sbjct: 156 QEALWALSNIASGG 169
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 40.6 bits (95), Expect = 7e-04
Identities = 39/307 (12%), Positives = 92/307 (29%), Gaps = 46/307 (14%)
Query: 180 LKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV---------- 229
K+ + + L + +E+R A + G++ + +L
Sbjct: 37 DKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 96
Query: 230 NFQIQYQLIFCLWVLTFN--PKLADRMNKFNVIPTLADIL---SDSVKEK------NLIE 278
+ ++ L LTF A + + L L S+ +++ NL
Sbjct: 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 156
Query: 279 KPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDV----------------QFL 322
+ + + + +K L + E ++ V
Sbjct: 157 RADV-----NSKKTLREVGSVKALMECA-LEVKKESTLKSVLSALWNLSAHCTENKADIC 210
Query: 323 NEK--LQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIH 380
L V L+ + T + S+ R + L++L+
Sbjct: 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 270
Query: 381 LLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAV 440
L+ S ++S A + P+ + + +G ++ L+ + + + A+
Sbjct: 271 HLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329
Query: 441 QKLMVHN 447
+ LM +
Sbjct: 330 RNLMANR 336
Score = 34.1 bits (78), Expect = 0.096
Identities = 34/248 (13%), Positives = 76/248 (30%), Gaps = 22/248 (8%)
Query: 195 VARCLQMMLRIDEYRIAFINVD--GIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLAD 252
+ L+ + E + G+ + + + L L+F+ +
Sbjct: 9 MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAP-VEHQICPAVCVLMKLSFDEEHRH 67
Query: 253 RMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDD 312
MN+ + +A++L + L L + +A L L+ F D
Sbjct: 68 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA------LTNLT------FGD 115
Query: 313 EDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNY 372
+ + ++A V L S E +V + L R+ + + + +
Sbjct: 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL------RNLSWRADVNSKKTLREV 169
Query: 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVI-EQLGGKQLVMQLLSHEDPN 431
+K+L+ + L + HC K I G ++ L++
Sbjct: 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229
Query: 432 VRYEALLA 439
+ +
Sbjct: 230 NTLAIIES 237
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 40.6 bits (94), Expect = 0.001
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
+ + L S+D ++ +Y I K + QLGG ++ LL + NV+
Sbjct: 4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 435 EALLAVQKLMVHN 447
A A++ L+ +
Sbjct: 63 AAAGALRNLVFRS 75
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 40.0 bits (93), Expect = 0.001
Identities = 53/387 (13%), Positives = 118/387 (30%), Gaps = 46/387 (11%)
Query: 82 RGHAAKTFLNLLEHISKDSTIQYILVLIDDIL-QEDRSRVEIFKEY--------SQTKRE 132
R ++ K + + + T +L + D + ED + + ++
Sbjct: 27 RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVH 86
Query: 133 PVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYM 192
+ +L + + + + + I+ +PSDL + L +LA D+
Sbjct: 87 CLLPPLESLATVEETVVRDKAVESLRAIS----HEHSPSDLEAHFVPL--VKRLAGGDWF 140
Query: 193 QSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLAD 252
S + + + + +R L ++ L + A
Sbjct: 141 TSRTSACGLFSVCYPRVSSAVKAE-LRQYFRNLCSDDTPMVRRAAASKL------GEFAK 193
Query: 253 RMNKFNV----IPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQR 308
+ NV IP +++ SD L+ +A+ +++ V+ L
Sbjct: 194 VLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA-- 251
Query: 309 KFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEV----------KSGRLEWSPVHRSAQ 358
ED V+++ +Q + KT++ + + H+ +
Sbjct: 252 ----EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307
Query: 359 FWRENAPRLHEKNY-ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG 417
F + E + I L + + V S + I + + L
Sbjct: 308 FCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL-- 365
Query: 418 KQLVMQLLSHEDPNVRYEALLAVQKLM 444
L + L E P VR + + +
Sbjct: 366 -PLFLAQLKDECPEVRLNIISNLDCVN 391
Score = 32.3 bits (73), Expect = 0.38
Identities = 48/384 (12%), Positives = 114/384 (29%), Gaps = 38/384 (9%)
Query: 82 RGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRV---------EIFKEYSQTKRE 132
R AA + + D+ I+ + ++ +++ V I + Q E
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLE 240
Query: 133 P-VCSQFLNLLNGSDGFIINMTAKIIAKIA-CWSVDLLNPSDLNFYLTWLKDQLKLANND 190
V + M A ++ ++ + + +KD
Sbjct: 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAA 300
Query: 191 YMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKL 250
V + + + + I + L N ++ L + + +P L
Sbjct: 301 ASHKVKEFCEN---LSADCRENVIMSQILPCIKELVSDANQHVKSALASVI--MGLSPIL 355
Query: 251 ADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKF 310
+++P L D E ++ +C+ V S+L
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEV------RLNIISNLDCVNEVIGIRQLSQSLLPAIVE 409
Query: 311 DDEDIVEDVQF-LNEKLQASVQDLSS--FDEYKTEVKSGRLE---WSPVHRSAQFWRENA 364
ED V+ + E + L FDE + L ++ + ++
Sbjct: 410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLV 469
Query: 365 PRLHEKN-YELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG---KHVIEQLGGKQL 420
+ ++ + + + + + L + I C + KH++ +
Sbjct: 470 EKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTV----- 524
Query: 421 VMQLLSHEDPNVRYEALLAVQKLM 444
+++ NVR+ ++QK+
Sbjct: 525 -LRMAGDPVANVRFNVAKSLQKIG 547
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVR 433
+ + L+ LL D V+S A +G V VI Q ++ LLS +++
Sbjct: 235 VCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIK 293
Query: 434 YEALLAVQKLMVHN 447
EA + + N
Sbjct: 294 KEACWTISNITAGN 307
Score = 36.0 bits (83), Expect = 0.022
Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
Query: 362 ENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLV 421
++ P K L L LL D VL+ A + + + G + +
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLF-VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239
Query: 422 MQLLSHEDPNVRYEALLAVQKLMVHN 447
++LL H D V AL AV ++ +
Sbjct: 240 VELLMHNDYKVVSPALRAVGNIVTGD 265
Score = 31.4 bits (71), Expect = 0.71
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
L L+ L + A + + R + ++ LL D +V
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210
Query: 435 EALLAVQKLMVHN 447
+A A+ L
Sbjct: 211 DACWALSYLSDGP 223
Score = 29.5 bits (66), Expect = 2.3
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 4/77 (5%)
Query: 374 LLKSLIHLLETSRDPLVLSVASYDIGEYVRH--CPRGKHVIEQLGG-KQLVMQLLSHEDP 430
+ +I ++ S+ P A+ + + P VI G + V L E+
Sbjct: 21 ITSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENC 79
Query: 431 NVRYEALLAVQKLMVHN 447
+++E+ + + N
Sbjct: 80 TLQFESAWVLTNIASGN 96
Score = 28.3 bits (63), Expect = 5.4
Identities = 46/330 (13%), Positives = 102/330 (30%), Gaps = 53/330 (16%)
Query: 130 KREPVCSQFLNLL-NGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLAN 188
V ++F+ L + + +A ++ IA + + + L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 189 NDYMQSVARCL-QMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVL-TF 246
D + L + R ++ + + LL + S + + ++ L L
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 247 NPKLADRMNKFNVIPTLADILSDSVKEK---------NLIEKPTEPALAKENCIAMVQSK 297
+ + L+ +L S + L + P + A++ +
Sbjct: 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP------NDKIQAVIDAG 234
Query: 298 VLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHRSA 357
V ++L L +D +V L+A V ++ + D+ +T+V
Sbjct: 235 VCRRLVELLMH--NDYKVVSPA------LRA-VGNIVTGDDIQTQV-------------- 271
Query: 358 QFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGG 417
N L+SL+HLL + ++ + A + I +
Sbjct: 272 -----------ILNCSALQSLLHLLSSPKESIKKE-ACWTISNITAGNRAQIQTVIDANI 319
Query: 418 KQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
++ +L + R EA A+
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGG 349
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 39.4 bits (91), Expect = 0.002
Identities = 39/303 (12%), Positives = 99/303 (32%), Gaps = 30/303 (9%)
Query: 167 LLNPSDLNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLS 226
+N + L + ++LA + RI + +GI T L L+
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504
Query: 227 GRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALA 286
+ Q + L + +L ++ + + L + + ++ ++ ALA
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEK---GKRHATQALA 561
Query: 287 K-----ENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKT 341
+ ++ + L + L D +E+ E L A S + +
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF----ESLMALTNLASMNESVRQ 617
Query: 342 EVKSGRLEW----------SPVHRSAQ------FWRENAPRLHEKNYELLKSLIHLLETS 385
+ + + R+A E+ ++ E N + +K L L E
Sbjct: 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE-D 676
Query: 386 RDPLVLSVASYDIGEYVRHCPR-GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLM 444
D + + + + + ++ ++ L+++ P V++ ++ + ++
Sbjct: 677 EDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736
Query: 445 VHN 447
Sbjct: 737 NAG 739
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 38.8 bits (90), Expect = 0.003
Identities = 38/305 (12%), Positives = 91/305 (29%), Gaps = 46/305 (15%)
Query: 182 DQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRV----------NF 231
+ + + L + +E+R A + G++ + +L +
Sbjct: 155 NPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 214
Query: 232 QIQYQLIFCLWVLTFN--PKLADRMNKFNVIPTLADIL---SDSVKEK------NLIEKP 280
++ L LTF A + + L L S+ +++ NL +
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274
Query: 281 TEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDV----------------QFLNE 324
+ + + +K L + E ++ V
Sbjct: 275 DV-----NSKKTLREVGSVKALMEC-ALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328
Query: 325 K--LQASVQDLSSFDEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLL 382
L V L+ + T + S+ R + L++L+ L
Sbjct: 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388
Query: 383 ETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQK 442
+ S ++S A + P+ + + +G ++ L+ + + + A++
Sbjct: 389 K-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447
Query: 443 LMVHN 447
LM +
Sbjct: 448 LMANR 452
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 37.2 bits (85), Expect = 0.010
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 8/109 (7%)
Query: 342 EVKSGRLEWSPV--HRSAQFW-----RENAPRLHEKNYELLKSLIHLLETSRDPLVLSVA 394
EV S + W+P+ H R+ P L +I +L R V S A
Sbjct: 10 EVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLG-FRLDAVKSNA 68
Query: 395 SYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443
+ + + K + +L G +++ LL H V A A++ +
Sbjct: 69 AAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.24
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 15/34 (44%)
Query: 273 EKNLIEK---------P-TEPALAKENCI-AMVQ 295
EK ++K + PALA I A ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA----IKATME 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 30.5 bits (69), Expect = 1.0
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 7/68 (10%)
Query: 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRG-KHVIEQLGGKQLVMQLLSHEDPN 431
+ L ++ + V + A + + P ++EQ + N
Sbjct: 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQS------QITAFDKSTN 143
Query: 432 VRYEALLA 439
VR A
Sbjct: 144 VRRATAFA 151
Score = 29.8 bits (67), Expect = 1.9
Identities = 8/66 (12%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
I ++ + + ++ +G+ + E L L+ + VR A+
Sbjct: 59 AIEFCS-DKNYIRRDIGAFILGQI-----KICKKCEDNVFNILNNMALNDKSACVRATAI 112
Query: 438 LAVQKL 443
+ +
Sbjct: 113 ESTAQR 118
Score = 28.6 bits (64), Expect = 3.9
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
+ LI+LL+ + V + A++ I + + +++L ++ VR
Sbjct: 161 IPLLINLLK-DPNGDVRNWAAFAININKYDNSD---IRDCF------VEMLQDKNEEVRI 210
Query: 435 EALLAVQKL 443
EA++ +
Sbjct: 211 EAIIGLSYR 219
Score = 27.5 bits (61), Expect = 8.7
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 387 DPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKL 443
+ AS + G Y K ++L +LL + R + +Q
Sbjct: 3 NTYQKRKASKEYGLYN---QCKKLNDDEL------FRLLDDHNSLKRISSARVLQLR 50
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 30.3 bits (67), Expect = 1.4
Identities = 42/362 (11%), Positives = 106/362 (29%), Gaps = 41/362 (11%)
Query: 10 NMKEMIPNLPDDKTDMIAATSVL-QQQATEVRNQRPNWNTYQQSQMISKEDYDFITVF-D 67
+ + +P K +A + +QQ ++ ++ Y + +
Sbjct: 286 HHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH------------FERQGYSVQGISGE 333
Query: 68 TASSAKRAEMLNERRG--HAAKTFLNLLEHISKDSTIQYILVLIDDI--LQEDRSRVEIF 123
S+ +++ + + +N E + S + L++ D+ + +
Sbjct: 334 NFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLM 393
Query: 124 KEYSQTKREPVCSQFL------NLLNGSDGFIINMTAKI-----IAKIACWSVDLLNPSD 172
Y + K ++ G+ I I I S N +
Sbjct: 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQE 453
Query: 173 LNFYLTWLKDQLKLANNDYMQSVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQ 232
L ++ + ++L A + ++ E + I + S Q
Sbjct: 454 LQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS--KKDFGTQ 511
Query: 233 IQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVK---------EKNLIEKPTEP 283
I +L D+ + + L K + +I+ +
Sbjct: 512 NYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYL 571
Query: 284 ALAKENCIAMVQSKVLKQL-SILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTE 342
N +++ + L + ++++ + + +D N KL+ V L Y +
Sbjct: 572 TEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 631
Query: 343 VK 344
+
Sbjct: 632 TR 633
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 28.8 bits (65), Expect = 1.8
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
L+ L + D + A++ IG + + + +E L ++LL + VR A
Sbjct: 47 LLESLS-NEDWRIRGAAAWIIGNF-----QDERAVEPL------IKLLEDDSGFVRSGAA 94
Query: 438 LA 439
+
Sbjct: 95 RS 96
Score = 26.5 bits (59), Expect = 9.7
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 422 MQLLSHEDPNVRYEALLAVQKL 443
++ E+ VR + A+ ++
Sbjct: 18 GSHMADENKWVRRDVSTALSRM 39
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 29.8 bits (66), Expect = 2.3
Identities = 48/399 (12%), Positives = 122/399 (30%), Gaps = 59/399 (14%)
Query: 73 KRAE-MLNERRGHAAKTFLNLLEHISKDSTI-----QYILVLI------DDILQEDRSRV 120
+E L + F L + D + + D ++ +
Sbjct: 23 LTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQ 82
Query: 121 EIFKEYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWL 180
+ S + + + L L + I N A++IA IA + +L + +
Sbjct: 83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPEL---MKIM 139
Query: 181 KDQLKLANNDYMQSVA-RCLQMML----RIDEYRIAFINVDGIRTLLSVLSGRVNFQIQY 235
D + ++ + L M + ++ N I + S + ++
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199
Query: 236 QLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQ 295
+ L + + M + L ++ ++ + ++ + + +
Sbjct: 200 AALNAL--ADSLIFIKNNMEREGERNYLMQVVCEATQAED-------IEVQAAAFGCLCK 250
Query: 296 -------------SKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTE 342
+ L L+I + +D+ V+F S+ E + +
Sbjct: 251 IMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEF-----------WSTICEEEID 299
Query: 343 VKSGRLEWSP-VHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEY 401
+ ++ +S F + + LL E +S+++ +
Sbjct: 300 IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWN--VSMSAGACLQL 357
Query: 402 VRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAV 440
G H++E + + V Q ++ ++ R A++A
Sbjct: 358 FAQNC-GNHILEPVL--EFVEQNITADNWRNREAAVMAF 393
>2y0f_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase,
isoprenoid biosynthesis, non-mevalonate PATH; 2.50A
{Thermus thermophilus}
Length = 406
Score = 29.2 bits (66), Expect = 2.9
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 9/52 (17%)
Query: 273 EKNLIEK-------PTEPALAKENCI-AMVQSKVLKQLSILEQRKFDDEDIV 316
+ L+ + EP A E + A+V+S ++ + ++ +V
Sbjct: 150 DPALLTELMDRNASRPEPKSAHEVVLEALVES-AVRAYEAALEMGLGEDKLV 200
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 28.8 bits (65), Expect = 3.1
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
++ LI L+ D V A+ +G+ + +E L ++ L ED VR
Sbjct: 78 VEPLIKALK-DEDGWVRQSAAVALGQI-----GDERAVEPL------IKALKDEDWFVRI 125
Query: 435 EALLA 439
A A
Sbjct: 126 AAAFA 130
Score = 28.0 bits (63), Expect = 4.3
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
++ LI L+ D V A+ +G+ + +E L ++ L ED VR
Sbjct: 47 VEPLIKALK-DEDAWVRRAAADALGQI-----GDERAVEPL------IKALKDEDGWVRQ 94
Query: 435 EALLAVQKL 443
A +A+ ++
Sbjct: 95 SAAVALGQI 103
Score = 28.0 bits (63), Expect = 5.3
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 414 QLGGKQLV---MQLLSHEDPNVRYEALLAVQKL 443
++G ++ V ++ L ED VR A A+ ++
Sbjct: 133 EIGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 27.7 bits (62), Expect = 6.9
Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 383 ETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGK---QLVMQLLSHEDPNVRYEALLA 439
E + +PL+ ++ D +VR + ++GG+ + +L R A+
Sbjct: 137 ERAVEPLIKALKDED--GWVRQ--SAADALGEIGGERVRAAMEKLAETGTGFARKVAVNY 192
Query: 440 VQKL 443
++
Sbjct: 193 LETH 196
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 28.5 bits (64), Expect = 3.1
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 12/62 (19%)
Query: 378 LIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEAL 437
LI L+ D V A+ +G+ + +E L ++ L ED VR A
Sbjct: 86 LIKALK-DEDGWVRQSAAVALGQI-----GDERAVEPL------IKALKDEDWFVRIAAA 133
Query: 438 LA 439
A
Sbjct: 134 FA 135
Score = 28.5 bits (64), Expect = 3.4
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 414 QLGGKQLV---MQLLSHEDPNVRYEALLAVQKL 443
++G ++ V ++ L ED VR A A+ ++
Sbjct: 138 EIGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 27.7 bits (62), Expect = 5.7
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
++ LI L+ D V A+ +G+ + +E L ++ L ED VR
Sbjct: 52 VEPLIKALK-DEDAWVRRAAADALGQI-----GDERAVEPL------IKALKDEDGWVRQ 99
Query: 435 EALLAVQKL 443
A +A+ ++
Sbjct: 100 SAAVALGQI 108
Score = 27.7 bits (62), Expect = 7.3
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 383 ETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQ---LVMQLLSHEDPNVRYEALLA 439
E + +PL+ ++ D +VR + ++GG++ + +L R A+
Sbjct: 142 ERAVEPLIKALKDED--GWVRQ--SAADALGEIGGERVRAAMEKLAETGTGFARKVAVNY 197
Query: 440 VQKL 443
++
Sbjct: 198 LETH 201
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 28.9 bits (64), Expect = 3.5
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNV 432
+++ + +L S++ A I + K+V L ++ LL D V
Sbjct: 144 SIVRDFMSMLS-SKNREDKLTALNFIEAMGENSF--KYVNPFL---PRIINLLHDGDEIV 197
Query: 433 RYEALLAVQKLMVHN 447
R A+ A+ L N
Sbjct: 198 RASAVEALVHLATLN 212
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 28.6 bits (64), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 421 VMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ + L EDP VR A + V KL N
Sbjct: 126 LRKCLKDEDPYVRKTAAVCVAKLHDIN 152
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP
replication, DNA-binding, hydrolase, nucleotide-B SOS
response; HET: DNA; 1.80A {Escherichia coli} PDB:
2is6_A* 2is2_A* 2is1_A* 2is4_A*
Length = 647
Score = 28.2 bits (64), Expect = 7.0
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 14/73 (19%)
Query: 63 ITVFDTASSAKRAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQ-------- 114
+T++ + + L R A + F+ L++ +++++ + V D +++
Sbjct: 435 LTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMY 494
Query: 115 ------EDRSRVE 121
+ ++R+E
Sbjct: 495 EQEKGEKGQTRIE 507
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 7.6
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 26 IAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAKRAEMLNERRGHA 85
IA L Q+ +R R +Q + + + D AS E + +
Sbjct: 74 IAQADRLTQEPESIRKWRE-----EQRKRLQELD--------AASKVMEQEWREKAKKDL 120
Query: 86 AKTFLNLLEHISK 98
+ E + K
Sbjct: 121 EEWNQRQSEQVEK 133
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 27.7 bits (61), Expect = 8.4
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 419 QLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
+ + Q + + P+V AL++ L+ +
Sbjct: 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCS 170
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive
structure, iron sulfur proteins, nitrogen fixation;
2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Length = 244
Score = 27.5 bits (61), Expect = 9.0
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 390 VLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEA 436
L + + D VR + V +L +++LL D VR A
Sbjct: 174 SLGLMTQDPEPEVR-----RIVASRLR-GDDLLELLHDPDWTVRLAA 214
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 27.2 bits (60), Expect = 9.7
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 180 LKDQLKLANNDYMQSVARCLQMM-LRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLI 238
L LK+ N D ++V L+ + ++ ++ ++G+ LL VL + + + Q+
Sbjct: 57 LLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQIT 116
Query: 239 FCLWVLTFNP 248
LW L+ N
Sbjct: 117 GLLWNLSSND 126
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.384
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,575,451
Number of extensions: 383756
Number of successful extensions: 938
Number of sequences better than 10.0: 1
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 104
Length of query: 448
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 351
Effective length of database: 3,993,456
Effective search space: 1401703056
Effective search space used: 1401703056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.1 bits)