RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4828
(448 letters)
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 477
Score = 425 bits (1093), Expect = e-147
Identities = 100/476 (21%), Positives = 194/476 (40%), Gaps = 52/476 (10%)
Query: 23 TDMIAATSVLQQQATEVRNQRPNWNTYQQSQMISKEDYDFITVFDTASSAK--------- 73
T ++ ++ + + +R++ W+ +S+ +S+ D ++ K
Sbjct: 3 TKILMDSTHFNEIRSIIRSRSVAWDALARSEELSEIDASTAKALESILVKKNIGDGLSSS 62
Query: 74 -RAEMLNERRGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRVEIFKEYSQTKRE 132
A + G ++LL + + + LI ++L D+ + ++ Q +
Sbjct: 63 NNAHSGFKVNGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYG-DDTVKFFQEDPK 121
Query: 133 PVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL-KLANNDY 191
+ F L G ++ +++ + + + + L + L + D
Sbjct: 122 QLEQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDT 181
Query: 192 MQSVARCLQMMLRIDEYRIAFIN------------------VDGIRTLLSVLSGRVNFQI 233
R LQ + I EYR +++ S + Q+
Sbjct: 182 CYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQL 241
Query: 234 QYQLIFCLWVLTFNPKLADRMNK--FNVIPTLADILSDSVKEK----------NLIEKPT 281
QY + +W+LTFNP A+ + + + L ++ ++KEK
Sbjct: 242 QYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRV 301
Query: 282 EPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKT 341
+ K ++ L + L +RK+ DE++ +D+ L E L+ Q+L+SFDEY
Sbjct: 302 KQH-KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA 360
Query: 342 EVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLE---------TSRDPLVLS 392
E+ S L WSP H FW +N + NY++ + LI LL+ ++ +++
Sbjct: 361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQ 420
Query: 393 VASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHNW 448
VA DI V P V+++ GGK +M+LL+H D V+YEAL A Q ++ + +
Sbjct: 421 VALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYTF 476
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 47.8 bits (113), Expect = 2e-06
Identities = 47/400 (11%), Positives = 118/400 (29%), Gaps = 41/400 (10%)
Query: 82 RGHAAKTFLNLLEHISKDSTIQYILVLIDDILQEDRSRV------EIFKEYSQTKREPVC 135
R A +T + + + + + D R + +
Sbjct: 100 RALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFL 159
Query: 136 SQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQSV 195
+L+ S+ ++ +++I+ + + L L +
Sbjct: 160 DSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFI 219
Query: 196 ARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMN 255
CL D+ I + + LS + V L+ L +L + + +
Sbjct: 220 LDCLSNYNPKDDREAQSI-CERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL 278
Query: 256 KFNVIPTLADILSDSV--------------KEKNLIEKPTEPALAKENCIAMVQSKVLKQ 301
K P + + + K ++++ + K N V+ + L
Sbjct: 279 KKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDI 338
Query: 302 LSILEQRKFDDEDIVEDVQFLNEK----LQASVQDLSSFDEYKTEVKSGRLEW------- 350
+ L + + + E ++ E ++ +V+ + + +
Sbjct: 339 MIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT 398
Query: 351 ---SPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR 407
V + R+ + K ++ +L L++ +P + + +GEY
Sbjct: 399 KVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN 458
Query: 408 GKHVIEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVHN 447
++E ++ E V+ L A+ KL +
Sbjct: 459 ADELLESF------LEGFHDESTQVQLTLLTAIVKLFLKK 492
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 41.0 bits (94), Expect = 2e-04
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
+ + L S+D ++ +Y I K + QLGG ++ LL + NV+
Sbjct: 4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 435 EALLAVQKLMVHN 447
A A++ L+ +
Sbjct: 63 AAAGALRNLVFRS 75
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 31.7 bits (71), Expect = 0.21
Identities = 31/232 (13%), Positives = 80/232 (34%), Gaps = 11/232 (4%)
Query: 218 IRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLI 277
+ + +V S R + I ++ + + + + + L D V +
Sbjct: 124 LHCIANVGS-REMAEAFAGEIP-KILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 181
Query: 278 EKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDEDIVE-DVQFLNEKLQASVQDLSSF 336
+ L + + +V + ++ ++ + + V V L+ + ++ DL +
Sbjct: 182 SRVVH--LLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDY 239
Query: 337 DEYKTEVKSGRLEWSPVHRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASY 396
Y V + L + + P + + E L+++++ + + ++
Sbjct: 240 TYYF--VPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNA 297
Query: 397 D---IGEYVRHCPRGKHVIEQLG-GKQLVMQLLSHEDPNVRYEALLAVQKLM 444
+ E + L + Q L H + N+RY AL ++ L
Sbjct: 298 KNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA 349
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 30.5 bits (67), Expect = 0.48
Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
Query: 371 NYELLKSLIHLLETSRDPLVLSVAS-----YDIGEYVRHCPRGKHVIEQLGGKQLVMQLL 425
+ +++ L++LL ++ + + E + + +IE+ GG + L
Sbjct: 355 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 414
Query: 426 SHEDPNVRYEALLAVQK 442
HE+ +V +L ++K
Sbjct: 415 RHENESVYKASLNLIEK 431
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 29.4 bits (64), Expect = 0.95
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 373 ELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNV 432
ELL L + + VL + +G + ++V L + L + E+ V
Sbjct: 49 ELLPFLTDTIYDEDE--VLLALAEQLGTFTTLVGGPEYVHCLL---PPLESLATVEETVV 103
Query: 433 RYEALLAVQKLM 444
R +A+ +++ +
Sbjct: 104 RDKAVESLRAIS 115
Score = 26.3 bits (56), Expect = 9.7
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 373 ELLKSLIHLLETSRDPLVLSVAS--YDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDP 430
+L +++ + + +VA IG + + V K ++ +L +D
Sbjct: 519 HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEV------KPILEKLTQDQDV 572
Query: 431 NVRYEALLAVQKL 443
+V+Y A A+ L
Sbjct: 573 DVKYFAQEALTVL 585
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 264
Score = 29.2 bits (64), Expect = 1.0
Identities = 9/73 (12%), Positives = 20/73 (27%)
Query: 375 LKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHVIEQLGGKQLVMQLLSHEDPNVRY 434
+ E + D A + + + + G LV + L +R+
Sbjct: 18 MPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRW 77
Query: 435 EALLAVQKLMVHN 447
A + +
Sbjct: 78 RAAQLIGTCSQNV 90
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 28.1 bits (61), Expect = 2.5
Identities = 35/335 (10%), Positives = 90/335 (26%), Gaps = 27/335 (8%)
Query: 134 VCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQLKLANNDYMQ 193
F+ LL + + +A S D + + + ++
Sbjct: 163 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIR 222
Query: 194 SVARCLQMMLRIDEYRIAFINVDGIRTLLSVLSGRVNFQIQYQLIFCLWVLTFNPKLADR 253
+ L + R + + + V L+ L ++ + + + L+ P+ A +
Sbjct: 223 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ 282
Query: 254 MNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKVLKQLSILEQRKFDDE 313
IP L Q + + +
Sbjct: 283 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 342
Query: 314 D---IVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPVHR------------SAQ 358
E ++ + + + + + +L ++ S+
Sbjct: 343 KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 402
Query: 359 FWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPRGKHV------- 411
+ + + +K L LLE D ++ V + ++ K
Sbjct: 403 GLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINE 461
Query: 412 ----IEQLGGKQLVMQLLSHEDPNVRYEALLAVQK 442
IE+ GG + + +E+ + +A ++
Sbjct: 462 NADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 496
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 27.5 bits (59), Expect = 3.7
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 422 MQLLSHEDPNVRYEALLAVQKLMVHN 447
+LL+ ED V +A + V +L
Sbjct: 23 TKLLNDEDQVVVNKAAVMVHQLSKKE 48
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 27.4 bits (59), Expect = 4.3
Identities = 23/155 (14%), Positives = 47/155 (30%), Gaps = 15/155 (9%)
Query: 294 VQSKVLKQLSILEQRKFDDEDIVEDVQFLNEKLQASVQDLSSFDEYKTEVKSGRLEWSPV 353
VQ+ +K L L K + + V L + + + L D +K+ E P
Sbjct: 61 VQNLAVKCLGPLV-SKVKEYQVETIVDTLCTNMLSDKEQLR--DISSIGLKTVIGELPPA 117
Query: 354 HRSAQFWRENAPRLHEKNYELLKSLIHLLETSRDPLVLSVASYDIGEYVRHCPR--GKHV 411
+ ++ L + D V A + + +
Sbjct: 118 SSGSALAANVCKKI-------TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH 170
Query: 412 IEQLGGKQLVMQLLSHEDPNVRYEALLAVQKLMVH 446
L ++ L+ VR ++A+ L++
Sbjct: 171 PSIL---TCLLPQLTSPRLAVRKRTIIALGHLVMS 202
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 25.7 bits (55), Expect = 5.5
Identities = 3/23 (13%), Positives = 8/23 (34%)
Query: 419 QLVMQLLSHEDPNVRYEALLAVQ 441
+ +L R A+ ++
Sbjct: 87 AAMEKLAETGTGFARKVAVNYLE 109
Score = 24.9 bits (53), Expect = 9.8
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 425 LSHEDPNVRYEALLAVQKL 443
++ E+ VR + A+ ++
Sbjct: 1 MADENKWVRRDVSTALSRM 19
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 861
Score = 26.3 bits (56), Expect = 9.8
Identities = 29/256 (11%), Positives = 73/256 (28%), Gaps = 20/256 (7%)
Query: 76 EMLNERRGHAAKTFLNLLEHISKDSTIQYI-----------LVLIDDILQEDRSRVEIFK 124
L + F L + D + ++ D ++ +
Sbjct: 27 TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWIT 86
Query: 125 EYSQTKREPVCSQFLNLLNGSDGFIINMTAKIIAKIACWSVDLLNPSDLNFYLTWLKDQL 184
+ S + + + L L + I N A++IA IA + +L + + D
Sbjct: 87 QVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPEL---MKIMVDNT 143
Query: 185 KLANNDYMQSVA-RCLQMMLRIDEYR----IAFINVDGIRTLLSVLSGRVNFQIQYQLIF 239
+ ++ + L M + + ++ N I + S + ++ +
Sbjct: 144 GAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALN 203
Query: 240 CLW-VLTFNPKLADRMNKFNVIPTLADILSDSVKEKNLIEKPTEPALAKENCIAMVQSKV 298
L L F +R + N + + + + + ++ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM 263
Query: 299 LKQLSILEQRKFDDED 314
+ L L +
Sbjct: 264 EQALYALTIATMKSPN 279
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.384
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,593,880
Number of extensions: 72644
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 29
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)