BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4829
(120 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V +PM+ +V+ L Y I FI D+ L+F+NA ++ + Y DA L
Sbjct: 246 YYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 83 EEYFEHMLEK 92
YF ++++K
Sbjct: 303 TNYFNYLIQK 312
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V +PM+ +V+ L Y I FI D+ L+F+NA ++ + Y DA L
Sbjct: 231 YYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 287
Query: 83 EEYFEHMLEK 92
YF ++++K
Sbjct: 288 TNYFNYLIQK 297
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 15 RRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQ 74
++ C D Y++ +KNP SF ++ +L Y +F+ D++LIF N +Y
Sbjct: 50 KQNCPD--YYDVIKNPXSFSCIKTKLKKGQ---YAYPSEFVKDVQLIFDNCSLYNTSNSV 104
Query: 75 EYSDAKNLEEYFEHML 90
KN+E YF + L
Sbjct: 105 VAITGKNIETYFNNQL 120
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAK-N 81
Y++ +KNPM ++ RL + Y F++D RLIF+N + + D E ++A
Sbjct: 52 YYKIIKNPMDLSTIKKRLQEDY-SMYSKPEDFVADFRLIFQNC-AEFNEPDSEVANAGIK 109
Query: 82 LEEYFEHMLEKWLPDYAYDDS 102
LE YFE +L+ P+ + S
Sbjct: 110 LENYFEELLKNLYPEKRFPKS 130
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + VKNPM ++ +L+ Y+ Q++ D+ L+F NA++Y KT + Y L
Sbjct: 49 YFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKL 105
Query: 83 EEYFEHMLE 91
E FE ++
Sbjct: 106 AEVFEQEID 114
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + VKNPM ++ +L+ Y+ Q++ D+ L+F NA++Y KT + Y L
Sbjct: 47 YFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKL 103
Query: 83 EEYFEHMLE 91
E FE ++
Sbjct: 104 AEVFEQEID 112
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNA--FVYYAKTDQEYSDA 79
Y++ +K PM V+ +L H + Y+ F++D+RLIFKN F K Q Y+D
Sbjct: 112 NYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADT 171
Query: 80 KNL 82
+ +
Sbjct: 172 QEI 174
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAK-N 81
Y++ +KNPM ++ RL + Y F++D RLIF+N + + D E ++A
Sbjct: 113 YYKIIKNPMDLSTIKKRLQEDY-SMYSKPEDFVADFRLIFQNC-AEFNEPDSEVANAGIK 170
Query: 82 LEEYFEHMLEKWLP 95
LE YFE +L+ P
Sbjct: 171 LENYFEELLKNLYP 184
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + VK+PM ++ +L+ Y+ Q++ DI L+F NA++Y KT + Y L
Sbjct: 52 YFDIVKSPMDLSTIKRKLDTGQ---YQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKL 108
Query: 83 EEYFEHMLE 91
E FE ++
Sbjct: 109 SEVFEQEID 117
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V +P + +V+ L Y I FI D L+F+NA ++ + Y DA L
Sbjct: 196 YYEIVHSPXALSIVKQNLEIGQ---YSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 252
Query: 83 EEYFEHMLEK 92
YF ++++K
Sbjct: 253 TNYFNYLIQK 262
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V +P + +V+ L Y I FI D L+F+NA ++ + Y DA L
Sbjct: 190 YYEIVHSPXALSIVKQNLEIGQ---YSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 246
Query: 83 EEYFEHMLEK 92
YF ++++K
Sbjct: 247 TNYFNYLIQK 256
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y++ VKNPM ++ +++ + YK +F +D+RL+F N + Y + + A+
Sbjct: 51 NYYDVVKNPMDLGTIKGKMDN---QEYKDAYEFAADVRLMFMNCYKYNPPDHEVVAMART 107
Query: 82 LEEYFEHMLEKWLPD 96
L++ FE K +PD
Sbjct: 108 LQDVFELHFAK-IPD 121
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYY-AKTDQEYSDAKN 81
Y + + PM F VR L Y++ ++ D+RLIF N+ Y +K + YS +
Sbjct: 54 YRDIIDTPMDFATVRETLEAG---NYESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSLR 110
Query: 82 LEEYFEHMLEKWLPDY 97
L +FE + L DY
Sbjct: 111 LSAFFEEHISSVLSDY 126
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYA-KTDQEYSDAKN 81
Y + + PM F VR L+ + Y + ++F DIRLIF NA Y K + YS
Sbjct: 43 YRDIIDTPMDFGTVRETLDAGN---YDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLR 99
Query: 82 LEEYFEHMLEKWLPDY 97
L FE ++K D+
Sbjct: 100 LSALFEEKMKKISSDF 115
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K+PM V+ ++ Y+ +F +D+RL+F N + Y + A+ L
Sbjct: 43 YHDIIKHPMDLSTVKRKMEN---RDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKL 99
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 100 QDVFEFRYAK-MPD 112
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K+PM V+ ++ Y+ +F +D+RL+F N + Y + A+ L
Sbjct: 45 YHDIIKHPMDLSTVKRKMEN---RDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKL 101
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 102 QDVFEFRYAK-MPD 114
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
GY + +K PM F +R +L+ Y + F D+RL+F N + N
Sbjct: 45 GYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCETFNEDDSDIGRAGHN 101
Query: 82 LEEYFEHMLEKW 93
+ +YFE +KW
Sbjct: 102 MRKYFE---KKW 110
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K+PM V+ ++ Y+ +F +D+RL+F N + Y + A+ L
Sbjct: 39 YHDIIKHPMDLSTVKRKMEN---RDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKL 95
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 96 QDVFEFRYAK-MPD 108
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM + +L + Y+ + FI D RL+F N +Y + Y A L
Sbjct: 46 YYDFIKEPMDLSTMEIKLESN---KYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRL 102
Query: 83 EEYFEHMLEKWLPDYAY 99
E++F + + K +P+Y++
Sbjct: 103 EKFFNNKV-KEIPEYSH 118
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
GY + +K PM F +R +L+ Y + F D+RL+F N + N
Sbjct: 42 GYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCETFNEDDSDIGRAGHN 98
Query: 82 LEEYFEHMLEKW 93
+ +YFE +KW
Sbjct: 99 MRKYFE---KKW 107
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K+PM V+ +++ Y F +D+RL+F N + Y + + A+ L
Sbjct: 45 YHDIIKHPMDLSTVKRKMDGRE---YPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKL 101
Query: 83 EEYFE 87
++ FE
Sbjct: 102 QDVFE 106
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 35.8 bits (81), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K+PM V+ +++ Y F +D+RL+F N + Y + + A+ L
Sbjct: 50 YHDIIKHPMDLSTVKRKMDG---REYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKL 106
Query: 83 EEYFE 87
++ FE
Sbjct: 107 QDVFE 111
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 7 YHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF 66
++Q + ++ D YH+ +KNPM ++ RL ++ Y + + + D +F N +
Sbjct: 40 FYQPVDAIKLNLPD--YHKIIKNPMDMGTIKKRLENNY---YWSASECMQDFNTMFTNCY 94
Query: 67 VYYAKTDQEYSDAKNLEEYF 86
+Y TD A+ LE+ F
Sbjct: 95 IYNKPTDDIVLMAQALEKIF 114
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 7 YHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF 66
++Q + ++ D YH+ +KNPM ++ RL ++ Y + + + D +F N +
Sbjct: 42 FYQPVDAIKLNLPD--YHKIIKNPMDMGTIKKRLENNY---YWSASECMQDFNTMFTNCY 96
Query: 67 VYYAKTDQEYSDAKNLEEYF 86
+Y TD A+ LE+ F
Sbjct: 97 IYNKPTDDIVLMAQALEKIF 116
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM ++ +L Y+ +F +D+RL+F N + Y + + A+ L
Sbjct: 47 YCDIIKHPMDMSTIKSKLESRE---YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 103
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 104 QDVFEMRFAK-MPD 116
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM ++ +L Y+ +F +D+RL+F N + Y + + A+ L
Sbjct: 60 YCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 116
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 117 QDVFEMRFAK-MPD 129
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM ++ +L Y+ +F +D+RL+F N + Y + + A+ L
Sbjct: 58 YCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 114
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 115 QDVFEMRFAK-MPD 127
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM ++ +L Y+ +F +D+RL+F N + Y + + A+ L
Sbjct: 39 YCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 95
Query: 83 EEYFEHMLEKWL 94
++ FE K L
Sbjct: 96 QDVFEMRFAKML 107
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 7 YHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF 66
++Q + ++ D YH+ +KNPM ++ RL ++ Y + + + D +F N +
Sbjct: 38 FYQPVDAIKLNLPD--YHKIIKNPMDMGTIKKRLENNY---YWSASECMQDFNTMFTNCY 92
Query: 67 VYYAKTDQEYSDAKNLEEYF 86
+Y TD A+ LE+ F
Sbjct: 93 IYNKPTDDIVLMAQALEKIF 112
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM F +R RL +GYK + +F D LI N Y A+ Y A L
Sbjct: 46 YLDHIKHPMDFATMRKRLE---AQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRL 102
Query: 83 EE 84
+
Sbjct: 103 RD 104
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K PM ++ RL ++ Y + + D +F N ++Y TD A+ L
Sbjct: 67 YHKIIKQPMDMGTIKRRLENNY---YWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTL 123
Query: 83 EEYF 86
E+ F
Sbjct: 124 EKIF 127
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K PM ++ RL ++ Y + + D +F N ++Y TD A+ L
Sbjct: 67 YHKIIKQPMDMGTIKRRLENNY---YWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTL 123
Query: 83 EEYF 86
E+ F
Sbjct: 124 EKIF 127
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +KNPM + ++ RL + Y + I D +F N ++Y D A+ L
Sbjct: 48 YYTIIKNPMDLNTIKKRLENKY---YAKASECIEDFNTMFSNCYLYNKPGDDIVLMAQAL 104
Query: 83 EEYFEHMLEK 92
E+ F L +
Sbjct: 105 EKLFMQKLSQ 114
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K P+ + R+ YK+I DI L+ KNA Y Q + DA ++
Sbjct: 47 YYAIIKEPIDLKTIAQRIQNG---SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSI 103
Query: 83 EEYF 86
++ F
Sbjct: 104 KKIF 107
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K P+ + R+ YK+I DI L+ KNA Y Q + DA ++
Sbjct: 48 YYAIIKEPIDLKTIAQRIQNG---SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSI 104
Query: 83 EEYF 86
++ F
Sbjct: 105 KKIF 108
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K P+ + R+ YK+I DI L+ KNA Y Q + DA ++
Sbjct: 45 YYAIIKEPIDLKTIAQRIQNG---SYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSI 101
Query: 83 EEYF 86
++ F
Sbjct: 102 KKIF 105
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 7 YHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF 66
+ Q + ++ K D Y+ +K PM + ++ RL + Y+ + I D +F N +
Sbjct: 35 FQQPVDAVKLKLPD--YYTIIKTPMDLNTIKKRLENKY---YEKASECIEDFNTMFSNCY 89
Query: 67 VYYAKTDQEYSDAKNLEEYFEHMLEK 92
+Y D A+ LE+ F L +
Sbjct: 90 LYNKTGDDIVVMAQALEKLFMQKLSQ 115
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y++ +K PM + +LN Y T +F++D++ +F+N Y ++ + + N
Sbjct: 48 NYYQIIKAPMDISSMEKKLNGGL---YCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDN 104
Query: 82 LEEYFEHMLEK 92
LE F + K
Sbjct: 105 LERCFHRAMMK 115
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + R+ + Y+ + +F++D+ IF N Y Y A+ L
Sbjct: 46 YYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTAIFDNCRYYNPSDSPFYQCAEVL 102
Query: 83 EEYFEHMLEKW 93
E +F L+ +
Sbjct: 103 ESFFVQKLKGF 113
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+P ++ +L Y+ +F +D+RL F N + Y + + A+ L
Sbjct: 45 YCDIIKHPXDXSTIKSKLESRE---YRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKL 101
Query: 83 EEYFEHMLEK 92
++ FE K
Sbjct: 102 QDVFEXRFAK 111
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + R+ + Y+ + +F++D+ IF N Y Y A+ L
Sbjct: 105 YYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 161
Query: 83 EEYFEHMLEKW 93
E +F L+ +
Sbjct: 162 ESFFVQKLKGF 172
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + R+ + Y+ + +F++D+ IF N Y Y A+ L
Sbjct: 105 YYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 161
Query: 83 EEYFEHMLEKW 93
E +F L+ +
Sbjct: 162 ESFFVQKLKGF 172
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + PM ++ + G + +++ D++L+F+NA Y + Q Y+DA
Sbjct: 64 YYKIILEPMDLKIIEHNIRNDKYAGEEGMIE---DMKLMFRNARHYNEEGSQVYNDA--- 117
Query: 83 EEYFEHMLEKWL 94
H+LEK L
Sbjct: 118 -----HILEKLL 124
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK 71
Y+EK+ +P+ + ++ + YKT+ F +D+ +F+NA YY +
Sbjct: 48 YYEKISDPLDLITIEKQILTGY---YKTVEAFDADMLKVFRNAEKYYGR 93
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + R+ + Y+ + +F++D+ IF N Y Y A+ L
Sbjct: 46 YYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 102
Query: 83 EEYFEHMLEKW 93
E +F L+ +
Sbjct: 103 ESFFVQKLKGF 113
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + R+ + Y+ + +F++D+ IF N Y Y A+ L
Sbjct: 53 YYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 109
Query: 83 EEYFEHMLEKW 93
E +F L+ +
Sbjct: 110 ESFFVQKLKGF 120
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 54 FISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKWL 94
F +D+ +I + +Y K E+SDAK LE+ H+ E+WL
Sbjct: 153 FDADLLVILSDIDGFYDKNPSEFSDAKRLEK-ITHIKEEWL 192
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K P ++ RL ++ Y + D F N ++Y TD A+ L
Sbjct: 47 YHKIIKQPXDXGTIKRRLENNY---YWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTL 103
Query: 83 EEYF 86
E+ F
Sbjct: 104 EKIF 107
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM ++ RL ++ Y + I D +F N ++Y D A+ L
Sbjct: 60 YYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 116
Query: 83 EEYF 86
E+ F
Sbjct: 117 EKLF 120
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K P ++ RL ++ Y + D F N ++Y TD A+ L
Sbjct: 41 YHKIIKQPXDXGTIKRRLENNY---YWAASECXQDFNTXFTNCYIYNKPTDDIVLXAQTL 97
Query: 83 EEYF 86
E+ F
Sbjct: 98 EKIF 101
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM ++ RL ++ Y + I D +F N ++Y D A+ L
Sbjct: 76 YYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 132
Query: 83 EEYF 86
E+ F
Sbjct: 133 EKLF 136
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++++K P+S +R +L + Y+T+ D+ L+F+NA Y Y L
Sbjct: 56 YYQQIKMPISLQQIRTKL---KNQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKL 112
Query: 83 EEYFE 87
++ +
Sbjct: 113 QQVMQ 117
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM ++ RL ++ Y + I D +F N ++Y D A+ L
Sbjct: 56 YYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 112
Query: 83 EEYF 86
E+ F
Sbjct: 113 EKLF 116
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM ++ RL ++ Y + I D +F N ++Y D A+ L
Sbjct: 56 YYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 112
Query: 83 EEYF 86
E+ F
Sbjct: 113 EKLF 116
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V P+ ++ +L E Y + +D +L+F NA YY EY A L
Sbjct: 44 YYEVVSQPIDLMKIQQKL---KMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKL 100
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E ++ P+ F ++ R+ +H Y+++ D+ L+ +NA + + Y D+ L
Sbjct: 47 YYELIRKPVDFKKIKERIR-NH--KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 103
Query: 83 EEYFEHMLEKWLPDYAYDDSLD 104
+ F + +K + DDSL+
Sbjct: 104 QSVFTSVRQKIEKE---DDSLE 122
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K P R+ + Y+ + +F++D IF N Y Y A+ L
Sbjct: 105 YYGVIKEPXDLATXEERVQRRY---YEKLTEFVADXTKIFDNCRYYNPSDSPFYQCAEVL 161
Query: 83 EEYFEHMLEKW 93
E +F L+ +
Sbjct: 162 ESFFVQKLKGF 172
>pdb|2JJZ|A Chain A, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
Length = 150
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 73 DQEYSDAKNLEEYFEHMLEKWLPDYAYDDSLDGELSEPSAKRL 115
DQ+YSD +NL E EK++ +D + +GE+ S KR+
Sbjct: 36 DQKYSDEENLPEKLTAFKEKYM---EFDLNNEGEIDLMSLKRM 75
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79
Y+ +K PM + +R + + Y+ I + D ++F NA Y Y DA
Sbjct: 54 YYLTIKKPMDMEKIRSHMMANK---YQDIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
>pdb|2JJZ|B Chain B, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
pdb|2JJZ|C Chain C, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
pdb|2JJZ|D Chain D, Crystal Structure Of Human Iba2, Orthorhombic Crystal Form
pdb|2VTG|A Chain A, Crystal Structure Of Human Iba2, Trigonal Crystal Form
Length = 150
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 73 DQEYSDAKNLEEYFEHMLEKWLPDYAYDDSLDGELSEPSAKRL 115
DQ+YSD +NL E EK++ +D + +GE+ S KR+
Sbjct: 36 DQKYSDEENLPEKLTAFKEKYM---EFDLNNEGEIDLMSLKRM 75
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79
Y+ +K PM + +R + + Y+ I + D ++F NA Y Y DA
Sbjct: 54 YYLTIKKPMDMEKIRSHMMAN---KYQDIDSMVEDFVMMFNNACTYNEPESLIYKDA 107
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E ++ P+ F ++ R+ +H Y+++ D+ L+ +NA + + Y D+ L
Sbjct: 51 YYELIRKPVDFKKIKERIR-NH--KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 83 EEYFEHMLEK 92
+ F + +K
Sbjct: 108 QSVFTSVRQK 117
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E ++ P+ F ++ R+ +H Y+++ D+ L+ +NA + + Y D+ L
Sbjct: 52 YYELIRKPVDFKKIKERIR-NH--KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 108
Query: 83 EEYFEHMLEK 92
+ F + +K
Sbjct: 109 QSVFTSVRQK 118
>pdb|2P0T|A Chain A, Structural Genomics, The Crystal Structure Of A Conserved
Putative Protein From Pseudomonas Syringae Pv. Tomato
Str. Dc3000
Length = 176
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 98 AYDDSLDGELSEPSAKR 114
+YDDSLDGE S+ KR
Sbjct: 7 SYDDSLDGEKSKTQVKR 23
>pdb|1AXI|A Chain A, Structural Plasticity At The Hgh:hghbp Interface
Length = 191
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 52 VQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEK 92
VQF+ R +F N+ VY A Y K+LEE + ++ +
Sbjct: 90 VQFL---RSVFANSLVYGASDSNVYDLLKDLEERIQTLMGR 127
>pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
Length = 191
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 52 VQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEK 92
VQF+ R +F N+ VY A Y K+LEE + ++ +
Sbjct: 90 VQFL---RSVFANSLVYGASDSNVYDLLKDLEERIQTLMGR 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,892,320
Number of Sequences: 62578
Number of extensions: 153880
Number of successful extensions: 483
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 70
length of query: 120
length of database: 14,973,337
effective HSP length: 82
effective length of query: 38
effective length of database: 9,841,941
effective search space: 373993758
effective search space used: 373993758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)