Query psy4829
Match_columns 120
No_of_seqs 180 out of 1083
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:49:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05497 Bromo_Brdt_I_like Brom 100.0 4.2E-32 9.1E-37 176.4 9.9 89 1-93 14-107 (107)
2 cd05505 Bromo_WSTF_like Bromod 100.0 2E-31 4.3E-36 170.5 9.4 86 1-90 9-97 (97)
3 cd05496 Bromo_WDR9_II Bromodom 100.0 4E-31 8.8E-36 174.5 9.6 93 1-97 14-110 (119)
4 cd05495 Bromo_cbp_like Bromodo 100.0 7E-31 1.5E-35 170.9 10.3 90 1-94 12-107 (108)
5 cd05502 Bromo_tif1_like Bromod 100.0 8.5E-31 1.8E-35 170.8 10.6 95 1-96 13-109 (109)
6 cd05503 Bromo_BAZ2A_B_like Bro 100.0 1.5E-30 3.3E-35 166.4 9.1 86 1-90 9-97 (97)
7 cd05507 Bromo_brd8_like Bromod 100.0 3.3E-30 7.2E-35 166.8 9.8 89 1-93 12-103 (104)
8 cd05504 Bromo_Acf1_like Bromod 100.0 3.8E-30 8.3E-35 169.1 10.1 89 1-93 21-112 (115)
9 cd05508 Bromo_RACK7 Bromodomai 100.0 4.1E-30 8.9E-35 164.8 9.1 83 2-89 13-98 (99)
10 cd05501 Bromo_SP100C_like Brom 100.0 1.2E-29 2.6E-34 163.0 10.4 89 2-95 12-101 (102)
11 KOG1474|consensus 100.0 5.3E-30 1.2E-34 208.0 10.3 98 1-102 231-333 (640)
12 cd05509 Bromo_gcn5_like Bromod 100.0 1.3E-29 2.9E-34 163.0 9.8 89 1-93 10-101 (101)
13 cd05528 Bromo_AAA Bromodomain; 100.0 5.5E-29 1.2E-33 162.9 10.2 92 1-96 12-110 (112)
14 cd05511 Bromo_TFIID Bromodomai 100.0 5.7E-29 1.2E-33 162.9 10.2 91 1-95 9-102 (112)
15 cd05510 Bromo_SPT7_like Bromod 100.0 5.1E-29 1.1E-33 163.0 9.9 89 1-93 16-109 (112)
16 cd05506 Bromo_plant1 Bromodoma 100.0 4.8E-29 1E-33 159.9 9.2 86 1-90 9-99 (99)
17 cd05498 Bromo_Brdt_II_like Bro 100.0 6.5E-29 1.4E-33 160.1 9.3 86 1-90 9-102 (102)
18 cd05500 Bromo_BDF1_2_I Bromodo 100.0 8.8E-29 1.9E-33 159.8 9.2 86 1-90 13-103 (103)
19 cd05499 Bromo_BDF1_2_II Bromod 100.0 1E-28 2.3E-33 159.2 9.2 85 2-90 10-102 (102)
20 cd05516 Bromo_SNF2L2 Bromodoma 100.0 1.5E-28 3.2E-33 159.8 9.5 80 9-92 24-106 (107)
21 cd05512 Bromo_brd1_like Bromod 100.0 1.2E-28 2.7E-33 157.8 8.9 82 1-86 10-94 (98)
22 cd05513 Bromo_brd7_like Bromod 100.0 1.7E-28 3.6E-33 157.1 8.6 82 1-86 10-94 (98)
23 cd05520 Bromo_polybromo_III Br 99.9 1.2E-27 2.5E-32 154.6 9.3 80 6-89 20-102 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 1.6E-27 3.5E-32 154.4 9.3 82 6-91 20-104 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 3.8E-27 8.2E-32 154.5 9.5 86 7-96 23-111 (113)
26 cd05525 Bromo_ASH1 Bromodomain 99.9 3.5E-27 7.5E-32 153.0 9.1 79 7-89 23-104 (106)
27 cd05518 Bromo_polybromo_IV Bro 99.9 4.8E-27 1E-31 151.7 9.0 81 5-89 19-102 (103)
28 cd05519 Bromo_SNF2 Bromodomain 99.9 4.4E-27 9.6E-32 151.9 8.9 81 6-90 20-103 (103)
29 smart00297 BROMO bromo domain. 99.9 9.8E-27 2.1E-31 150.4 9.8 87 2-92 17-106 (107)
30 cd05529 Bromo_WDR9_I_like Brom 99.9 8.6E-27 1.9E-31 155.8 9.6 87 2-92 34-127 (128)
31 cd05517 Bromo_polybromo_II Bro 99.9 7.1E-27 1.5E-31 150.9 8.7 79 6-88 20-101 (103)
32 cd05522 Bromo_Rsc1_2_II Bromod 99.9 6.3E-26 1.4E-30 146.7 9.2 79 7-89 22-103 (104)
33 cd05521 Bromo_Rsc1_2_I Bromodo 99.9 4.1E-25 8.9E-30 143.3 8.7 80 6-91 21-103 (106)
34 cd04369 Bromodomain Bromodomai 99.9 1E-24 2.3E-29 137.6 8.6 85 2-90 10-99 (99)
35 cd05492 Bromo_ZMYND11 Bromodom 99.9 2.2E-24 4.8E-29 140.2 10.0 82 8-93 17-106 (109)
36 PF00439 Bromodomain: Bromodom 99.9 1E-24 2.2E-29 135.3 7.7 77 1-81 5-84 (84)
37 cd05526 Bromo_polybromo_VI Bro 99.9 2.4E-21 5.2E-26 125.9 8.5 82 8-93 25-107 (110)
38 KOG1245|consensus 99.8 4E-21 8.7E-26 165.3 7.6 91 1-96 1310-1403(1404)
39 COG5076 Transcription factor i 99.8 5.2E-21 1.1E-25 147.4 7.1 89 7-99 163-254 (371)
40 KOG1472|consensus 99.7 3.1E-17 6.7E-22 133.3 4.6 92 2-97 616-710 (720)
41 cd05491 Bromo_TBP7_like Bromod 99.4 1.4E-13 3E-18 90.1 4.4 41 28-71 62-102 (119)
42 cd05494 Bromodomain_1 Bromodom 99.3 2.5E-13 5.4E-18 89.1 0.7 69 2-71 13-90 (114)
43 KOG0008|consensus 99.3 3.4E-12 7.3E-17 108.7 5.6 85 3-91 1393-1480(1563)
44 KOG0955|consensus 99.2 3.9E-11 8.4E-16 101.6 5.9 84 7-94 580-666 (1051)
45 KOG1827|consensus 99.1 7.8E-11 1.7E-15 95.2 5.1 78 10-91 76-156 (629)
46 KOG1472|consensus 99.1 9.4E-11 2E-15 96.0 4.4 77 7-87 301-380 (720)
47 KOG0386|consensus 99.1 2.2E-10 4.8E-15 96.0 5.5 86 6-95 1044-1132(1157)
48 KOG0008|consensus 99.0 8.9E-10 1.9E-14 94.3 5.4 86 2-91 1271-1359(1563)
49 KOG1474|consensus 98.9 4.5E-10 9.7E-15 92.1 2.0 93 2-98 2-99 (640)
50 KOG1828|consensus 98.5 1.2E-08 2.6E-13 78.3 -1.2 76 9-88 36-114 (418)
51 KOG1828|consensus 98.3 2.3E-07 4.9E-12 71.4 2.1 74 6-84 222-298 (418)
52 cd05493 Bromo_ALL-1 Bromodomai 97.9 3.9E-05 8.4E-10 51.3 6.0 69 29-100 58-126 (131)
53 COG5076 Transcription factor i 97.6 2.8E-05 6E-10 60.3 1.2 84 5-92 276-362 (371)
54 KOG0644|consensus 95.4 0.0082 1.8E-07 50.9 1.6 64 23-89 1046-1109(1113)
55 KOG0732|consensus 93.9 0.039 8.4E-07 48.1 2.3 59 10-72 533-601 (1080)
56 PF14372 DUF4413: Domain of un 90.3 2.5 5.3E-05 26.8 6.8 49 45-93 3-51 (101)
57 KOG0644|consensus 79.4 0.39 8.6E-06 41.2 -1.0 74 8-86 81-187 (1113)
58 TIGR02606 antidote_CC2985 puta 76.8 5.7 0.00012 23.5 3.7 28 34-64 12-39 (69)
59 PF03693 RHH_2: Uncharacterise 68.8 10 0.00022 23.1 3.6 27 34-63 15-41 (80)
60 KOG1827|consensus 47.2 2 4.3E-05 35.9 -2.9 63 20-85 225-287 (629)
61 PF14056 DUF4250: Domain of un 45.1 32 0.00069 19.5 2.7 24 31-58 7-30 (55)
62 PF10491 Nrf1_DNA-bind: NLS-bi 43.1 27 0.00059 25.3 2.7 19 53-71 186-204 (214)
63 PRK03972 ribosomal biogenesis 24.7 56 0.0012 23.7 1.8 30 49-78 12-41 (208)
64 KOG0732|consensus 24.6 18 0.0004 32.2 -0.8 49 20-71 798-848 (1080)
65 COG3609 Predicted transcriptio 23.1 1.8E+02 0.0038 17.8 3.7 30 34-66 15-44 (89)
66 KOG3740|consensus 21.7 72 0.0016 27.1 2.1 36 56-91 484-519 (706)
67 PTZ00473 Plasmodium Vir superf 21.6 3.1E+02 0.0068 22.0 5.5 69 31-99 148-221 (420)
68 PF03159 XRN_N: XRN 5'-3' exon 20.5 98 0.0021 22.7 2.4 62 50-113 29-92 (237)
69 KOG4009|consensus 20.5 2.7E+02 0.0058 19.0 4.3 63 28-96 56-118 (156)
70 KOG4086|consensus 20.1 46 0.00099 22.1 0.6 18 20-37 59-76 (130)
No 1
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.98 E-value=4.2e-32 Score=176.41 Aligned_cols=89 Identities=24% Similarity=0.395 Sum_probs=85.3
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++|+.|+| |..||| +||||++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.+
T Consensus 14 l~~l~~~~~s~~-F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 89 (107)
T cd05497 14 LKALWKHKFAWP-FQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLE---NNYYWSASECIQDFNTMFTNCYIYNKPGDDV 89 (107)
T ss_pred HHHHHhCCcCcc-ccCCCCcccccCCcHHHHHcCcccHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467899999999 999999 7999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy4829 76 YSDAKNLEEYFEHMLEKW 93 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~ 93 (120)
+.+|..|++.|+++++++
T Consensus 90 ~~~A~~l~~~f~~~l~~~ 107 (107)
T cd05497 90 VLMAQTLEKLFLQKLAQM 107 (107)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 999999999999998763
No 2
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=2e-31 Score=170.46 Aligned_cols=86 Identities=21% Similarity=0.479 Sum_probs=82.6
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.|+| |..||+ +|+||++|++||||+||++||+ ++.|.|+++|.+||.|||.||+.||+++|.++.
T Consensus 9 l~~l~~~~~s~~-F~~pv~~~~~pdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~ 84 (97)
T cd05505 9 LSKILKYRFSWP-FREPVTADEAEDYKKVITNPMDLQTMQTKCS---CGSYSSVQEFLDDMKLVFSNAEKYYENGSYVLS 84 (97)
T ss_pred HHHHHhCCCccc-ccCCCChhhcccHHHHcCCcCCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4829 78 DAKNLEEYFEHML 90 (120)
Q Consensus 78 ~a~~L~~~f~~~~ 90 (120)
+|..|++.|.+++
T Consensus 85 ~a~~le~~f~~~~ 97 (97)
T cd05505 85 CMRKTEQCCVNLL 97 (97)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 3
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=4e-31 Score=174.49 Aligned_cols=93 Identities=24% Similarity=0.428 Sum_probs=88.4
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCC-CCHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK-TDQEY 76 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~-~s~~~ 76 (120)
|+.|++|+.|+| |..||+ +|+|+++|++||||+||++||. ++.|.++++|.+||+|||.||+.||++ +|.++
T Consensus 14 l~~l~~~~~s~~-F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~---~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~ 89 (119)
T cd05496 14 VNLMWDCEDSEP-FRQPVDLLKYPDYRDIIDTPMDLGTVKETLF---GGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIY 89 (119)
T ss_pred HHHHHhCCcccc-ccCCCChhhcCcHHHHhCCcccHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Confidence 467899999999 999999 9999999999999999999999 799999999999999999999999985 99999
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q psy4829 77 SDAKNLEEYFEHMLEKWLPDY 97 (120)
Q Consensus 77 ~~a~~L~~~f~~~~~~~~~~~ 97 (120)
.+|..|++.|+++++++.+..
T Consensus 90 ~~a~~L~~~F~~~~~~l~~~~ 110 (119)
T cd05496 90 SMTLRLSALFEEHIKKIISDW 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
No 4
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=7e-31 Score=170.94 Aligned_cols=90 Identities=29% Similarity=0.555 Sum_probs=85.4
Q ss_pred ChhHHhc-CCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH
Q psy4829 1 MKQLIQY-HQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQ 74 (120)
Q Consensus 1 l~~l~~~-~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~ 74 (120)
++.|+++ +.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++.+|.+|++|||.||+.||+++|.
T Consensus 12 l~~l~~~~~~s~~-F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~ 87 (108)
T cd05495 12 LEKLYKQDPESLP-FRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLD---TGQYQDPWQYVDDVWLMFDNAWLYNRKTSR 87 (108)
T ss_pred HHHHHHcCcccch-hcCCCCccccCCCcHHHHhCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 3567788 99999 999998 8999999999999999999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q psy4829 75 EYSDAKNLEEYFEHMLEKWL 94 (120)
Q Consensus 75 ~~~~a~~L~~~f~~~~~~~~ 94 (120)
++.+|..|++.|++.+..++
T Consensus 88 i~~~a~~l~~~F~~~~~~~~ 107 (108)
T cd05495 88 VYKYCTKLAEVFEQEIDPVM 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 5
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=8.5e-31 Score=170.80 Aligned_cols=95 Identities=29% Similarity=0.571 Sum_probs=89.0
Q ss_pred ChhHHhcCCcccccCCCCC--CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS--DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSD 78 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~--~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~ 78 (120)
|+.|++|+.|+| |..||+ +|+|+++|++||||++|++||+.+..+.|+++++|.+||+|||+||+.||+++|.++.+
T Consensus 13 l~~l~~~~~s~~-F~~pv~~~~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~~ 91 (109)
T cd05502 13 LLELYCHELSLP-FHEPVSPSVPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVAQA 91 (109)
T ss_pred HHHHHhCCCChh-hcCCCCCCCCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 467899999999 999999 99999999999999999999993111699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy4829 79 AKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 79 a~~L~~~f~~~~~~~~~~ 96 (120)
|..|++.|++++++++|+
T Consensus 92 a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 92 GKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHHHHHHHHHHHCcC
Confidence 999999999999999985
No 6
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=1.5e-30 Score=166.41 Aligned_cols=86 Identities=23% Similarity=0.478 Sum_probs=83.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|++|+.+++ |..||+ +|+|+++|++||||++|++||+ ++.|+|+++|.+||+|||.||+.||+++|.++.
T Consensus 9 l~~l~~~~~~~~-F~~pv~~~~~p~Y~~iIk~PmdL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~ 84 (97)
T cd05503 9 LDEMEAHEDAWP-FLEPVNTKLVPGYRKIIKKPMDFSTIREKLE---SGQYKTLEEFAEDVRLVFDNCETFNEDDSEVGR 84 (97)
T ss_pred HHHHHcCCCchh-hcCCCCccccCCHHHHhCCCCCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy4829 78 DAKNLEEYFEHML 90 (120)
Q Consensus 78 ~a~~L~~~f~~~~ 90 (120)
+|..|++.|+++|
T Consensus 85 ~a~~l~~~f~~~~ 97 (97)
T cd05503 85 AGHNMRKFFEKRW 97 (97)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999875
No 7
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=3.3e-30 Score=166.76 Aligned_cols=89 Identities=18% Similarity=0.354 Sum_probs=85.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
++.|.+|+.|+| |..||+ +|+|+++|++||||+||++||+ ++.|+++++|.+|+.|||.||..||+++|.++.
T Consensus 12 l~~l~~~~~a~~-F~~pV~~~~~p~Y~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~~ 87 (104)
T cd05507 12 YRTLASHRYASV-FLKPVTEDIAPGYHSVVYRPMDLSTIKKNIE---NGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVYL 87 (104)
T ss_pred HHHHHcCCCCHh-hcCCCCccccCCHHHHhCCCcCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.+.+.+...
T Consensus 88 ~A~~l~~~~~~~~~~~ 103 (104)
T cd05507 88 MAVEMQREVMSQIQQL 103 (104)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999888754
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=3.8e-30 Score=169.11 Aligned_cols=89 Identities=26% Similarity=0.505 Sum_probs=86.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|++++.+++ |..||+ +|+||++|++||||+||++||+ ++.|.|+++|.+|++|||.||+.||+++|.++.
T Consensus 21 l~~l~~~~~s~~-F~~pvd~~~~pdY~~vI~~PmDL~tI~~kL~---~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~~ 96 (115)
T cd05504 21 LVEIVKHKDSWP-FLRPVSKIEVPDYYDIIKKPMDLGTIKEKLN---MGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVYK 96 (115)
T ss_pred HHHHHhCCCchh-hcCCCCccccccHHHHhcCcccHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|+++|+++++++
T Consensus 97 ~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 97 AGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 9
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.97 E-value=4.1e-30 Score=164.84 Aligned_cols=83 Identities=17% Similarity=0.272 Sum_probs=78.9
Q ss_pred hhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q psy4829 2 KQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSD 78 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~ 78 (120)
+.+. |+.|+| |..||+ +|||+++|++||||+||++||+ ++.|+++++|.+|++|||.||..||+++|.++.+
T Consensus 13 ~~~~-~~~s~~-F~~PV~~~~~pdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~~~ 87 (99)
T cd05508 13 ERMK-QPGAEP-FLKPVDLEQFPDYAQYVFKPMDLSTLEKNVR---KKAYGSTDAFLADAKWILHNAIIYNGGDHKLTQA 87 (99)
T ss_pred HHHh-CcCcch-hcCCCChhhCCCHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4556 999999 999999 9999999999999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy4829 79 AKNLEEYFEHM 89 (120)
Q Consensus 79 a~~L~~~f~~~ 89 (120)
|..|.+.++..
T Consensus 88 A~~l~~~~~~e 98 (99)
T cd05508 88 AKAIVKICEQE 98 (99)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 10
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-29 Score=162.99 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=83.3
Q ss_pred hhHHhcCCcccccCCCCC-CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q psy4829 2 KQLIQYHQELRLMRRKCS-DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAK 80 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~-~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~ 80 (120)
..|++|+.|++ |..++. +|||+++|++||||+||++||. ++.|.|+++|.+||+|||.||+.||+++ .++.+|.
T Consensus 12 ~~l~~~~~s~~-f~~~p~~~pdY~~iIk~PMDL~tI~~kL~---~~~Y~s~~ef~~D~~Lif~N~~~yN~~~-~~~~~a~ 86 (102)
T cd05501 12 LKVYCMSKSGF-FISKPYYIRDYCQGIKEPMWLNKVKERLN---ERVYHTVEGFVRDMRLIFHNHKLFYKDD-DFGQVGI 86 (102)
T ss_pred HHHHhCccccc-ccCCCCCCCchHHHcCCCCCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHcCCC-HHHHHHH
Confidence 46889999999 877444 9999999999999999999999 7999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHhCC
Q psy4829 81 NLEEYFEHMLEKWLP 95 (120)
Q Consensus 81 ~L~~~f~~~~~~~~~ 95 (120)
.|++.|++++++++.
T Consensus 87 ~L~~~Fek~~~~~f~ 101 (102)
T cd05501 87 TLEKKFEKNFKEVFA 101 (102)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 11
>KOG1474|consensus
Probab=99.96 E-value=5.3e-30 Score=207.97 Aligned_cols=98 Identities=26% Similarity=0.470 Sum_probs=92.6
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++|.++|| |..||| +|||+++|++||||+||++||. ++.|.++.+|.+||+|||.||++||++|++|
T Consensus 231 Lk~l~~~k~awp-F~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~---~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV 306 (640)
T KOG1474|consen 231 LKRLMKHKHAWP-FNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLE---KGEYKSAEEFAADVRLTFDNCMTYNPEGSDV 306 (640)
T ss_pred HHHHHhccCCCC-cCCCcCHHhcCCcchhhhcCCCccHHHHHhhhc---ccccCCHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 578999999999 999999 9999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy4829 76 YSDAKNLEEYFEHMLEKWLPDYAYDDS 102 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~~~~~~~~~~ 102 (120)
|.+|..|++.|+.+|..+..+.....+
T Consensus 307 ~~Ma~~L~~~Fe~rw~~~~~~~~~~~~ 333 (640)
T KOG1474|consen 307 YAMAKKLQEVFEERWASMPLEIEESES 333 (640)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999998777665433
No 12
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.3e-29 Score=163.04 Aligned_cols=89 Identities=24% Similarity=0.438 Sum_probs=85.3
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|.+|+.+++ |..||+ +|+|+++|++||||++|++||. ++.|+|+++|..||++||.||+.||+++|.++.
T Consensus 10 l~~l~~~~~a~~-F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~---~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~ 85 (101)
T cd05509 10 LDSLKNHKSAWP-FLEPVDKEEAPDYYDVIKKPMDLSTMEEKLE---NGYYVTLEEFVADLKLIFDNCRLYNGPDTEYYK 85 (101)
T ss_pred HHHHHhCCCchh-hcCCCChhhcCCHHHHhcCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 357899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|+++++++
T Consensus 86 ~a~~l~~~f~~~~~~~ 101 (101)
T cd05509 86 CANKLEKFFWKKLKEL 101 (101)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999998863
No 13
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.96 E-value=5.5e-29 Score=162.88 Aligned_cols=92 Identities=26% Similarity=0.346 Sum_probs=86.9
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCC----C
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKT----D 73 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~----s 73 (120)
|+.|++|+.+++ |..||+ +|+||++|++||||+||++||+ ++.|.|+++|.+|++|||.||+.||+++ +
T Consensus 12 l~~l~~~~~~~~-F~~pv~~~~~pdY~~vI~~PmdL~tI~~kl~---~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s 87 (112)
T cd05528 12 LKRLASDKRFNA-FTKPVDEEEVPDYYEIIKQPMDLQTILQKLD---THQYLTAKDFLKDIDLIVTNALEYNPDRDPADK 87 (112)
T ss_pred HHHHHhCCCchh-hcCCCCccccCcHHHHHcCCCCHHHHHHHHc---CCCcCCHHHHHHHHHHHHHHHHHHCCCCCcccc
Confidence 467899999999 999999 9999999999999999999999 6999999999999999999999999994 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Q psy4829 74 QEYSDAKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 74 ~~~~~a~~L~~~f~~~~~~~~~~ 96 (120)
.++.+|..|++.|.+++.+.+|-
T Consensus 88 ~i~~~A~~L~~~~~~~~~~~~~~ 110 (112)
T cd05528 88 LIRSRACELRDEVHAMIEAELDP 110 (112)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987763
No 14
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=5.7e-29 Score=162.89 Aligned_cols=91 Identities=21% Similarity=0.364 Sum_probs=87.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|++|+.|++ |..||+ +|+||++|++||||++|++||. ++.|+++++|.+|++|||+||..||+++|.++.
T Consensus 9 i~~l~~~~~s~~-F~~pv~~~~~p~Y~~~I~~PmdL~tI~~kl~---~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~ 84 (112)
T cd05511 9 VNELKNLPDSWP-FHTPVNKKKVPDYYKIIKRPMDLQTIRKKIS---KHKYQSREEFLEDIELIVDNSVLYNGPDSVYTK 84 (112)
T ss_pred HHHHHhCCCchh-hcCCCChhhcccHHHHhcCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy4829 78 DAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~~~ 95 (120)
+|..|.+.|+..++++..
T Consensus 85 ~A~~l~~~~~~~~~~~~~ 102 (112)
T cd05511 85 KAKEMLELAEELLAEREE 102 (112)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 999999999999998743
No 15
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=5.1e-29 Score=163.01 Aligned_cols=89 Identities=25% Similarity=0.439 Sum_probs=83.7
Q ss_pred ChhHHhc-CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCC-HH
Q psy4829 1 MKQLIQY-HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTD-QE 75 (120)
Q Consensus 1 l~~l~~~-~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s-~~ 75 (120)
|+.|.+| +.|++ |..||+ +|+|+++|++||||+||++||+ ++.|+|+++|.+|++|||.||+.||+++| .+
T Consensus 16 l~~l~~~~~~s~~-F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~ef~~D~~Li~~N~~~yN~~~s~~~ 91 (112)
T cd05510 16 LNELKTYTEHSTP-FLTKVSKREAPDYYDIIKKPMDLGTMLKKLK---NLQYKSKAEFVDDLNLIWKNCLLYNSDPSHPL 91 (112)
T ss_pred HHHHHhcCccccc-hhcCCChhhcCCHHHHhcCccCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678899 89999 999999 9999999999999999999999 69999999999999999999999999765 67
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy4829 76 YSDAKNLEEYFEHMLEKW 93 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~ 93 (120)
+.+|..|++.|+..+..+
T Consensus 92 ~~~A~~l~~~~~~~~~~~ 109 (112)
T cd05510 92 RRHANFMKKKAEHLLKLI 109 (112)
T ss_pred HHHHHHHHHHHHHHHHHC
Confidence 899999999999999876
No 16
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=4.8e-29 Score=159.87 Aligned_cols=86 Identities=24% Similarity=0.399 Sum_probs=82.8
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++++.|++ |..||+ +|+|+++|++||||++|++||+ ++.|.|+++|.+|+++||.||..||+++|.+
T Consensus 9 l~~l~~~~~~~~-F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~---~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i 84 (99)
T cd05506 9 LRKLMKHKWGWV-FNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLE---KGEYSSPEEFAADVRLTFANAMRYNPPGNDV 84 (99)
T ss_pred HHHHHhCCCCcc-ccCCCCccccCCCCHHHHHcCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467899999999 999998 7999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4829 76 YSDAKNLEEYFEHML 90 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~ 90 (120)
+.+|..|++.|+++|
T Consensus 85 ~~~a~~l~~~fe~~w 99 (99)
T cd05506 85 HTMAKELLKIFETRW 99 (99)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999876
No 17
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=6.5e-29 Score=160.08 Aligned_cols=86 Identities=23% Similarity=0.476 Sum_probs=82.1
Q ss_pred ChhHHhc---CCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy4829 1 MKQLIQY---HQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKT 72 (120)
Q Consensus 1 l~~l~~~---~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~ 72 (120)
|+.|+++ +.+++ |..||+ +|+|+++|++||||++|++||+ ++.|.|+++|..||++||.||+.||+++
T Consensus 9 l~~l~~~~~~~~a~~-F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yn~~~ 84 (102)
T cd05498 9 LKELFSKKHKAYAWP-FYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLD---NREYADAQEFAADVRLMFSNCYKYNPPD 84 (102)
T ss_pred HHHHHhCCCccccCc-ccCcCCccccCCCcHHHHccCCCcHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678888 89999 999998 8999999999999999999999 6999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy4829 73 DQEYSDAKNLEEYFEHML 90 (120)
Q Consensus 73 s~~~~~a~~L~~~f~~~~ 90 (120)
|.++.+|..|++.|+++|
T Consensus 85 s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 85 HPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 18
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=8.8e-29 Score=159.84 Aligned_cols=86 Identities=19% Similarity=0.350 Sum_probs=82.2
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++++.|++ |..||+ +|+|+++|++||||++|++||. ++.|.++++|..|+++||.||+.||+++|.+
T Consensus 13 i~~l~~~~~a~~-F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~ 88 (103)
T cd05500 13 IRSLKRLKDARP-FLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLK---SNVYTSVEEFTADFNLMVDNCLTFNGPEHPV 88 (103)
T ss_pred HHHHHcCCCChh-hcCCCCcccccCCCHHHHhcCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467999999999 999998 7999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4829 76 YSDAKNLEEYFEHML 90 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~ 90 (120)
+.+|..|++.|++.+
T Consensus 89 ~~~A~~l~~~fe~~~ 103 (103)
T cd05500 89 SQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999753
No 19
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1e-28 Score=159.18 Aligned_cols=85 Identities=25% Similarity=0.445 Sum_probs=80.0
Q ss_pred hhHHh---cCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy4829 2 KQLIQ---YHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTD 73 (120)
Q Consensus 2 ~~l~~---~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s 73 (120)
..|++ ++.|+| |..||+ +|+|+++|++||||++|++||+ ++.|+|+++|.+|+++||.||+.||+++|
T Consensus 10 ~~l~~~~~~~~s~~-F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~---~~~Y~s~~ef~~D~~li~~N~~~yn~~~s 85 (102)
T cd05499 10 KELMKPKHSAYNWP-FLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQ---NGQYQSAKEFERDVRLIFKNCYTFNPEGT 85 (102)
T ss_pred HHHHcccCCcccch-hcCCCCccccCCCCHHHHhcCCCCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45666 568999 999997 9999999999999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4829 74 QEYSDAKNLEEYFEHML 90 (120)
Q Consensus 74 ~~~~~a~~L~~~f~~~~ 90 (120)
.++.+|..|++.|+++|
T Consensus 86 ~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 86 DVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999875
No 20
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.5e-28 Score=159.75 Aligned_cols=80 Identities=20% Similarity=0.319 Sum_probs=77.4
Q ss_pred CcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy4829 9 QELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEY 85 (120)
Q Consensus 9 ~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~ 85 (120)
.|+| |..||+ +|+||++|++||||++|++||. ++.|.++++|..||.|||.||+.||+++|.++.+|..|++.
T Consensus 24 ~s~~-F~~~p~~~~~pdYy~iI~~Pmdl~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~a~~l~~~ 99 (107)
T cd05516 24 LAEV-FIQLPSRKELPEYYELIRKPVDFKKIKERIR---NHKYRSLEDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSV 99 (107)
T ss_pred eeHH-hhcCCCcccCCCHHHHcCCCCCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4899 999998 9999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy4829 86 FEHMLEK 92 (120)
Q Consensus 86 f~~~~~~ 92 (120)
|++++++
T Consensus 100 f~~~~~~ 106 (107)
T cd05516 100 FKSARQK 106 (107)
T ss_pred HHHHHhc
Confidence 9999875
No 21
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.96 E-value=1.2e-28 Score=157.83 Aligned_cols=82 Identities=27% Similarity=0.432 Sum_probs=78.6
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|.+|.+|+.+++ |..||+ +|+|+++|++||||+||++||. ++.|+|+++|..|++|||.||+.||+++|.+++
T Consensus 10 l~~l~~~~~~~~-F~~pVd~~~~pdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~ 85 (98)
T cd05512 10 LDQLQEKDTAEI-FSEPVDLSEVPDYLDHIKQPMDFSTMRKKLE---SQRYRTLEDFEADFNLIINNCLAYNAKDTIFYR 85 (98)
T ss_pred HHHHHhCCCchh-hcCCCCccccCCHHHHhcCCcCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4829 78 DAKNLEEYF 86 (120)
Q Consensus 78 ~a~~L~~~f 86 (120)
+|..|++.-
T Consensus 86 ~A~~l~~~~ 94 (98)
T cd05512 86 AAVRLRDQG 94 (98)
T ss_pred HHHHHHHhh
Confidence 999998764
No 22
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.7e-28 Score=157.11 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=78.1
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|+.++.+++ |..||+ +|+|+++|++||||+||++||+ ++.|.|+++|.+|++|||.||+.||+++|.+++
T Consensus 10 l~~l~~~~~~~~-F~~PV~~~~~pdY~~vIk~PmDL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~ 85 (98)
T cd05513 10 IRQLQRKDPHGF-FAFPVTDFIAPGYSSIIKHPMDFSTMKEKIK---NNDYQSIEEFKDDFKLMCENAMKYNKPDTIYYK 85 (98)
T ss_pred HHHHHcCCcccc-ccCcCCccccccHHHHHcCccCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999998 9999999999999999999999 799999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4829 78 DAKNLEEYF 86 (120)
Q Consensus 78 ~a~~L~~~f 86 (120)
+|..|...-
T Consensus 86 ~A~~L~~~~ 94 (98)
T cd05513 86 AAKKLLHSG 94 (98)
T ss_pred HHHHHHHhh
Confidence 999997654
No 23
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.95 E-value=1.2e-27 Score=154.56 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=76.4
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.++.++| |..+|+ +|+||++|++||||++|++||+ ++.|.++.+|..|++|||.||+.||+++|.++.+|..|
T Consensus 20 g~~~s~p-F~~~p~~~~~PdYy~iI~~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~L 95 (103)
T cd05520 20 GQLLAEP-FLKLPSKRKYPDYYQEIKNPISLQQIRTKLK---NGEYETLEELEADLNLMFENAKRYNVPNSRIYKDAEKL 95 (103)
T ss_pred CCCccHh-hhcCCCcccCCCHHHHcCCCcCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4568999 999998 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy4829 83 EEYFEHM 89 (120)
Q Consensus 83 ~~~f~~~ 89 (120)
+++|+++
T Consensus 96 ~~~f~~~ 102 (103)
T cd05520 96 QKLMQAK 102 (103)
T ss_pred HHHHHHh
Confidence 9999874
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.95 E-value=1.6e-27 Score=154.44 Aligned_cols=82 Identities=24% Similarity=0.388 Sum_probs=78.3
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.++.|++ |..||+ +|+||++|++||||++|++||. ++.|.++++|..|+.|||.||+.||+++|.++.+|..|
T Consensus 20 ~~~~a~~-F~~~p~~~~~pdYy~iIk~PmdL~tI~~kl~---~~~Y~s~~ef~~D~~l~~~Na~~yN~~~s~i~~~A~~L 95 (105)
T cd05515 20 GRRLSLI-FMRLPSKSEYPDYYDVIKKPIDMEKIRSKIE---GNQYQSLDDMVSDFVLMFDNACKYNEPDSQIYKDALTL 95 (105)
T ss_pred CCcccHH-hccCCCcccCCcHHHHcCCCcCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5688999 999998 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4829 83 EEYFEHMLE 91 (120)
Q Consensus 83 ~~~f~~~~~ 91 (120)
++.|.+...
T Consensus 96 ~~~~~~~~~ 104 (105)
T cd05515 96 QKVLLETKR 104 (105)
T ss_pred HHHHHHHHc
Confidence 999988754
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.95 E-value=3.8e-27 Score=154.46 Aligned_cols=86 Identities=26% Similarity=0.321 Sum_probs=81.5
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
++.+.+ |.++|+ +|+||++|++||||++|++||. ++.|.|+++|.+||.|||.||..||+++|.++.+|..|+
T Consensus 23 ~~l~~~-F~~~p~~~~~PdYy~iI~~Pmdl~tI~~kl~---~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~~~~~A~~L~ 98 (113)
T cd05524 23 RILCES-FIRVPKRRNEPEYYEVVSNPIDLLKIQQKLK---TEEYDDVDDLTADFELLINNAKAYYKPDSPEHKDACKLW 98 (113)
T ss_pred CchhHH-HhcCCCcccCCCHHHHhCCccCHHHHHHHhC---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 556678 999888 9999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q psy4829 84 EYFEHMLEKWLPD 96 (120)
Q Consensus 84 ~~f~~~~~~~~~~ 96 (120)
+.|++.++++.+.
T Consensus 99 ~~f~~~~~~~~~~ 111 (113)
T cd05524 99 ELFLSARNEVLSG 111 (113)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999998764
No 26
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=3.5e-27 Score=153.01 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=75.9
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
++.|+| |.++|+ +|+||++|++||||++|++||+ ++.|.|+++|..|+.|||.||..||+++|.++.+|..|+
T Consensus 23 ~~~s~~-F~~lp~k~~~pdYy~~I~~P~dL~tI~~kl~---~~~Y~s~~ef~~D~~l~f~Na~~yn~~~S~i~~~A~~L~ 98 (106)
T cd05525 23 QSLAIP-FINLPSKKKNPDYYERITDPVDLSTIEKQIL---TGYYKTPEAFDSDMLKVFRNAEKYYGRKSPIGRDVCRLR 98 (106)
T ss_pred CcccHh-hccCCCcccCCchhhhCCCCcCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 567899 999999 9999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy4829 84 EYFEHM 89 (120)
Q Consensus 84 ~~f~~~ 89 (120)
+.|++.
T Consensus 99 ~~f~~~ 104 (106)
T cd05525 99 KAYYQA 104 (106)
T ss_pred HHHHHc
Confidence 999874
No 27
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=4.8e-27 Score=151.68 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=76.7
Q ss_pred HhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy4829 5 IQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81 (120)
Q Consensus 5 ~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 81 (120)
..++.+.+ |..+|+ +||||++|++||||++|+++|. ++.|.|+++|.+|+.|||.||+.||+++|.++.+|..
T Consensus 19 ~gr~~~~~-F~~~p~~~~~pdYy~iIk~Pmdl~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~ 94 (103)
T cd05518 19 SGRRLCDL-FMEKPSKKDYPDYYKIILEPIDLKTIEHNIR---NDKYATEEELMDDFKLMFRNARHYNEEGSQVYEDANI 94 (103)
T ss_pred CCCcccHH-HhcCCCcccCccHHHHcCCCcCHHHHHHHHC---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 35678889 999998 9999999999999999999999 7999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy4829 82 LEEYFEHM 89 (120)
Q Consensus 82 L~~~f~~~ 89 (120)
|+++|+++
T Consensus 95 le~~~~~~ 102 (103)
T cd05518 95 LEKVLKEK 102 (103)
T ss_pred HHHHHHhc
Confidence 99999864
No 28
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=4.4e-27 Score=151.87 Aligned_cols=81 Identities=26% Similarity=0.430 Sum_probs=77.4
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
+++.+++ |..||+ +|+||++|++||||++|++||+ ++.|.|+.+|..||++||.||+.||+++|.++.+|..|
T Consensus 20 ~~~~~~~-F~~~p~~~~~pdYy~iIk~Pmdl~~I~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l 95 (103)
T cd05519 20 GRKLSEL-FLEKPSKKLYPDYYVIIKRPIALDQIKRRIE---GRAYKSLEEFLEDFHLMFANARTYNQEGSIVYEDAVEM 95 (103)
T ss_pred CCchhHH-hcCCCCCCCCcCHHHHcCCCcCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5678999 999998 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy4829 83 EEYFEHML 90 (120)
Q Consensus 83 ~~~f~~~~ 90 (120)
++.|++++
T Consensus 96 ~~~f~~~~ 103 (103)
T cd05519 96 EKAFKKKY 103 (103)
T ss_pred HHHHHHhC
Confidence 99998763
No 29
>smart00297 BROMO bromo domain.
Probab=99.94 E-value=9.8e-27 Score=150.37 Aligned_cols=87 Identities=26% Similarity=0.531 Sum_probs=83.8
Q ss_pred hhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q psy4829 2 KQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSD 78 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~ 78 (120)
+.+.+|+.+++ |..||+ +|+|+++|++||||++|++||+ ++.|.|+.+|.+||++||.||..||+++|.++.+
T Consensus 17 ~~~~~~~~~~~-F~~~~~~~~~p~Y~~~i~~P~dl~~I~~kl~---~~~Y~s~~ef~~D~~li~~Na~~~n~~~s~~~~~ 92 (107)
T smart00297 17 DKLDSHRLSWP-FLKPVDRKEAPDYYDIIKKPMDLSTIKKKLE---NGKYSSVEEFVADVQLMFSNAKTYNGPDSEVYKD 92 (107)
T ss_pred HHHHhCccchh-hccCCChhhccCHHHHhcCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 56788999999 999999 8999999999999999999999 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy4829 79 AKNLEEYFEHMLEK 92 (120)
Q Consensus 79 a~~L~~~f~~~~~~ 92 (120)
|..|.+.|++.|++
T Consensus 93 a~~l~~~f~~~~~~ 106 (107)
T smart00297 93 AKKLEKFFEKKLRE 106 (107)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999876
No 30
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=8.6e-27 Score=155.79 Aligned_cols=87 Identities=23% Similarity=0.392 Sum_probs=82.6
Q ss_pred hhHH---hcCCcccccCCCCC----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH
Q psy4829 2 KQLI---QYHQELRLMRRKCS----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQ 74 (120)
Q Consensus 2 ~~l~---~~~~s~~~F~~pv~----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~ 74 (120)
+.|. +++.+++ |..||+ +|+|+++|++||||+||++||+ ++.|+++++|..|++|||.||+.||+++|.
T Consensus 34 ~~l~~~~~~~~~~~-F~~pv~~~~~~p~Y~~iI~~PmdL~tI~~kl~---~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~ 109 (128)
T cd05529 34 DKLLLSLQLEIAEY-FEYPVDLRAWYPDYWNRVPVPMDLETIRSRLE---NRYYRSLEALRHDVRLILSNAETFNEPNSE 109 (128)
T ss_pred HHHHhcccCccccc-ccCCCCccccCCcHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 4566 8999999 999999 8999999999999999999999 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4829 75 EYSDAKNLEEYFEHMLEK 92 (120)
Q Consensus 75 ~~~~a~~L~~~f~~~~~~ 92 (120)
++.+|..|++.|...+..
T Consensus 110 i~~~A~~l~~~~~~~l~~ 127 (128)
T cd05529 110 IAKKAKRLSDWLLRILSS 127 (128)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 31
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.94 E-value=7.1e-27 Score=150.90 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=75.4
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.++.+++ |..+|+ +|+||++|++||||++|++||+ ++.|.++.+|..|++|||.||+.||+++|.++.+|..|
T Consensus 20 gr~~~~~-F~~lp~~~~~pdYy~vI~~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~lm~~Na~~yN~~~s~i~~~A~~l 95 (103)
T cd05517 20 GRLISEL-FQKLPSKVLYPDYYAVIKEPIDLKTIAQRIQ---SGYYKSIEDMEKDLDLMVKNAKTFNEPGSQVYKDANAI 95 (103)
T ss_pred CCChhHH-HhcCCCCCCCCCHHHHcCCCcCHHHHHHHHC---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4567899 999998 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy4829 83 EEYFEH 88 (120)
Q Consensus 83 ~~~f~~ 88 (120)
++.|+.
T Consensus 96 ~~~f~~ 101 (103)
T cd05517 96 KKIFTA 101 (103)
T ss_pred HHHHHh
Confidence 999975
No 32
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=6.3e-26 Score=146.71 Aligned_cols=79 Identities=29% Similarity=0.502 Sum_probs=76.3
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
++.+++ |..+|+ +|+||++|++||||++|++||. ++.|.++++|..|+.+||.||..||+++|.++.+|..|+
T Consensus 22 ~~l~~~-F~~~p~~~~~pdYy~~I~~Pmdl~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~i~~~A~~l~ 97 (104)
T cd05522 22 RLLTLH-FEKLPDKAREPEYYQEISNPISLDDIKKKVK---RRKYKSFDQFLNDLNLMFENAKLYNENDSQEYKDAVLLE 97 (104)
T ss_pred CcccHH-HhcCCCccccCcHHHHhCCCcCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 689999 999998 9999999999999999999999 699999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy4829 84 EYFEHM 89 (120)
Q Consensus 84 ~~f~~~ 89 (120)
+.|+.+
T Consensus 98 ~~f~~l 103 (104)
T cd05522 98 KEARLL 103 (104)
T ss_pred HHHHHh
Confidence 999874
No 33
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.1e-25 Score=143.26 Aligned_cols=80 Identities=26% Similarity=0.328 Sum_probs=74.6
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.++.+.+ |..+++ +|+||++|++||||++|++||+ + |.++++|.+|+.+||.||+.||+++|.++.+|..|
T Consensus 21 g~~~~~~-F~~lp~~~~~pdYy~iI~~PmdL~tI~~kl~----~-Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~l 94 (106)
T cd05521 21 GIEIHPI-FNVLPLRKDYPDYYKIIKNPLSLNTVKKRLP----H-YTNAQEFVNDLAQIPWNARLYNTKGSVIYKYALIL 94 (106)
T ss_pred CCCchHh-hhcCCccccCccHHHHhcCCCCHHHHHHHHH----c-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3556678 999888 9999999999999999999999 4 99999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4829 83 EEYFEHMLE 91 (120)
Q Consensus 83 ~~~f~~~~~ 91 (120)
+++|.+++.
T Consensus 95 e~~~~~~~~ 103 (106)
T cd05521 95 EKYINDVII 103 (106)
T ss_pred HHHHHHhhc
Confidence 999998764
No 34
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.92 E-value=1e-24 Score=137.64 Aligned_cols=85 Identities=33% Similarity=0.539 Sum_probs=80.5
Q ss_pred hhHHhc--CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q psy4829 2 KQLIQY--HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEY 76 (120)
Q Consensus 2 ~~l~~~--~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~ 76 (120)
..|.++ +.+++ |..||+ +|+|+++|++||||++|++||. ++.|.++.+|.+|+++||.||..||++++.++
T Consensus 10 ~~l~~~~~~~~~~-F~~~~~~~~~~~Y~~~i~~P~~l~~I~~kl~---~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~ 85 (99)
T cd04369 10 DALKKLKRDLSEP-FLEPVDPKEAPDYYEVIKNPMDLSTIKKKLK---NGEYKSLEEFEADVRLIFSNAKTYNGPGSPIY 85 (99)
T ss_pred HHHHhhcccccHH-HhcCCChhcCCCHHHHHhCcccHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 467777 89999 999998 9999999999999999999999 69999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy4829 77 SDAKNLEEYFEHML 90 (120)
Q Consensus 77 ~~a~~L~~~f~~~~ 90 (120)
.+|..|+..|++.+
T Consensus 86 ~~a~~l~~~~~~~~ 99 (99)
T cd04369 86 KDAKKLEKLFEKLL 99 (99)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998753
No 35
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.2e-24 Score=140.22 Aligned_cols=82 Identities=16% Similarity=0.234 Sum_probs=77.3
Q ss_pred CCcccccCCCCC--------CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy4829 8 HQELRLMRRKCS--------DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79 (120)
Q Consensus 8 ~~s~~~F~~pv~--------~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a 79 (120)
+.++| |..||. +|+|+++|++||||+||++||+ ++.|+++++|.+|+.|||+||..|||++|.++.+|
T Consensus 17 p~~~~-~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s~~~~~A 92 (109)
T cd05492 17 PPDTT-NRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKIN---SEKYTSLEEFKADALLLLHNTAIFHGADSEQYDAA 92 (109)
T ss_pred ccccc-ccccccccCchhccCCCHHHHhCCCCcHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 56789 999994 8999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy4829 80 KNLEEYFEHMLEKW 93 (120)
Q Consensus 80 ~~L~~~f~~~~~~~ 93 (120)
..|.+-....+.++
T Consensus 93 ~~l~~d~~~el~Ei 106 (109)
T cd05492 93 RWLYRDTCHDLREL 106 (109)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988888775
No 36
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.92 E-value=1e-24 Score=135.35 Aligned_cols=77 Identities=30% Similarity=0.499 Sum_probs=71.7
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.+++ |..||+ +|+|+++|+.||||++|++||+ ++.|.++.+|..||++||.||..||+++|.++.
T Consensus 5 l~~l~~~~~~~~-F~~~~~~~~~p~y~~~i~~P~dL~~I~~kl~---~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~~ 80 (84)
T PF00439_consen 5 LEELMKHPISSP-FSKPVDPKEYPDYYEIIKNPMDLSTIRKKLE---NGKYKSIEEFEADVRLIFQNARRYNPPDSPIYK 80 (84)
T ss_dssp HHHHHTSTTGGG-GSSSTHTTTSTTHHHHSSSS--HHHHHHHHH---TTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHcCCCchh-hcCCCChhhCCCHHHHHhhccchhhhhHHhh---ccchhhHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 468999999999 999987 9999999999999999999999 799999999999999999999999999999999
Q ss_pred HHHH
Q psy4829 78 DAKN 81 (120)
Q Consensus 78 ~a~~ 81 (120)
+|.+
T Consensus 81 ~A~~ 84 (84)
T PF00439_consen 81 AAEK 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9974
No 37
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.86 E-value=2.4e-21 Score=125.86 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=77.2
Q ss_pred CCcccccCCCCC-CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy4829 8 HQELRLMRRKCS-DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYF 86 (120)
Q Consensus 8 ~~s~~~F~~pv~-~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f 86 (120)
..|.+ |.+.++ .++|+++|+.||||+.|++||. ++.|.++++|..|+.+||.||++||++||.+|.+|..|+.+|
T Consensus 25 ~~s~~-f~~LP~~~~~~~~~ik~Pi~l~~Ik~ki~---~~~Y~~ld~~~~D~~lmf~NAr~yN~~~S~iy~dA~eLq~~f 100 (110)
T cd05526 25 CYSDS-LAELPELAVDGVGPKKIPLTLDIIKRNVD---KGRYRRLDKFQEDMFEVLERARRLSRTDSEIYEDAVELQQFF 100 (110)
T ss_pred CchHH-HHHCCCcccCchhhhcCCccHHHHHHHHH---cCCcCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHH
Confidence 46788 999998 8999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy4829 87 EHMLEKW 93 (120)
Q Consensus 87 ~~~~~~~ 93 (120)
...-.++
T Consensus 101 ~~~rd~~ 107 (110)
T cd05526 101 IKIRDEL 107 (110)
T ss_pred HHHHHHH
Confidence 9877664
No 38
>KOG1245|consensus
Probab=99.84 E-value=4e-21 Score=165.34 Aligned_cols=91 Identities=21% Similarity=0.361 Sum_probs=86.8
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|+.|..||| |.+||+ +||||+||++||||+||+.++. .+.|.++++|..||.|||.||..||.. |.+++
T Consensus 1310 l~e~~~~~~awP-FlepVn~~~vp~Y~~IIk~Pmdl~tir~k~~---~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i~~ 1384 (1404)
T KOG1245|consen 1310 LHELVVHKAAWP-FLEPVNPKEVPDYYDIIKKPMDLSTIREKLS---KGIYPSPEEFATDIELVFDNCETYNED-SEIGR 1384 (1404)
T ss_pred HHHHHHhhhcch-hhccCChhhcccHHHHhcChhHHHHHHHHHh---cccCCCHHHHHHHHHHHHHHHHHhccc-hhhhh
Confidence 357899999999 999999 9999999999999999999999 699999999999999999999999998 99999
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy4829 78 DAKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~~~~ 96 (120)
++..|.++|+..|...+|.
T Consensus 1385 ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1385 AGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred hcchHHHHHHHHHHhhcCC
Confidence 9999999999999887764
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.84 E-value=5.2e-21 Score=147.36 Aligned_cols=89 Identities=28% Similarity=0.428 Sum_probs=83.5
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
...+++ |..+|+ +|+||.+|+.||||++|+++|+ ++.|.++++|..|++|||.||..||++++.++.+|..|+
T Consensus 163 ~~~s~~-F~~~p~k~~~PdYy~iIk~Pm~L~~i~kkl~---~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~~~a~~l~ 238 (371)
T COG5076 163 RFLSSI-FLGLPSKREYPDYYEIIKSPMDLLTIQKKLK---NGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVDAKELE 238 (371)
T ss_pred cccccc-cccCCccccCCChheeecchhhHHHHHHHHH---hhhhhhHHHHHHHHHHHHHhhhhccCCCcchhhhhHHHH
Confidence 457888 999999 9999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCC
Q psy4829 84 EYFEHMLEKWLPDYAY 99 (120)
Q Consensus 84 ~~f~~~~~~~~~~~~~ 99 (120)
..|...+..+.+....
T Consensus 239 ~~~~~~i~~~~~~~~~ 254 (371)
T COG5076 239 KYFLKLIEEIPEEMLE 254 (371)
T ss_pred HHHHHHHHhccccchh
Confidence 9999999987666444
No 40
>KOG1472|consensus
Probab=99.68 E-value=3.1e-17 Score=133.33 Aligned_cols=92 Identities=23% Similarity=0.391 Sum_probs=87.0
Q ss_pred hhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q psy4829 2 KQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSD 78 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~ 78 (120)
.+|.+|..+|| |.+||+ +||||.+|++||||.||+.+|. .+.|..+..|+.|+.+||.||+.||+.++..++.
T Consensus 616 ~~l~~h~~awP-f~~Pv~~~e~pdyy~~I~~pmDl~tM~~~l~---~~~y~~~~~f~ad~~~vf~ncr~yn~~~~~y~k~ 691 (720)
T KOG1472|consen 616 DQLQNHGDAWP-FLKPVNKKEVPDYYDVIKHPMDLRTMQNRLK---DNQYTEVELFMADVVRVFANCRMYNGSDTQYYKC 691 (720)
T ss_pred hhhhcCCccCC-ccCccccccCCcHHHHhcccccHHHHhhhcc---ccchhhHHHHHHHHHHHHhhhhccCCccchheec
Confidence 56889999999 999999 9999999999999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCC
Q psy4829 79 AKNLEEYFEHMLEKWLPDY 97 (120)
Q Consensus 79 a~~L~~~f~~~~~~~~~~~ 97 (120)
|..|..+|...+...+...
T Consensus 692 ~~~le~~~~~k~~~~i~~~ 710 (720)
T KOG1472|consen 692 AQALEKFFLFKLNELILRV 710 (720)
T ss_pred ccchhhhhcchhhhhhhhh
Confidence 9999999999988765443
No 41
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.43 E-value=1.4e-13 Score=90.11 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=38.9
Q ss_pred CCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4829 28 KNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK 71 (120)
Q Consensus 28 ~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 71 (120)
-.||||+||++||. +++|.++.+|++|+++||.||+.||++
T Consensus 62 ~y~MDL~tIe~RL~---ng~Y~tp~~F~~DiklI~~Nc~~ynd~ 102 (119)
T cd05491 62 FYNMDLDTIEERLW---NGYYATPKDFLKDIKRIVRDAKTIGDR 102 (119)
T ss_pred EeccCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHhCCH
Confidence 36899999999999 799999999999999999999999986
No 42
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.33 E-value=2.5e-13 Score=89.10 Aligned_cols=69 Identities=10% Similarity=-0.052 Sum_probs=52.2
Q ss_pred hhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCC----CCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4829 2 KQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPS----HPEGYKTIVQFISDIRLIFKNAFVYYAK 71 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~----~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 71 (120)
+.+..|+.+|| |..||+ +|+|+++|++||||+||+++|... .+..|..-....++...++.||..+|..
T Consensus 13 ~~~~~~~~~~p-F~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (114)
T cd05494 13 KRHRRNEDAWP-FLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEGRRSPSNIY 90 (114)
T ss_pred HHhhhCCCCCC-cCCCCCchhcCCCChhhhcCCCCChHHHHHHHHccccccccccccccccccccccccccccCccccc
Confidence 45666779999 999998 999999999999999999999941 0123444445666777777777766653
No 43
>KOG0008|consensus
Probab=99.29 E-value=3.4e-12 Score=108.69 Aligned_cols=85 Identities=21% Similarity=0.359 Sum_probs=74.9
Q ss_pred hHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy4829 3 QLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79 (120)
Q Consensus 3 ~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a 79 (120)
++.+-+.||+ |..||+ .|+||.+|++||||.+|.+++. .+.|.+..+|.+|+++|+.||..||+..+....-|
T Consensus 1393 ~~~~ipes~~-f~~~v~~k~~~~yy~kik~pmdl~~i~~n~~---~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~ 1468 (1563)
T KOG0008|consen 1393 QMKEIPESWP-FHEPVNKKRVPDYYKKIKNPMDLETILKNIP---PHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKA 1468 (1563)
T ss_pred HHHhcchhcc-cccccchhhchHHHHHhcChhhHHHHhhcCC---ccccccHHHHhhhhHhhcccceeecCccccccHHH
Confidence 3567789999 999999 9999999999999999999999 69999999999999999999999999999877777
Q ss_pred HHHHHHHHHHHH
Q psy4829 80 KNLEEYFEHMLE 91 (120)
Q Consensus 80 ~~L~~~f~~~~~ 91 (120)
+.+-++....+.
T Consensus 1469 ~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1469 RKIGEVGLANLL 1480 (1563)
T ss_pred HHHHHHHHHHHH
Confidence 766555444443
No 44
>KOG0955|consensus
Probab=99.17 E-value=3.9e-11 Score=101.58 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=77.3
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
.+-... |..||+ +|||.++|++||||.+++.+++ ++.|.++++|.+|+.+|..||+.||..++..+..|..++
T Consensus 580 kD~~gi-f~~pvd~~e~pdy~~iik~pmd~~t~~~kl~---s~~y~tle~ieed~~l~~~nc~~yn~~dtv~~r~av~~~ 655 (1051)
T KOG0955|consen 580 KDSYGI-FAEPVDPSELPDYIDIIKKPMDFFTMRLKLE---SGAYSTLEPIEEDVNLIVSNCMEYNAKDTVYYRAAVRLR 655 (1051)
T ss_pred ccccCc-eeeccChhhcccHHHHhcCccchhhhhhhcc---ccchhhhhHHHHhHhHhHhHHHHhhccCeehHhhhHHHH
Confidence 344445 999999 9999999999999999999999 799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q psy4829 84 EYFEHMLEKWL 94 (120)
Q Consensus 84 ~~f~~~~~~~~ 94 (120)
+.....+...-
T Consensus 656 e~~~~~~~~ar 666 (1051)
T KOG0955|consen 656 ELIKKDFRNAR 666 (1051)
T ss_pred hhhhhHHHhcc
Confidence 99988887653
No 45
>KOG1827|consensus
Probab=99.12 E-value=7.8e-11 Score=95.17 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=72.8
Q ss_pred cccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy4829 10 ELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYF 86 (120)
Q Consensus 10 s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f 86 (120)
+.. |.+.++ .|+||.+|..||+|..|++|+. .+.|.+.+.|..|+.+|+.||+.||.+++.+++++..|+..|
T Consensus 76 ~d~-feklp~~~~~p~yy~~i~~pisl~~ik~kv~---k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~~~s~~l~~~~ 151 (629)
T KOG1827|consen 76 FDK-FEKLPSRKEFPEYYYVIQQPISLDQIKRKVK---KGRYKRLSFFQLDFLLMTENARLYNRPDSLIYKDSGELEKYF 151 (629)
T ss_pred chh-HhhccccccCCCcceeecCcccHHHHHHHHH---hcccccHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhhhcch
Confidence 345 888887 9999999999999999999999 599999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy4829 87 EHMLE 91 (120)
Q Consensus 87 ~~~~~ 91 (120)
.....
T Consensus 152 ~~~~~ 156 (629)
T KOG1827|consen 152 ISLED 156 (629)
T ss_pred hhhhc
Confidence 98664
No 46
>KOG1472|consensus
Probab=99.09 E-value=9.4e-11 Score=95.96 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=66.2
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
+..+++ |..+|+ +|+||.+|+.||||+++.+++. ++.|.+.++|+.|+.+||.||..||...+.....-..+.
T Consensus 301 ~~~s~~-~~~kvs~~~a~~y~~i~k~pmdl~t~~~k~~---~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~ 376 (720)
T KOG1472|consen 301 TEHSTP-FLEKVSKEDAPNYYQIIKAPMDLSTELKKLK---SGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIM 376 (720)
T ss_pred cccccc-cccCCChhhCcchHHhhhcchHHHHHHHHhc---cccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhh
Confidence 578999 999999 9999999999999999999999 799999999999999999999999987655444444443
Q ss_pred HHHH
Q psy4829 84 EYFE 87 (120)
Q Consensus 84 ~~f~ 87 (120)
.-+.
T Consensus 377 ~~~s 380 (720)
T KOG1472|consen 377 NSKS 380 (720)
T ss_pred ccCc
Confidence 3333
No 47
>KOG0386|consensus
Probab=99.06 E-value=2.2e-10 Score=95.97 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=80.2
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.++.+.. |...++ +|+||++|+.|+++..|.+++. +..|.+..+...|+.++|.||+.||..+|.+|..|..|
T Consensus 1044 ~r~~~~~-~~~~~s~k~~~d~~~~i~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~na~~~~~egs~~y~d~~~l 1119 (1157)
T KOG0386|consen 1044 GRELSEV-FLKLPSRKEYPDYYEIIKKPVAIDKIKKRIE---NHKYNSLKELEKDFMLLFNNARTYNEEGSRVYEDAIVL 1119 (1157)
T ss_pred ccccchh-cccCcccccccchHHHhcchhhHHHHhhhcc---ccccchHHHHHHHHHhhcchhhhhccCCceechhHHHH
Confidence 3456677 999888 9999999999999999999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q psy4829 83 EEYFEHMLEKWLP 95 (120)
Q Consensus 83 ~~~f~~~~~~~~~ 95 (120)
+.++.....++..
T Consensus 1120 ~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1120 QSVFKSARQEISK 1132 (1157)
T ss_pred HHHHhhhHHHHhc
Confidence 9999999988764
No 48
>KOG0008|consensus
Probab=98.96 E-value=8.9e-10 Score=94.32 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=76.2
Q ss_pred hhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q psy4829 2 KQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSD 78 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~ 78 (120)
.++.+.+.+.+ |..||+ +++||.+|+.||||.++++.+. .+.|.+-++|..|+.+|+.|..+||++.+.+...
T Consensus 1271 n~~~~~~~t~~-f~~Pv~~k~v~dyy~vi~~P~~lq~~kk~v~---kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~ 1346 (1563)
T KOG0008|consen 1271 NQARSSPNTYP-FPTPVNAKEVKDYYRVITPPMDLQTQKKLVR---KRLYESREHFLEELPLIVSNSTKYNGPLASLTRQ 1346 (1563)
T ss_pred HHHhcCCCCcC-CCCccchhhccchhhccCCCcchHHHHHHHH---HHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHH
Confidence 45677889999 999999 9999999999999999999999 4999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHH
Q psy4829 79 AKNLEEYFEHMLE 91 (120)
Q Consensus 79 a~~L~~~f~~~~~ 91 (120)
+..+....-..|.
T Consensus 1347 ~q~mls~~~~~~~ 1359 (1563)
T KOG0008|consen 1347 QQSMLSLCFEKLK 1359 (1563)
T ss_pred HHHHHHHHHHhhc
Confidence 8776655544443
No 49
>KOG1474|consensus
Probab=98.91 E-value=4.5e-10 Score=92.09 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=85.0
Q ss_pred hhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHH
Q psy4829 2 KQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEY 76 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~ 76 (120)
+.+..|..+|+ |..||+ .|.|+..|.+|||+++|+++++ +.+|.+..+..+|+..+|.||..||.++..+.
T Consensus 2 ~~~~~~~~~~~-f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e---~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~ 77 (640)
T KOG1474|consen 2 KEARKHKLAWP-FLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVE---NNYYFSASECIADFKTKFSNCYLFNDSGDDVV 77 (640)
T ss_pred ccccccccccc-ccCccchhhccchhhhcccCCCCCchhhhhhhc---cCccccHhhhhhhccccccchhcccCCccchh
Confidence 45678999999 999999 8999999999999999999999 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC
Q psy4829 77 SDAKNLEEYFEHMLEKWLPDYA 98 (120)
Q Consensus 77 ~~a~~L~~~f~~~~~~~~~~~~ 98 (120)
.++..++..|...+.....+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~ 99 (640)
T KOG1474|consen 78 RMKQSLEKLFPKKLRSMPSDEE 99 (640)
T ss_pred hccccchhhccccccccccccc
Confidence 9999999999887777654433
No 50
>KOG1828|consensus
Probab=98.51 E-value=1.2e-08 Score=78.26 Aligned_cols=76 Identities=20% Similarity=0.151 Sum_probs=67.5
Q ss_pred CcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy4829 9 QELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEY 85 (120)
Q Consensus 9 ~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~ 85 (120)
.-.- |.-||. .|+|.++|+.|||+.+++.+++ .++|.+..+|..|.+++..||..||..++.++..|++|..+
T Consensus 36 p~q~-fafplt~~map~y~~iis~Pmd~~t~r~kid---d~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v 111 (418)
T KOG1828|consen 36 PKQK-FAFPLTDKMAPNYLEIISEPMDRITKRSKID---DTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPV 111 (418)
T ss_pred hhhh-hccccchhhccchHhhhhcccccccccccCC---CccceechhhhhhhcccccchhhhhcCCccccccccccchh
Confidence 3344 666776 9999999999999999999999 69999999999999999999999999999999999988665
Q ss_pred HHH
Q psy4829 86 FEH 88 (120)
Q Consensus 86 f~~ 88 (120)
-..
T Consensus 112 ~~~ 114 (418)
T KOG1828|consen 112 RLG 114 (418)
T ss_pred hcc
Confidence 443
No 51
>KOG1828|consensus
Probab=98.34 E-value=2.3e-07 Score=71.36 Aligned_cols=74 Identities=14% Similarity=0.128 Sum_probs=64.9
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.-..... |..++. +|.|.-+|++|++++|++.+.. ...|.| .+|..|..+|+.||.+||.++..++.+|+.+
T Consensus 222 ~~~p~~~-lnyg~tas~aP~YSm~Ik~~~~~~Tygdk~~---andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank~ 296 (418)
T KOG1828|consen 222 RVDPVAY-LNYGPTASFAPGYSMTITEVEPPGTYGDKSS---ANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANKQ 296 (418)
T ss_pred ccCchhh-hcccchhhhcccccccccccCCCcchhhhhh---hhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHhh
Confidence 3344455 667776 9999999999999999999999 599999 8999999999999999999999999999877
Q ss_pred HH
Q psy4829 83 EE 84 (120)
Q Consensus 83 ~~ 84 (120)
..
T Consensus 297 lh 298 (418)
T KOG1828|consen 297 LH 298 (418)
T ss_pred hh
Confidence 65
No 52
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=97.92 E-value=3.9e-05 Score=51.33 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=60.0
Q ss_pred CcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy4829 29 NPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPDYAYD 100 (120)
Q Consensus 29 ~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f~~~~~~~~~~~~~~ 100 (120)
.|.||..|++|++ .|.|+++.+|.+||-.|+.-+..-.+....+-+....+..+|.+.+.+.++-....
T Consensus 58 ~p~dL~~V~kkl~---~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~Wf~~~ 126 (131)
T cd05493 58 PPLDLEAVGKKLE---AGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPWFNSE 126 (131)
T ss_pred CcccHHHHHHHHh---ccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccccccc
Confidence 3789999999999 69999999999999999999988777666677777788899999999988875544
No 53
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=97.56 E-value=2.8e-05 Score=60.27 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=77.0
Q ss_pred HhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy4829 5 IQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81 (120)
Q Consensus 5 ~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 81 (120)
..+..+|+ |..+++ .|+|++.|..+|++++.+.++. ++.|...+.|..|..+++.||..||+.....+..+..
T Consensus 276 ~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (371)
T COG5076 276 QAHVGAWP-FLRPVSDEEVPDYYKDIRDPMDLSTKELKLR---NNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANV 351 (371)
T ss_pred cccccccc-ccccCCcccccchhhhhhcccccccchhhhh---cccCCCccccccccchhhhcccccchhhhhhhhhccc
Confidence 45677899 999998 9999999999999999999998 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy4829 82 LEEYFEHMLEK 92 (120)
Q Consensus 82 L~~~f~~~~~~ 92 (120)
+...+......
T Consensus 352 ~~~~~~~~~~~ 362 (371)
T COG5076 352 LEDFVIKKTRL 362 (371)
T ss_pred hhhhHhhhhhh
Confidence 98888776654
No 54
>KOG0644|consensus
Probab=95.38 E-value=0.0082 Score=50.90 Aligned_cols=64 Identities=19% Similarity=0.408 Sum_probs=53.8
Q ss_pred hHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q psy4829 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHM 89 (120)
Q Consensus 23 Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f~~~ 89 (120)
|..--.-|..+..|..+|+ +.+|++.+.|..|+..|..||.+|.+.+.-+...+..|...|..-
T Consensus 1046 ~~~~fpvpls~evi~~rlE---n~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1046 VDNRFPVPLSLEVIRSRLE---NNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred cCCCCCCcccHHHHHHHHH---hhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 4444567899999999999 799999999999999999999999998887777777776666543
No 55
>KOG0732|consensus
Probab=93.93 E-value=0.039 Score=48.10 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=53.1
Q ss_pred cccccCCCCC--------CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHH--HHHHHHHHHhhhcCCC
Q psy4829 10 ELRLMRRKCS--------DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFIS--DIRLIFKNAFVYYAKT 72 (120)
Q Consensus 10 s~~~F~~pv~--------~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~--D~~li~~Na~~yn~~~ 72 (120)
+.- |-.|++ .++|.++|+++||+...-.++. .+.|.++.+|.. ++.|||.|+..||+..
T Consensus 533 ~~~-~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~---e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 533 SVI-FSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIE---EHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred ccC-CCCCCCcceecccchHHHHHHhhcchhHHhhhhhHH---HHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 344 778877 5799999999999999999999 599999999999 9999999999999864
No 56
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=90.27 E-value=2.5 Score=26.78 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHh
Q psy4829 45 PEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKW 93 (120)
Q Consensus 45 ~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f~~~~~~~ 93 (120)
+..|.|...|...+..|-.....++..+..+..+|..+.+.|++.|++.
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~ 51 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDC 51 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988888888778889999999999999999864
No 57
>KOG0644|consensus
Probab=79.35 E-value=0.39 Score=41.23 Aligned_cols=74 Identities=11% Similarity=0.022 Sum_probs=55.0
Q ss_pred CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCC--------------C----------CHHH------H
Q psy4829 8 HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGY--------------K----------TIVQ------F 54 (120)
Q Consensus 8 ~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y--------------~----------s~~~------f 54 (120)
++... |.-++| .|.|..+..-|.+|++++.+|. +..| . ++.+ .
T Consensus 81 ~i~kq-lv~~~d~~~pp~~~~~a~vpTlLgtg~qsLl---~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~ 156 (1113)
T KOG0644|consen 81 QILKQ-LVPMLDKPIPPRYCTIARVPTLLGTGRQSLL---RRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEI 156 (1113)
T ss_pred HHHHH-hccCcCCCCCcceeeeecccchhcchhHHHH---hhhhhcccccccccccccccccCcccccceeccCCcchhh
Confidence 34445 666777 7888889999999999999998 3444 2 3333 6
Q ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy4829 55 ISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYF 86 (120)
Q Consensus 55 ~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f 86 (120)
..-..+|-.||..++.|++ +++.++.+.++.
T Consensus 157 h~~a~~i~~at~~~akPgt-mvqkmk~ikrLl 187 (1113)
T KOG0644|consen 157 HHRAPSIGCATFSIAKPGT-MVQKMKNIKRLL 187 (1113)
T ss_pred hhcCcccccceeeecCcHH-HHHHHHHHHHHH
Confidence 6778889999999999999 666665554443
No 58
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=76.79 E-value=5.7 Score=23.47 Aligned_cols=28 Identities=7% Similarity=0.242 Sum_probs=23.8
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHH
Q psy4829 34 DVVRWRLNPSHPEGYKTIVQFISDIRLIFKN 64 (120)
Q Consensus 34 ~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~N 64 (120)
..|+..+. +|.|.|..++++|..+++.-
T Consensus 12 ~~i~~~V~---sG~Y~s~SEVir~aLR~le~ 39 (69)
T TIGR02606 12 SFIRSQVQ---SGRYGSASEVVRAALRLLEE 39 (69)
T ss_pred HHHHHHHH---CCCCCCHHHHHHHHHHHHHH
Confidence 45788888 79999999999999887754
No 59
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=68.81 E-value=10 Score=23.05 Aligned_cols=27 Identities=4% Similarity=0.204 Sum_probs=21.8
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHH
Q psy4829 34 DVVRWRLNPSHPEGYKTIVQFISDIRLIFK 63 (120)
Q Consensus 34 ~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~ 63 (120)
.-|+..+. +|.|.|..++++|.-.++.
T Consensus 15 ~~i~~~V~---sG~Y~s~SEvvR~aLRlle 41 (80)
T PF03693_consen 15 AFIEEQVA---SGRYSSASEVVREALRLLE 41 (80)
T ss_dssp HHHHHHHC---TTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHH
Confidence 35888999 7999999999999776664
No 60
>KOG1827|consensus
Probab=47.16 E-value=2 Score=35.91 Aligned_cols=63 Identities=10% Similarity=-0.056 Sum_probs=57.7
Q ss_pred CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy4829 20 DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEY 85 (120)
Q Consensus 20 ~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~ 85 (120)
+|.|+.+++-||.+....+++.+ +.|.....|..|....+.|+-.|+....-++..+..+.+.
T Consensus 225 ~~~~~w~~rP~~T~H~a~r~F~k---~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 225 WPQGCWIYRPEETVHRADRKFYK---QEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ccceeEeeCCccCccccccchhc---ccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 99999999999999999999994 8999999999999999999999999988888888877544
No 61
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=45.14 E-value=32 Score=19.54 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.3
Q ss_pred CCHHHHHHhhCCCCCCCCCCHHHHHHHH
Q psy4829 31 MSFDVVRWRLNPSHPEGYKTIVQFISDI 58 (120)
Q Consensus 31 mdL~~I~~kl~~~~~~~Y~s~~~f~~D~ 58 (120)
|=|+.|-.+|+ ..|.|.+++..|.
T Consensus 7 mLlS~VN~kLR----D~~~sLd~Lc~~~ 30 (55)
T PF14056_consen 7 MLLSIVNMKLR----DEYSSLDELCYDY 30 (55)
T ss_pred HHHHHHHHHHH----hccCCHHHHHHHh
Confidence 44788889999 7999999998775
No 62
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=43.05 E-value=27 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q psy4829 53 QFISDIRLIFKNAFVYYAK 71 (120)
Q Consensus 53 ~f~~D~~li~~Na~~yn~~ 71 (120)
.|..-++-|..||++|++.
T Consensus 186 sWt~aLR~IV~nCYk~Hgr 204 (214)
T PF10491_consen 186 SWTQALRTIVKNCYKYHGR 204 (214)
T ss_pred cHHHHHHHHHHHHHHHhcH
Confidence 8999999999999999985
No 63
>PRK03972 ribosomal biogenesis protein; Validated
Probab=24.67 E-value=56 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCCCHHHHH
Q psy4829 49 KTIVQFISDIRLIFKNAFVYYAKTDQEYSD 78 (120)
Q Consensus 49 ~s~~~f~~D~~li~~Na~~yn~~~s~~~~~ 78 (120)
....+|.+|+.++|=||..+|-.+..+-..
T Consensus 12 ~rtr~F~keL~~v~Pns~~i~RGk~~lkel 41 (208)
T PRK03972 12 RRTRSFGHDLERVFPNSLYLTRGKKTIQDL 41 (208)
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCccHHHH
Confidence 345789999999999999999766554443
No 64
>KOG0732|consensus
Probab=24.55 E-value=18 Score=32.25 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=38.6
Q ss_pred CcchHhhcCCc--CCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCC
Q psy4829 20 DKGYHEKVKNP--MSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK 71 (120)
Q Consensus 20 ~p~Y~~~I~~P--mdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~ 71 (120)
+.++...+..| |++..+.+++. ++.|.++.+|..|+.+|..||..+...
T Consensus 798 ~~~~v~~l~~~~~~~~~~~~~r~~---s~~~~~~~q~l~d~~li~r~a~~~~~~ 848 (1080)
T KOG0732|consen 798 SDNVVKILQINQMDWLEEILKRVW---SGEYSTPKQFLSDIKLILRDASSSEDS 848 (1080)
T ss_pred cccceeehhhhhhHHHHHHhhcCC---cccccccccccccchhhcccchhccCc
Confidence 55666655555 44555677777 899999999999999999999988764
No 65
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=23.10 E-value=1.8e+02 Score=17.84 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=23.1
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHh
Q psy4829 34 DVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF 66 (120)
Q Consensus 34 ~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~ 66 (120)
..|...++ +|.|.|..+++++.-..+.--.
T Consensus 15 ~~i~~lV~---~G~y~s~SeviR~alr~l~~~~ 44 (89)
T COG3609 15 EFIDELVE---SGRYKSRSEVIRAALRLLLEKR 44 (89)
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHHHHH
Confidence 55777788 6999999999988776665433
No 66
>KOG3740|consensus
Probab=21.74 E-value=72 Score=27.06 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4829 56 SDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLE 91 (120)
Q Consensus 56 ~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f~~~~~ 91 (120)
+|...||.||.+-|.+.-.-..-..+|...|.+.+.
T Consensus 484 ~d~~i~cE~cvtSnqkkAlK~ehT~rLKrAfvKalq 519 (706)
T KOG3740|consen 484 ADAAIVCENCVTSNQKKALKVEHTNRLKRAFVKALQ 519 (706)
T ss_pred cchHHHHHhhhhhcccccccccchHHHHHHHHHHHH
Confidence 488999999999998876666666777777766554
No 67
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=21.62 E-value=3.1e+02 Score=22.05 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHh-hh-cC---CCCHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy4829 31 MSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF-VY-YA---KTDQEYSDAKNLEEYFEHMLEKWLPDYAY 99 (120)
Q Consensus 31 mdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~-~y-n~---~~s~~~~~a~~L~~~f~~~~~~~~~~~~~ 99 (120)
+..+.|+..+...++..|.+.-+|+++.--|+..-. .+ +. ....-...+.+|..+++.-=.-+.|...+
T Consensus 148 eNig~Ik~lm~~~~~~~y~s~C~fvn~CidIYrk~i~~~Cs~~~~~~~s~st~C~EL~~F~D~Yd~~mYp~l~~ 221 (420)
T PTZ00473 148 ENVGDIKSLMGAPDNEHYASSCKFVNDCLDIYRKYKDEKCSGNSYNTFRGSTICNELNNFFDKYKEHLYPPLKY 221 (420)
T ss_pred hhhHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCccHHHHHHHHHHHHHHhhcCcccch
Confidence 577889999987778899999999999999987766 22 22 12234456677776666665566676654
No 68
>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions. The members of this family all appear to possess 5'-3' exonuclease activity 3.1.11 from EC. Thus, the aligned region may be necessary for 5'-3' exonuclease function.; GO: 0003676 nucleic acid binding, 0004527 exonuclease activity, 0005622 intracellular; PDB: 2Y35_A 3PIE_B 3PIF_C 3FQD_A.
Probab=20.54 E-value=98 Score=22.74 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHHhhhcCCCCH--HHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCcCCCChhh
Q psy4829 50 TIVQFISDIRLIFKNAFVYYAKTDQ--EYSDAKNLEEYFEHMLEKWLPDYAYDDSLDGELSEPSAK 113 (120)
Q Consensus 50 s~~~f~~D~~li~~Na~~yn~~~s~--~~~~a~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~k 113 (120)
.++.+.=||+-|.++|..-+..... .-..-..+...++..+..+-|....-- .=+..+|+||
T Consensus 29 ~~D~LYiDmN~IIH~~~~~~~~~~~~~~~~~~~~i~~~id~l~~~v~P~k~l~i--avDGvaP~AK 92 (237)
T PF03159_consen 29 EFDNLYIDMNGIIHNCIHPNDSSIPKTEEEIFQRIFNYIDRLVRIVRPRKLLYI--AVDGVAPRAK 92 (237)
T ss_dssp -ESEEEEETHHHHHHHHS-SSS----SHHHHHHHHHHHHHHHHHHH-ESSEEEE--E---S--HHH
T ss_pred cCCEEEEEcchhhhHhcCCcccCCCccHHHHHHHHHHHHHHhheeecCceEEEE--EcCCCCCchH
Confidence 4555677899999999877754211 223444555666666666666644310 1234678888
No 69
>KOG4009|consensus
Probab=20.52 E-value=2.7e+02 Score=19.04 Aligned_cols=63 Identities=14% Similarity=0.259 Sum_probs=39.6
Q ss_pred CCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHhCCC
Q psy4829 28 KNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 28 ~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f~~~~~~~~~~ 96 (120)
+.|||+-....... ..|.--.+.++=++.-+.-|..|+++++. ..+..+-+.|++.-..++-.
T Consensus 56 ~D~~c~yEA~eQ~r----rDkmVd~ei~nilrqRvk~C~lye~pnh~--q~C~k~veq~e~~~~n~f~k 118 (156)
T KOG4009|consen 56 KDPVCMYEAREQIR----RDKMVDIEIANILRQRVKWCYLYEGPNHY--QKCRKLVEQYEDATRNYFVK 118 (156)
T ss_pred cCchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCcchH--hHHHHHHHHHHHHHHHHhhh
Confidence 45666655555555 33444456666677889999999998663 34455555666666655544
No 70
>KOG4086|consensus
Probab=20.10 E-value=46 Score=22.09 Aligned_cols=18 Identities=17% Similarity=0.421 Sum_probs=15.7
Q ss_pred CcchHhhcCCcCCHHHHH
Q psy4829 20 DKGYHEKVKNPMSFDVVR 37 (120)
Q Consensus 20 ~p~Y~~~I~~PmdL~~I~ 37 (120)
-|.|...|+-|+||..++
T Consensus 59 ~PeYak~l~YP~CL~mLe 76 (130)
T KOG4086|consen 59 EPEYAKFLKYPQCLHMLE 76 (130)
T ss_pred CccHHHHHhhHhHHHHHH
Confidence 589999999999998654
Done!