Query psy4829
Match_columns 120
No_of_seqs 180 out of 1083
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 18:49:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4alg_A Bromodomain-containing 100.0 4E-32 1.4E-36 185.7 10.7 92 1-96 41-137 (154)
2 2yyn_A Transcription intermedi 100.0 9.5E-32 3.2E-36 180.3 11.3 99 1-102 29-130 (135)
3 3g0l_A Hwalp4, bromodomain adj 100.0 8.6E-32 2.9E-36 176.5 10.5 91 1-95 22-115 (117)
4 3d7c_A General control of amin 100.0 1.6E-31 5.6E-36 173.9 10.2 89 1-93 16-107 (112)
5 2oss_A HUNK1 protein, bromodom 100.0 2.7E-31 9.1E-36 176.4 10.2 92 1-96 30-126 (127)
6 2i7k_A Bromodomain-containing 100.0 3.6E-31 1.2E-35 173.6 10.7 93 1-97 17-112 (117)
7 3q2e_A Bromodomain and WD repe 100.0 1.3E-31 4.5E-36 177.0 8.4 98 1-102 19-120 (123)
8 1e6i_A Transcriptional activat 100.0 3.4E-31 1.2E-35 174.6 10.3 89 1-93 22-113 (121)
9 3nxb_A CAT eye syndrome critic 100.0 3.6E-31 1.2E-35 173.2 10.0 88 1-92 25-115 (116)
10 2d9e_A Peregrin; four-helix bu 100.0 7E-31 2.4E-35 173.1 10.6 89 1-93 16-107 (121)
11 3mb3_A PH-interacting protein; 100.0 5.7E-31 1.9E-35 176.4 8.9 94 1-98 30-127 (135)
12 2dat_A Possible global transcr 100.0 1.7E-30 5.8E-35 171.7 10.5 90 2-95 23-121 (123)
13 3p1f_A CREB-binding protein; s 100.0 1.8E-30 6.3E-35 170.5 10.4 90 2-95 21-116 (119)
14 2ouo_A HUNK1 protein, bromodom 100.0 1.2E-30 4.1E-35 173.9 9.5 90 2-95 32-129 (130)
15 3mb4_A Protein polybromo-1; PB 100.0 2.9E-30 9.8E-35 170.8 10.4 85 7-95 36-123 (124)
16 3jvl_A Bromodomain-containing 100.0 2.1E-30 7.1E-35 170.5 9.0 91 2-96 19-117 (120)
17 3iu5_A Protein polybromo-1; PB 100.0 4.1E-30 1.4E-34 168.3 10.1 84 8-95 27-113 (116)
18 3rcw_A Bromodomain-containing 100.0 6.3E-30 2.2E-34 171.3 10.7 89 1-93 22-113 (135)
19 3hme_A Bromodomain-containing 100.0 4.1E-30 1.4E-34 169.8 9.3 88 1-92 22-112 (123)
20 3k2j_A Protein polybromo-1; PB 100.0 8E-30 2.8E-34 169.9 10.3 87 6-96 37-126 (130)
21 2grc_A Probable global transcr 100.0 8.7E-30 3E-34 169.5 10.2 85 8-96 34-121 (129)
22 3mqm_A Probable histone-lysine 100.0 5.5E-30 1.9E-34 169.8 8.7 86 7-96 30-118 (126)
23 3ljw_A Protein polybromo-1; al 100.0 9.3E-30 3.2E-34 167.5 9.6 83 7-93 29-114 (120)
24 3fkm_X Signaling protein; brom 100.0 8E-30 2.7E-34 176.2 9.2 89 1-93 30-123 (166)
25 3uv4_A Second bromodomain of h 100.0 1.8E-29 6.2E-34 173.1 10.5 88 3-94 41-131 (158)
26 3u5n_A E3 ubiquitin-protein li 100.0 5.2E-29 1.8E-33 177.3 11.8 99 1-100 90-207 (207)
27 3o36_A Transcription intermedi 100.0 2.5E-29 8.7E-34 176.0 10.0 92 1-95 90-184 (184)
28 2ri7_A Nucleosome-remodeling f 100.0 2.8E-29 9.5E-34 174.3 8.4 89 1-93 81-172 (174)
29 3tlp_A Protein polybromo-1; PB 100.0 1.7E-28 5.9E-33 166.9 10.5 88 6-97 45-135 (150)
30 2ro1_A Transcription intermedi 100.0 5E-29 1.7E-33 175.3 7.3 97 1-103 85-186 (189)
31 3dai_A ATPase family AAA domai 100.0 5.5E-28 1.9E-32 161.0 10.5 87 2-92 20-113 (130)
32 3uv5_A Transcription initiatio 99.9 5.5E-27 1.9E-31 172.3 10.8 88 3-94 148-238 (265)
33 3uv5_A Transcription initiatio 99.9 7.8E-27 2.7E-31 171.5 10.4 89 1-93 23-114 (265)
34 2dkw_A Hypothetical protein KI 99.9 8.1E-27 2.8E-31 155.5 8.7 89 1-95 21-113 (131)
35 3aad_A Transcription initiatio 99.9 2.2E-26 7.5E-31 171.2 11.0 88 3-94 181-271 (292)
36 2r0y_A Chromatin structure-rem 99.9 2.2E-26 7.5E-31 172.5 9.6 83 6-92 177-262 (311)
37 2r10_A Chromatin structure-rem 99.9 3.7E-26 1.3E-30 174.3 9.4 83 6-92 227-312 (361)
38 3aad_A Transcription initiatio 99.9 2.5E-26 8.6E-31 170.9 6.0 88 1-92 56-146 (292)
39 2r0y_A Chromatin structure-rem 99.9 4.8E-23 1.7E-27 154.3 8.9 81 8-93 46-129 (311)
40 2r10_A Chromatin structure-rem 99.9 5.5E-23 1.9E-27 156.7 8.3 81 8-93 96-179 (361)
41 3iu6_A Protein polybromo-1; PB 99.8 1.3E-20 4.3E-25 127.0 9.7 84 7-96 28-112 (147)
42 3lqh_A Histone-lysine N-methyl 99.8 1E-18 3.6E-23 122.0 6.7 88 2-101 85-172 (183)
43 3ro3_B Minsc, peptide of prote 51.6 8.5 0.00029 16.8 1.4 16 47-62 6-21 (22)
44 3kxe_C Antitoxin protein PARD- 51.0 26 0.00089 20.8 4.1 29 34-65 16-44 (88)
45 2jb0_B Colicin E7; hydrolase/i 26.8 68 0.0023 20.6 3.3 33 34-69 33-65 (131)
46 1fr2_B Colicin E9; protein-pro 26.6 68 0.0023 20.7 3.3 33 34-69 36-68 (134)
47 3b4s_A Protein LUXT; APC91483. 22.3 78 0.0027 19.1 2.8 43 48-91 32-74 (94)
48 1pp5_A Microcin J25; lariat, p 22.2 9.4 0.00032 17.1 -1.0 14 20-33 6-19 (26)
No 1
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.98 E-value=4e-32 Score=185.70 Aligned_cols=92 Identities=24% Similarity=0.394 Sum_probs=87.9
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++|+.+|+ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.+
T Consensus 41 l~~l~~~~~a~~-F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~---~~~Y~s~~ef~~Dv~Lif~Na~~YN~~~s~i 116 (154)
T 4alg_A 41 MKALWKHQFAWP-FRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECMQDFNTMFTNCYIYNKPTDDI 116 (154)
T ss_dssp HHHHHTSTTCGG-GSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHhCcCchh-hcCCCChhhccCCCHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467899999999 999999 8999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCC
Q psy4829 76 YSDAKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~~~~ 96 (120)
+.+|..|++.|++.|+++.++
T Consensus 117 ~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 117 VLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp HHHHHHHHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHCCch
Confidence 999999999999999997655
No 2
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.97 E-value=9.5e-32 Score=180.29 Aligned_cols=99 Identities=25% Similarity=0.437 Sum_probs=92.2
Q ss_pred ChhHHhcCCcccccCCCCC--CcchHhhcCCcCCHHHHHHhhCCCCC-CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS--DKGYHEKVKNPMSFDVVRWRLNPSHP-EGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~--~p~Y~~~I~~PmdL~~I~~kl~~~~~-~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|++|+.+++ |..||+ +|+||++|++||||+||++||+. + +.|.++++|.+||+|||.||+.||+++|.++.
T Consensus 29 l~~L~~~~~s~~-F~~Pv~~~~pdY~~iIk~PmDL~tI~~kL~~--~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~ 105 (135)
T 2yyn_A 29 LLFLYCHEMSLA-FQDPVPLTVPDYYKIIKNPMDLSTIKKRLQE--DYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVAN 105 (135)
T ss_dssp HHHHHTSGGGGG-GSSCCCTTSTTHHHHCSSCCCHHHHHHHHHS--SSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHhCccchh-hcCCCcccCCCHHHHcCCCCCHHHHHHHHhc--cccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 99999999999999999999993 2 58999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCC
Q psy4829 78 DAKNLEEYFEHMLEKWLPDYAYDDS 102 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~~~~~~~~~~ 102 (120)
+|..|++.|++.+++++++..++.+
T Consensus 106 ~A~~L~~~f~~~~~~~~~~~~~p~~ 130 (135)
T 2yyn_A 106 AGIKLENYFEELLKNLYPEKRFPKS 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCC--
T ss_pred HHHHHHHHHHHHHHHhccccCCCCC
Confidence 9999999999999999999887654
No 3
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.97 E-value=8.6e-32 Score=176.45 Aligned_cols=91 Identities=21% Similarity=0.406 Sum_probs=87.6
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|.+|+.+++ |..||+ +|||+++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.++.
T Consensus 22 l~~l~~~~~s~~-F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 97 (117)
T 3g0l_A 22 LTEMETHEDAWP-FLLPVNLKLVPGYKKVIKKPMDFSTIREKLS---SGQYPNLETFALDVRLVFDNCETFNEDDSDIGR 97 (117)
T ss_dssp HHHHHTSTTCGG-GSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHHH
T ss_pred HHHHHhCCCchh-hcCcCChhhcCChHHHcCCCCCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy4829 78 DAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~~~ 95 (120)
+|..|++.|++.|++++.
T Consensus 98 ~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 98 AGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998864
No 4
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.97 E-value=1.6e-31 Score=173.93 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=86.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|.+|+.+++ |..||+ +|+|+++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.
T Consensus 16 l~~l~~~~~~~~-F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~~ 91 (112)
T 3d7c_A 16 LAQIKSHPSAWP-FMEPVKKSEAPDYYEVIRFPIDLKTMTERLR---SRYYVTRKLFVADLQRVIANCREYNPPDSEYCR 91 (112)
T ss_dssp HHHHHHSGGGGG-GSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHcCCCchh-hcCCCCcccccCHHHHccCCcCHHHHHHHHc---CCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|++.++++
T Consensus 92 ~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 92 CASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHC
Confidence 9999999999999975
No 5
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.97 E-value=2.7e-31 Score=176.44 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=87.2
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++|+.|++ |..||+ +||||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.+
T Consensus 30 l~~L~~~~~a~~-F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i 105 (127)
T 2oss_A 30 LKTLWKHQFAWP-FQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLE---NNYYWNAQECIQDFNTMFTNCYIYNKPGDDI 105 (127)
T ss_dssp HHHHHTSTTCGG-GSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHhCccchh-hcCCCChhhccCccHHHHcCCCCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 367899999999 999998 8999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCC
Q psy4829 76 YSDAKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~~~~ 96 (120)
+.+|..|++.|++.|+++..+
T Consensus 106 ~~~A~~L~~~f~~~~~~lp~~ 126 (127)
T 2oss_A 106 VLMAEALEKLFLQKINELPTE 126 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999987543
No 6
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.97 E-value=3.6e-31 Score=173.55 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=88.8
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++++.+++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.++.
T Consensus 17 l~~L~~~~~~~~-F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~---~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~~ 92 (117)
T 2i7k_A 17 MRQLQRKDPSAF-FSFPVTDFIAPGYSMIIKHPMDFSTMKEKIK---NNDYQSIEELKDNFKLMCTNAMIYNKPETIYYK 92 (117)
T ss_dssp HHHHHTSSGGGT-SSSCCCTTTSSSHHHHCSCCCCHHHHHHHHT---TTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHHH
T ss_pred HHHHHhCcccHH-hcCCCCccccCCHHHHhCCCCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467889999999 999998 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCC
Q psy4829 78 DAKNLEEYFEHMLEKWLPDY 97 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~~~~~ 97 (120)
+|..|++.|++.+..++-+.
T Consensus 93 ~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 93 AAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987664
No 7
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=176.99 Aligned_cols=98 Identities=28% Similarity=0.473 Sum_probs=90.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCC-CCHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK-TDQEY 76 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~-~s~~~ 76 (120)
|+.|++|+.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|..||+|||.||+.||++ +|.++
T Consensus 19 l~~l~~~~~s~~-F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~ 94 (123)
T 3q2e_A 19 VNLIFQCEDSEP-FRQPVDLVEYPDYRDIIDTPMDFGTVRETLD---AGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIY 94 (123)
T ss_dssp HHHHHTSGGGGG-GSSCCCTTTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHH
T ss_pred HHHHHhCCCcHh-hcCCCChhhcCCHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCC
Q psy4829 77 SDAKNLEEYFEHMLEKWLPDYAYDDS 102 (120)
Q Consensus 77 ~~a~~L~~~f~~~~~~~~~~~~~~~~ 102 (120)
.+|..|++.|++.+++++++...+.+
T Consensus 95 ~~A~~L~~~f~~~~~~~~~~~~~~~~ 120 (123)
T 3q2e_A 95 SMTLRLSALFEEKMKKISSDFKIGQK 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999888665533
No 8
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.97 E-value=3.4e-31 Score=174.60 Aligned_cols=89 Identities=22% Similarity=0.452 Sum_probs=86.0
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.+++ |..||+ +|+|+++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.
T Consensus 22 l~~l~~~~~a~~-F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~ 97 (121)
T 1e6i_A 22 LTELQNHAAAWP-FLQPVNKEEVPDYYDFIKEPMDLSTMEIKLE---SNKYQKMEDFIYDARLVFNNCRMYNGENTSYYK 97 (121)
T ss_dssp HHHHHHSTTCGG-GSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHcCCCchh-hCCCCChhhCcCHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|++.++++
T Consensus 98 ~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 98 YANRLEKFFNNKVKEI 113 (121)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999999875
No 9
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.97 E-value=3.6e-31 Score=173.22 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=84.9
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.|++ |..||+ +|+|+++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.++.
T Consensus 25 l~~l~~~~~s~~-F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 100 (116)
T 3nxb_A 25 LDVVKAHKDSWP-FLEPVDESYAPNYYQIIKAPMDISSMEKKLN---GGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTK 100 (116)
T ss_dssp HHHHHHSTTCGG-GSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhCCCcHh-hcCcCChhhccChHHHcCCCCCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4829 78 DAKNLEEYFEHMLEK 92 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~ 92 (120)
+|..|++.|++.|.+
T Consensus 101 ~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 101 MSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999875
No 10
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=173.12 Aligned_cols=89 Identities=25% Similarity=0.308 Sum_probs=85.7
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.+++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.
T Consensus 16 l~~l~~~~~~~~-F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~~ 91 (121)
T 2d9e_A 16 LEQLQEKDTGNI-FSEPVPLSEVPDYLDHIKKPMDFFTMKQNLE---AYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYR 91 (121)
T ss_dssp HHHHHHHCSSCS-SSSCCCTTTCTTHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHcCCccHh-hCCcCCccccCCHHHHcCCCcCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|+..|.++
T Consensus 92 ~A~~L~~~~~~~l~~~ 107 (121)
T 2d9e_A 92 AAVRLREQGGAVLRQA 107 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 11
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=176.42 Aligned_cols=94 Identities=27% Similarity=0.497 Sum_probs=89.2
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCC-CCHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK-TDQEY 76 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~-~s~~~ 76 (120)
|+.|.+|+.+++ |..||+ +||||++|++||||+||++||+ ++.|.++++|.+||+|||.||..||++ +|.++
T Consensus 30 l~~l~~~~~s~~-F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~ 105 (135)
T 3mb3_A 30 LNLIFQCEDSEP-FRQPVDLLEYPDYRDIIDTPMDFATVRETLE---AGNYESPMELCKDVRLIFSNSKAYTPSKRSRIY 105 (135)
T ss_dssp HHHHHHSGGGGG-GSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHH
T ss_pred HHHHHhCCCChh-hcCCCChhhCCCHHHHhCCCcCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999997 99999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC
Q psy4829 77 SDAKNLEEYFEHMLEKWLPDYA 98 (120)
Q Consensus 77 ~~a~~L~~~f~~~~~~~~~~~~ 98 (120)
.+|..|++.|++.|.+++++..
T Consensus 106 ~~A~~L~~~f~~~~~~~~~~~~ 127 (135)
T 3mb3_A 106 SMSLRLSAFFEEHISSVLSDYK 127 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 12
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=171.68 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=84.3
Q ss_pred hhHHhcC------CcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCC
Q psy4829 2 KQLIQYH------QELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKT 72 (120)
Q Consensus 2 ~~l~~~~------~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~ 72 (120)
+.|.++. .+++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++
T Consensus 23 ~~l~~~~d~~g~~~s~~-F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 98 (123)
T 2dat_A 23 DTVINYKDSSGRQLSEV-FIQLPSRKELPEYYELIRKPVDFKKIKERIR---NHKYRSLGDLEKDVMLLCHNAQTFNLEG 98 (123)
T ss_dssp HHHHHCBCSSSCBSGGG-GTSCCCTTTSCHHHHHCSSCCCHHHHHHHHT---TTCCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHhhhcccCCeeeHH-hcCCCCcccCCCHHHHcCCCCCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 4566664 7999 999999 9999999999999999999999 6999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Q psy4829 73 DQEYSDAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 73 s~~~~~a~~L~~~f~~~~~~~~~ 95 (120)
|.++.+|..|++.|++.++++.+
T Consensus 99 s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 99 SQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998754
No 13
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.97 E-value=1.8e-30 Score=170.55 Aligned_cols=90 Identities=28% Similarity=0.521 Sum_probs=84.3
Q ss_pred hhHHh-cCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 2 KQLIQ-YHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 2 ~~l~~-~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
..|.+ ++.|+| |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.+
T Consensus 21 ~~l~~~~~~s~~-F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i 96 (119)
T 3p1f_A 21 EALYRQDPESLP-FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLD---TGQYQEPWQYVDDVWLMFNNAWLYNRKTSRV 96 (119)
T ss_dssp HHHHTCTTTTGG-GSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHhCCCCch-hcCCCCchhccCCCHHHHhcCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 34444 789999 999999 8999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q psy4829 76 YSDAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~~~ 95 (120)
+.+|..|++.|++.+.+++.
T Consensus 97 ~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 97 YKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 14
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.97 E-value=1.2e-30 Score=173.92 Aligned_cols=90 Identities=21% Similarity=0.425 Sum_probs=84.0
Q ss_pred hhHHhcC---CcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy4829 2 KQLIQYH---QELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTD 73 (120)
Q Consensus 2 ~~l~~~~---~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s 73 (120)
+.|++++ .+|| |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|
T Consensus 32 ~~L~~~~~~~~a~~-F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 107 (130)
T 2ouo_A 32 KEMFAKKHAAYAWP-FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLE---AREYRDAQEFGADVRLMFSNCYKYNPPDH 107 (130)
T ss_dssp HHHTSGGGHHHHGG-GSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHhCCcchhHHH-hcCCCChhhccCCcHHHHcCCCCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4566665 4899 999998 7999999999999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q psy4829 74 QEYSDAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 74 ~~~~~a~~L~~~f~~~~~~~~~ 95 (120)
.++.+|..|++.|++.|+++..
T Consensus 108 ~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 108 EVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999998754
No 15
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.97 E-value=2.9e-30 Score=170.77 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=81.8
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
|+.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|..||+|||.||..||+++|.++.+|..|+
T Consensus 36 ~~~s~~-F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~L~ 111 (124)
T 3mb4_A 36 RRLSAI-FLRLPSRSELPDYYLTIKKPMDMEKIRSHMM---ANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLH 111 (124)
T ss_dssp CBGGGG-GSCCCCTTTCHHHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred CcccHH-hhcCCCccccCCHHHHcCCCCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 778899 999999 9999999999999999999999 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q psy4829 84 EYFEHMLEKWLP 95 (120)
Q Consensus 84 ~~f~~~~~~~~~ 95 (120)
+.|++.|+++-.
T Consensus 112 ~~f~~~~~~l~~ 123 (124)
T 3mb4_A 112 KVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999998743
No 16
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.97 E-value=2.1e-30 Score=170.52 Aligned_cols=91 Identities=21% Similarity=0.441 Sum_probs=84.6
Q ss_pred hhHHhcCC---cccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy4829 2 KQLIQYHQ---ELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTD 73 (120)
Q Consensus 2 ~~l~~~~~---s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s 73 (120)
+.|.+++. ||| |..||+ +|+|+++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|
T Consensus 19 ~~l~~~~~~~~a~~-F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s 94 (120)
T 3jvl_A 19 KEMFAKKHAAYAWP-FYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLE---SREYRDAQEFGADVRLMFSNCYKYNPPDH 94 (120)
T ss_dssp HHHTSGGGHHHHGG-GSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHhCcCccccch-hcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 45666665 999 999999 7999999999999999999999 69999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Q psy4829 74 QEYSDAKNLEEYFEHMLEKWLPD 96 (120)
Q Consensus 74 ~~~~~a~~L~~~f~~~~~~~~~~ 96 (120)
.++.+|..|++.|++.|+++..+
T Consensus 95 ~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 95 EVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999987654
No 17
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=168.26 Aligned_cols=84 Identities=23% Similarity=0.354 Sum_probs=81.4
Q ss_pred CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy4829 8 HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEE 84 (120)
Q Consensus 8 ~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~ 84 (120)
+.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.++.+|..|++
T Consensus 27 ~~s~~-F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~ 102 (116)
T 3iu5_A 27 LLCEL-FIRAPKRRNQPDYYEVVSQPIDLMKIQQKLK---MEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWD 102 (116)
T ss_dssp BGGGG-GSSCCCGGGCHHHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred eeeHH-hcCCCCcccCCCHHHHhCCCCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 67999 999999 9999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q psy4829 85 YFEHMLEKWLP 95 (120)
Q Consensus 85 ~f~~~~~~~~~ 95 (120)
.|++.++++..
T Consensus 103 ~f~~~~~~l~~ 113 (116)
T 3iu5_A 103 LYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.96 E-value=6.3e-30 Score=171.31 Aligned_cols=89 Identities=28% Similarity=0.425 Sum_probs=85.8
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.+++ |..||+ +||||++|++||||+||++||+ ++.|.++++|.+||+|||.||..||+++|.++.
T Consensus 22 l~~l~~~~~~~~-F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 97 (135)
T 3rcw_A 22 LDQLQDKDPARI-FAQPVSLKEVPDYLDHIKHPMDFATMRKRLE---AQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYR 97 (135)
T ss_dssp HHHHHHTCTTCS-SSSCCCTTTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHhCCcchh-hcCCCChhhcCCHHHHhCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|++.+++.
T Consensus 98 ~A~~L~~~~~~~~~~~ 113 (135)
T 3rcw_A 98 AAVRLRDQGGVVLRQA 113 (135)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999876
No 19
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.96 E-value=4.1e-30 Score=169.84 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=84.3
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|.+++.+++ |..||+ +||||++|++||||+||++||+ ++.|.++++|.+|++|||.||..||+++|.++.
T Consensus 22 l~~l~~~~~~~~-F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~ 97 (123)
T 3hme_A 22 LRQLQRKDPHGF-FAFPVTDAIAPGYSMIIKHPMDFGTMKDKIV---ANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYK 97 (123)
T ss_dssp HHHHHTTCTTCS-SSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHhCCccHh-hcCCCChhhccCHHHHCCCCCCHHHHHHHhc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467899999999 999998 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4829 78 DAKNLEEYFEHMLEK 92 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~ 92 (120)
+|..|++.|++.+.+
T Consensus 98 ~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 98 LAKKILHAGFKMMSK 112 (123)
T ss_dssp HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998865
No 20
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.96 E-value=8e-30 Score=169.90 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=82.5
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.|+.|+| |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|..|
T Consensus 37 g~~~s~~-F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~---~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A~~L 112 (130)
T 3k2j_A 37 GQLIAEP-FYHLPSKKKYPDYYQQIKMPISLQQIRTKLK---NQEYETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKL 112 (130)
T ss_dssp SCBTTGG-GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred CCCccHh-hcCCCChhhCccHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4567999 999999 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q psy4829 83 EEYFEHMLEKWLPD 96 (120)
Q Consensus 83 ~~~f~~~~~~~~~~ 96 (120)
++.|++.|+++..+
T Consensus 113 ~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 113 QQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987543
No 21
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.96 E-value=8.7e-30 Score=169.53 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=81.4
Q ss_pred CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy4829 8 HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEE 84 (120)
Q Consensus 8 ~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~ 84 (120)
+.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|..|++
T Consensus 34 ~~s~~-F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~~~A~~L~~ 109 (129)
T 2grc_A 34 QLSEV-FIQLPSRKELPEYYELIRKPVDFKKIKERIR---NHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQS 109 (129)
T ss_dssp BGGGG-GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH---TTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred eeeHH-hcCCCCcccCCCHHHHcCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 47899 999999 9999999999999999999999 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q psy4829 85 YFEHMLEKWLPD 96 (120)
Q Consensus 85 ~f~~~~~~~~~~ 96 (120)
.|++.++++...
T Consensus 110 ~f~~~~~~l~~~ 121 (129)
T 2grc_A 110 VFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHccCC
Confidence 999999987654
No 22
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.96 E-value=5.5e-30 Score=169.82 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=81.6
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
++.|+| |..||+ +||||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|..|+
T Consensus 30 ~~~s~~-F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~ 105 (126)
T 3mqm_A 30 QALAAP-LLNLPPKKKNADYYEKISDPLDLITIEKQIL---TGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLR 105 (126)
T ss_dssp CBTTGG-GSSCCCGGGCTTHHHHCSSCCCHHHHHHHHH---HTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred CChhHH-hcCCCCcccCCCHHHHcCCCCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456999 999999 9999999999999999999999 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q psy4829 84 EYFEHMLEKWLPD 96 (120)
Q Consensus 84 ~~f~~~~~~~~~~ 96 (120)
+.|++.++++.+.
T Consensus 106 ~~f~~~~~~~~~~ 118 (126)
T 3mqm_A 106 KAYYNARHEASAQ 118 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987543
No 23
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.96 E-value=9.3e-30 Score=167.46 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=79.7
Q ss_pred cCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLE 83 (120)
Q Consensus 7 ~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~ 83 (120)
|+.|++ |..||+ +|+||++|++||||++|++||+ ++.|.++++|..||+|||.||..||+++|.++.+|..|+
T Consensus 29 ~~~s~~-F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~ 104 (120)
T 3ljw_A 29 RLISEL-FQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQ---NGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIK 104 (120)
T ss_dssp CBTTGG-GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH---HTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHH
T ss_pred CcccHH-hcCCCCcccCCChHHHcCCCCCHHHHHHHHc---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 344999 999999 9999999999999999999999 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy4829 84 EYFEHMLEKW 93 (120)
Q Consensus 84 ~~f~~~~~~~ 93 (120)
+.|++.|+++
T Consensus 105 ~~f~~~~~~i 114 (120)
T 3ljw_A 105 KIFYMKKAEI 114 (120)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 24
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.96 E-value=8e-30 Score=176.16 Aligned_cols=89 Identities=27% Similarity=0.459 Sum_probs=85.7
Q ss_pred ChhHHhcCCcccccCCCCC-----CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS-----DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~-----~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|+.|++++.+++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|..||+|||.||+.||+++|.+
T Consensus 30 l~~L~~~~~s~~-F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~---~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i 105 (166)
T 3fkm_X 30 ILSLSKYEGGHI-FEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLK---KGQYAYPSEFVKDVQLIFDNCSLYNTSNSVV 105 (166)
T ss_dssp HHHHTTSTTGGG-GSSCCC-----CCCGGGCCSSCCCHHHHHHHHH---HTCCCSHHHHHHHHHHHHHHHHHSSCTTSHH
T ss_pred HHHHHhCCCChh-hcCCCChhhccCCCHHHhcCCCCCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467899999999 999998 8999999999999999999999 6999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy4829 76 YSDAKNLEEYFEHMLEKW 93 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~ 93 (120)
+.+|..|++.|++.|+++
T Consensus 106 ~~~A~~L~~~f~~~l~~~ 123 (166)
T 3fkm_X 106 AITGKNIETYFNNQLIVM 123 (166)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999875
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.96 E-value=1.8e-29 Score=173.12 Aligned_cols=88 Identities=17% Similarity=0.337 Sum_probs=84.3
Q ss_pred hHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy4829 3 QLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79 (120)
Q Consensus 3 ~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a 79 (120)
.|++++.||| |..||+ +|+||++|++||||+||++||+ ++.|.++++|..||+|||.||+.||+++|.++.+|
T Consensus 41 kl~~~~~s~~-F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~---~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~~~A 116 (158)
T 3uv4_A 41 KMMAVPDSWP-FHHPVNKKFVPDYYKVIVNPMDLETIRKNIS---KHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 116 (158)
T ss_dssp TTTTSTTCGG-GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCCchh-hcCcCChhhcccHHHHcCCccCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4677999999 999999 9999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q psy4829 80 KNLEEYFEHMLEKWL 94 (120)
Q Consensus 80 ~~L~~~f~~~~~~~~ 94 (120)
..|++.|++.++++.
T Consensus 117 ~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 117 QEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998864
No 26
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.96 E-value=5.2e-29 Score=177.33 Aligned_cols=99 Identities=23% Similarity=0.404 Sum_probs=92.3
Q ss_pred ChhHHhcCCcccccCCCCC--CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcC--------
Q psy4829 1 MKQLIQYHQELRLMRRKCS--DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYA-------- 70 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~--~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~-------- 70 (120)
|..|.+|+.+++ |..||+ +|+||++|++||||+||++||+.+.++.|.++++|.+||+|||.||+.||+
T Consensus 90 l~~l~~~~~s~~-F~~Pv~~~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~~~ 168 (207)
T 3u5n_A 90 LLYLYCHELSIE-FQEPVPASIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVY 168 (207)
T ss_dssp HHHHHTSTTCGG-GSSCCCTTSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhccchhh-hhccCChhhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHHHH
Confidence 357889999999 999999 999999999999999999999942237999999999999999999999999
Q ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy4829 71 ---------KTDQEYSDAKNLEEYFEHMLEKWLPDYAYD 100 (120)
Q Consensus 71 ---------~~s~~~~~a~~L~~~f~~~~~~~~~~~~~~ 100 (120)
++|.++.+|..|+.+|+++|++++|+.+++
T Consensus 169 A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~f~ 207 (207)
T 3u5n_A 169 ADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRTFA 207 (207)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999999999998763
No 27
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.96 E-value=2.5e-29 Score=176.01 Aligned_cols=92 Identities=26% Similarity=0.445 Sum_probs=87.4
Q ss_pred ChhHHhcCCcccccCCCCC--CcchHhhcCCcCCHHHHHHhhCCCCC-CCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS--DKGYHEKVKNPMSFDVVRWRLNPSHP-EGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~--~p~Y~~~I~~PmdL~~I~~kl~~~~~-~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|.+|+.+++ |..||+ +|+||++|++||||+||++||+. + +.|.++++|.+||+|||.||+.||+++|.++.
T Consensus 90 l~~l~~~~~s~~-F~~Pv~~~~pdY~~iIk~PmdL~tI~~kl~~--~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~~ 166 (184)
T 3o36_A 90 LLFLYCHEMSLA-FQDPVPLTVPDYYKIIKNPMDLSTIKKRLQE--DYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVAN 166 (184)
T ss_dssp HHHHHHSTTCHH-HHSCCCTTSTTHHHHCSSCCCHHHHHHHHHS--TTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHhchhhhh-hccccccCCCchhhhcCCCCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 357889999999 999999 99999999999999999999993 2 68999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q psy4829 78 DAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~~~ 95 (120)
+|..|++.|++++++++|
T Consensus 167 ~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 167 AGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999999999999987
No 28
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.96 E-value=2.8e-29 Score=174.26 Aligned_cols=89 Identities=21% Similarity=0.388 Sum_probs=85.5
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|.+|+.+++ |..||+ +|+|+++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.
T Consensus 81 l~~l~~~~~~~~-F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~ 156 (174)
T 2ri7_A 81 LRSLQAHKMAWP-FLEPVDPNDAPDYYGVIKEPMDLATMEERVQ---RRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQ 156 (174)
T ss_dssp HHHHHTSGGGTT-TSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH---TTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred HHHHHhhhhhhh-hhcCCCcccCCchHHHhCCcCCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 467889999999 999998 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|+++++++
T Consensus 157 ~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 157 CAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999875
No 29
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=166.93 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=83.4
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.|+.+++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|..|
T Consensus 45 ~~~~~~~-F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~~~A~~L 120 (150)
T 3tlp_A 45 GRRLCDL-FMVKPSKKDYPDYYKIILEPMDLKIIEHNIR---NDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL 120 (150)
T ss_dssp CCBGGGG-GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred CCcccHH-hcCCCchhhCcCHHHHhCCCCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4567999 999999 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q psy4829 83 EEYFEHMLEKWLPDY 97 (120)
Q Consensus 83 ~~~f~~~~~~~~~~~ 97 (120)
++.|++.|+++.+..
T Consensus 121 ~~~f~~~~~~l~~~p 135 (150)
T 3tlp_A 121 EKLLKEKRKELGPLP 135 (150)
T ss_dssp HHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHccCCC
Confidence 999999999998663
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.95 E-value=5e-29 Score=175.34 Aligned_cols=97 Identities=14% Similarity=0.248 Sum_probs=90.0
Q ss_pred ChhHHhcCCcccccCCCCCCcchHhhcC--CcCCHHHHHHhhCCCCCC---CCCCHHHHHHHHHHHHHHHhhhcCCCCHH
Q psy4829 1 MKQLIQYHQELRLMRRKCSDKGYHEKVK--NPMSFDVVRWRLNPSHPE---GYKTIVQFISDIRLIFKNAFVYYAKTDQE 75 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~~p~Y~~~I~--~PmdL~~I~~kl~~~~~~---~Y~s~~~f~~D~~li~~Na~~yn~~~s~~ 75 (120)
|..|.+|+.||| |.+||+ |+||++|+ +||||+||++||+ ++ .|.++++|.+||+|||+||++|| +++.+
T Consensus 85 L~~l~~~~~s~p-F~~pV~-~~Yy~iIk~~~PMDL~tIk~kL~---~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~s~~ 158 (189)
T 2ro1_A 85 LLALFCHEPCRP-LHQLAT-DSTFSLDQPGGTLDLTLIRARLQ---EKLSPPYSSPQEFAQDVGRMFKQFNKLT-EDKAD 158 (189)
T ss_dssp HHHHHHSTTHHH-HHSCSC-CTTCSSSCSSCCCCHHHHHHHHH---TSSSSCCSCHHHHHHHHHHHHHHHHHHC-CSSCS
T ss_pred HhhcccCccchh-hcCCCC-hhhhccccCCCcccHHHHHHHHh---cCCCcccCCHHHHHHHHHHHHHHHHHHC-CCCHH
Confidence 357889999999 999999 88999998 8999999999999 57 99999999999999999999999 58889
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q psy4829 76 YSDAKNLEEYFEHMLEKWLPDYAYDDSL 103 (120)
Q Consensus 76 ~~~a~~L~~~f~~~~~~~~~~~~~~~~~ 103 (120)
+.+|..|++.|+++|++++++..++.-.
T Consensus 159 ~~~a~~L~~~Fe~~~~~~~~~~~~~~~~ 186 (189)
T 2ro1_A 159 VQSIIGLQRFFETRMNEAFGDTKFSAVL 186 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTSCSCTTS
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCcccc
Confidence 9999999999999999999998887543
No 31
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.95 E-value=5.5e-28 Score=161.00 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=81.4
Q ss_pred hhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHH---
Q psy4829 2 KQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE--- 75 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~--- 75 (120)
+.|.+|+.+++ |..||+ +||||++|++||||+||++||+ ++.|.++++|.+|++|||.||..||+++|++
T Consensus 20 ~~l~~~~~~~~-F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~~~ 95 (130)
T 3dai_A 20 HRLAIDKRFRV-FTKPVDPDEVPDYVTVIKQPMDLSSVISKID---LHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRL 95 (130)
T ss_dssp HHHHTSGGGGG-GSSCCCTTTCTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHCCSSSHHHHH
T ss_pred HHHHcCCccHh-hcCCCChhhcCCHHHHcCCCCCHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHH
Confidence 56889999999 999999 9999999999999999999999 6999999999999999999999999999876
Q ss_pred -HHHHHHHHHHHHHHHHH
Q psy4829 76 -YSDAKNLEEYFEHMLEK 92 (120)
Q Consensus 76 -~~~a~~L~~~f~~~~~~ 92 (120)
+..|..|+..+...++.
T Consensus 96 i~~~A~~L~~~~~~~i~~ 113 (130)
T 3dai_A 96 IRHRACALRDTAYAIIKE 113 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 68889999999888874
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=5.5e-27 Score=172.33 Aligned_cols=88 Identities=17% Similarity=0.337 Sum_probs=84.6
Q ss_pred hHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy4829 3 QLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79 (120)
Q Consensus 3 ~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a 79 (120)
.|++|+.|+| |..||+ +|+||++|++||||+||++||+ ++.|.++++|..||+|||.||+.||+++|.++.+|
T Consensus 148 ~l~~~~~~~~-F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~---~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A 223 (265)
T 3uv5_A 148 KMMAVPDSWP-FHHPVNKKFVPDYYKVIVNPMDLETIRKNIS---KHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 223 (265)
T ss_dssp TTTTSTTCGG-GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHhhhhhHH-HhCCCChhHhCcHHHHhCCcccHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4678999999 999999 9999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q psy4829 80 KNLEEYFEHMLEKWL 94 (120)
Q Consensus 80 ~~L~~~f~~~~~~~~ 94 (120)
..|++.|++.++++.
T Consensus 224 ~~l~~~~~~~~~~~~ 238 (265)
T 3uv5_A 224 QEIVNVCYQTLTEYD 238 (265)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999864
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.94 E-value=7.8e-27 Score=171.51 Aligned_cols=89 Identities=15% Similarity=0.254 Sum_probs=85.5
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|..|.+|+.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|..||+|||.||..||+++|.++.
T Consensus 23 l~~l~~~~~~~~-F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~---~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~~ 98 (265)
T 3uv5_A 23 INDMRDLPNTYP-FHTPVNAKVVKDYYKIITRPMDLQTLRENVR---KRLYPSREEFREHLELIVKNSATYNGPKHSLTQ 98 (265)
T ss_dssp HHHHHTSTTCGG-GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCCchh-hhCCCChhhcCCHHHHhCCCCcHHHHHHHHH---cCCCCCHHHHHHHHHHHHhhhhhcCCCCChHHH
Confidence 357889999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4829 78 DAKNLEEYFEHMLEKW 93 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~~ 93 (120)
+|..|++.|++.++++
T Consensus 99 ~A~~l~~~~~~~~~~~ 114 (265)
T 3uv5_A 99 ISQSMLDLCDEKLKEK 114 (265)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=8.1e-27 Score=155.53 Aligned_cols=89 Identities=25% Similarity=0.324 Sum_probs=81.7
Q ss_pred ChhHHhcCCcccccCCCCCCcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCH----HH
Q psy4829 1 MKQLIQYHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQ----EY 76 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~----~~ 76 (120)
|+.|.+|+.++| |..| +||||++|++||||+||++||. ++.|.++++|.+||+|||.||..||+++|+ ++
T Consensus 21 l~~l~~~~~~~~-F~~P--~pdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~~~i~ 94 (131)
T 2dkw_A 21 TKRLATDKRFNI-FSKP--VSDYLEVIKEPMDLSTVITKID---KHNYLTAKDFLKDIDLICSNALEYNPDKDPGDKIIR 94 (131)
T ss_dssp HHHHHHSGGGCT-TSSC--CSSCTTSCSSCCCHHHHHHHHH---TTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred HHHHHhCccchh-hcCc--CccHHhHcCCCcCHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHCCCCChhHHHHH
Confidence 357889999999 9999 9999999999999999999999 699999999999999999999999999995 57
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q psy4829 77 SDAKNLEEYFEHMLEKWLP 95 (120)
Q Consensus 77 ~~a~~L~~~f~~~~~~~~~ 95 (120)
..|..|++.+...+..-+.
T Consensus 95 ~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 95 HRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999998865443
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=171.21 Aligned_cols=88 Identities=17% Similarity=0.337 Sum_probs=84.4
Q ss_pred hHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy4829 3 QLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA 79 (120)
Q Consensus 3 ~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a 79 (120)
.|.+++.+++ |..||+ +||||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|
T Consensus 181 ~l~~~~~s~~-F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~---~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A 256 (292)
T 3aad_A 181 KMMAVPDSWP-FHHPVNKKFVPDYYKVIVNPMDLETIRKNIS---KHKYQSRESFLDDVNLILANSVKYNGPESQYTKTA 256 (292)
T ss_dssp TGGGSTTCGG-GTSCCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred hhhcCcchhH-HHhcccccccccHHHHcCCcCCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4778999999 999999 9999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q psy4829 80 KNLEEYFEHMLEKWL 94 (120)
Q Consensus 80 ~~L~~~f~~~~~~~~ 94 (120)
..|++.|++.+.++-
T Consensus 257 ~~L~~~~~~~~~~~~ 271 (292)
T 3aad_A 257 QEIVNVCYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 36
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.93 E-value=2.2e-26 Score=172.46 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=80.9
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
+|+.|++ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|..|
T Consensus 177 ~~~~s~~-F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~---~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L 252 (311)
T 2r0y_A 177 KVKLSEP-FMELVDKDELPEYYEIVHSPMALSIVKQNLE---IGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 252 (311)
T ss_dssp SSCTTGG-GSSCCCTTTCHHHHHHCSSCCCHHHHHHHHH---HTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred CCccHHH-HhCCCChhhcccHHHHhCCccCHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5789999 999999 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy4829 83 EEYFEHMLEK 92 (120)
Q Consensus 83 ~~~f~~~~~~ 92 (120)
++.|++.+++
T Consensus 253 ~~~f~~~~~~ 262 (311)
T 2r0y_A 253 TNYFNYLIQK 262 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 37
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.93 E-value=3.7e-26 Score=174.26 Aligned_cols=83 Identities=28% Similarity=0.478 Sum_probs=80.9
Q ss_pred hcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHH
Q psy4829 6 QYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82 (120)
Q Consensus 6 ~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L 82 (120)
.|+.||+ |..||+ +|+||++|++||||+||++||+ ++.|.++++|.+||+|||.||+.||+++|.++.+|..|
T Consensus 227 ~~~~s~~-F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~---~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L 302 (361)
T 2r10_A 227 KVKLSEP-FMELVDKDELPEYYEIVHSPMALSIVKQNLE---IGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302 (361)
T ss_dssp SSCTTGG-GSSCCCTTTCTHHHHHCSSCCCHHHHHHHHH---HTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred CCcchhc-ccCCCChhhcccHHHHhcCcccHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5789999 999999 9999999999999999999999 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy4829 83 EEYFEHMLEK 92 (120)
Q Consensus 83 ~~~f~~~~~~ 92 (120)
++.|+..+++
T Consensus 303 ~~~f~~~~~~ 312 (361)
T 2r10_A 303 TNYFNYLIQK 312 (361)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 38
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.93 E-value=2.5e-26 Score=170.87 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=83.4
Q ss_pred ChhHHhcCCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy4829 1 MKQLIQYHQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYS 77 (120)
Q Consensus 1 l~~l~~~~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~ 77 (120)
|+.|++|+.+++ |..||+ +|+||++|++||||+||++||+ ++.|.++.+|.+|++|||.||..||+++|.++.
T Consensus 56 l~~l~~~~~a~~-F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~---~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~~ 131 (292)
T 3aad_A 56 INDMRDLPNTYP-FHTPVNAKVVKDYYKIITRPMDLQTLRENVR---KRLYPSREEFREHLELIVKNSATYNGPKHSLTQ 131 (292)
T ss_dssp HHHHSSSTTCGG-GSSSCCTTTSTTHHHHCSSCCCHHHHHHHHH---TTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHHH
T ss_pred HHHHHhCCcchh-hcCCCCchhcccHHHHcCCcCCHHHHHHHhh---CCCcCCHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 356889999999 999999 9999999999999999999999 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy4829 78 DAKNLEEYFEHMLEK 92 (120)
Q Consensus 78 ~a~~L~~~f~~~~~~ 92 (120)
+|..|++.|++.+++
T Consensus 132 ~A~~L~~~~~~~~~~ 146 (292)
T 3aad_A 132 ISQSMLDLCDEKLKE 146 (292)
T ss_dssp HHTHHHHTTTTTGGG
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999999877765
No 39
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.88 E-value=4.8e-23 Score=154.33 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=75.8
Q ss_pred CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy4829 8 HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEE 84 (120)
Q Consensus 8 ~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~ 84 (120)
..+++ |..||+ +||||++|++||||+||++||. ++|.++++|..||+|||.||+.||+++|.++.+|..|++
T Consensus 46 ~~~~~-F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl~----~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~~~A~~l~~ 120 (311)
T 2r0y_A 46 DIFKD-FIKLPSRKFHPQYYYKIQQPMSINEIKSRDY----EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 120 (311)
T ss_dssp HHHGG-GSSCCCTTTCHHHHHHCSSCCCHHHHHHSCC----CSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred chhHH-hcCCCCcccCCChHHHcCCCCCHHHHHHHHh----cccCCHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 47899 999999 9999999999999999999985 455599999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy4829 85 YFEHMLEKW 93 (120)
Q Consensus 85 ~f~~~~~~~ 93 (120)
.|++.|.+.
T Consensus 121 ~~~~~~~k~ 129 (311)
T 2r0y_A 121 LIEFEVLKA 129 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999998875
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.88 E-value=5.5e-23 Score=156.73 Aligned_cols=81 Identities=20% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCcccccCCCCC---CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q psy4829 8 HQELRLMRRKCS---DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEE 84 (120)
Q Consensus 8 ~~s~~~F~~pv~---~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~ 84 (120)
..+++ |..||+ +||||++|++||||+||++||. .+|.++++|..||+|||.||+.||+++|.++.+|..|++
T Consensus 96 ~~~~~-F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl~----~y~~~~~~f~~D~~li~~Na~~yN~~~s~i~~~a~~l~~ 170 (361)
T 2r10_A 96 DIFKD-FIKLPSRKFHPQYYYKIQQPMSINEIKSRDY----EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVM 170 (361)
T ss_dssp HHHGG-GSSCCCTTTCTTHHHHCSSCCCHHHHHTSCC----CSTTHHHHHHHHHHHHHHHHHHHBCSSSHHHHHHHHHHH
T ss_pred cccHH-hcCCCCcccCCChHhhcCCCcCHHHHHHHhh----ccCCCHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 45899 999999 9999999999999999999985 555589999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy4829 85 YFEHMLEKW 93 (120)
Q Consensus 85 ~f~~~~~~~ 93 (120)
+|+..|.+.
T Consensus 171 ~~~~~~~k~ 179 (361)
T 2r10_A 171 LIEFEVLKA 179 (361)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999998875
No 41
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=126.97 Aligned_cols=84 Identities=17% Similarity=0.326 Sum_probs=78.8
Q ss_pred cCCcccccCCCCC-CcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q psy4829 7 YHQELRLMRRKCS-DKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEY 85 (120)
Q Consensus 7 ~~~s~~~F~~pv~-~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~ 85 (120)
+..|.+ |...|+ -|+||. +.||+|.+|++||. ++.|+++++|..||.+||.||+.||.+||.||.+|..|++.
T Consensus 28 R~lsd~-F~~LPsk~pdYY~--k~Pi~l~~Ikkri~---~~~Y~sld~f~~D~~lmf~NAr~yN~e~S~IyeDAv~Lq~~ 101 (147)
T 3iu6_A 28 RCYSDS-LAEIPAVDPNFPN--KPPLTFDIIRKNVE---NNRYRRLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQF 101 (147)
T ss_dssp CBGGGG-GTTCCSSCTTSTT--SCCCCHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchHH-HhHCCCCCccccC--CCCcCHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 346788 999999 899998 99999999999999 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q psy4829 86 FEHMLEKWLPD 96 (120)
Q Consensus 86 f~~~~~~~~~~ 96 (120)
|.+...++..+
T Consensus 102 f~~~r~eL~~~ 112 (147)
T 3iu6_A 102 FIKIRDELCKN 112 (147)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999987654
No 42
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.76 E-value=1e-18 Score=121.96 Aligned_cols=88 Identities=15% Similarity=0.328 Sum_probs=78.3
Q ss_pred hhHHhcCCcccccCCCCCCcchHhhcCCcCCHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy4829 2 KQLIQYHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81 (120)
Q Consensus 2 ~~l~~~~~s~~~F~~pv~~p~Y~~~I~~PmdL~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~ 81 (120)
+.|.+|+.|+| |... .++.||||++|++||+ ++.|.|+.+|+.||.+||.||..+|++++.+.+++..
T Consensus 85 ~~L~~~~~s~~-~~~y--------~~k~PmDL~~i~kKl~---~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~ 152 (183)
T 3lqh_A 85 TALLNSRTTSH-LLRY--------RQQQPLDLEGVKRKMD---QGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSM 152 (183)
T ss_dssp HHHHTCHHHHH-HHTC--------CC--CCSHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccccHh-hhhh--------hhcCCccHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhH
Confidence 46778899999 8773 2699999999999999 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCC
Q psy4829 82 LEEYFEHMLEKWLPDYAYDD 101 (120)
Q Consensus 82 L~~~f~~~~~~~~~~~~~~~ 101 (120)
|+.+|++++++++|-...-+
T Consensus 153 l~~~f~~~l~~vfpwf~~~~ 172 (183)
T 3lqh_A 153 VKSFFIRQMERVFPWFSVKK 172 (183)
T ss_dssp HHHHHHHHHHHHCTTSCGGG
T ss_pred HHHHHHHHHHHHCCCCCccc
Confidence 99999999999999866543
No 43
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=51.58 E-value=8.5 Score=16.83 Aligned_cols=16 Identities=13% Similarity=0.497 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHH
Q psy4829 47 GYKTIVQFISDIRLIF 62 (120)
Q Consensus 47 ~Y~s~~~f~~D~~li~ 62 (120)
.-.|++.|..|+++|-
T Consensus 6 qvDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 6 QVDSVQRWMEDLKLMT 21 (26)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 3457889999998873
No 44
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=51.01 E-value=26 Score=20.82 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy4829 34 DVVRWRLNPSHPEGYKTIVQFISDIRLIFKNA 65 (120)
Q Consensus 34 ~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na 65 (120)
..|...+. +|.|.|..++++|.-..+..-
T Consensus 16 ~~i~~~V~---sG~Y~s~SEviR~~lR~l~~r 44 (88)
T 3kxe_C 16 AFIDSQVA---DGRYGSASEVIRAGLRLLEEN 44 (88)
T ss_dssp HHHHHHHT---TTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCCCCCHHHHHHHHHHHHHHH
Confidence 46788888 799999999999987777654
No 45
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=26.78 E-value=68 Score=20.62 Aligned_cols=33 Identities=12% Similarity=0.096 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4829 34 DVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYY 69 (120)
Q Consensus 34 ~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn 69 (120)
+.|.++|+ .+.+.|.++|-..+.+-..|.-.+-
T Consensus 33 ~qIAdkLR---Gr~F~sFd~FR~afW~eVs~DpeL~ 65 (131)
T 2jb0_B 33 DRIANKLR---DKEFKSFDDFRKKFWEEVSKDPELS 65 (131)
T ss_dssp HHHHHHHT---TCEESSHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHc---CCcCCCHHHHHHHHHHHHhcCHHHH
Confidence 67999999 6999999999999988877765543
No 46
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=26.65 E-value=68 Score=20.69 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=27.9
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhhhc
Q psy4829 34 DVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYY 69 (120)
Q Consensus 34 ~~I~~kl~~~~~~~Y~s~~~f~~D~~li~~Na~~yn 69 (120)
+.|.++|+ .+.+.|.++|-..+.+-..|.-.+-
T Consensus 36 ~~IAdkLR---Gr~F~sFd~FR~afW~eVs~DpeL~ 68 (134)
T 1fr2_B 36 DRIADKLR---DKEFKSFDDFRKAVWEEVSKDPELS 68 (134)
T ss_dssp HHHHHHHT---TCEESSHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhc---CCcCCCHHHHHHHHHHHHhcCHHHH
Confidence 67999999 6999999999999988877765543
No 47
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=22.30 E-value=78 Score=19.11 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHH
Q psy4829 48 YKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLE 91 (120)
Q Consensus 48 Y~s~~~f~~D~~li~~Na~~yn~~~s~~~~~a~~L~~~f~~~~~ 91 (120)
+.++ +|..=++|+|.|...+.+......+.-.++.+.....+.
T Consensus 32 l~~~-eF~aIlrL~F~hi~~~~~~~~f~~~~i~~l~~~~~~~~G 74 (94)
T 3b4s_A 32 LEDS-EFLAILRLLFHHIVTSESAHEFAANGIDRLYKMVESQFG 74 (94)
T ss_dssp TTSH-HHHHHHHHHHHHHHHSCCHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCH-HHHHHHHHHHHHHHccCCccHHHHhHHHHHHHHHHHHhC
Confidence 3444 599999999998887766544444455555555544443
No 48
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=22.22 E-value=9.4 Score=17.08 Aligned_cols=14 Identities=29% Similarity=0.529 Sum_probs=11.1
Q ss_pred CcchHhhcCCcCCH
Q psy4829 20 DKGYHEKVKNPMSF 33 (120)
Q Consensus 20 ~p~Y~~~I~~PmdL 33 (120)
+|.|+--|..|+++
T Consensus 6 vpeyfvgigtpisf 19 (26)
T 1pp5_A 6 VPEYFVGIGTPISF 19 (26)
T ss_dssp EECCCSSSSCCCSE
T ss_pred CcceeEecCCCeEE
Confidence 57888888888865
Done!