RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4829
(120 letters)
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 76.2 bits (188), Expect = 3e-19
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +KNPM ++ RL Y F++D RLIF+N + + + L
Sbjct: 52 YYKIIKNPMDLSTIKKRLQ-EDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKL 110
Query: 83 EEYFEHMLEKWLPDYAY 99
E YFE +L+ P+ +
Sbjct: 111 ENYFEELLKNLYPEKRF 127
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 76.2 bits (187), Expect = 1e-18
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 21 KGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAK 80
Y++ +KNPM ++ RL Y F++D RLIF+N + + +
Sbjct: 111 PDYYKIIKNPMDLSTIKKRLQ-EDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGI 169
Query: 81 NLEEYFEHMLEKWLP 95
LE YFE +L+ P
Sbjct: 170 KLENYFEELLKNLYP 184
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 74.9 bits (183), Expect = 3e-18
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 1/98 (1%)
Query: 2 KQLIQYHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLI 61
L + L + ++ + ++R RL Y + +F D+ +
Sbjct: 86 LALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145
Query: 62 FKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPDYAY 99
FK + + L+ +FE + + D +
Sbjct: 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTKF 182
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 66.4 bits (162), Expect = 4e-15
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + R+ + Y+ + +F++D+ IF N Y Y A+ L
Sbjct: 105 YYGVIKEPMDLATMEERVQRRY---YEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVL 161
Query: 83 EEYFEHMLEK 92
E +F L+
Sbjct: 162 ESFFVQKLKG 171
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 64.6 bits (158), Expect = 7e-15
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V P+ ++ +L Y + +D +L+F NA YY EY A L
Sbjct: 44 YYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKL 100
Query: 83 EEYFEHMLEKWLPD 96
+ + +++
Sbjct: 101 WDLYLRTRNEFVQK 114
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 64.3 bits (157), Expect = 1e-14
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E ++ P+ F ++ R+ Y+++ D+ L+ NA + + Q Y D+ L
Sbjct: 52 YYELIRKPVDFKKIKERIRNHK---YRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVL 108
Query: 83 EEYFEHMLEK 92
+ F+ +
Sbjct: 109 QSVFKSARQS 118
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 64.4 bits (157), Expect = 1e-14
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 4/96 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y E +K PM V +++ + Y T F+ DI LI NA Y D ++
Sbjct: 40 YLEVIKEPMDLSTVITKIDKHN---YLTAKDFLKDIDLICSNALEYNPDKDPGDKIIRHR 96
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGELSEPSAKRLRRG 118
+ + D + E G
Sbjct: 97 ACTLKDTAHAIIAAE-LDPEFNKLCEEIKESGPSSG 131
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 63.1 bits (154), Expect = 3e-14
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + VKNPM ++ +L+ Y+ Q++ D+ L+F NA++Y KT + Y L
Sbjct: 47 YFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKL 103
Query: 83 EEYFEHMLEKWLPDYA 98
E FE ++ +
Sbjct: 104 AEVFEQEIDPVMQSLG 119
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 65.9 bits (160), Expect = 4e-14
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V +PM+ +V+ L Y I FI D+ L+F+NA ++ + Y DA L
Sbjct: 196 YYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 252
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGELSEPSAKR 114
YF ++++K D + GE++ K
Sbjct: 253 TNYFNYLIQKEFFPELQDLNERGEINLEFDKF 284
Score = 50.5 bits (120), Expect = 1e-08
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ K++ PMS + ++ R E F+ D+ L+ KN Y ++ +
Sbjct: 63 YYYKIQQPMSINEIKSRDY----EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQV 118
Query: 83 EEYFEH 88
E
Sbjct: 119 VMLIEF 124
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 62.8 bits (153), Expect = 4e-14
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+EK+ +P+ + ++ + YKT+ F +D+ +F+NA YY + D L
Sbjct: 48 YYEKISDPLDLITIEKQILTGY---YKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRL 104
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGE 106
+ + + + D + GE
Sbjct: 105 RKAYYNARHEASAQ---IDEIVGE 125
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 62.3 bits (152), Expect = 5e-14
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM ++ RL ++ Y + I D +F N ++Y D A+ L
Sbjct: 56 YYKIIKTPMDMGTIKKRLENNY---YWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEAL 112
Query: 83 EEYFEHMLEK 92
E+ F + +
Sbjct: 113 EKLFLQKINE 122
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 62.0 bits (151), Expect = 6e-14
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K P+ + R+ YK+I DI L+ KNA Y Q + DA ++
Sbjct: 47 YYAIIKEPIDLKTIAQRIQNGS---YKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSI 103
Query: 83 EEYFEHMLEK 92
++ F +
Sbjct: 104 KKIFYMKKAE 113
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 61.9 bits (151), Expect = 7e-14
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K PM F +R +L+ Y + F D+RL+F N + N+
Sbjct: 46 YKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNM 102
Query: 83 EEYFEHMLEK 92
+YFE
Sbjct: 103 RKYFEKKWTD 112
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 62.5 bits (152), Expect = 8e-14
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + PM ++ + Y I D++L+F+NA Y + Q Y+DA L
Sbjct: 64 YYKIILEPMDLKIIEHNIRNDK---YAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL 120
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGELS 108
E+ + ++ P DD +
Sbjct: 121 EKLLKEKRKELGPLPDDDDMASPAEN 146
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 62.0 bits (151), Expect = 8e-14
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ +K PM + +R + + Y+ I + D ++F NA Y Y DA L
Sbjct: 54 YYLTIKKPMDMEKIRSHMMANK---YQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVL 110
Query: 83 EEYFEHMLEK 92
+
Sbjct: 111 HKVLLETRRD 120
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 62.0 bits (151), Expect = 8e-14
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM ++ +L Y+ +F +D+RL+F N + Y + + A+ L
Sbjct: 60 YCDIIKHPMDMSTIKSKLEARE---YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 116
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 117 QDVFEMRFAK-MPD 129
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 62.9 bits (153), Expect = 8e-14
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +KNPMSF ++ +L Y +F+ D++LIF N +Y KN+
Sbjct: 56 YYDVIKNPMSFSCIKTKLKKGQ---YAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNI 112
Query: 83 EEYFEHMLEK 92
E YF + L
Sbjct: 113 ETYFNNQLIV 122
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 62.0 bits (151), Expect = 9e-14
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E ++ P+ F ++ R+ Y+++ D+ L+ +NA + + Y D+ L
Sbjct: 51 YYELIRKPVDFKKIKERIRNHK---YRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVL 107
Query: 83 EEYFEHMLEK 92
+ F + +K
Sbjct: 108 QSVFTSVRQK 117
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 62.4 bits (152), Expect = 1e-13
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
YH+ +K PM ++ RL ++ Y + + D +F N ++Y TD A+ L
Sbjct: 67 YHKIIKQPMDMGTIKRRLENNY---YWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTL 123
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGELSEPSAKR 114
E+ F +K + L + + S K+
Sbjct: 124 EKIFL---QKVASMPQEEQELVVTIPKNSHKK 152
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 64.8 bits (157), Expect = 1e-13
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E V +PM+ +V+ L Y I FI D+ L+F+NA ++ + Y DA L
Sbjct: 246 YYEIVHSPMALSIVKQNLEIGQ---YSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGELSEPSAKR 114
YF ++++K D + GE++ K
Sbjct: 303 TNYFNYLIQKEFFPELQDLNERGEINLEFDKF 334
Score = 52.5 bits (125), Expect = 2e-09
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+ K++ PMS + ++ R E F+ D+ L+ KN Y ++ +
Sbjct: 113 YYYKIQQPMSINEIKSRDY----EYEDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQV 168
Query: 83 EEYFEHMLEKWLPDYAYD 100
E + K
Sbjct: 169 VMLIEFEVLKAKNLKRNY 186
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 61.5 bits (150), Expect = 1e-13
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + +K+PM ++ +L Y+ +F +D+RL+F N + Y + + A+ L
Sbjct: 47 YCDIIKHPMDMSTIKSKLESRE---YRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKL 103
Query: 83 EEYFEHMLEKWLPD 96
++ FE K +PD
Sbjct: 104 QDVFEMRFAK-MPD 116
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 63.0 bits (152), Expect = 2e-13
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 17/94 (18%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDA--- 79
Y++ +K PM V+ +L H + Y+ F++D+RLIFKN + A
Sbjct: 113 YYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQ 172
Query: 80 --------------KNLEEYFEHMLEKWLPDYAY 99
K + YFE L + D +
Sbjct: 173 EINLKADSEVAQAGKAVALYFEDKLTEIYSDRTF 206
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 61.2 bits (149), Expect = 2e-13
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++++K P+S +R +L Y+T+ D+ L+F+NA Y Y L
Sbjct: 56 YYQQIKMPISLQQIRTKLKNQE---YETLDHLECDLNLMFENAKRYNVPNSAIYKRVLKL 112
Query: 83 EEYFEHMLEK 92
++ + ++
Sbjct: 113 QQVMQAKKKE 122
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 60.8 bits (148), Expect = 2e-13
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM + +L + Y+ + FI D RL+F N +Y + Y A L
Sbjct: 46 YYDFIKEPMDLSTMEIKLESNK---YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRL 102
Query: 83 EEYFEHMLEKWLPDYAYD 100
E++F + +++ +P+Y++
Sbjct: 103 EKFFNNKVKE-IPEYSHL 119
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 59.7 bits (145), Expect = 7e-13
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y + +K PM F ++ L Y F D LI N Y AK Y A
Sbjct: 39 DYLDHIKKPMDFFTMKQNLEAYR---YLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVR 95
Query: 82 LEEYFEHMLEK 92
L E +L +
Sbjct: 96 LREQGGAVLRQ 106
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 58.8 bits (143), Expect = 9e-13
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y+E ++ P+ + RL + Y T F++D++ + N Y + A L
Sbjct: 40 YYEVIRFPIDLKTMTERLRSRY---YVTRKLFVADLQRVIANCREYNPPDSEYCRCASAL 96
Query: 83 EEYFEHMLEK 92
E++F L++
Sbjct: 97 EKFFYFKLKE 106
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 58.9 bits (143), Expect = 1e-12
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVY-YAKTDQEYSDAKN 81
Y + + PM F VR L+ + Y + ++F DIRLIF NA Y K + YS
Sbjct: 43 YRDIIDTPMDFGTVRETLDAGN---YDSPLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLR 99
Query: 82 LEEYFEHMLEKWLPDY 97
L FE ++K D+
Sbjct: 100 LSALFEEKMKKISSDF 115
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 60.7 bits (147), Expect = 2e-12
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 10/98 (10%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + NPM + +R ++ Y++ F+ D+ LI N+ Y Q A+ +
Sbjct: 170 YYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 226
Query: 83 EEYFEHMLEKWLPDYAYDDSLDGELSEPSAKRLRRGQE 120
L ++ +L + E
Sbjct: 227 VNVCYQTLTEYDEHLT-------QLEKDICTAKEAALE 257
Score = 49.2 bits (117), Expect = 3e-08
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + PM +R + Y + +F + LI KN+ Y ++++
Sbjct: 47 YYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNSATYNGPKHSLTQISQSM 103
Query: 83 EEYFEHMLEKWLPDYAY 99
+ + L++ A
Sbjct: 104 LDLCDEKLKEKEDKLAR 120
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 58.6 bits (142), Expect = 2e-12
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVY-YAKTDQEYSDAK 80
Y + + PM F VR L + Y++ ++ D+RLIF N+ Y +K + YS +
Sbjct: 53 DYRDIIDTPMDFATVRETLEAGN---YESPMELCKDVRLIFSNSKAYTPSKRSRIYSMSL 109
Query: 81 NLEEYFEHMLEKWLPDY 97
L +FE + L DY
Sbjct: 110 RLSAFFEEHISSVLSDY 126
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 60.4 bits (146), Expect = 3e-12
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + NPM + +R ++ Y++ F+ D+ LI N+ Y Q A+ +
Sbjct: 203 YYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 259
Query: 83 EEYFEHMLEKWLPDYA 98
L ++
Sbjct: 260 VNVCYQTLTEYDEHLT 275
Score = 48.1 bits (114), Expect = 7e-08
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + PM +R + Y + +F + LI KN+ Y ++++
Sbjct: 80 YYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNSATYNGPKHSLTQISQSM 136
Query: 83 EEYFEHMLEKWLPDYAY 99
+ + L++ A
Sbjct: 137 LDLCDEKLKEKEDKLAR 153
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 57.7 bits (140), Expect = 3e-12
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
GY +K+PM F ++ ++ + Y++I + + +L+ NA +Y Y AK
Sbjct: 40 GYSMIIKHPMDFSTMKEKIKNND---YQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKK 96
Query: 82 LEEYFEHMLEKWLPDY 97
L +L + ++
Sbjct: 97 LLHSGMKILSQERLEH 112
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 57.7 bits (140), Expect = 3e-12
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ +K PM + +LN Y T +F++D++ +F+N Y ++ + + NL
Sbjct: 49 YYQIIKAPMDISSMEKKLNGGL---YCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNL 105
Query: 83 EEYFEHMLEK 92
E F + K
Sbjct: 106 ERCFHRAMMK 115
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 57.4 bits (139), Expect = 5e-12
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
GY +K+PM F ++ ++ + YK++ +F +D +L+ NA Y Y AK
Sbjct: 45 GYSMIIKHPMDFGTMKDKIVANE---YKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKK 101
Query: 82 LEEYFEHMLEK 92
+ M+ K
Sbjct: 102 ILHAGFKMMSK 112
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 58.1 bits (139), Expect = 7e-12
Identities = 13/91 (14%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 12 RLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK 71
L+ + + + + P+ + V+ +++ + Y ++++F DI I + A
Sbjct: 86 ALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGN---YTSVLEFSDDIVKIIQAAINSDGG 142
Query: 72 TDQEYSDAKNLEEYFEHMLEKWLPDYAYDDS 102
+ ++ +F +E+ P ++ S
Sbjct: 143 QPEIKKANSMVKSFFIRQMERVFPWFSVKKS 173
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 56.3 bits (136), Expect = 1e-11
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y + +K+PM F +R RL YK + +F D LI N Y A+ Y A
Sbjct: 45 DYLDHIKHPMDFATMRKRLEAQG---YKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVR 101
Query: 82 LEEYFEHMLEK 92
L + +L +
Sbjct: 102 LRDQGGVVLRQ 112
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 56.3 bits (136), Expect = 1e-11
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQE----YS 77
Y +K PM V +++ Y T+ ++ DI LI NA Y D
Sbjct: 42 DYVTVIKQPMDLSSVISKIDLHK---YLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRH 98
Query: 78 DAKNLEEYFEHMLEKWLP 95
A L + ++++ L
Sbjct: 99 RACALRDTAYAIIKEELD 116
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 56.4 bits (136), Expect = 3e-11
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y++ + NPM + +R ++ Y++ F+ D+ LI N+ Y Q A+
Sbjct: 62 DYYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYNGPESQYTKTAQE 118
Query: 82 LEEYFEHMLEK 92
+ L +
Sbjct: 119 IVNVCYQTLTE 129
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 53.3 bits (128), Expect = 2e-10
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 17 KCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEY 76
+ + K P++FD++R + + Y+ + F + + + A + Y
Sbjct: 36 EIPAVDPNFPNKPPLTFDIIRKNVENNR---YRRLDLFQEHMFEVLERARRMNRTDSEIY 92
Query: 77 SDAKNLEEYFEHMLEK 92
DA L+++F + ++
Sbjct: 93 EDAVELQQFFIKIRDE 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.009
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%)
Query: 2 KQLIQYHQEL--RLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPS--HPEGYKTIVQFISD 57
LI++ E L+R + + +++ W NPS + Y + IS
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQG-----LNILEWLENPSNTPDKDYLLSI-PIS- 237
Query: 58 IRLIFKNAFVYYAKT 72
LI +Y T
Sbjct: 238 CPLIGVIQLAHYVVT 252
Score = 26.9 bits (59), Expect = 2.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 76 YSDAKNLEEYFEHMLEKWLPDYAYDDSLDGELSEPSAK 113
+ A L+E F +L + +A DD EP+
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADD-------EPTTP 57
Score = 26.6 bits (58), Expect = 2.8
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 81 NLEEYFEHMLEKWLPDYAYDD--SLDGELSEPSAKRLRR 117
N ++YFE + + L Y L G+L + SA+ L
Sbjct: 165 NTDDYFEELRD--L----YQTYHVLVGDLIKFSAETLSE 197
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase,
alternative splicing; HET: UD1; 1.90A {Homo sapiens}
SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Length = 505
Score = 29.7 bits (66), Expect = 0.20
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 12 RLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK 71
++ +H K D + P P G K + +F+ DI K VY
Sbjct: 340 DVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIK-MEKFVFDIFQFAKKFVVYEVL 398
Query: 72 TDQEYSDAKN 81
+ E+S KN
Sbjct: 399 REDEFSPLKN 408
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A
{Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19
c.37.1.19
Length = 780
Score = 29.1 bits (66), Expect = 0.35
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 75 EYSDAKNLEEYFEHMLEKWLPDY 97
+ + K+ E +E++ ++ P++
Sbjct: 592 DKLNVKSAVEMYEYLSKEVFPEF 614
>2y96_A Dual specificity phosphatase DUPD1; hydrolase; 2.38A {Homo sapiens}
Length = 219
Score = 26.6 bits (59), Expect = 2.1
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 1 MKQLIQYHQELRLMRRK 17
+KQL + ++L RR+
Sbjct: 189 LKQLRELDKQLVQQRRR 205
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation,
lyase-RNA complex; HET: FHU; 2.10A {Thermotoga maritima}
SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Length = 309
Score = 26.0 bits (58), Expect = 2.8
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 77 SDAKNLEEYFEHMLEKWL--PDYAYDDSLDGELSEPSAKRLRRGQ 119
++ N+ E +E + + + + + S K + G
Sbjct: 202 EESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTKMILNGS 246
>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A
{Haemonchus contortus}
Length = 204
Score = 26.2 bits (58), Expect = 3.1
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 51 IVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPDY 97
I D + F DQ A ++ FE +K+
Sbjct: 91 IADQFKDFLNEVRPYFKVLLGMDQGDLKAL-EKDVFEPARQKFFTIV 136
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Length = 250
Score = 26.2 bits (57), Expect = 3.4
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 64 NAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPD 96
N F Y K D L Y++ +++K+ P
Sbjct: 215 NKFDLYTKCPDLP-DVDKLRPYYQGLIDKYCPG 246
>3emu_A Leucine rich repeat and phosphatase domain containing protein;
structural genomics, hydrolase, PSI-2, protein structure
initiative; 2.30A {Entamoeba histolytica}
Length = 161
Score = 25.3 bits (56), Expect = 4.3
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 1 MKQLIQYHQELRLMRRKCSDKGYH 24
+ QL + ++L M + +H
Sbjct: 138 ILQLKLFEKKLEKMNSEGHHHHHH 161
>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI,
protein structure initiative; 3.00A {Caenorhabditis
elegans}
Length = 208
Score = 25.4 bits (56), Expect = 5.7
Identities = 6/47 (12%), Positives = 9/47 (19%)
Query: 51 IVQFISDIRLIFKNAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPDY 97
+ D FK K E+F +
Sbjct: 92 VHDLFKDFLAEFKKFAAERRSGKSAEEVEKFRSEFFLPARNTYFNIL 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.7
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 75 EYSDAKNLEEYFEHMLEKWLPDYA 98
E K L+ L+ + D A
Sbjct: 18 EKQALKKLQA----SLKLYADDSA 37
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
specificity phosphatase, DUSP13, testis and skeletal
muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Length = 205
Score = 25.1 bits (55), Expect = 5.8
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 1 MKQLIQYHQELRLMRRKCSDKGYHE 25
++QL L + + +H
Sbjct: 181 LRQLQVLDNRLGRETGRFAHHHHHH 205
>2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A
{Nicotiana tabacum}
Length = 453
Score = 25.3 bits (55), Expect = 6.7
Identities = 5/19 (26%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 31 MSFDV-VRWRLNPSHPEGY 48
R + NP P Y
Sbjct: 300 FGCAADCRAQFNPPLPPSY 318
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein
dual-specificity phosphatase, inhibitor; HET: STT; 1.90A
{Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Length = 183
Score = 25.0 bits (55), Expect = 6.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 1 MKQLIQYHQELRLMRR 16
+ QL Q + L +
Sbjct: 165 LAQLCQLNDRLAKEGK 180
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold,
oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP:
a.211.1.4 PDB: 3bxd_A*
Length = 289
Score = 25.1 bits (54), Expect = 7.0
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 64 NAFVYYAKTDQEYSDAKNLEEYFEHMLEKWLPD 96
N F Y K D ++L Y++ +++K+ P
Sbjct: 254 NKFDLYTKCPDLP-DVESLRPYYQGLIDKYCPG 285
>2xvy_A Chelatase, putative; metal binding protein; HET: HEM; 1.70A
{Desulfovibrio vulgaris} PDB: 2xvx_A* 2xvz_A*
Length = 269
Score = 24.9 bits (54), Expect = 8.2
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 43 SHPEGYKTIVQFISDIRLIFKNAFVYYAKT 72
S E + + +R + V +A T
Sbjct: 20 SVEEARPALDKMGDRVRAAHPDIPVRWAYT 49
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 24.7 bits (54), Expect = 9.0
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 1 MKQLIQYHQELRLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTI 51
M QL+QY E+ + ++ L+P Y T
Sbjct: 134 MGQLLQYESEILPSTPNPQPPSCQGEAAGSSLIGHLQ-TLSPDMQGAYCTF 183
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES;
1.50A {Homo sapiens}
Length = 165
Score = 24.5 bits (54), Expect = 10.0
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 1 MKQLIQYHQELRLMRRKCSDKGYHE 25
+QL ++ + R+ + Y E
Sbjct: 134 QRQLQEFEKHEVHQYRQWLKEEYGE 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,958,979
Number of extensions: 105188
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 73
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)