RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4829
(120 letters)
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 55.7 bits (134), Expect = 6e-12
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y + VKNPM ++ +L+ Y+ Q++ D+ L+F NA++Y KT + Y L
Sbjct: 42 YFDIVKNPMDLSTIKRKLDTGQ---YQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKL 98
Query: 83 EEYFEHMLEKWLPD 96
E FE ++ +
Sbjct: 99 AEVFEQEIDPVMQS 112
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 56.1 bits (135), Expect = 8e-12
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + PM +R + Y + +F + LI KN+ Y ++++
Sbjct: 59 YYKIITRPMDLQTLRENVRKRL---YPSREEFREHLELIVKNSATYNGPKHSLTQISQSM 115
Query: 83 EEYFEHMLEK 92
+ + L++
Sbjct: 116 LDLCDEKLKE 125
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 55.0 bits (132), Expect = 2e-11
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 23 YHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
Y++ + NPM + +R ++ Y++ F+ D+ LI N+ Y Q A+ +
Sbjct: 43 YYKVIVNPMDLETIRKNISKHK---YQSRESFLDDVNLILANSVKYNGPESQYTKTAQEI 99
Query: 83 EEYFEHMLEKW 93
L ++
Sbjct: 100 VNVCYQTLTEY 110
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 53.4 bits (128), Expect = 5e-11
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y++ +K PM + +L + Y+ + FI D RL+F N +Y + Y A
Sbjct: 35 DYYDFIKEPMDLSTMEIKLESNK---YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANR 91
Query: 82 LEEYFEHMLEKWLPDYAY 99
LE++F + +++ +P+Y++
Sbjct: 92 LEKFFNNKVKE-IPEYSH 108
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 52.3 bits (125), Expect = 9e-11
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
Y+E ++ P+ + RL + Y T F++D++ + N Y + A
Sbjct: 34 DYYEVIRFPIDLKTMTERLRSRY---YVTRKLFVADLQRVIANCREYNPPDSEYCRCASA 90
Query: 82 LEEYFEHMLEK 92
LE++F L++
Sbjct: 91 LEKFFYFKLKE 101
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 50.0 bits (119), Expect = 1e-09
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 22 GYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKN 81
GY+E ++ PM + RL + Y + F++D++ +F N Y + Y A
Sbjct: 45 GYYEVIRFPMDLKTMSERLKNRY---YVSKKLFMADLQRVFTNCKEYNPPESEYYKCANI 101
Query: 82 LEEYFEHMLEK 92
LE++F +++
Sbjct: 102 LEKFFFSKIKE 112
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase
{Human (Homo sapiens), AGX1 [TaxId: 9606]}
Length = 501
Score = 26.1 bits (57), Expect = 1.3
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 12 RLMRRKCSDKGYHEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAK 71
++ +H K D + P P G K + +F+ DI K VY
Sbjct: 340 DVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNGIK-MEKFVFDIFQFAKKFVVYEVL 398
Query: 72 TDQEYSDAKN 81
+ E+S KN
Sbjct: 399 REDEFSPLKN 408
>d1j5wa_ d.104.1.1 (A:) Glycyl-tRNA synthetase (GlyRS) alpha chain
{Thermotoga maritima [TaxId: 2336]}
Length = 281
Score = 24.7 bits (54), Expect = 3.0
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 61 IFKNAFVYYAKTDQEYSDAKNLEEYFE-------HMLEKWLPDYAYD 100
+F ++ + E ++ L +F+ ++EK L AYD
Sbjct: 188 VFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYD 234
>d1w36c3 c.52.1.25 (C:818-1121) Exodeoxyribonuclease V beta chain
(RecC), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 304
Score = 24.6 bits (53), Expect = 3.4
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 58 IRLIFKNAFVYYAKTDQEYSDAKNLEEY-FEHMLEKWLPDYAYDDSLDGELSEPSAKRLR 116
+ ++ ++ + +DA ++ + K+L Y + + GE + +RL
Sbjct: 218 LLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 277
Query: 117 RGQE 120
R
Sbjct: 278 RQLT 281
>d2cfua1 d.106.1.3 (A:530-655) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 24.1 bits (52), Expect = 3.9
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 31 MSFDVVRWRLNPSHPEGYKTIVQFI-----SDIRLIFKNAFVYYAKTDQE 75
+ FD + RL+ EG + + L KN+ + + Q
Sbjct: 13 LLFDYLGVRLDAGAAEGKALSINLRLPDIGENYLLELKNSHLNNLRGVQS 62
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium
symbiosum [TaxId: 1512]}
Length = 255
Score = 23.5 bits (50), Expect = 7.5
Identities = 9/59 (15%), Positives = 18/59 (30%)
Query: 24 HEKVKNPMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAFVYYAKTDQEYSDAKNL 82
K N V + ++ + T + S + + + A + Y NL
Sbjct: 174 PSKAVNAGGVLVSGFEMSQNSERLSWTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNL 232
>d1xqma_ d.22.1.1 (A:) GFP-like non-fluorescent chromoprotein
FP595 {Anemonia sulcata [TaxId: 6108]}
Length = 230
Score = 23.5 bits (51), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 30 PMSFDVVRWRLNPSHPEGYKTIVQFISDIRLIFKNAF 66
P +F + L+ S G KT ++++S I FK +F
Sbjct: 50 PFAFHI----LSTSCMYGSKTFIKYVSGIPDYFKQSF 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,597
Number of extensions: 21971
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 16
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)