BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4830
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 157 bits (397), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 107/210 (50%), Gaps = 36/210 (17%)
Query: 3 LHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIP 62
L G KPY C C SF R +L H RTHTGE+P++C C K FS K L H+R H
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 63 YIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHT 122
Y C C +F+ + NL H RTHTGE+PY C C K FSQ + L H+R HT
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-----HT 129
Query: 123 EDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTG 182
+KPY C C +FSR+ L H RTHTG
Sbjct: 130 GEKPYKCPECGKSFSREDNL-------------------------------HTHQRTHTG 158
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+P++C C K F+++ +LN H+R HTG++
Sbjct: 159 EKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 110/207 (53%), Gaps = 36/207 (17%)
Query: 34 GERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERP 93
GE+P+ C C K FS+ L H+R H Y C C +F+ K++L H RTHTGE+P
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP 77
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVM 153
Y+C C K FSQ+++L H+R H T +KPY C C +FS+ +L
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTH-----TGEKPYACPECGKSFSQLAHL----------- 121
Query: 154 QPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+ H RTHTGE+P++C C K F+++ +L+TH+R HTGE+P
Sbjct: 122 --------------------RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP 161
Query: 214 YACDICDKRFAVKSYVTSHRWSHVGDK 240
Y C C K F+ + + H+ +H G K
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 137 bits (345), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 100/199 (50%), Gaps = 36/199 (18%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
Y C C +F+ +L H RTHTGE+PY+C C K FS K L H+R H T +K
Sbjct: 22 YACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTH-----TGEK 76
Query: 126 PYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERP 185
PY C C +FS++ L + H RTHTGE+P
Sbjct: 77 PYKCPECGKSFSQRANL-------------------------------RAHQRTHTGEKP 105
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
+ C C K F+Q + L H+R HTGE+PY C C K F+ + + +H+ +H G+KP+ C
Sbjct: 106 YACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCP 165
Query: 246 SCHLTFTSKSQFAVHLRTH 264
C +F+ + VH RTH
Sbjct: 166 ECGKSFSRRDALNVHQRTH 184
Score = 130 bits (328), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 87/148 (58%), Gaps = 5/148 (3%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ H+G KPY C C SF K L H RTHTGE+P++C C K FSQ++ L H+R H
Sbjct: 41 QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH 100
Query: 61 IPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYL 120
Y C C +F+ +L H RTHTGE+PY+C C K FS++ +L+TH+R
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT----- 155
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
HT +KPY C C +FSR+ L V+ T
Sbjct: 156 HTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 101/201 (50%), Gaps = 37/201 (18%)
Query: 90 GERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTV 149
GE+PY C C K FS+ L H+R H T +KPY C C +FS K+ L
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTH-----TGEKPYKCPECGKSFSDKKDL------- 65
Query: 150 LAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
H RTHTGE+P++C C K F+Q+++L H+R HT
Sbjct: 66 ------------------------TRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHT 101
Query: 210 GERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGA 269
GE+PYAC C K F+ +++ +H+ +H G+KP+ C C +F+ + H RT HT
Sbjct: 102 GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEK 160
Query: 270 NHVCNVCGRSFVRDSYLIRHQ 290
+ C CG+SF R L HQ
Sbjct: 161 PYKCPECGKSFSRRDALNVHQ 181
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 70/118 (59%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ H+G KPY C C SF ++ L H RTHTGE+P+ C C K FSQ + L H+R H
Sbjct: 69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128
Query: 61 IPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
Y C C +F+ + NL H RTHTGE+PY+C C K FS++ +LN H+R H
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 56/92 (60%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ H+G KPY C C SF + +L H RTHTGE+P++C C K FS++ L+TH+R H
Sbjct: 97 QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTH 156
Query: 61 IPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C +F+ + L VH RTHTG++
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 207 VHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
+ GE+PYAC C K F+ ++ H+ +H G+KP+ C C +F+ K H RT HT
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRT-HT 73
Query: 267 VGANHVCNVCGRSFVRDSYLIRHQ 290
+ C CG+SF + + L HQ
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQ 97
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKR---MHI 61
SG+ C C F K YL++H R HTGE+PF+C C K + +K L H+ M+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 62 PYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH 112
+ C C TF + L +HM +HTGE PY+C C+++F QK L +H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 34/144 (23%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
C C F +K L+VH R HTGE+P++C C K + +K +L H+ N ++ ++ +
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEA--RNCMNRSEQVF 67
Query: 128 HCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQ 187
C+ C F R+ L ++HM +HTGE P++
Sbjct: 68 TCSVCQETFRRRMEL-------------------------------RLHMVSHTGEMPYK 96
Query: 188 CAVCSKRFTQKSSLNTHK-RVHTG 210
C+ CS++F QK L +H ++H+G
Sbjct: 97 CSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 161 TWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKR---VHTGERPYACD 217
T KFL+ + +VH R HTGE+PF+C C K + +K +L H+ ++ E+ + C
Sbjct: 12 TCHKKFLSKYYL-KVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Query: 218 ICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
+C + F + + H SH G+ P+ C+SC F K H+ H+
Sbjct: 71 VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 33/144 (22%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
+G +C C+K+F K L H R HT +KP+ C C + RK+
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRK-----HTGEKPFECPKCGKCYFRKE-------- 49
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
+L H+ + E+ F C+VC + F ++ L H H
Sbjct: 50 --------------------NLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSH 89
Query: 209 TGERPYACDICDKRFAVKSYVTSH 232
TGE PY C C ++F K + SH
Sbjct: 90 TGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHV--- 237
+G +C C K+F K L H R HTGE+P+ C C K + K + H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQNK 292
++ F C+ C TF + + +H+ HT + C+ C + F++ L H K
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHM-VSHTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHM-RTHTG 34
M H+G PY C++C F +K L+ HM + H+G
Sbjct: 86 MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPY 94
E+P++C C K FSQ S L H+R H Y C C +F+ +L+ H RTHTGE+PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 95 QCEVCNKRFSQKSSLNTHKRIHIN 118
+C C K FS+ L+ H+R H N
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQN 85
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
E+P++C C K F+Q S+L H+R HTGE+PY C C K F+ S + H+ +H G+KP+
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 243 GCTSCHLTFTSKSQFAVHLRTH 264
C C +F+ + H RTH
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTH 83
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQY 66
KPY C C SF + L+ H RTHTGE+P++C C K FSQ S L H+R H Y
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 67 YCDACDATFTTKQNLEVHMRTHTGER 92
C C +F+ +L H RTH ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
Y C C +F+ NL+ H RTHTGE+PY+C C K FSQ S L H+R H T +K
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH-----TGEK 59
Query: 126 PYHCTGCDAAFSRKQYL 142
PY C C +FSR +L
Sbjct: 60 PYKCPECGKSFSRSDHL 76
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 31/117 (26%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE 183
+KPY C C +FS+ L Q H RTHTGE
Sbjct: 2 EKPYKCPECGKSFSQSSNL-------------------------------QKHQRTHTGE 30
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
+P++C C K F+Q S L H+R HTGE+PY C C K F+ +++ H+ +H K
Sbjct: 31 KPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGAN 270
E+PY C C K F+ S + H+ +H G+KP+ C C +F+ S H RTH T
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH-TGEKP 60
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
+ C CG+SF R +L RHQ
Sbjct: 61 YKCPECGKSFSRSDHLSRHQ 80
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ H+G KPY C C SF + L+ H RTHTGE+P++C C K FS+ L+ H+R H
Sbjct: 24 QRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
+ H+G KPY C C SF R +L H RTH ++
Sbjct: 52 QRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 5 SGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMH 60
S +P+ C C+ + + +L++H R HTGE+P+QC C +RFS+ L H+R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 61 IPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCE--VCNKRFSQKSSLNTHKRIH 116
+ C C F+ +L+ H RTHTGE+P+ C C K+F++ L H +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 181 TGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSH 236
+ +RPF CA C+KR+ + S L H R HTGE+PY CD C++RF+ + H+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 237 VGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCN--VCGRSFVRDSYLIRHQN 291
G KPF C +C F+ H RTH T C C + F R L+RH N
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTH-TGEKPFSCRWPSCQKKFARSDELVRHHN 117
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 4/95 (4%)
Query: 174 QVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
Q+H R HTGE+P+QC C +RF++ L H+R HTG +P+ C C ++F+ ++ +
Sbjct: 25 QMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKT 84
Query: 232 HRWSHVGDKPFGC--TSCHLTFTSKSQFAVHLRTH 264
H +H G+KPF C SC F + H H
Sbjct: 85 HTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 42/150 (28%)
Query: 89 TGERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLEV 144
+ +RP+ C CNKR+ + S L H R H T +KPY C C+ FSR L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH-----TGEKPYQCDFKDCERRFSRSDQL-- 54
Query: 145 NHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTH 204
+ H R HTG +PFQC C ++F++ L TH
Sbjct: 55 -----------------------------KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Query: 205 KRVHTGERPYACDI--CDKRFAVKSYVTSH 232
R HTGE+P++C C K+FA + H
Sbjct: 86 TRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 66/151 (43%), Gaps = 41/151 (27%)
Query: 62 PYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHINY 119
P++ Y C+ + +L++H R HTGE+PYQC+ C +RFS+ L H+R
Sbjct: 6 PFMCAY-PGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQR----- 59
Query: 120 LHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRT 179
HT KP+ C C FSR +L + H RT
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHL-------------------------------KTHTRT 88
Query: 180 HTGERPFQC--AVCSKRFTQKSSLNTHKRVH 208
HTGE+PF C C K+F + L H +H
Sbjct: 89 HTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC--VVCLKRFSQKSALNTHKR 58
+ H+G KP+ C C F R +L+ H RTHTGE+PF C C K+F++ L H
Sbjct: 58 QRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHN 117
Query: 59 MH 60
MH
Sbjct: 118 MH 119
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 7/86 (8%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF+QK++L+TH R+HTG++P+ C IC + F+ ++ + +H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTHHT 266
PF C C F + +H RT HT
Sbjct: 62 PFACDICGRKFAT-----LHTRTRHT 82
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 46/66 (69%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRW 234
H+R HTG++PFQC +C + F+Q++SLN H R HTGE+P+ACDIC ++FA T H
Sbjct: 24 THIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
Query: 235 SHVGDK 240
H+ K
Sbjct: 84 IHLRQK 89
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFSQK+ L+TH R+H + C C F+ + +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F+ + H +IH+
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIHL 86
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 7/74 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ K NL+ H+R HTG++P+QC +C + FSQ++SLN H R H T
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFS 137
+KP+ C C F+
Sbjct: 60 EKPFACDICGRKFA 73
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 38/124 (30%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFSQK++L+TH RIH T KP+ C C FS++ L
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH-----TGQKPFQCRICMRNFSQQASLNA---- 52
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 53 ---------------------------HIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Query: 209 TGER 212
++
Sbjct: 86 LRQK 89
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 211 ERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
ERPYAC + CD+RF+ K+ + +H H G KPF C C F+ ++ H+RTH T
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTH-TGE 60
Query: 269 ANHVCNVCGRSFV 281
C++CGR F
Sbjct: 61 KPFACDICGRKFA 73
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F ++ L H+RTHTGE+PF C +C ++F+ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF+Q SL H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFSQ +L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 236 HVGDK 240
H+ K
Sbjct: 85 HLRQK 89
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFSQ SL H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ +L H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFSR 138
+KP+ C C F+R
Sbjct: 60 EKPFACDICGRKFAR 74
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF+QK++L+TH R+HTG++P+ C IC + F+ + + H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTHHT 266
PF C C F + +H R HT
Sbjct: 62 PFACDICGRKFAT-----LHTRDRHT 82
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFSQK+ L+TH R+H + C C F+ L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F+ + + H +IH+
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIHL 86
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRW 234
H+R HTG++PFQC +C + F+Q + LN H R HTGE+P+ACDIC ++FA H
Sbjct: 24 THIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
Query: 235 SHVGDK 240
H+ K
Sbjct: 84 IHLRQK 89
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 69 DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYH 128
++CD F+ K NL+ H+R HTG++P+QC +C + FSQ + LN H R H T +KP+
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH-----TGEKPFA 64
Query: 129 CTGCDAAFS 137
C C F+
Sbjct: 65 CDICGRKFA 73
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 38/124 (30%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFSQK++L+TH RIH T KP+ C C FS Q+ +N
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIH-----TGQKPFQCRICMRNFS--QHTGLNQ-- 52
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + + H ++H
Sbjct: 53 ---------------------------HIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Query: 209 TGER 212
++
Sbjct: 86 LRQK 89
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 211 ERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
ERPYAC + CD+RF+ K+ + +H H G KPF C C F+ + H+RTH T
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTH-TGE 60
Query: 269 ANHVCNVCGRSFV 281
C++CGR F
Sbjct: 61 KPFACDICGRKFA 73
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F + L H+RTHTGE+PF C +C ++F+ + H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF+ S+L H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFS S L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 236 HVGDK 240
H+ K
Sbjct: 85 HLRQK 89
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 211 ERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
ERPYAC + CD+RF+ S +T H H G KPF C C F+ H+RTH T
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE 60
Query: 269 ANHVCNVCGRSFVRDSYLIRH 289
C++CGR F R RH
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFS S+L H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ NL H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFSR 138
+KP+ C C F+R
Sbjct: 60 EKPFACDICGRKFAR 74
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF++ + L H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 236 HVGDK 240
H+ K
Sbjct: 85 HLRQK 89
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFS+ + L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 211 ERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
ERPYAC + CD+RF+ + +T H H G KPF C C F+ H+RTH T
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-TGE 60
Query: 269 ANHVCNVCGRSFVRDSYLIRH 289
C++CGR F R RH
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFS+ + L H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ L H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFSR 138
+KP+ C C F+R
Sbjct: 60 EKPFACDICGRKFAR 74
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF++ + L H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 236 HVGDK 240
H+ K
Sbjct: 85 HLRQK 89
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFS+ + L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFS+ + L H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ +L H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFSR 138
+KP+ C C F+R
Sbjct: 60 EKPFACDICGRKFAR 74
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF++ L H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 236 HVGDK 240
H+ K
Sbjct: 85 HLRQK 89
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFS+ L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFS+ L H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ L H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFSR 138
+KP+ C C F+R
Sbjct: 60 EKPFACDICGRKFAR 74
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF++ L H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFS+ L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHL 86
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Query: 236 HV 237
H+
Sbjct: 85 HL 86
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 61 I 61
+
Sbjct: 86 L 86
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFS+ L H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 69 DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYH 128
++CD F+ L H+R HTG++P+QC +C + FS+ L TH R H T +KP+
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TGEKPFA 64
Query: 129 CTGCDAAFSR 138
C C F+R
Sbjct: 65 CDICGRKFAR 74
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF++ L H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
ERP+ C V C +RFS+ L H R+H + C C F+ +L H+RTHTGE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHI 117
P+ C++C ++F++ H +IH+
Sbjct: 61 PFACDICGRKFARSDERKRHTKIHL 85
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+R HTG++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H
Sbjct: 24 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 83
Query: 236 HV 237
H+
Sbjct: 84 HL 85
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 25 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Query: 61 I 61
+
Sbjct: 85 L 85
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 51/120 (42%), Gaps = 38/120 (31%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C E C++RFS+ L H RIH T KP+ C C FSR +L
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 49
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 50 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 66 YYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C ++CD F+ L H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 58
Query: 124 DKPYHCTGCDAAFSR 138
+KP+ C C F+R
Sbjct: 59 EKPFACDICGRKFAR 73
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
++ F C C + FT+ +L H+R HT ERPY CDIC K F + ++ HR+ H +KPF
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 243 GCTSCHLTFTSKSQFAVHLRTH 264
C C F AVH H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTED 124
++ C C FT NL +H RTHT ERPY C++C+K F ++ L H+ Y+H+++
Sbjct: 17 EFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR-----YIHSKE 71
Query: 125 KPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGN 159
KP+ C C F + + L V+ T + P+ +
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPY 94
++ F C C + F++ L H+R H Y CD C F + +L H H+ E+P+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 95 QCEVCNKRFSQKSSLNTHKRIHIN 118
+C+ C K F Q +L HK +H+
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLHMQ 98
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 155 PSLGNNTWSAKF----LTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
PS + KF T ++ +H RTHT ERP+ C +C K F ++ L H+ +H+
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSK 70
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHV 237
E+P+ C C K F + H+ H+
Sbjct: 71 EKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI 61
+ H+ +PY C C +F R+ +L H H+ E+PF+C C K F Q L HK +H+
Sbjct: 38 RTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 240 KPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
K F C C FT +H RTH T + C++C ++F R +L H+
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTH-TDERPYTCDICHKAFRRQDHLRDHR 65
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCE 97
F C +C K F + S L+TH +H Y C C F K +++ H HTGE+P++C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 98 VCNKRFSQKSSLNTHKRIHIN 118
VC K FSQ S+L TH R H
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
F C +C K F + S+L+TH +H+ RPY C C KRF KS + H + H G+KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 246 SCHLTFTSKSQFAVHLRTH 264
C F+ S H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRW 234
H+ H+ RP+ C C KRF QKS + H +HTGE+P+ C +C K F+ S + +H
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Query: 235 SHVG 238
H G
Sbjct: 79 KHTG 82
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCD 69
+ C C SF R L H+ H+ RP+ C C KRF QKS + H +H + C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 70 ACDATFTTKQNLEVHMRTHTG 90
C F+ NL H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
+ C C +F L H+ H+ RPY C+ C KRF QKS + H ++HT +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-----TFIHTGEK 56
Query: 126 PYHCTGCDAAFSRKQYL 142
P+ C C AFS+ L
Sbjct: 57 PHKCQVCGKAFSQSSNL 73
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ +HS +PY C C F +K ++ H HTGE+P +C VC K FSQ S L TH R H
Sbjct: 21 LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 3 LHSGNKPYHCTACDASFCRKPYLEIHMRTHTG 34
+H+G KP+ C C +F + L H R HTG
Sbjct: 51 IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 132 CDAAFSRKQYLEVNHTTVLAVMQPSLGNNT--WS-----AKFLTSLFSHQVHMRTHTGER 184
CD FS L V H T+ V P N+ W K + + H+R HTGE+
Sbjct: 31 CDRTFSTMHEL-VTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Query: 185 PFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDK 240
PF C C K F + +L HKR HTGE+P+ C+ CD+RFA S H H DK
Sbjct: 90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 28/109 (25%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDAC 71
C SF K L H+R HTGE+PF C P+ C
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPC---------------------PF-----PGC 98
Query: 72 DATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHIN 118
F +NL++H RTHTGE+P++CE C++RF+ S H +H +
Sbjct: 99 GKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTS 147
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 1 MKLHSGNKPYHC--TACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTH 56
+++H+G KP+ C C F R L+IH RTHTGE+PF+C C +RF+ S H
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Query: 57 KRMH 60
+H
Sbjct: 142 MHVH 145
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 187 QCAVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGC 244
+C K F K L H RVHTGE+P+ C C K FA + H+ +H G+KPF C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 245 --TSCHLTFTSKSQFAVHLRTH 264
C F + S H+ H
Sbjct: 124 EFEGCDRRFANSSDRKKHMHVH 145
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 43/80 (53%)
Query: 185 PFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
P +C VC K F++K L TH R HTG +PY C CD A S + H H ++PF C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 245 TSCHLTFTSKSQFAVHLRTH 264
C + SQ VHLR+H
Sbjct: 68 QICPYASRNSSQLTVHLRSH 87
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%)
Query: 9 PYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYC 68
P+ C C F RK L+ HMR HTG +P++C C + S+LN H R+H + C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 69 DACDATFTTKQNLEVHMRTHTGE 91
C L VH+R+HTG+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%)
Query: 37 PFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQC 96
P +C VC K FS+K L TH R H Y C CD +L H+R H+ ERP++C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 97 EVCNKRFSQKSSLNTHKRIHIN 118
++C S L H R H
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHR 233
+ HMR HTG +P++C C SSLN H R+H+ ERP+ C IC S +T H
Sbjct: 25 KTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Query: 234 WSHVGD 239
SH GD
Sbjct: 85 RSHTGD 90
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
C+ C F+ K L+ HMR HTG +PY+C+ C+ + SSLN H RIH ++++P+
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH-----SDERPF 65
Query: 128 HCTGCDAAFSRKQYLEVNHTTVLAVMQPSLG 158
C C A L V+ + PS G
Sbjct: 66 KCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 48/119 (40%), Gaps = 36/119 (30%)
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAV 152
P++CEVC K FS+K L TH R H T KPY C CD A + L
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCH-----TGVKPYKCKTCDYAAADSSSL---------- 52
Query: 153 MQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
H+R H+ ERPF+C +C S L H R HTG+
Sbjct: 53 ---------------------NKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
M+ H+G KPY C CD + L H+R H+ ERPF+C +C S L H R H
Sbjct: 28 MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
+++HS +P+ C C + L +H+R+HTG+
Sbjct: 56 LRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 176 HMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYAC--DICDKRFAVKSYVTS 231
H HTGE+PFQC C KRF+ +L TH R+HTG+RPY C D C+K+FA + + S
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 232 HRWSHVGDK 240
H +H K
Sbjct: 113 HILTHAKAK 121
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 165 KFLTSLFSHQVHMRTHT---GERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC--DIC 219
K T +F MR H G R CA C K F + S L H+ VHTGE+P+ C + C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 220 DKRFAVKSYVTSHRWSHVGDKPFGC--TSCHLTFTSKSQFAVHLRTHHTVGAN 270
KRF++ + +H H GD+P+ C C+ F + H+ TH N
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Query: 14 ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYC--DAC 71
C F + H+ TH G R C C K F + S L H+ +H + C + C
Sbjct: 12 GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 72 DATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIH 116
F+ NL H+R HTG+RPY C + CNK+F+Q ++L +H H
Sbjct: 71 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 6 GNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPY 63
G + + C C +F L+ H HTGE+PFQC C KRFS L TH R+H
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 90
Query: 64 IQYYC--DACDATFTTKQNLEVHMRTHTGERPYQ 95
Y C D C+ F NL+ H+ TH + Q
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ 124
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 41/144 (28%)
Query: 70 ACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
C F + H+ TH G R + C C K F + S L H+ +HT +KP+ C
Sbjct: 12 GCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQ-----LVHTGEKPFQC 65
Query: 130 T--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQ 187
T GC FS F+ + H+R HTG+RP+
Sbjct: 66 TFEGCGKRFSLD-------------------------------FNLRTHVRIHTGDRPYV 94
Query: 188 CAV--CSKRFTQKSSLNTHKRVHT 209
C C+K+F Q ++L +H H
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHA 118
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 243 GCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
GCT F S HL TH HVC CG++FV S L RHQ
Sbjct: 12 GCTK---MFRDNSAMRKHLHTHGP--RVHVCAECGKAFVESSKLKRHQ 54
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 191 CSKRFTQKSSLNTHKRVHTGERPYAC--DICDKRFAVKSYVTSHRWSHVGDKPFGCTSCH 248
C+K +T+ S L H R HTGE+PY C + CD RFA +T H H G KPF C C+
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 249 LTFTSKSQFAVHLRTH 264
+F+ A+H++ H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 9/83 (10%)
Query: 66 YYCD--ACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYLH 121
+YCD C +T +L+ H+RTHTGE+PY+C E C+ RF++ L H R H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH----- 70
Query: 122 TEDKPYHCTGCDAAFSRKQYLEV 144
T KP+ C C+ +FSR +L +
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLAL 93
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 31/109 (28%)
Query: 15 CDASFCRKPY-----LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCD 69
CD C K Y L+ H+RTHTGE+P++C +
Sbjct: 18 CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTW--------------------------E 51
Query: 70 ACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
CD F L H R HTG +P+QC VCN+ FS+ L H + H N
Sbjct: 52 GCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKR 58
++ H+G KPY CT CD F R L H R HTG +PFQC VC + FS+ L H +
Sbjct: 37 LRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Query: 59 MH 60
H
Sbjct: 97 RH 98
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 174 QVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
+ H+RTHTGE+P++C C RF + L H R HTG +P+ C +C++ F+ ++
Sbjct: 34 KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLAL 93
Query: 232 H 232
H
Sbjct: 94 H 94
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 38/112 (33%)
Query: 99 CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPS 156
C K +++ S L H R H T +KPY CT GCD F+R L
Sbjct: 23 CTKVYTKSSHLKAHLRTH-----TGEKPYKCTWEGCDWRFARSDEL-------------- 63
Query: 157 LGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H R HTG +PFQC VC++ F++ L H + H
Sbjct: 64 -----------------TRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
+G++ + C C K F+ KS + H MH+ Y C C F K +L HM+ HTG +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 93 PYQCEVCNKRFSQKSSLNTH 112
PY+C +C KRF + S + H
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
+G++ + C C K FT KS + H +H G RPY C +C K+F +K ++ H H G K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 241 PFGCTSCHLTFTSKSQFAVHL 261
P+ C C F + F H+
Sbjct: 65 PYECNICAKRFMWRDSFHRHV 85
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRF 223
HM H G RP+ C VC K+F K L H ++HTG +PY C+IC KRF
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRF 75
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTH 56
M +H G +PY C C F K +L HM+ HTG +P++C +C KRF + + + H
Sbjct: 29 MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 71 CDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
C +FT K + HM H G RPY C VC K+F K L H +I HT KPY C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI-----HTGIKPYECN 69
Query: 131 GCDAAF 136
C F
Sbjct: 70 ICAKRF 75
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 37/116 (31%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
+G++ Y C+ C K F+ KS + H +H+ +PY C C F K +L
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-----RPYGCGVCGKKFKMKHHL------ 53
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTH 204
+G HM+ HTG +P++C +C+KRF + S + H
Sbjct: 54 --------VG-----------------HMKIHTGIKPYECNICAKRFMWRDSFHRH 84
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
+G++ Y C C K F KS H H+G +P+GC C F K H++ H +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI- 63
Query: 269 ANHVCNVCGRSFV-RDSY 285
+ CN+C + F+ RDS+
Sbjct: 64 KPYECNICAKRFMWRDSF 81
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRH 289
GDK + C C +FT KSQ H+ H + + C VCG+ F +L+ H
Sbjct: 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGH 56
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 189 AVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
A C K +T+ S L H R HTGE+PY CD C +FA +T H H G +PF C
Sbjct: 11 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 70
Query: 247 CHLTFTSKSQFAVHLRTH 264
C F+ A+H++ H
Sbjct: 71 CDRAFSRSDHLALHMKRH 88
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 68 CD--ACDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTE 123
CD C T+T +L+ H+RTHTGE+PY C+ C +F++ L H R H +
Sbjct: 8 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---- 63
Query: 124 DKPYHCTGCDAAFSRKQYLEVN 145
+P+ C CD AFSR +L ++
Sbjct: 64 -RPFQCQKCDRAFSRSDHLALH 84
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 14 ACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDAC 71
C ++ + +L+ H+RTHTGE+P+ C C +F++ L H R H + + C C
Sbjct: 12 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 72 DATFTTKQNLEVHMRTH 88
D F+ +L +HM+ H
Sbjct: 72 DRAFSRSDHLALHMKRH 88
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKR 58
++ H+G KPYHC C F R L H R HTG RPFQC C + FS+ L H +
Sbjct: 27 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Query: 59 MHI 61
H
Sbjct: 87 RHF 89
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 174 QVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
+ H+RTHTGE+P+ C C +F + L H R HTG RP+ C CD+ F+ ++
Sbjct: 24 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 83
Query: 232 H 232
H
Sbjct: 84 H 84
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 43 CLKRFSQKSALNTHKRMHIPYIQYYCD--ACDATFTTKQNLEVHMRTHTGERPYQCEVCN 100
C K +++ S L H R H Y+CD C F L H R HTG RP+QC+ C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 101 KRFSQKSSLNTHKRIHI 117
+ FS+ L H + H
Sbjct: 73 RAFSRSDHLALHMKRHF 89
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 189 AVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
A C K +T+ S L H R HTGE+PY CD C +FA +T H H G +PF C
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 247 CHLTFTSKSQFAVHLRTH 264
C F+ A+H++ H
Sbjct: 72 CDRAFSRSDHLALHMKRH 89
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 9/82 (10%)
Query: 68 CD--ACDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTE 123
CD C T+T +L+ H+RTHTGE+PY C+ C +F++ L H R H +
Sbjct: 9 CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---- 64
Query: 124 DKPYHCTGCDAAFSRKQYLEVN 145
+P+ C CD AFSR +L ++
Sbjct: 65 -RPFQCQKCDRAFSRSDHLALH 85
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 14 ACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDAC 71
C ++ + +L+ H+RTHTGE+P+ C C +F++ L H R H + + C C
Sbjct: 13 GCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 72 DATFTTKQNLEVHMRTH 88
D F+ +L +HM+ H
Sbjct: 73 DRAFSRSDHLALHMKRH 89
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKR 58
++ H+G KPYHC C F R L H R HTG RPFQC C + FS+ L H +
Sbjct: 28 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Query: 59 MHI 61
H
Sbjct: 88 RHF 90
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 41 VVCLKRFSQKSALNTHKRMHIPYIQYYCD--ACDATFTTKQNLEVHMRTHTGERPYQCEV 98
C K +++ S L H R H Y+CD C F L H R HTG RP+QC+
Sbjct: 12 AGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK 71
Query: 99 CNKRFSQKSSLNTHKRIHI 117
C++ FS+ L H + H
Sbjct: 72 CDRAFSRSDHLALHMKRHF 90
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 174 QVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
+ H+RTHTGE+P+ C C +F + L H R HTG RP+ C CD+ F+ ++
Sbjct: 25 KAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL 84
Query: 232 H 232
H
Sbjct: 85 H 85
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHH-TV 267
+G AC+IC K F ++ H+ SH G+KP+ C C L F K + + H+R+H +V
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 268 GANHVCNVCGRSFVRDSYLIRH 289
G ++C CG+ F R +L H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGH 84
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVG-- 238
+G C +C K F LN HK H+GE+PY+C +C RF K ++ H SH G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
KP+ C SC F+ H++ H+
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
C+ C F +L H +H+GE+PY C VC RF +K ++ H R H + KPY
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV---GKPY 66
Query: 128 HCTGCDAAFSRKQYL 142
C C FSR +L
Sbjct: 67 ICQSCGKGFSRPDHL 81
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGE- 91
+G C +C K F LN HK H Y C C F K + H+R+H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 92 -RPYQCEVCNKRFSQKSSLNTH-KRIH 116
+PY C+ C K FS+ LN H K++H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 164 AKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGE--RPYACDICDK 221
K ++ H +H+GE+P+ C VC RF +K ++ H R H G +PY C C K
Sbjct: 14 GKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73
Query: 222 RFAVKSYVTSH 232
F+ ++ H
Sbjct: 74 GFSRPDHLNGH 84
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYI 64
SG+ C C F +L H +H+GE+P+ C VC RF +K ++ H R H +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 65 Q--YYCDACDATFTTKQNLEVHMR-THTG 90
Y C +C F+ +L H++ H+G
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGE--RPFQCVVCLKRFSQKSALNTH-KRMH 60
HSG KPY C C F RK + H+R+H G +P+ C C K FS+ LN H K++H
Sbjct: 30 HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 25 LEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYC--DACDATFTTKQN 80
L +HMR HTGE+P +C C K +S+ L TH R H Y C + C F+ +
Sbjct: 55 LVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD 114
Query: 81 LEVHM-RTHTGERPYQCEV--CNKRFSQKSSLNTH 112
H RTH+ E+PY C++ C KR++ SSL H
Sbjct: 115 RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 175 VHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYAC--DICDKRFAVKSYVT 230
VHMR HTGE+P +C C K +++ +L TH R HTGE+PY C + C K F+ S
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRA 116
Query: 231 SHR-WSHVGDKPFGCT--SCHLTFTSKSQFAVHLRTHH 265
H+ +H +KP+ C C +T S H++T H
Sbjct: 117 KHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 68/141 (48%), Gaps = 42/141 (29%)
Query: 75 FTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT-- 130
F + L VHMR HTGE+P++C E C K +S+ +L TH R H T +KPY C
Sbjct: 49 FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-----TGEKPYMCEHE 103
Query: 131 GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAV 190
GC AFS N + AK HQ RTH+ E+P+ C +
Sbjct: 104 GCSKAFS---------------------NASDRAK-------HQ--NRTHSNEKPYVCKL 133
Query: 191 --CSKRFTQKSSLNTH-KRVH 208
C+KR+T SSL H K VH
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVH 154
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 99 CNKRFSQKSSLNTHKRIHINYLHTEDKPY--HCTGCDAAFS--RKQYLEVNHTTVLAVMQ 154
C++ F + L H I+ ++H E K + H GC + QY+ V H +
Sbjct: 9 CSQEFDSQEQLVHH--INSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 155 PSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQC--AVCSKRFTQKSSLNTHK-RVHTGE 211
P K + L + + H+R+HTGE+P+ C CSK F+ S H+ R H+ E
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE 126
Query: 212 RPYACDI--CDKRFAVKSYVTSH 232
+PY C + C KR+ S + H
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKH 149
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 191 CSKRFTQKSSLNTH---KRVHTGERPYAC--DICDKR---FAVKSYVTSHRWSHVGDKPF 242
CS+ F + L H + +H + + C C + F + + H H G+KP
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 243 GCT--SCHLTFTSKSQFAVHLRTHHTVGANHVC--NVCGRSFVRDSYLIRHQNK 292
CT C +++ HLR+ HT ++C C ++F S +HQN+
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
KPY C C +F R L H R HTGE+P++C+ C K FSQ S L H+R+H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 35/61 (57%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
E+P+ C C K F++ S L H+RVHTGE+PY C C K F+ S + +H+ H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Query: 243 G 243
G
Sbjct: 72 G 72
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
Y C C F+ L H R HTGE+PY+C C K FSQ S L H+RIH
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 31/86 (36%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE 183
+KPY C C AFSR L +Q H R HTGE
Sbjct: 12 EKPYGCVECGKAFSRSSIL----------VQ---------------------HQRVHTGE 40
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHT 209
+P++C C K F+Q S L H+R+HT
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTV 149
E+PY C C K FS+ S L H+R+ HT +KPY C C AFS+ L +NH +
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRV-----HTGEKPYKCLECGKAFSQNSGL-INHQRI 64
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
E+PY C C K F+ S + H+ H G+KP+ C C F+ S H R H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
E+P+ CV C K FS+ S L H+R+H Y C C F+ L H R HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+KP+GC C F+ S H R H T + C CG++F ++S LI HQ
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVH-TGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHT 33
++H+G KPY C C +F + L H R HT
Sbjct: 35 RVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 61/143 (42%), Gaps = 38/143 (26%)
Query: 15 CDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYC--DA 70
C A++ + L+ H+ HTGE+PF C C K F+ L H H + C D
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 71 CDATFTTKQN--------------------------------LEVHMRTHTGERPYQC-- 96
CD FTTK N L+VH +HT + PY+C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 97 EVCNKRFSQKSSLNTHKRIHINY 119
E C+KRFS S L H+++H Y
Sbjct: 140 EGCDKRFSLPSRLKRHEKVHAGY 162
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 57 KRMHIPYIQYYCD--ACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTH 112
K + + Y +Y C C A + L+ H+ HTGE+P+ C E C K F+ L H
Sbjct: 4 KALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Query: 113 KRIHINYLHTEDKPYHC--TGCDAAFSRKQYLEVN----HTTVLAVMQPSLGNNTWSAKF 166
+ HT +K + C GCD F+ K ++ + H + V N + K
Sbjct: 64 -----SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK 118
Query: 167 LTSLFSHQVHMRTHTGERPFQCA--VCSKRFTQKSSLNTHKRVHTG 210
L +VH +HT + P++C C KRF+ S L H++VH G
Sbjct: 119 HNQL---KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 11/127 (8%)
Query: 174 QVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYV 229
Q H+ HTGE+PF C C K FT L H HTGE+ + CD CD RF K+ +
Sbjct: 31 QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 90
Query: 230 TSH--RWSHVGDKPFGC--TSCHLTFTSKSQFAVHLRTHHTVGANHVC--NVCGRSFVRD 283
H R+ ++ + C +C F +Q VH + HT + C C + F
Sbjct: 91 KKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLP 149
Query: 284 SYLIRHQ 290
S L RH+
Sbjct: 150 SRLKRHE 156
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 11 HCTACDASFCRKPYLEIHMRTHTGERPFQCV--VCLKRFSQKSALNTHKRMHIPYIQYYC 68
H C +F + L++H +HT + P++C C KRFS S L H+++H Y
Sbjct: 108 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 167
Query: 69 DAC 71
D+C
Sbjct: 168 DSC 170
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHR 233
+PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA HR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH--IPYIQ 65
KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H+ + +P ++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILE 61
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
+ + +N ++ GER
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLVGER 88
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
+ C C F+ +L H+RTHTGE+P+ C++C ++F++ H+ I EDK
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDK 63
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
+P+ C IC + F+ ++T+H +H G+KPF C C F + H H +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHIL 57
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 11/70 (15%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFS----RKQYLEVNHT 147
+P+QC +C + FS+ L TH R HT +KP+ C C F+ RK++ ++ H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-----HTGEKPFACDICGRKFARSDERKRHRDIQH- 55
Query: 148 TVLAVMQPSL 157
+L +++ +
Sbjct: 56 -ILPILEDKV 64
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 240 KPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQN 291
KPF C C F+ H+RTH T C++CGR F R RH++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH-TGEKPFACDICGRKFARSDERKRHRD 52
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRV 207
H+RTHTGE+PF C +C ++F + H+ +
Sbjct: 22 HIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
Y CD C A+F K NL H HTGE+PY+C +C +F++ ++L TH RIH
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
++P++C C F K +L +HK VHTGE+PY C+IC +F + + +H H G+KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+KPY C C ASF K L H HTGE+P++C +C +F++ + L TH R+H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 31/90 (34%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE 183
DKPY C C A+F ++ +L SH+ HTGE
Sbjct: 15 DKPYKCDRCQASF----------------------------RYKGNLASHKT---VHTGE 43
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+P++C +C +F + ++L TH R+H+GE+P
Sbjct: 44 KPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERP 93
++P++C C F K L +HK +H Y C+ C A F NL+ H R H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
++PY CD C F K + SH+ H G+KP+ C C F + H R H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 3 LHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
+H+G KPY C C A F R L+ H R H+GE+P
Sbjct: 39 VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRH 289
DKP+ C C +F K A H +T HT + CN+CG F R + L H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTH 64
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+Y CD C +F+ +L H RTHTGE+PY+C+ C K F Q+S L H R+H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
R ++C C K F+ S L+ H+R HTGE+PY CD C K F +S++ H H G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 29/51 (56%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
Y C C SF L H RTHTGE+P++C C K F Q+S L H R+H
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
H RTHTGE+P++C C K F Q+S L H RVHTG P
Sbjct: 37 HRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERP 93
R ++C C K FS S L+ H+R H Y CD C F + +L H R HTG P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGAN 270
R Y CD C K F+ S ++ HR +H G+KP+ C C F +S H R H G +
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLA 151
R Y+C+ C K FS S L+ H+R HT +KPY C C AF ++ +L + H V
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT-----HTGEKPYKCDECGKAFIQRSHL-IGHHRVHT 70
Query: 152 VMQPSLG 158
PS G
Sbjct: 71 GSGPSSG 77
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 234 WSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRH 289
W + + C C +F+ S + H RTH T + C+ CG++F++ S+LI H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTH-TGEKPYKCDECGKAFIQRSHLIGH 65
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
+ H+G KPY C C +F ++ +L H R HTG P
Sbjct: 39 RTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 8 KPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+PY C +CD F R L H+R HTG++PFQC +C++ FS+ L TH R H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 184 RPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSH 236
RP+ C V C +RF++ L H R+HTG++P+ C IC + F+ ++T+H +H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 61 IPYIQYYC---DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+P ++ Y ++CD F+ L H+R HTG++P+QC +C + FS+ L TH R H
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 212 RPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
RPYAC + CD+RF+ +T H H G KPF C C F+ H+RTH
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 33/95 (34%)
Query: 117 INYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQ 174
+NY+ + +PY C CD FSR L
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDEL-------------------------------T 38
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
H+R HTG++PFQC +C + F++ L TH R HT
Sbjct: 39 RHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 92 RPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
RPY C V C++RFS+ L H RIH T KP+ C C FSR +L
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFSRSDHL 65
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 36 RPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
RP+ C V C +RFS+ L H R+H + C C F+ +L H+RTHT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHT 33
+++H+G KP+ C C +F R +L H+RTHT
Sbjct: 41 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 182 GERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
G + C VC + + +SL H +H+ E+ Y C C+K F + Y T H H G++
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 242 FGCTSCHLTFTSKSQFAVHLRTHHT 266
+ C +C +F + + H+++ H+
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHS 103
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 34 GERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERP 93
G + C+VC + + ++L H +H +Y C C+ F + H HTGER
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTED 124
YQC C K F +++ HI +H++D
Sbjct: 79 YQCLACGKSFINYQFMSS----HIKSVHSQD 105
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 167 LTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVK 226
LTSL + H H+ E+ + C C K F H+ HTGER Y C C K F
Sbjct: 35 LTSL---RRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY 91
Query: 227 SYVTSHRWSHVGDKPFG 243
+++SH S P G
Sbjct: 92 QFMSSHIKSVHSQDPSG 108
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 64 IQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
+ Y C C ++ +L H H+ E+ Y C C K F H+ IH HT
Sbjct: 21 VYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHE-IH----HTG 75
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPS 156
++ Y C C +F Q++ +H + PS
Sbjct: 76 ERRYQCLACGKSFINYQFMS-SHIKSVHSQDPS 107
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 3 LHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTH 56
+HS K Y C C+ F Y H HTGER +QC+ C K F +++H
Sbjct: 44 IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH 97
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYI 64
G Y C C S+ L H H+ E+ + C C K F H+ H
Sbjct: 18 DGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGER 77
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERP 93
+Y C AC +F Q + H+++ + P
Sbjct: 78 RYQCLACGKSFINYQFMSSHIKSVHSQDP 106
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTED-KPYHCTGCDAAFSRKQYLEV 144
RTH+GE+PY+C +C+ RF+Q ++ ++HI HTE+ +HC CD +RK L V
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTM----KMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 145 NHTTVLAVMQPSLG 158
+ + PS G
Sbjct: 64 HLRKQHSYSGPSSG 77
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTH-KRMHIPYI-QYYCDACDATFTTKQNLEVHMR 86
RTH+GE+P++C +C RF+Q + H + H + +++C CD K +L VH+R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 199 SSLNTHKRVHTGERPYACDICDKRFA----VKSYVTSHRWSHVGDKPFGCTSCHLTFTSK 254
S + R H+GE+PY C IC RF +K ++ +V F C C K
Sbjct: 1 GSSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAK--FHCPHCDTVIARK 58
Query: 255 SQFAVHLRTHHT 266
S VHLR H+
Sbjct: 59 SDLGVHLRKQHS 70
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTH-KRVHTGE-RPYACDICDKRFAVKSYVTSH 232
RTH+GE+P++C +C RFTQ ++ H + HT + C CD A KS + H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIH-MRTHTGE-RPFQCVVCLKRFSQKSALNTHKR 58
+ HSG KPY C C A F + +++H ++ HT F C C ++KS L H R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG-ANHVCNVCGRSFVRDSYLIRHQNK 292
+H G+KP+ C CH FT +H+ HT A C C R S L H K
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 189 AVCSKRFTQKSSLNTHKRVHTGERPYAC--DICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
A C + + L H HTGE+P+ C + C+K F ++T H +H G+K F C S
Sbjct: 9 ADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 68
Query: 247 --CHLTFTSKSQFAVHLRTHHTV 267
C L FT+K+ H H +
Sbjct: 69 DGCDLRFTTKANMKKHFNRFHNI 91
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 174 QVHMRTHTGERPFQC--AVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYV 229
Q H+ HTGE+PF C C K FT L H HTGE+ + CD CD RF K+ +
Sbjct: 22 QAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 81
Query: 230 TSH 232
H
Sbjct: 82 KKH 84
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 15 CDASFCRKPYLEIHMRTHTGERPFQC--VVCLKRFSQKSALNTHKRMHIPYIQYYC--DA 70
C A++ + L+ H+ HTGE+PF C C K F+ L H H + C D
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 71 CDATFTTKQNLEVHM 85
CD FTTK N++ H
Sbjct: 71 CDLRFTTKANMKKHF 85
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 63 YIQYYCDACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYL 120
YI + D C A + L+ H+ HTGE+P+ C E C K F+ L H +
Sbjct: 4 YICSFAD-CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH-----SLT 57
Query: 121 HTEDKPYHC--TGCDAAFSRKQYLE 143
HT +K + C GCD F+ K ++
Sbjct: 58 HTGEKNFTCDSDGCDLRFTTKANMK 82
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 132 CDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAV- 190
C AA+++ L+ H + +P K TSL H THTGE+ F C
Sbjct: 11 CGAAYNKNWKLQA-HLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 69
Query: 191 -CSKRFTQKSSLNTH 204
C RFT K+++ H
Sbjct: 70 GCDLRFTTKANMKKH 84
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 26/33 (78%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+PFQC C KRFTQ S L++H+RVHTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+P+QCE C KRF+Q S L++H+R+H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTG 37
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C+ C KRF S++ SH+ H G+KP G +S
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PFQC C KRF+Q S L++H+R+H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C F + +L H R HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C+ C FT +L H R HTGE+P
Sbjct: 13 FQCEECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
C C F + L +H+RTHTGE+PY+CE C +QK+SL H H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 6 GNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
G+ C+ C F YL IH+RTHTGE+P++C C +QK++L H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 161 TWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
++ KF S + +H+RTHTGE+P++C C QK+SL H H
Sbjct: 8 SYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 182 GERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSH 236
G +C+ C K F LN H R HTGE+PY C+ C+ A K+ + H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 23/56 (41%)
Query: 210 GERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHH 265
G C C K F Y+ H +H G+KP+ C C K+ HL HH
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 90 GERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
G +C C K F LN H R H T +KPY C C+ A ++K L
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTH-----TGEKPYKCEFCEYAAAQKTSL 48
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 22/55 (40%)
Query: 34 GERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTH 88
G +C C K F LN H R H Y C+ C+ K +L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTH 32
++ H+G KPY C C+ + +K L H+ H
Sbjct: 24 LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+PF+C C KRFTQ S L++H+RVHTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+P++CE C KRF+Q S L++H+R+H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTG 37
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C+ C KRF S + SH+ H G+KP G +S
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF+C C KRF+Q S L++H+R+H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C F + L H R HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C+ C FT L H R HTGE+P
Sbjct: 13 FKCEECGKRFTQNSQLHSHQRVHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 179 THTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+ T E+PF+C C K F Q+S+LN+H+ +HTGE+P
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
T E+P+ CD CDK F +S + SHR H G+KP G +S
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSS 45
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 5/40 (12%)
Query: 87 THTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+ T E+P++C+ C+K F Q+S+LN+H+ I HT +KP
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMI-----HTGEKP 40
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 31 THTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ T E+PF+C C K F Q+SALN+H+ +H
Sbjct: 6 SGTAEKPFRCDTCDKSFRQRSALNSHRMIH 35
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C CD SF ++ L H HTGE+P
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ CD CD +F + L H HTGE+P
Sbjct: 13 FRCDTCDKSFRQRSALNSHRMIHTGEKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C++C K FT+KS L+ H+++HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C SF +K L +H + HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C IC K F KS + H+ H G+KP G +S
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C +C K F++KS L+ H++I HT +KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQI-----HTGEKP 40
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C +FT K L VH + HTGE+P
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C +C K F++KS L+ H+++H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+ C+ C +FT KSQ VH + H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG KPY C+ C +F K YL IHMRTHTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+G +PY C C K F KSY+ H +H G+KP G +S
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+G +P+ C+ C K F KS L H R HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.2 bits (82), Expect = 0.025, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F +K L +HMRTHTGE+P
Sbjct: 11 YGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 35.0 bits (79), Expect = 0.055, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G KP+GC+ C F SKS +H+RTH
Sbjct: 7 GVKPYGCSECGKAFRSKSYLIIHMRTH 33
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+G +PY C C K F KS L H R H
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTH 33
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C VCSK FTQK+ L H++ HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C +C K F K+++ H+ +H G+KP G +S
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F +K +L H +THTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C+VC+K F+QK+ L H++ H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTG 37
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C FT K +L H +THTGE+P
Sbjct: 13 YECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C VC K F+QK+ L H++ H
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTH-KRMHIPYI---QYYCDACDATFTTKQNLEVHM 85
RTHTGE+P+ C C K F QK L+ H KR H P + C C TFT + + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 86 RTHTGERPYQCE 97
G + E
Sbjct: 68 DNCAGPDGVEGE 79
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT---VGANHVCNVCGRSFVRDSYLIRHQN 291
+H G+KP+ C+ C TF K +H + +H V A VC+ CG++F R + + RH +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTH-KRIH-INYLHTEDKPYHCTGCDAAFSRKQYL 142
RTHTGE+PY C C+K F QK L+ H KR H N++ + C+ C F+R+ +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAA---FVCSKCGKTFTRRNTM 63
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTH-KRVHTGE---RPYACDICDKRFAVKSYVTSH 232
RTHTGE+P+ C+ C K F QK L+ H KR H + C C K F ++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGER----PFQCVVCLKRFSQKSALNTH 56
+ H+G KPY C+ CD +F +K L++H + + F C C K F++++ + H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 58 RMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER----PYQCEVCNKRFSQKSSLNTH 112
R H Y C CD TF KQ L++H + + + C C K F++++++ H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEV 144
HT +KPY C+ CD F +KQ L++
Sbjct: 10 HTGEKPYACSHCDKTFRQKQLLDM 33
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH-KRIHINYL 120
+ C+ C F +++L+ H R+HT E+PY C +CN+ F+++ L H ++IH L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSH 232
F C VC++ F ++ L H R HT E+PY C +C++ F + + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTH 56
C C +F R+ +L+ H R+HT E+P+ C +C + F+++ L H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
+ CEVC + F+++ L H R H N +KPY C C+ AF+R+ L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTN-----EKPYPCGLCNRAFTRRDLL 46
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 214 YACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
+ C++C + FA + ++ H SH +KP+ C C+ FT + H + H+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 168 TSLFSHQVHM----RTHTGERPFQCAVCSKRFTQKSSLNTH-KRVHTG 210
T F+ Q H+ R+HT E+P+ C +C++ FT++ L H +++H+G
Sbjct: 9 TRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVH-MRTHTG 90
F C VC + F+++ L H R H Y C C+ FT + L H + H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+GE+P+QC C K F+Q+ SL H+R+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+GE+PYQC+ C K FSQ+ SL H+R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTG 35
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG KPY C C SF ++ L +H R HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+QC C K FSQ+ +L H+R+H
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLH 33
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C +F+ + +L VH R HTG P
Sbjct: 11 YQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
+GE+PY C C K F+ + + H H G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
G+KP+ C C +F+ + AVH R H G
Sbjct: 7 GEKPYQCKECGKSFSQRGSLAVHERLHTGSG 37
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++CA C K FT +S+L TH+++HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C C K F+ +S+L TH++IH
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTG 37
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F +S + +H+ H G+KP G +S
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C FT + NL H + HTGE+P
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F + L H + HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+ +S L TH+++H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F QK++L H+R+HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K FA K+ +T H+ H G+KP G +S
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F+QK++L H+RI HT +KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRI-----HTGEKP 40
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F +K L H R HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F K NL H R HTGE+P
Sbjct: 13 YRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+QK+ L H+R+H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSH 232
ERPF C C K + S L+ H+R H G RP +C C K F +S V H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGA 269
ERP+ C+ C K + S ++ HR +H+G +P C C F +S+ HL+ H A
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
++C+ C T+ L H R H G RP C C K F +S +N H ++H N
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN 57
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTH 88
ERPF C C K + S L+ H+R H+ Y C C F + + H++ H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+P+ C C ++ L H R H G RP C C K F +S +N H ++H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVL 150
ERP+ C C K + S L+ H+R H+ Y +P C C F + EVN +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGY-----RPRSCPECGKCF--RDQSEVNRHLKV 54
Query: 151 AVMQPS 156
+P+
Sbjct: 55 HQNKPA 60
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H R H G RP C C K F +S +N H +VH
Sbjct: 23 HRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 70 ACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIH 116
C T+ +L+ H RTHTGE+P+ C + C +RF++ L+ H+R H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 14 ACDASFCRKPYLEIHMRTHTGERPFQCV--VCLKRFSQKSALNTHKRMH 60
C ++ + +L+ H RTHTGE+PF C C +RF++ L+ H+R H
Sbjct: 24 GCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 191 CSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSH 236
C K + + S L H R HTGE+P++C C++RFA ++ HR +H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 174 QVHMRTHTGERPFQCA--VCSKRFTQKSSLNTHKRVH 208
+ H RTHTGE+PF C+ C +RF + L+ H+R H
Sbjct: 36 KAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 219 CDKRFAVKSYVTSHRWSHVGDKPFGCT--SCHLTFTSKSQFAVHLRTH 264
C K + S++ +H +H G+KPF C+ C F + + H RTH
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 2 KLHSGNKPYHCT--ACDASFCRKPYLEIHMRTH 32
+ H+G KP+ C+ C+ F R L H RTH
Sbjct: 40 RTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+P+ C C K F QKS LN H+R+HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F KS++ HR H G+KP G +S
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C SF +K +L H R HTGE+P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY C C K F QKS LN H+RI HT +KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRI-----HTGEKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C +F K +L H R HTGE+P
Sbjct: 13 YICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P+ C C K F QKS LN H+R+H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
++CN CG+SF++ S+L RH+
Sbjct: 13 YICNECGKSFIQKSHLNRHR 32
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
ERP+ C VC K FT +S+L H+++HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
ERPY C +C K F +S + H+ H G+KP G +S
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
ERPY C VC K F+ +S+L H++I HT +KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKI-----HTGEKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C FT + NL H + HTGE+P
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
+PY CT C +F + L H + HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
ERP+ C VC K F+ +S L H+++H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
++C VCG++F S LI+HQ
Sbjct: 13 YICTVCGKAFTDRSNLIKHQ 32
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+PF+C C K F+++S+LN H ++HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF+CV C K FS++SALN H ++H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C F R+ L +H + HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+P++C C K FS++S+LN H + LHT +KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHK-----LHTGEKP 40
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K F+ +S + H H G+KP G +S
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 69 DACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINY 119
+ C F L+VH +HT + PY+C E C+KRFS S L H+++H Y
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 191 CSKRFTQKSSLNTHKRVHTGERPYAC--DICDKRFAVKSYVTSHRWSHVG 238
C K F + + L H+ HT + PY C + CDKRF++ S + H H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 11 HCTACDASFCRKPYLEIHMRTHTGERPFQCV--VCLKRFSQKSALNTHKRMHIPYIQYYC 68
H C +F + L++H +HT + P++C C KRFS S L H+++H Y
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 69 DAC 71
D+C
Sbjct: 65 DSC 67
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 174 QVHMRTHTGERPFQCA--VCSKRFTQKSSLNTHKRVHTG 210
+VH +HT + P++C C KRF+ S L H++VH G
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 69 DACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINY 119
+ C F L+VH +HT + PY+C E C+KRFS S L H+++H Y
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGY 59
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 191 CSKRFTQKSSLNTHKRVHTGERPYAC--DICDKRFAVKSYVTSHRWSHVG 238
C K F + + L H+ HT + PY C + CDKRF++ S + H H G
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 11 HCTACDASFCRKPYLEIHMRTHTGERPFQCV--VCLKRFSQKSALNTHKRMHIPYIQYYC 68
H C +F + L++H +HT + P++C C KRFS S L H+++H Y
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 69 DAC 71
D+C
Sbjct: 65 DSC 67
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 174 QVHMRTHTGERPFQCA--VCSKRFTQKSSLNTHKRVHTG 210
+VH +HT + P++C C KRF+ S L H++VH G
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 58
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.5 bits (101), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+PF+CA C K F+ S L TH+R+HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K F++ S + +H+ H G+KP G +S
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+P++C C K FS S L TH+RIH
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
Score = 33.1 bits (74), Expect = 0.21, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C SF L H R HTGE+P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF+C C K FS S L TH+R+H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C +F+ L H R HTGE+P
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KPF C C +F+ SQ A H R H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C+ C K F +KS L+ H+R+HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C SF +K L +H R HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C C K F +KS L+ H+RIH
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C +F K L VH R HTGE P
Sbjct: 13 YECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F KS + H+ H G+ P G +S
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F +KS L+ H+R+H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+ C+ C +F KSQ VH R H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+ ++C VC K F+Q S L TH+RVHTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+ Y CD+C K F+ S++ +H+ H G+KP G +S
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+ Y+C+VC K FSQ S L TH+R+H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTG 37
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y CD C F+ +L+ H R HTGE+P
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
K Y C C F + +L+ H R HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+ ++C VC K FSQ S L TH+R+H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVH 35
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C+VC K F+ + SL+ H+R+H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C VC K FS + SL+ H+RIH
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C +F + L +H R H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F+ +Q+L VH R H+G++P
Sbjct: 13 YECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C +C K F+ + ++ H+ H G KP G +S
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C VC K FS + +L+ H+R+H
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPS 156
+KPY C+ C AFS +Q L V H + + +PS
Sbjct: 10 EKPYECSVCGKAFSHRQSLSV-HQRIHSGKKPS 41
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ C C K F+QKS L+ H+R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F+ KS +++H+ +H G+KP G +S
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F +K L H RTHTGE+P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C TF+ K L H RTHTGE+P
Sbjct: 13 YGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY C C K FSQKS L+ H+R HT +KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRT-----HTGEKP 40
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P+ C C K FSQKS L+ H+R H
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+GC C TF+ KS + H RTH
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+GE+P+ C C K FTQ S L+ H+RVHTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+GE+PY C+ C K F+Q S L+ H+R+H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
SG KPY C C +F + L IH R HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C K F+Q S L+ H+R+H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVH 33
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGD 239
+GE+PY C C K F S ++ HR H G+
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C C FT L +H R HTGE
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C VC K F SSL H+R+HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY CD+C K F S +T H+ H G+KP G +S
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C+VC+K F SSL H+RI HT +KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRI-----HTGEKP 40
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y CD C +F +L VH R HTGE+P
Sbjct: 13 YKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C SF L +H R HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C VC K F S+L H+R+H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+PF+C+ C K F KS+L H+R HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C F TK NL VH RTHTGE+P
Sbjct: 13 FECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C+ C +F K L +H RTHTGE+P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K F KS + H+ +H G+KP G +S
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KPF C+ C F +KS VH RTH
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+P++C C K F+ KS+L H+R HT +KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRT-----HTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C +F K YL IHMRTH+GE+P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F+ KSY+ H +H G+KP G +S
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 36.6 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ C+ C K F+ KS L H R H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 35.0 bits (79), Expect = 0.050, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F++K L +HMRTH+GE+P
Sbjct: 13 YGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 34.7 bits (78), Expect = 0.063, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+GC+ C F+SKS +H+RTH
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY C C K FS KS L H R H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 31/62 (50%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE 183
+KPY C+ C AFS K YL +HMRTH+GE
Sbjct: 10 EKPYGCSECGKAFSSKSYL-------------------------------IIHMRTHSGE 38
Query: 184 RP 185
+P
Sbjct: 39 KP 40
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P+ C C K FS KS L H R H
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTH 35
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E PF C+ C K FT K++L H+++HTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C FT K NL +H + HTGERP
Sbjct: 13 FICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 9 PYHCTACDASFCRKPYLEIHMRTHTGERP 37
P+ C+ C F K L IH + HTGERP
Sbjct: 12 PFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E P+ C C K F K+ + H+ H G++P G +S
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E P+ C C K F+ K++L H++IH
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K FTQ S L H R+HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S++T+H H G+KP G +S
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + +L H R HTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F+Q S L H RI HT +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRI-----HTGEKP 40
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT +L H R HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+Q S L H R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C VC K F+ +SL H+RVH+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY CD+C K F+ + +T H+ H G+KP G +S
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C+VC K FS +SL H+R+H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C VC K FS ++L H+R+H
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F L H R H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y CD C F+ +L H R H+GE+P
Sbjct: 13 YECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+P+QC C K F+Q S L H+RVHTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+PYQC C K FSQ S L H+R+ HT +KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRV-----HTGEKP 40
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F + L H R HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+PY C+ C K F+ S + H+ H G+KP G +S
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F+ L H R HTGE+P
Sbjct: 13 YQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
+P+QC C K FSQ S L H+R+H
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVH 35
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F+Q S L H+R+HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C C K FSQ S L H+RIH
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTG 37
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F+ S + H+ H G+KP G +S
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F + L H R HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K FSQ S L H+R+H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F+ L H R HTGE+P
Sbjct: 13 YKCNECGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+PF+C C K + Q+ L H+RVHTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K + + ++T H+ H G+KP G +S
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C S+ ++ +L H R HTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+P++C C K ++Q+ L H+R+ HT +KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRV-----HTGEKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF+C C K ++Q+ L H+R+H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C ++ + +L H R HTGE+P
Sbjct: 13 FKCGECGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
F+C C K FTQ SSL H+R+HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C+ C TFT +L VH R HTGE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
K + C C +F + L +H R HTGE+P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
++C C K F+Q SSL H+RI HT +KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRI-----HTGEKP 40
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 214 YACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ C+ C K F S +T H+ H G+KP G +S
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMH 60
F+C C K F+Q S+L H+R+H
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIH 35
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
ER ++C+ C K F QKS+L+ H+R+H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
ER Y+C C K F QKS+L+ H+RIH
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERP 37
Y C+ C +F +K L +H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
ER Y C C K F KS ++ H+ H G+KP G +S
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F K L +H R H GE+P
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
ER ++C C K F QKS L+ H+R+H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GE+P+ C C+K F+ KSY+ H+ +H +KP G +S
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG KP+ C+ C+ +F K YL +H +TH E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+GE+PF C+ C K F+ KS L H++ H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KPFGC+ C F+SKS VH +TH
Sbjct: 7 GEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+GE+P+ C C K FS KS L H++ H E+KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQT-----HAEEKP 38
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+PF C C K FS KS L H++ H
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C+ F++K L VH +TH E+P
Sbjct: 11 FGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTT 148
+KP+ C+ C+ AFS K YL V+ T
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQT 32
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F+V+S +T+H+ H G KP G +S
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F+ +SSL TH+ +HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C C K FS +SSL TH+ IH
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTG 37
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K FS +S+L TH+ +H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F + L H HTG++P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F+ + +L H HTG++P
Sbjct: 13 YECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH 112
+Y C+ C L+ H+RTHT RPY C CN F K +L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
+ C C R + S L H R HT RPY C C+ F K +T H S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ C C R + S L H R H Y+C C+ +F TK NL HM++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
Y CE C R + S L H R H T+ +PYHCT C+ +F K L
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH-----TDVRPYHCTYCNFSFKTKGNL 45
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 214 YACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRT 263
Y C+ C R S + H +H +P+ CT C+ +F +K H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTH 56
Y C C + L+ H+RTHT RP+ C C F K L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTH 204
H+RTHT RP+ C C+ F K +L H
Sbjct: 20 HIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRT 31
++ H+ +PYHCT C+ SF K L HM++
Sbjct: 21 IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+GE+P+ C C K FT KS L HK VHTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GE+PY+C+ C K F KS + H+ H G KP G +S
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGPSS 43
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+GE+PY C C K F+ KS L HK +H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTG 35
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG KPY C C +F K L +H HTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT K L VH HTG +P
Sbjct: 11 YSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
G+KP+ C C FT KSQ VH H V
Sbjct: 7 GEKPYSCNECGKAFTFKSQLIVHKGVHTGV 36
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C K F+ KS L HK +H
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVH 33
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F+Q + L H+RVHTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F+ +++ H+ H G+KP G +S
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F + +L H R HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C+ C K FSQ + L H+R+H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTG 37
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K FSQ + L H+R+H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F+ +L H R HTGE+P
Sbjct: 13 YECKECGKAFSQTTHLIQHQRVHTGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.8 bits (94), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+PF C C K F+ LN H+R+HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF C+ C K FS LN H+R+H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 31.2 bits (69), Expect = 0.62, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+P+ C C K FS LN H+RIH
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C +F L H R HTGE+P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K F+ + HR H G+KP G +S
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F+QK SL H RVHTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C+ C K FSQK SL H R+H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTG 36
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F +K L +H+R HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y CD C F+ K +L VH+R HTG P
Sbjct: 12 YRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K FSQK +L H R+H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
E+PY CD C K F+ K + H H G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTHHTVGAN 270
+KP+ C C F+ K VH+R H G +
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K + K +L+ H++VHTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C + +K NL++H + HTGERP
Sbjct: 13 YKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C + K L++H + HTGERP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+CE C K ++ K +L+ H+++H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTG 37
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K + K + H+ H G++P G +S
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
F+C C K FT+KS+L+ H+++HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERP 37
+ CT C +F RK L +H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C FT K L +H + HTGE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 214 YACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ C C K F KS ++ H+ H G+KP G +S
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
++C C K F++KS+L+ H++I HT +KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKI-----HTGEKP 40
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMH 60
F+C C K F++KS L+ H+++H
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIH 35
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
ER ++C+ C K F +KS+L H+R+HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERP 37
Y C+ C +F RK L +H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
ER Y C C K FA KS + H+ H G+KP G +S
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
ER Y+C C K F++KS+L H+RI HT +KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRI-----HTGEKP 40
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F K L +H R HTGE+P
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
ER ++C C K F++KS L H+R+H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 24/30 (80%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+P++C+ C K FT+KS L+ H++ HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C+ C +F RK L IH ++HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHT 122
E+PY+C C K F++KS L+ H++ H H+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHS 41
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C FT K L +H ++HTGER
Sbjct: 13 YKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F KS + H+ SH G++ G +S
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F++KS L+ H++ H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+G+R ++C C K F QK SL H+R+HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+G+R Y+C+ C K F QK SL H+RIH
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTG 35
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG + Y C C SF +K L +H R HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+G+R ++C C K F QK +L H+R+H
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C +F K +L +H R HTG P
Sbjct: 11 YECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
+G+R Y C C K F K +T H H G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ C C K F S L H+R+HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY+C C +F L+ H R HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S + H+ H G+KP G +S
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY CE C K F S L H+RIH
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F L+ H R HTGE+P
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P+ C C K F S L H+R+H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+PF+C +C K F +S LN H VHT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ CDIC K F +S + H H +KP G +S
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+P++C++C K F +S LN H + +HT +KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRH-----SMVHTAEKP 40
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C SFC + L H HT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF+C +C K F +S LN H +H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+GE+P+ C C K F+ KS L H+R+HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 19/32 (59%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
SG KPY C C F K YL +H R HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 38.5 bits (88), Expect = 0.005, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GE+PY C+ C K F+ KSY+ H+ H G+K G +S
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSS 43
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+PY C C K FS KS L H+RIH
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 33.9 bits (76), Expect = 0.096, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KP+GC C F+SKS VH R H
Sbjct: 7 GEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C K FS KS L H+R+H
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIH 33
Score = 31.2 bits (69), Expect = 0.71, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C+ C F++K L VH R HTGE+
Sbjct: 11 YGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K FTQ S L H+RVHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S++ HR H G KP G +S
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C C K F+Q S L H+R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTG 37
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + +L H R HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT +L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+Q S L H+R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/31 (61%), Positives = 20/31 (64%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
SG KPY CT C +F K L IH RTHTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+GE+P++C C K F KS L H+R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 34.3 bits (77), Expect = 0.085, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+PY+C C K F KS L H+R H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 33.5 bits (75), Expect = 0.13, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KP+ CT C F KSQ +H RTH
Sbjct: 7 GEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 33.1 bits (74), Expect = 0.20, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGD 239
+GE+PY C C K F +KS + H+ +H G+
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 31.6 bits (70), Expect = 0.50, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P++C C K F KS L H+R H
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTH 33
Score = 30.0 bits (66), Expect = 1.5, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C C F K L +H RTHTGE
Sbjct: 11 YECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 27.7 bits (60), Expect = 8.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLG 158
+KPY CT C AF K L ++ T PS G
Sbjct: 8 EKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+RP++C C K F KSSL H+R HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+RPY C C K F KS + HR SH G+KP G +S
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F TK +L H R+HTGE+P
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
+PY C C +F K L H R+HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+RPY+C C K F KSSL H+R HT +KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRR-----SHTGEKP 40
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
+RP++C+ C K F KS+L H+R H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH 35
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K FTQ S L H+R+HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S++ +H+ H G KP G +S
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C C K F+Q S L H+RIH
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + +L H R HTG +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+Q S L H+R+H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT +L H R HTG +P
Sbjct: 13 YKCNECGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K FTQ S L H+ +HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S++ HR H G+KP G +S
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F+Q S L H+ I HT +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGI-----HTGEKP 40
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + +L H HTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT +L H HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
++P++C C K F Q LN HKRVHTGER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C C +F + +L H R HTGER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
++PY+C+ C K F Q LN HKR+H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
++P++C C K F Q LN HKR+H
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C TF +L H R HTGER
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGER 39
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTG 210
RP+ C+VC KRF+ K + TH RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHIN 118
RPY C VC KRFS K + TH R+H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
RP+ C VC KRFS K + TH R+H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVG 238
RPY+C +C KRF++K + +H H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTG 34
+PY C+ C F K +E H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTG 90
Y C C F+ K +E H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+PF+C C K F Q L +H R+HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C +F + +L H+R HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K F ++ SH H G+KP G +S
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+P++C+ C K F Q L +H RI HT +KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRI-----HTGEKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C F +L H+R HTGE+P
Sbjct: 13 FKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+PF+C C K F Q L +H R+H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+P++C C K FTQ S L H+ +HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSG 42
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S++ HR H G+KP G +S
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F+Q S L H+ I HT +KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGI-----HTGEKP 40
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + +L H HTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT +L H HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 273 CNVCGRSFVRDSYLIRHQN 291
CN CG+ F ++S+L+RH+
Sbjct: 15 CNECGKVFTQNSHLVRHRG 33
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+GE+P+ C C K F +KS TH+R+HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
SG KPY CT C +F RK + H R HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+GE+PY C C K F +KS TH+RIH
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C K F +KS TH+R+H
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGD 239
+GE+PY C C K F KS+ +H H G+
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KP+ CT C F KS F H R H
Sbjct: 7 GEKPYVCTECGKAFIRKSHFITHERIH 33
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
+VC CG++F+R S+ I H+
Sbjct: 11 YVCTECGKAFIRKSHFITHE 30
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C+ C K F + + LN H+R+HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINY 119
E+PY+C C K F + + LN H+RIH Y
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGY 38
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C +F R +L H R HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F +++ HR H G +P G +S
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHIPY 63
E+P++C C K F + + LN H+R+H Y
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGY 38
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+G++P C C K F Q S L+ H+R+H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSG 40
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+G++P C+ C K F S ++ H+ H G+KP G +S
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGPSS 43
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG KP C C +F + L H R H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+G++P C C K F Q S L+ H+RIH
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIH 33
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
C+ C TF L H R H+GE+P
Sbjct: 11 LVCNECGKTFRQSSCLSKHQRIHSGEKP 38
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+P++C+ C K FT KS L H++ HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C+ C SF K L IH + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHT 122
E+PY+C C K F+ KS L H++ H H+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHS 41
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C +FT K L +H + HTGER
Sbjct: 13 YKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F KS + H+ H G++ G +S
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+ KS L H++ H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+ C+ C +FT KS+ +H + H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
ERP +C C K F Q + L H+R+HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSG 42
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
ERP+ C+ C K F +++ H+ H G+KP G +S
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
+P+ C C SF + +L H R HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
H CN CG+SF++ ++LI+HQ
Sbjct: 13 HKCNECGKSFIQSAHLIQHQ 32
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
ERP++C C K F Q + L H+RI HT +KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRI-----HTGEKP 40
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C+ C +F +L H R HTGE+P
Sbjct: 13 HKCNECGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+P++C C K F SS H+R+HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F S T H+ H G +P G +S
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C C K F SS H+R+H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTG 37
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F H R HTG+RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C+ C K F S+ H+R+H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLH 35
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+P QC +C K FTQ SSL H R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
+P QCV+C K F+Q S+L H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+P QC +C K F+Q SSL H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KP C C +F + L H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
++PF+C C K F K +L TH+R+HTGE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KP+ CT C SF K L H R HTGE+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
++P++C C K F K +L TH+RIH
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTG 37
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
++PF+C C K F K L TH+R+H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
+ C C +F K NL H R HTGE+
Sbjct: 13 FECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
++P+ C C K F K + +H+ H G+K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+P+ C C K F+ SSL TH+ +HTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+PY C+ C K F+V S +T+H+ H G+KP G +S
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+PY C C K FS SSL TH+ I HT +KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVI-----HTGEKP 40
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F L H HTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F+ +L H HTGE+P
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F S+L TH+ +HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F S +T+H+ H G+KP G +S
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F S+L TH+ I HT +KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVI-----HTGEKP 40
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F NL H HTGE+P
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F L H HTGE+P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 187 QCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
QC C + FT KS LN H+R+HTGE+P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKPSG 42
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C FT K +L H R HTGE+P
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ + C C + F +KS++ H+ H G+KP G +S
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
K + C C F K +L H R HTGE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+ +QC C + F+ KS LN H+RI HT +KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRI-----HTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F S L+ H+R+HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F SY++ H+ H G+KP G +S
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F YL H R HTGE+P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F S L+ H+RI HT +KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRI-----HTGEKP 40
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F L H R HTGE+P
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F +SYL RHQ
Sbjct: 15 CNECGKVFRHNSYLSRHQ 32
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY CD C K F + + + H+ H G+KP G +S
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ C C K F + L H+R+HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y CD C F L H R HTGE+P
Sbjct: 13 YVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY C+ C K F + L H+RI HT +KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRI-----HTGEKP 40
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F L H R HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
++P++C C K FTQ S L H+ +HTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
++PY C+ C K F S++ HR H G+KP G +S
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + +L H HTGE+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
++PY+C C K F+Q S L H+ I HT +KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGI-----HTGEKP 40
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C FT +L H HTGE+P
Sbjct: 13 YKCNECGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHT---GERPYACDICDKRFAVKSYVTSHR 233
+G QC +C QK+SLN H+R H + C+ C KRF V +HR
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEV---- 144
+G QCE+C QK+SLN H+R H + P C C F + +
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFP--CEFCGKRFEKPDSVAAHRSK 60
Query: 145 NHTTVLAVMQPSLGNNT 161
+H +L Q S G ++
Sbjct: 61 SHPALLLAPQESSGPSS 77
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH---IPYIQYYCDACDATFTTKQNLEVH 84
+G QC +C QK++LN H+R H + +++ C+ C F ++ H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAH 57
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C +C K F V S++ H H G++P G +S
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C VC K F S L H VH+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F +L H H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C+VC K F S L H +H
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F +L H H+GERP
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERP 40
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C+ C F TK NL VH RTHTGE
Sbjct: 13 YECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
E+P++C C K F KS+L H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGE 35
KPY C C +F K L +H RTHTGE
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C C K F+ KS+L H+R H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGD 239
E+PY C+ C K F KS + H+ +H G+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+ C C F +KS VH RTH
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F+ KS L H+R H
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLG 158
+KPY C C AF+ K L V+ T PS G
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+PFQC C ++F++ L TH R HTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KP+ C C F R +L+ H RTHTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+P+QC+ C ++FS+ L TH R H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTG 27
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
+PFQC C ++FS+ L TH R H
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTH 25
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
+ C C F+ +L+ H RTHTGE+
Sbjct: 3 FQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDK 240
+P+ C C ++F+ ++ +H +H G+K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+G++P+ C C K F KS L H+R+HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 36.2 bits (82), Expect = 0.024, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 18/31 (58%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
SG KPY C C +F K L IH R HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 34.3 bits (77), Expect = 0.078, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+G++PY C C K F KS L H+RIH
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGD 239
+G++PY C+ C K F +KS + H H G+
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.6 bits (65), Expect = 2.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C+ C F K L +H R HTGE
Sbjct: 11 YVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 29.3 bits (64), Expect = 2.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+G++P+ C C K F KS L H+R+H
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIH 33
Score = 29.3 bits (64), Expect = 2.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G KP+ C C F KSQ +H R H
Sbjct: 7 GQKPYVCNECGKAFGLKSQLIIHERIH 33
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGE 35
KPY C C +F K YL IH RTHTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C+ C F +K L +H RTHTGE
Sbjct: 13 YVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+P+ C C K F KS L H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGD 239
+PY C+ C K F KSY+ H +H G+
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 240 KPFGCTSCHLTFTSKSQFAVHLRTH 264
KP+ C C F SKS +H RTH
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 271 HVCNVCGRSFVRDSYLIRH 289
+VCN CG++F SYLI H
Sbjct: 13 YVCNECGKAFRSKSYLIIH 31
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+PY C C K F KS L H R H
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTH 35
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F +S + H+ +H G+KP G +S
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F +SSL H+ H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C +F + L IH TH+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F + +L +H TH+GE+P
Sbjct: 13 YKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C C K F +SSL H+ H
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+ C C F ++S A+H TH
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGE 35
KPY C+ C +F R L +H RTH+GE
Sbjct: 11 KPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
E+P++C+ C K F + S L H+R H+GE
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C C K F + S L H+R H
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP+ C+ C F SQ VH RTH
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C C F L VH RTH+GE
Sbjct: 13 YECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 122 TEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLG 158
T +KPY C+ C AF R L V+ T PS G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ CG++F+R+S LI HQ
Sbjct: 15 CSECGKAFIRNSQLIVHQ 32
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F + S L H+R H
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTH 35
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGD 239
E+PY C C K F S + H+ +H G+
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSGE 38
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.014, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+GE P++C+ C K F +K L +H+R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 35.4 bits (80), Expect = 0.038, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
SG PY C+ C +F RK L H RTH GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 33.9 bits (76), Expect = 0.11, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE PY+C C K F++K L +H+R H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGD 239
+GE PY C C K F K + SH+ +H G+
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE P++C C K F++K L +H+R H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 28.1 bits (61), Expect = 5.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+ P+ C+ C F K Q H RTH
Sbjct: 7 GENPYECSECGKAFNRKDQLISHQRTH 33
Score = 27.3 bits (59), Expect = 10.0, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 12/26 (46%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGE 91
Y C C F K L H RTH GE
Sbjct: 11 YECSECGKAFNRKDQLISHQRTHAGE 36
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ C C K F S L H+RVH+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F S + H+ H G+KP G +S
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY+C C SF L H R H+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY C+ C K F S L H+R+H
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVH 35
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 179 THTGERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+ T E+P++C C K F +S+L TH+ +HTGE+
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
T E+PY C C K F +S +T+H+ H G+K G +S
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSS 45
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 87 THTGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+ T E+PY+C C K F +S+L TH+ IH
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIHTG 37
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 31 THTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ T E+P++C C K F +S L TH+ +H
Sbjct: 6 SGTKEKPYKCYECGKAFRTRSNLTTHQVIH 35
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C F T+ NL H HTGE+
Sbjct: 13 YKCYECGKAFRTRSNLTTHQVIHTGEK 39
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+PY C C K F++KS + H+ SH G KP G +S
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+P+ C+ C+K F+ KS L H+R HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C +F K L +H R+HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 240 KPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
KP+GC+ C TF+ KSQ VH R+H V
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGV 38
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C TF+ K L VH R+HTG +P
Sbjct: 13 YGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+PY C C K FS KS L H+R H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTG 37
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
+P+ C C K FS KS L H+R H
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSH 35
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ CA C K FT +S+L H+++HT ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F ++S + H+ H KP G +S
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY C C K F+ +S+L H++I HT+ KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKI-----HTKQKP 40
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C FT + NL H + HT ++P
Sbjct: 13 YICAECGKAFTIRSNLIKHQKIHTKQKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 43 CLKRFSQKSALNTHKR-MHIPYIQYYCD--ACDATFTTKQNLEVHMRTHTGERPYQCEV 98
C + FS + LN HK+ HI + C AC +F K++L+ HM+ H+ R Y CE
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E P++C C K F++K L +H+R H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E PY C C K F+ K + SH+ +H G+KP G +S
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 9 PYHCTACDASFCRKPYLEIHMRTHTGERP 37
PY C C +F RK L H RTH GE+P
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E PY+C C K FS+K L +H+R H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAG 37
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C F+ K L H RTH GE+P
Sbjct: 13 YECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E P++C C K FS+K L +H+R H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTH 35
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 184 RPFQC--AVCSKRFTQKSSLNTHKRVHTGER 212
RPF C + C KRFT+ L HKR HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 8 KPYHCTA--CDASFCRKPYLEIHMRTHTGER 36
+P+ CT C F R L+ H RTHTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+P++C C K + ++ L+ H+RVHTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C C + R+ L+ H R HTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+C C K + ++ L+ H+R+H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTG 37
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++CV C K + ++ L+ H+R+H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH 35
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
+GE+P+ C+ C K FT KS L H+ +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+PY C C K F+ KS L H+ IH
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
Score = 31.6 bits (70), Expect = 0.49, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVG 238
+GE+PY C C K F KS + H+ H G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTG 34
SG KPY C+ C +F K L +H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
G+KP+ C+ C FT KSQ VH H V
Sbjct: 7 GEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 28.1 bits (61), Expect = 5.5, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C K F+ KS L H+ +H
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIH 33
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 184 RPFQCAVCSKRFTQKSSLNTH-KRVHTGERPYACDI 218
+P+ C C K F++ LN H K+VHT ERP+ C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMR-THTGERPFQCVV 42
KPY C +C F R +L H++ HT ERP +C V
Sbjct: 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+PY C+ C K FS+ LN HI +HT ++P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNG----HIKQVHTSERPHKC 44
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 66 YYCDACDATFTTKQNLEVHMR-THTGERPYQCEV 98
Y C +C F+ +L H++ HT ERP++C+V
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+P +C C K F+ S L H+R+HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSG 42
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KP+ C C SF L +H R HTGE P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C C K F+ S + H+ H G+ P G +S
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+P++C C K FS S L H+RIH
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C +F+ L VH R HTGE P
Sbjct: 13 HECRECGKSFSFNSQLIVHQRIHTGENP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F + L TH VHTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K F + + +H H G+KP G +S
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+CE C K F + L TH + +HT +KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTH-----HMVHTGEKP 40
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F +++L H HTGE+P
Sbjct: 13 YKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F + L H HTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P+ C +C RF +L +H R+HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 34.7 bits (78), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY CE+C RF +L +H RIH
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTG 36
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
E+PY C+IC RF + SH H G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C F Q L+ H+R HTG P
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F L+ H+R HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P+ C +C RF L +H R+H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+P++C C K + ++ +L+ H+RVH GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+CE C K ++++ +L+ H+R+H+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMG 37
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C C + R+ L++H R H GE+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C+ C + + NL++H R H GE+
Sbjct: 13 YKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C+ C K + + + H+ H+G+K G +S
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHI 61
E+P++C C K ++++ L+ H+R+H+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHM 36
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+ ++C C K F++ S L+ H+++HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+ Y C+ C K F+ S ++ H+ H G+KP G +S
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERP 93
+Y C+ C F+ L H + HTGE+P
Sbjct: 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
K Y C C F R L H + HTGE+P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+ Y+C C K FS+ S L+ H++I HT +KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKI-----HTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
ER +C+ C K F Q S+ H+R+HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSG 42
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
ER + C C K F S HR H G+KP G +S
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
ER ++C C K F Q S+ H+RI HT +KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRI-----HTGEKP 40
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C RF Q + L H +HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+PY+CE C RF Q + L H IH
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTG 36
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C A F + +L H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
E+PY C+ C RF +++ +H H G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C+ C A F +L H+ HTG P
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGP 39
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+ C+ C K F S SH+ SH G+KP G +S
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+PF+C C K F S +H+R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C+ C F T H R+H+GE+P
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
E+P+ C VC K F + LN H RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY C VC K F + LN H R+H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY+C++C K F + +++ H H + G +S
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGE 35
KPY C C +F +L H+R HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P+ C VC K F + LN H R+H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+P++C C K F + S L H+ +HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 34.3 bits (77), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+PY C C K F S++ H+ H G+KP G +S
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C C F R +L H HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
E+PY+C C K F + S L H+ I HT +KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLI-----HTGEKP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
T E PF+C C K F+ + L+ H+ +H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSG 42
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
T E P+ C+ C K F+ ++++ H+ H G+ P G +S
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENPSGPSS 45
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
T E P++C C K FS + L+ H+ IH
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAG 37
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+GE+ +C+ C K F+ S L H+R+HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENPSG 40
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
SG K + C+ C +F L IH R HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C C TF+ L +H R HTGE P
Sbjct: 11 HECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GE+ + C C K F+ S + H+ H G+ P G +S
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENPSGPSS 43
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+GE+ ++C C K FS S L H+RIH
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTG 35
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 33.9 bits (76), Expect = 0.096, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
+GE+P+ C VC RF +K ++ H R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+PY C VC RF +K ++ H R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTG 34
SG KPY C C F RK + H+R+H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.2 bits (69), Expect = 0.79, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVG 238
+GE+PY+C +C RF K ++ H SH G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C VC RF +K ++ H R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KP+ C C L F K + + H+R+H
Sbjct: 7 GEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 9 PYHCTACDASFCRKPYLEIHMRTHTGERP 37
PY C+ C+ SF K L +H R HT E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 185 PFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
P++C+ C K F+ K L H+R+HT E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
Y C C+ +F+ K L VH R HT E+P
Sbjct: 13 YKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
Query: 93 PYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
PY+C C K FS K L H+R +HT +KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQR-----MHTREKP 40
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 213 PYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
PY C C+K F+ K + H+ H +KP G +S
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 33.5 bits (75), Expect = 0.14, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+GE+ +C C K F+ KS L H+R+HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 30.8 bits (68), Expect = 0.85, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+ ++C C K FS KS L H+RIH
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIH 33
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGE 35
SG K + C C +F K L IH R HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
E+ ++C C F+Q SSL H+ VH GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSG 42
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERP 93
+ C CD F+ +L +H H GE+P
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
K + C CD F + L +H H GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
E+ ++C C+ FSQ SSL H+ +H+
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVG 37
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+ + C CD F+ S + H+ HVG+KP G +S
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKR-VHTGERP 213
++P++C C K F Q +SL H R HTGE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
++PY+C C K F Q +SL H R Y HT +KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWR----YYHTGEKP 41
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 8 KPYHCTACDASFCRKPYLEIHMR-THTGERP 37
KPY C C +F + L H R HTGE+P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 211 ERPYACDICDKRFAVKSYVTSH-RWSHVGDKPFGCTS 246
++PY C C K F + + H R+ H G+KP G +S
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
S KPY C C + K L +H+R HTGE+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C K NL VH+R HTGE+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+P++C CS K++LN H R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 185 PFQCAVCSKRFTQKSSLNTHKRVHTGER 212
P +C C K+FT +L H R+H+GE+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGER 92
C C FTT NL+ H+R H+GE+
Sbjct: 5 CRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.31, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
K Y+C C SF R P L H R H+GE+P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 30.8 bits (68), Expect = 0.93, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+ + C C K F++ L H+R+H+GE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
E+P++C C K F KS L H+R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 31.6 bits (70), Expect = 0.57, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTG 34
KPY C C +F K L +H RTH G
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 30.8 bits (68), Expect = 0.84, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E+PY+C C K F KS L H+R H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVG 238
E+PY C+ C K F KS + H +H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 28.1 bits (61), Expect = 6.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
+KP+ C C F KS VH RTH V
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 27.7 bits (60), Expect = 7.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E+P++C C K F KS L H+R H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.3 bits (59), Expect = 9.0, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLG 158
+KPY C C AF K L V+ T V PS G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG 44
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
E P++C C K F++K L +H++ H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 9 PYHCTACDASFCRKPYLEIHMRTHTGE 35
PY C C F RK L H +TH+G+
Sbjct: 12 PYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E PY+C C K FS+K L +H++ H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
E P++C C K FS+K L +H++ H
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTH 35
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+P+ C C ++F +L H R+HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C C F L+ H+R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
+G+RPF C +C FT K++ H +VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHINYL 120
+G+RP+ C +C F+ K++ H ++H + L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+G+RPF C +CL F+ K+ H ++H
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVH 30
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.56, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
ERPF+C C K F ++S L H R+H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.3 bits (64), Expect = 2.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
ERP++C C K F ++S L H R+H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 28.5 bits (62), Expect = 5.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMH 60
ERPF+C C K F ++S L H R+H
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLH 35
>pdb|3NN4|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
pdb|3NN4|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173k Mutant
Length = 241
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 73 ATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE--------- 123
A F E+ + +G RPY + K+ ++ +L+ R + HT+
Sbjct: 115 AGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTV 174
Query: 124 -DKPYHCTGCDAA----FSRKQYLEVNHTTVLAVMQ 154
K YH TG D + + LE H V A+ Q
Sbjct: 175 KKKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQ 210
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
+GE+P+ CA C + F+ + L H+++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 30.8 bits (68), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C + FS + L H++MH
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+PY C C + FS + L H+++H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 179 THTGERPFQCAVCSKRFTQKSS-----LNTHKRVHTGERPYACDICDKRFAVKSYVTSH 232
T GE ++C VCS+ +T S+ + +HKR + Y C C K F K +T+H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKR---NVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHI 117
R TG +P+QC C++ FS+ L H++ H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTH 32
+G KP+ C CD SF R +L +H + H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMHI 61
R TG +PFQC C + FS+ L H++ H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
R TG +PFQC C + F++ L H++ H
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 206 RVHTGERPYACDICDKRFAVKSYVTSHRWSHV 237
R TG +P+ C CD+ F+ ++ HR H+
Sbjct: 4 RGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
>pdb|3NN3|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
pdb|3NN3|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii R173a Mutant
Length = 241
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 73 ATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE--------- 123
A F E+ + +G RPY + K+ ++ +L+ R + HT+
Sbjct: 115 AGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTV 174
Query: 124 -DKPYHCTGCDAA----FSRKQYLEVNHTTVLAVMQ 154
K YH TG D + + LE H V A+ Q
Sbjct: 175 KAKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQ 210
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 188 CAVCSKRFTQKSSLNTHKRVHTGERPYA 215
C +C K F LN HK H+GE+PY+
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYS 42
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 215 ACDICDKRFAVKSYVTSHRWSHVGDKPF 242
AC+IC K F ++ H+ SH G+KP+
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPY 94
Q C+ C F +L H +H+GE+PY
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPY 41
>pdb|3NN1|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN1|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Imidazole
pdb|3NN2|A Chain A, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|B Chain B, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|C Chain C, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|D Chain D, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
pdb|3NN2|E Chain E, Structure Of Chlorite Dismutase From Candidatus Nitrospira
Defluvii In Complex With Cyanide
Length = 241
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 73 ATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTED-------- 124
A F E+ + +G RPY + K+ ++ +L+ R + HT+
Sbjct: 115 AGFPESMKTELQVNGESGSRPYAIVIPIKKDAEWWALDQEARTALMQEHTQAALPYLKTV 174
Query: 125 --KPYHCTGCDAA----FSRKQYLEVNHTTVLAVMQ 154
K YH TG D + + LE H V A+ Q
Sbjct: 175 KRKLYHSTGLDDVDFITYFETERLEDFHNLVRALQQ 210
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGER 36
KP CT C +FC K L +H RTH ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHT 122
E+P +C C K F KS L H+R H++ H+
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHS 41
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+P +C C K F KS L H+R H ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
+KP CT C F KSQ +H RTH
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 35 ERPFQCVVCLKRFSQKSALNTHKRMHI 61
E+P +C C K F KS L H+R H+
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHV 36
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P C C K F KS + H+ +HV DK G +S
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTH 32
+G KP+ C CD SF R +L +H + H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHI 117
TG +P+QC C+ FS+ L H++ H+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVH 208
TG +PFQC C F++ L H++ H
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMHI 61
TG +PFQC C FS+ L H++ H+
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHM 31
>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1214
Score = 30.8 bits (68), Expect = 0.87, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 94 YQCEVCNKRFSQKSSLNTHKR 114
Y C VCN RFS S+L+ H R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
Length = 1196
Score = 30.8 bits (68), Expect = 0.87, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 94 YQCEVCNKRFSQKSSLNTHKR 114
Y C VCN RFS S+L+ H R
Sbjct: 99 YVCNVCNARFSTMSALSEHLR 119
>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
Sequence Taken From The Third Zinc Finger Domain Of The
Human Transcriptional Repressor Protein Yy1 (Ying And
Yang 1, A Delta Transcription Factor), Nmr, 34
Structures
Length = 28
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 185 PFQCAV--CSKRFTQKSSLNTHKRVHTG 210
PFQC C KRF+ +L TH ++HTG
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 93 PYQCEV--CNKRFSQKSSLNTHKRIH 116
P+QC C KRFS +L TH +IH
Sbjct: 1 PFQCTFXCCGKRFSLDFNLKTHVKIH 26
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKR 206
E P+ C C K FTQ+ SL H+R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKR 114
E PY C C K F+Q+ SL H+R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
ERPY C+ C K F S++ H H +K G +S
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+PY CE C KRF Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVH 208
+P+ C C KRF Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHIN 118
+ + CE CNK F K SL H RIH N
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTN 34
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+ F C C+K F K SL H R+HT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
+ C+ C+ F K +L+ H+R HT E+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHIN 118
Y+C +C + F +KS+L+ H+R+H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVH 208
++C +C + F +KS+L+ H+RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 183 ERPFQC--AVCSKRFTQKSSLNTHKRVHTGERP 213
E+PF C C RF++ L+ H+R H+G +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 211 ERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
E+P+AC C RF+ ++ HR SH G KP G +S
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHT 209
E PF+C+ C + FTQ++ L H+R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 9 PYHCTACDASFCRKPYLEIHMRTHT 33
P+ C+ CD F ++ YL H RTH
Sbjct: 12 PFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
E P++C C++ F+Q++ L H+R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTH 35
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
++H R H +RPF+C CS Q S+L+ H + G+
Sbjct: 26 RIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 78 KQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH-KRIH 116
K L +H R H +RP++C C+ Q S+L+ H K+ H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 22 KPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTH-KRMH 60
K L IH R H +RPF+C C Q S L+ H K+ H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 50 KSALNTHKRMHIPYIQYYCDACDATFTTKQ--NLEVHMRTHTGE 91
K+AL H+R+H + C+ C +F TKQ NL HM+ G+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYC--SFDTKQPSNLSKHMKKFHGD 63
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 198 KSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGD 239
K++L H+R+H +RP+ C+ C S ++ H GD
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+P+QC+ C K F+ L H HT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERP 37
KPY C+ C SF L H THT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+PY C C K F+ +T H +H +KP G +S
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
>pdb|2EN8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
171- 203) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
E+ C C K F S+L H+RVH GE+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 7 NKPYHCTACDASFCRKPYLEIHMRTHTGER 36
K + C C +FC L IH R H GE+
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHMGEK 39
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 92 RPYQCEVCNKRFSQKSSLNTH 112
+ YQC+ C KRF+ S+L TH
Sbjct: 1 KTYQCQYCEKRFADSSNLKTH 21
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+ + C++C K+F K +L +HK +H
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLH 32
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGD 239
+ + CD+C K+F K + SH+ H D
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 188 CAVCSKRFTQKSSLNTHKRVHTGE 211
C +C K+F K +L +HK +HT +
Sbjct: 12 CDMCGKKFKSKGTLKSHKLLHTAD 35
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGER 36
C C +F R+ YL+ H R+HT E+
Sbjct: 5 CEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 272 VCNVCGRSFVRDSYLIRH 289
VC VC R+F R YL RH
Sbjct: 4 VCEVCTRAFARQEYLKRH 21
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 40 CVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHM 85
C VC + F+ K A H R+ + C C ATF + L H+
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHI 76
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna
Binding Domain (Zinc Finger 1)
Length = 37
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 57 KRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
K+ HI +IQ C + +L H+R HTGER
Sbjct: 6 KKQHICHIQ----GCGKVYGKTSHLRAHLRWHTGER 37
>pdb|3IUF|A Chain A, Crystal Structure Of The C2h2-Type Zinc Finger Domain Of
Human Ubi-D4
Length = 48
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 211 ERPYACDICDKRFAVKSYVTSH 232
++PYACDIC KR+ + ++ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
Score = 27.7 bits (60), Expect = 8.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTH-KRIHINYLHTEDK 125
++PY C++C KR+ + L+ H H+ EDK
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYAHSHLAEEEGEDK 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGER 212
F C VC++ F ++ +L H R HT E+
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
E+PFQC C F+ SL H R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.132 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,861,366
Number of Sequences: 62578
Number of extensions: 338345
Number of successful extensions: 3508
Number of sequences better than 100.0: 199
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1628
Number of HSP's gapped (non-prelim): 1591
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)