RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4830
(292 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 203 bits (518), Expect = 8e-66
Identities = 78/227 (34%), Positives = 112/227 (49%), Gaps = 42/227 (18%)
Query: 18 SFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI---PYIQYYCDACDAT 74
S GE+P+ C C K FS+ L H+R H PY C C +
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYK---CPECGKS 58
Query: 75 FTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDA 134
F+ K++L H RTHTGE+PY+C C K FSQ+++L H+R HT +KPY C C
Sbjct: 59 FSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-----HTGEKPYACPECGK 113
Query: 135 AFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKR 194
+FS+ +L + H RTHTGE+P++C C K
Sbjct: 114 SFSQLAHL-------------------------------RAHQRTHTGEKPYKCPECGKS 142
Query: 195 FTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
F+++ +L+TH+R HTGE+PY C C K F+ + + H+ +H G K
Sbjct: 143 FSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 195 bits (498), Expect = 1e-62
Identities = 83/213 (38%), Positives = 107/213 (50%), Gaps = 42/213 (19%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI-- 61
G KPY C C SF R +L H RTHTGE+P++C C K FS K L H+R H
Sbjct: 16 EPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE 75
Query: 62 -PYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYL 120
PY C C +F+ + NL H RTHTGE+PY C C K FSQ + L H+R
Sbjct: 76 KPYK---CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT----- 127
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
HT +KPY C C +FSR+ L H RTH
Sbjct: 128 HTGEKPYKCPECGKSFSREDNL-------------------------------HTHQRTH 156
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
TGE+P++C C K F+++ +LN H+R HTG++
Sbjct: 157 TGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
Score = 187 bits (477), Expect = 2e-59
Identities = 72/217 (33%), Positives = 103/217 (47%), Gaps = 37/217 (17%)
Query: 74 TFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCD 133
+ + GE+PY C C K FS+ L H+R H T +KPY C C
Sbjct: 2 SEFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH-----TGEKPYKCPECG 56
Query: 134 AAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSK 193
+FS K+ L H RTHTGE+P++C C K
Sbjct: 57 KSFSDKKDL-------------------------------TRHQRTHTGEKPYKCPECGK 85
Query: 194 RFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTS 253
F+Q+++L H+R HTGE+PYAC C K F+ +++ +H+ +H G+KP+ C C +F+
Sbjct: 86 SFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSR 145
Query: 254 KSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ H RT HT + C CG+SF R L HQ
Sbjct: 146 EDNLHTHQRT-HTGEKPYKCPECGKSFSRRDALNVHQ 181
Score = 38.6 bits (91), Expect = 8e-04
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 249 LTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
++ S + C CG+SF R +L HQ
Sbjct: 1 ISEFGSSSSVAQAAL-EPGEKPYACPECGKSFSRSDHLAEHQ 41
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 158 bits (401), Expect = 4e-48
Identities = 49/220 (22%), Positives = 76/220 (34%), Gaps = 54/220 (24%)
Query: 28 HMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHI---PYIQYYCD--ACDATFTTKQN 80
+ + C C +++ L H H P+ C C+ FT+ +
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFP---CKEEGCEKGFTSLHH 59
Query: 81 LEVHMRTHTGERPYQCE--VCNKRFSQKSSLNTHKRIHINYLHTEDK--PYHCTG--CDA 134
L H THTGE+ + C+ C+ RF+ K+++ H K Y C C
Sbjct: 60 LTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF-----HNIKICVYVCHFENCGK 114
Query: 135 AFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQC--AVCS 192
AF + L +VH +HT + P++C C
Sbjct: 115 AFKKHNQL-------------------------------KVHQFSHTQQLPYECPHEGCD 143
Query: 193 KRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSH 232
KRF+ S L H++VH G D C + H
Sbjct: 144 KRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKH 183
Score = 128 bits (325), Expect = 8e-37
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 15/159 (9%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQC--VVCLKRFSQKSALNTH 56
+ H+G KP+ C C+ F +L H THTGE+ F C C RF+ K+ + H
Sbjct: 34 LCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 93
Query: 57 KRMHI--PYIQYYCDA--CDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLN 110
Y C C F L+VH +HT + PY+C E C+KRFS S L
Sbjct: 94 FNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 153
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTV 149
H+++H C +
Sbjct: 154 RHEKVH-----AGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Score = 113 bits (284), Expect = 8e-31
Identities = 51/191 (26%), Positives = 68/191 (35%), Gaps = 49/191 (25%)
Query: 112 HKRIHINYLHTEDKPYHCTG--CDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTS 169
K + K Y C+ C AA+++ L
Sbjct: 3 EKALP-----VVYKRYICSFADCGAAYNKNWKL--------------------------- 30
Query: 170 LFSHQVHMRTHTGERPFQC--AVCSKRFTQKSSLNTHKRVHTGERPYACD--ICDKRFAV 225
Q H+ HTGE+PF C C K FT L H HTGE+ + CD CD RF
Sbjct: 31 ----QAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT 86
Query: 226 KSYVTSHRWSHVGDK--PFGCTS--CHLTFTSKSQFAVHLRTHHTVGANHVCN--VCGRS 279
K+ + H K + C C F +Q VH + HT + C C +
Sbjct: 87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS-HTQQLPYECPHEGCDKR 145
Query: 280 FVRDSYLIRHQ 290
F S L RH+
Sbjct: 146 FSLPSRLKRHE 156
Score = 99.6 bits (249), Expect = 1e-25
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGER--PFQCVV--CLKRFSQKSALN 54
H+G K + C CD F K ++ H + + C C K F + + L
Sbjct: 64 SLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLK 123
Query: 55 THKRMHI---PYIQYYC--DACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSL 109
H+ H PY C + CD F+ L+ H + H G + + C+ +
Sbjct: 124 VHQFSHTQQLPYE---CPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLY 180
Query: 110 NTH-KRIH 116
H H
Sbjct: 181 LKHVAECH 188
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 140 bits (356), Expect = 7e-42
Identities = 56/212 (26%), Positives = 75/212 (35%), Gaps = 67/212 (31%)
Query: 8 KPYHCTACDASFCRKPYLEIHM---RTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYI 64
C F + L H+ H + F C
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG-------------------- 41
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHT 122
C F + L VHMR HTGE+P++C E C K +S+ +L TH R H T
Sbjct: 42 ---CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSH-----T 93
Query: 123 EDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+KPY C GC AFS + HQ RTH
Sbjct: 94 GEKPYMCEHEGCSKAFSN----------------------------ASDRAKHQ--NRTH 123
Query: 181 TGERPFQCAV--CSKRFTQKSSLNTHKRVHTG 210
+ E+P+ C + C+KR+T SSL H + G
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 131 bits (332), Expect = 2e-38
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 51/188 (27%)
Query: 66 YYCDACDATFTTKQNLEVHM---RTHTGERPYQCEVCN-----KRFSQKSSLNTHKRIHI 117
D C F +++ L H+ H + + C + F + L H R H
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH- 62
Query: 118 NYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQV 175
T +KP+ CT GC ++SR + L +
Sbjct: 63 ----TGEKPHKCTFEGCRKSYSRLENL-------------------------------KT 87
Query: 176 HMRTHTGERPFQC--AVCSKRFTQKSSLNTHK-RVHTGERPYACDI--CDKRFAVKSYVT 230
H+R+HTGE+P+ C CSK F+ S H+ R H+ E+PY C + C KR+ S +
Sbjct: 88 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLR 147
Query: 231 SHRWSHVG 238
H + G
Sbjct: 148 KHVKTVHG 155
Score = 131 bits (332), Expect = 3e-38
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 43/186 (23%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVL 150
E + + C++ F + L H +H E K + C + +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEH--IHGERKEFVCHWGGCSRELRP---------- 48
Query: 151 AVMQPSLGNNTWSAKFLTSLFSHQ----VHMRTHTGERPFQCAV--CSKRFTQKSSLNTH 204
F Q VHMR HTGE+P +C C K +++ +L TH
Sbjct: 49 --------------------FKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Query: 205 KRVHTGERPYAC--DICDKRFAVKSYVTSHRW-SHVGDKPFGCTS--CHLTFTSKSQFAV 259
R HTGE+PY C + C K F+ S H+ +H +KP+ C C +T S
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 260 HLRTHH 265
H++T H
Sbjct: 149 HVKTVH 154
Score = 112 bits (283), Expect = 5e-31
Identities = 48/191 (25%), Positives = 68/191 (35%), Gaps = 76/191 (39%)
Query: 4 HSGNKPYHCTACDASFCRKP-----YLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTH 56
H K + C S +P L +HMR HTGE+P +C C K +S+
Sbjct: 29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLE----- 83
Query: 57 KRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCE--VCNKRFSQKSSLNTHK- 113
NL+ H+R+HTGE+PY CE C+K FS S H+
Sbjct: 84 -----------------------NLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN 120
Query: 114 RIHINYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLF 171
R H+ +KPY C GC ++ L
Sbjct: 121 RT-----HSNEKPYVCKLPGCTKRYTDPSSL----------------------------- 146
Query: 172 SHQVHMRTHTG 182
+ H++T G
Sbjct: 147 --RKHVKTVHG 155
Score = 105 bits (264), Expect = 3e-28
Identities = 39/177 (22%), Positives = 58/177 (32%), Gaps = 39/177 (22%)
Query: 125 KPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGER 184
GC F L H H +
Sbjct: 2 TDCRWDGCSQEFDS----------------------------QEQLVHHINSEHIHGERK 33
Query: 185 PFQCAVC-----SKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHV 237
F C + F + L H R HTGE+P+ C C K ++ + +H SH
Sbjct: 34 EFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT 93
Query: 238 GDKPFGCT--SCHLTFTSKSQFAVHLRTHHTVGANHVCNV--CGRSFVRDSYLIRHQ 290
G+KP+ C C F++ S A H H+ +VC + C + + S L +H
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 62.6 bits (153), Expect = 3e-12
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHM-RTHTGERPFQCVV--CLKRFSQKSALNT 55
++ H+G KPY C C +F H RTH+ E+P+ C + C KR++ S+L
Sbjct: 89 LRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRK 148
Query: 56 HKRMH 60
H +
Sbjct: 149 HVKTV 153
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 138 bits (350), Expect = 4e-41
Identities = 45/188 (23%), Positives = 63/188 (33%), Gaps = 49/188 (26%)
Query: 43 CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQ------- 95
+ K + + +CD TF+T L H+ P Q
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 96 --CEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLA 151
C K F K L H R+ HT +KP+ C GC F+R + L
Sbjct: 63 EECPREGKSFKAKYKLVNHIRV-----HTGEKPFPCPFPGCGKIFARSENL--------- 108
Query: 152 VMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHT 209
++H RTHTGE+PF+C C +RF S H VHT
Sbjct: 109 ----------------------KIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 210 GERPYACD 217
++
Sbjct: 147 SDKSGPSS 154
Score = 135 bits (342), Expect = 7e-40
Identities = 43/188 (22%), Positives = 61/188 (32%), Gaps = 49/188 (26%)
Query: 71 CDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYH-- 128
++ + + + C++ FS L TH + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTME-----HVGGPEQNN 57
Query: 129 -------CTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHT 181
C +F K L H+R HT
Sbjct: 58 HVCYWEECPREGKSFKAKYKL-------------------------------VNHIRVHT 86
Query: 182 GERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHV 237
GE+PF C C K F + +L HKR HTGE+P+ C+ CD+RFA S H H
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Query: 238 GDKPFGCT 245
DK +
Sbjct: 147 SDKSGPSS 154
Score = 128 bits (324), Expect = 4e-37
Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 24/144 (16%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQ---------CVVCLKRFSQKSALN 54
+CD +F L H+ P Q C K F K L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 55 THKRMHI---PYIQYYCDA--CDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKS 107
H R+H P+ C C F +NL++H RTHTGE+P++CE C++RF+ S
Sbjct: 80 NHIRVHTGEKPFP---CPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 108 SLNTHKRIHINYLHTEDKPYHCTG 131
H + HT DK +G
Sbjct: 137 DRKKHMHV-----HTSDKSGPSSG 155
Score = 123 bits (312), Expect = 2e-35
Identities = 40/175 (22%), Positives = 56/175 (32%), Gaps = 49/175 (28%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH---IPYIQYY------CDACDATFTT 77
+ C + FS L TH M P + C +F
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKA 74
Query: 78 KQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCD 133
K L H+R HTGE+P+ C C K F++ +L HKR HT +KP+ C GCD
Sbjct: 75 KYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-----HTGEKPFKCEFEGCD 129
Query: 134 AAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQC 188
F+ + HM HT ++
Sbjct: 130 RRFANSSDR-------------------------------KKHMHVHTSDKSGPS 153
Score = 96.6 bits (241), Expect = 6e-25
Identities = 31/141 (21%), Positives = 41/141 (29%), Gaps = 14/141 (9%)
Query: 163 SAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA------- 215
S + + C + F+ L TH + P
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 216 --CDICDKRFAVKSYVTSHRWSHVGDKPFGCTS--CHLTFTSKSQFAVHLRTHHTVGANH 271
C K F K + +H H G+KPF C C F +H RT HT
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT-HTGEKPF 121
Query: 272 VCNV--CGRSFVRDSYLIRHQ 290
C C R F S +H
Sbjct: 122 KCEFEGCDRRFANSSDRKKHM 142
Score = 29.9 bits (68), Expect = 0.46
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 1/46 (2%)
Query: 246 SCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQN 291
S + Q + C R+F L+ H
Sbjct: 2 SSGSSGQPIKQELSCKWID-EAQLSRPKKSCDRTFSTMHELVTHVT 46
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 132 bits (335), Expect = 4e-39
Identities = 43/120 (35%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI-- 61
SG+ C C F K YL++H R HTGE+PF+C C K + +K L H+ +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 62 ----PYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHK-RIH 116
+ C C TF + L +HM +HTGE PY+C C+++F QK L +H ++H
Sbjct: 62 RSEQVFT---CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 132 bits (335), Expect = 4e-39
Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 62/182 (34%)
Query: 32 HTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGE 91
+G +C C K+F K L+VH R HTGE
Sbjct: 2 SSGSSGVECPTCHKKFLSKY----------------------------YLKVHNRKHTGE 33
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLA 151
+P++C C K + +K +L H+ + ++ ++ + C+ C F R+ L
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNC--MNRSEQVFTCSVCQETFRRRMEL--------- 82
Query: 152 VMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHK-RVHTG 210
++HM +HTGE P++C+ CS++F QK L +H ++H+G
Sbjct: 83 ----------------------RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Query: 211 ER 212
Sbjct: 121 PS 122
Score = 131 bits (332), Expect = 1e-38
Identities = 41/154 (26%), Positives = 59/154 (38%), Gaps = 34/154 (22%)
Query: 88 HTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHT 147
+G +C C+K+F K L H R H T +KP+ C C + RK
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH-----TGEKPFECPKCGKCYFRK-------- 48
Query: 148 TVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRV 207
+L H+ + E+ F C+VC + F ++ L H
Sbjct: 49 --------------------ENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVS 88
Query: 208 HTGERPYACDICDKRFAVKSYVTSHRW-SHVGDK 240
HTGE PY C C ++F K + SH H G
Sbjct: 89 HTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 114 bits (288), Expect = 4e-32
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 35/148 (23%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ C C F K YL +VH R H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYL-------------------------------KVHNRKH 30
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKR---VHTGERPYACDICDKRFAVKSYVTSHRWSHV 237
TGE+PF+C C K + +K +L H+ ++ E+ + C +C + F + + H SH
Sbjct: 31 TGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHT 90
Query: 238 GDKPFGCTSCHLTFTSKSQFAVH-LRTH 264
G+ P+ C+SC F K H ++ H
Sbjct: 91 GEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 113 bits (286), Expect = 7e-32
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 180 HTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSH---RWSH 236
+G +C C K+F K L H R HTGE+P+ C C K + K + H +
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 237 VGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQNK 292
++ F C+ C TF + + +H+ + HT + C+ C + F++ L H K
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVS-HTGEMPYKCSSCSQQFMQKKDLQSHMIK 116
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 126 bits (320), Expect = 3e-37
Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 36/130 (27%)
Query: 87 THTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNH 146
+ P++CEVC K FS+K L TH R HT KPY C CD A + L
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC-----HTGVKPYKCKTCDYAAADSSSL---- 52
Query: 147 TTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKR 206
H+R H+ ERPF+C +C S L H R
Sbjct: 53 ---------------------------NKHLRIHSDERPFKCQICPYASRNSSQLTVHLR 85
Query: 207 VHTGERPYAC 216
HTG+ +
Sbjct: 86 SHTGDSGPSS 95
Score = 117 bits (296), Expect = 1e-33
Identities = 34/126 (26%), Positives = 47/126 (37%), Gaps = 33/126 (26%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPY 63
+ P+ C C F RK L+ HMR HTG +P++C C + S+LN H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL------ 56
Query: 64 IQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
R H+ ERP++C++C S L H R HT
Sbjct: 57 ----------------------RIHSDERPFKCQICPYASRNSSQLTVHLRS-----HTG 89
Query: 124 DKPYHC 129
D
Sbjct: 90 DSGPSS 95
Score = 109 bits (274), Expect = 2e-30
Identities = 37/124 (29%), Positives = 46/124 (37%), Gaps = 31/124 (25%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
P+ C C FSRK L + HMR H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKL-------------------------------KTHMRCH 31
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
TG +P++C C SSLN H R+H+ ERP+ C IC S +T H SH GD
Sbjct: 32 TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDS 91
Query: 241 PFGC 244
Sbjct: 92 GPSS 95
Score = 107 bits (269), Expect = 1e-29
Identities = 34/86 (39%), Positives = 44/86 (51%)
Query: 179 THTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVG 238
+ P +C VC K F++K L TH R HTG +PY C CD A S + H H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Query: 239 DKPFGCTSCHLTFTSKSQFAVHLRTH 264
++PF C C + SQ VHLR+H
Sbjct: 62 ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 82.9 bits (206), Expect = 2e-20
Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 28/96 (29%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
M+ H+G KPY C CD + L H+R H+ ERPF+C +C S
Sbjct: 28 MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS--------- 78
Query: 61 IPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQC 96
L VH+R+HTG+
Sbjct: 79 -------------------QLTVHLRSHTGDSGPSS 95
Score = 28.5 bits (65), Expect = 0.75
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C VCG+ F R L H
Sbjct: 11 CEVCGKCFSRKDKLKTHM 28
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 127 bits (322), Expect = 3e-37
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 12/121 (9%)
Query: 5 SGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMH 60
S +P+ C C+ + + +L++H R HTGE+P+QC C +RFS+ L H+R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 61 I---PYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRI 115
P+ C C F+ +L+ H RTHTGE+P+ C C K+F++ L H +
Sbjct: 62 TGVKPFQ---CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Query: 116 H 116
H
Sbjct: 119 H 119
Score = 124 bits (314), Expect = 4e-36
Identities = 49/154 (31%), Positives = 67/154 (43%), Gaps = 42/154 (27%)
Query: 89 TGERPYQCE--VCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG--CDAAFSRKQYLEV 144
+ +RP+ C CNKR+ + S L H R H T +KPY C C+ FSR L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKH-----TGEKPYQCDFKDCERRFSRSDQL-- 54
Query: 145 NHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTH 204
+ H R HTG +PFQC C ++F++ L TH
Sbjct: 55 -----------------------------KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH 85
Query: 205 KRVHTGERPYACDI--CDKRFAVKSYVTSHRWSH 236
R HTGE+P++C C K+FA + H H
Sbjct: 86 TRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 109 bits (276), Expect = 2e-30
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 37/149 (24%)
Query: 122 TEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRT 179
+E +P+ C GC+ + + +L Q+H R
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHL-------------------------------QMHSRK 30
Query: 180 HTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHV 237
HTGE+P+QC C +RF++ L H+R HTG +P+ C C ++F+ ++ +H +H
Sbjct: 31 HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
Query: 238 GDKPFGCTS--CHLTFTSKSQFAVHLRTH 264
G+KPF C C F + H H
Sbjct: 91 GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 102 bits (256), Expect = 2e-27
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 7/116 (6%)
Query: 181 TGERPFQC--AVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSH 236
+ +RPF C C+KR+ + S L H R HTGE+PY CD C++RF+ + H+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 237 VGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNV--CGRSFVRDSYLIRHQ 290
G KPF C +C F+ H RT HT C C + F R L+RH
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRT-HTGEKPFSCRWPSCQKKFARSDELVRHH 116
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 123 bits (311), Expect = 1e-35
Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 43/155 (27%)
Query: 66 YYCDA--CDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
C C F + H+ TH G R + C C K F + S L H+ + HT
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLV-----HTG 59
Query: 124 DKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHT 181
+KP+ CT GC FS L + H+R HT
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNL-------------------------------RTHVRIHT 88
Query: 182 GERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPY 214
G+RP+ C C+K+F Q ++L +H H +
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 123 bits (310), Expect = 2e-35
Identities = 45/158 (28%), Positives = 61/158 (38%), Gaps = 43/158 (27%)
Query: 91 ERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
R C + C K F S++ H H + + C C AF L
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH------GPRVHVCAECGKAFVESSKL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKR 206
+ H HTGE+PFQC C KRF+ +L TH R
Sbjct: 51 -------------------------KRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Query: 207 VHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPF 242
+HTG+RPY C C+K+FA + + SH +H K
Sbjct: 86 IHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
Score = 117 bits (296), Expect = 2e-33
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 14/127 (11%)
Query: 8 KPYHCTA--CDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI---P 62
+ C C F + H+ TH G R C C K F + S L H+ +H P
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP 62
Query: 63 YIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHINYL 120
+ Q + C F+ NL H+R HTG+RPY C CNK+F+Q ++L +H
Sbjct: 63 F-QCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT----- 116
Query: 121 HTEDKPY 127
H + K
Sbjct: 117 HAKAKNN 123
Score = 115 bits (290), Expect = 2e-32
Identities = 45/161 (27%), Positives = 59/161 (36%), Gaps = 47/161 (29%)
Query: 35 ERPFQCVV--CLKRFSQKSALNTHKRMH--IPYIQYYCDACDATFTTKQNLEVHMRTHTG 90
R C C K F SA+ H H ++ C C F L+ H HTG
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTHGPRVHV---CAECGKAFVESSKLKRHQLVHTG 59
Query: 91 ERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHC--TGCDAAFSRKQYLEVNH 146
E+P+QC C KRFS +L TH RIH T D+PY C GC+ F++ L
Sbjct: 60 EKPFQCTFEGCGKRFSLDFNLRTHVRIH-----TGDRPYVCPFDGCNKKFAQSTNL---- 110
Query: 147 TTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQ 187
+ H+ TH + Q
Sbjct: 111 ---------------------------KSHILTHAKAKNNQ 124
Score = 99.1 bits (248), Expect = 3e-26
Identities = 40/148 (27%), Positives = 57/148 (38%), Gaps = 38/148 (25%)
Query: 123 EDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
E + C GC F + + H+ TH
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAM-------------------------------RKHLHTH 30
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVG 238
G R CA C K F + S L H+ VHTGE+P+ C C KRF++ + +H H G
Sbjct: 31 -GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTG 89
Query: 239 DKPFGCTS--CHLTFTSKSQFAVHLRTH 264
D+P+ C C+ F + H+ TH
Sbjct: 90 DRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 89.5 bits (223), Expect = 1e-22
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
R C C+K F S++ H H G R + C C K F S + H+ H G+K
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK 61
Query: 241 PFGCTS--CHLTFTSKSQFAVHLRTHHTVGANHVCNV--CGRSFVRDSYLIRHQ 290
PF CT C F+ H+R HT +VC C + F + + L H
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRTHVRI-HTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 119 bits (301), Expect = 2e-34
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 24 YLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI---PYIQYYCDACDATFTTKQN 80
++ F C C + F++ L H+R H PY CD C F + +
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT---CDICHKAFRRQDH 60
Query: 81 LEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
L H H+ E+P++C+ C K F Q +L HK + H +
Sbjct: 61 LRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL-----HMQTSSPTAA 105
Score = 112 bits (282), Expect = 2e-31
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 36/141 (25%)
Query: 106 KSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAK 165
S + + K + C C F++ L
Sbjct: 2 SSGSSGGRLPS-----KTKKEFICKFCGRHFTKSYNL----------------------- 33
Query: 166 FLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAV 225
+H RTHT ERP+ C +C K F ++ L H+ +H+ E+P+ C C K F
Sbjct: 34 --------LIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85
Query: 226 KSYVTSHRWSHVGDKPFGCTS 246
+ H+ H+ S
Sbjct: 86 SRTLAVHKTLHMQTSSPTAAS 106
Score = 109 bits (274), Expect = 2e-30
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHR 233
++ F C C + FT+ +L H+R HT ERPY CDIC K F + ++ HR
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Query: 234 WSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
+ H +KPF C C F AVH H
Sbjct: 66 YIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 87.9 bits (219), Expect = 3e-22
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 198 KSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQF 257
S + + ++ + C C + F + H +H ++P+ C CH F +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL 61
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
H H+ C CG+ F + L H+
Sbjct: 62 RDHRYI-HSKEKPFKCQECGKGFCQSRTLAVHK 93
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 116 bits (293), Expect = 4e-33
Identities = 35/175 (20%), Positives = 52/175 (29%), Gaps = 67/175 (38%)
Query: 29 MRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTH 88
+G++ + C C K F+ KS + HM H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKS----------------------------QRDRHMSMH 32
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
G RPY C VC K+F K L H +I HT KPY C C F +
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKI-----HTGIKPYECNICAKRFMWRDSF------ 81
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNT 203
H + + ++ A + T+ S ++
Sbjct: 82 ---------------------------HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 114 bits (287), Expect = 4e-32
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
SG+K Y C C SF K + HM H G RP+ C VC K+F K L H ++H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 61 IPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNT 111
Y C+ C F + + H + + Y+ + ++ S ++
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPSS 109
Score = 103 bits (259), Expect = 6e-28
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 177 MRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSH 236
+G++ + C C K FT KS + H +H G RPY C +C K+F +K ++ H H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 60
Query: 237 VGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYL 286
G KP+ C C F + F H + ++ ++ S
Sbjct: 61 TGIKPYECNICAKRFMWRDSF--HRHV-TSCTKSYEAAKAEQNTTEASGP 107
Score = 102 bits (258), Expect = 6e-28
Identities = 36/174 (20%), Positives = 51/174 (29%), Gaps = 67/174 (38%)
Query: 85 MRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEV 144
+G++ Y C+ C +F+ K
Sbjct: 2 SSGSSGDKLYPCQ----------------------------------CGKSFTHKSQR-- 25
Query: 145 NHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTH 204
HM H G RP+ C VC K+F K L H
Sbjct: 26 -----------------------------DRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Query: 205 KRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFA 258
++HTG +PY C+IC KRF + HR K + T S +
Sbjct: 57 MKIHTGIKPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 108 bits (273), Expect = 2e-30
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 30/111 (27%)
Query: 8 KPYHCTA--CDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQ 65
+PY C CD F + L H+R HTG++PFQC +C++ FS+ L TH
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH--------- 53
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+RTHTGE+P+ C++C ++F++ H +IH
Sbjct: 54 -------------------IRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 104 bits (262), Expect = 9e-29
Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 38/124 (30%)
Query: 91 ERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
ERPY C V C++RFSQ SL H RIH T KP+ C C FSR +L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIH-----TGQKPFQCRICMRNFSRSDHL------ 50
Query: 149 VLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
H+RTHTGE+PF C +C ++F + H ++H
Sbjct: 51 -------------------------TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Query: 209 TGER 212
++
Sbjct: 86 LRQK 89
Score = 95.2 bits (238), Expect = 3e-25
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 33/118 (27%)
Query: 125 KPYHCTG--CDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTG 182
+PY C CD FS+ L H+R HTG
Sbjct: 3 RPYACPVESCDRRFSQSGSL-------------------------------TRHIRIHTG 31
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
++PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA H H+ K
Sbjct: 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 92.9 bits (232), Expect = 2e-24
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 38/121 (31%)
Query: 66 YYCDA--CDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
Y C CD F+ +L H+R HTG++P+QC +C + FS+ L TH R H T
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH-----TG 59
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE 183
+KP+ C C F+R + H + H +
Sbjct: 60 EKPFACDICGRKFARSDER-------------------------------KRHTKIHLRQ 88
Query: 184 R 184
+
Sbjct: 89 K 89
Score = 92.5 bits (231), Expect = 3e-24
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
ERP+ C V C +RF+Q SL H R+HTG++P+ C IC + F+ ++T+H +H G+K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 241 PFGCTSCHLTFTSKSQFAVHLRTH 264
PF C C F + H + H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 81.0 bits (201), Expect = 9e-20
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+++H+G KP+ C C +F R +L H+RTHTGE+PF C +C ++F++ H ++H
Sbjct: 26 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 49.0 bits (118), Expect = 4e-08
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
++ H+G KP+ C C F R + H + H ++
Sbjct: 54 IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 103 bits (260), Expect = 2e-28
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 39/128 (30%)
Query: 88 HTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHT 147
+G CE+C K F LN HK H+ +KPY C C F RK +
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLS-----HSGEKPYSCPVCGLRFKRKDRM----- 51
Query: 148 TVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE--RPFQCAVCSKRFTQKSSLNTH- 204
H+R+H G +P+ C C K F++ LN H
Sbjct: 52 --------------------------SYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHI 85
Query: 205 KRVHTGER 212
K+VH+G
Sbjct: 86 KQVHSGPS 93
Score = 101 bits (254), Expect = 2e-27
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 31/116 (26%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPY 63
SG+ C C F +L H +H+GE+P+ C VC RF +K ++ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH------- 54
Query: 64 IQYYCDACDATFTTKQNLEVHMRTHTGE--RPYQCEVCNKRFSQKSSLNTH-KRIH 116
+R+H G +PY C+ C K FS+ LN H K++H
Sbjct: 55 ---------------------VRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 96.0 bits (240), Expect = 2e-25
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 180 HTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVG- 238
+G C +C K F LN HK H+GE+PY+C +C RF K ++ H SH G
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS 61
Query: 239 -DKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
KP+ C SC F+ H++ H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 92.6 bits (231), Expect = 4e-24
Identities = 31/113 (27%), Positives = 40/113 (35%), Gaps = 35/113 (30%)
Query: 32 HTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGE 91
+G C +C K F LN H +H+GE
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRH----------------------------KLSHSGE 33
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHT--EDKPYHCTGCDAAFSRKQYL 142
+PY C VC RF +K ++ H R H KPY C C FSR +L
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRS-----HDGSVGKPYICQSCGKGFSRPDHL 81
Score = 89.1 bits (222), Expect = 9e-23
Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 34/123 (27%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ C C F +L H +H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHL-------------------------------NRHKLSH 30
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGE--RPYACDICDKRFAVKSYVTSH-RWSHV 237
+GE+P+ C VC RF +K ++ H R H G +PY C C K F+ ++ H + H
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Query: 238 GDK 240
G
Sbjct: 91 GPS 93
Score = 28.6 bits (65), Expect = 0.80
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C +CG+ F +L RH+
Sbjct: 10 CEICGKIFRDVYHLNRHK 27
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 101 bits (255), Expect = 9e-28
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 34/119 (28%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
+ C C F+ +L H+RTHTGE+P+ C++C ++F++ H+ I
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI-----QHI-L 57
Query: 126 PYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGER 184
P + S+ L + ++ GER
Sbjct: 58 PILEDKVEELLSK----------------------------NYHLENEVARLKKLVGER 88
Score = 99.1 bits (248), Expect = 1e-26
Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 32/112 (28%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYY 67
KP+ C C +F R +L H+RTHTGE+PF C +C ++F++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD---------------- 45
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHK---RIH 116
+ H P + + S+ L +
Sbjct: 46 ------------ERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 94.5 bits (236), Expect = 6e-25
Identities = 24/124 (19%), Positives = 37/124 (29%), Gaps = 40/124 (32%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLA 151
+P+QC +C + FS+ L TH R HT +KP+ C C F+R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-----HTGEKPFACDICGRKFARSDER--------- 47
Query: 152 VMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHK---RVH 208
+ H P + ++ L +
Sbjct: 48 ----------------------KRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKL 84
Query: 209 TGER 212
GER
Sbjct: 85 VGER 88
Score = 89.1 bits (222), Expect = 8e-23
Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 35/119 (29%)
Query: 125 KPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGER 184
KP+ C C FSR +L H+RTHTGE+
Sbjct: 2 KPFQCRICMRNFSRSDHL-------------------------------TTHIRTHTGEK 30
Query: 185 PFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS---HVGDK 240
PF C +C ++F + H+ + P D ++ + ++ + VG++
Sbjct: 31 PFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 84.5 bits (210), Expect = 3e-21
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFG 243
+PFQC +C + F++ L TH R HTGE+P+ACDIC ++FA HR P
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ-HILPIL 60
Query: 244 CTSCHLTFTSKSQFAVH---LRTH 264
+ L+
Sbjct: 61 EDKVEELLSKNYHLENEVARLKKL 84
Score = 63.7 bits (156), Expect = 2e-13
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANH 271
+P+ C IC + F+ ++T+H +H G+KPF C C F + H H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH--ILPI 59
Query: 272 VCNVCGRSFVRDSYLIRHQ 290
+ + ++ +L
Sbjct: 60 LEDKVEELLSKNYHLENEV 78
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 98.7 bits (247), Expect = 1e-26
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGE--RPYACDICDKRFAVKSYVTS 231
RTH+GE+P++C +C RFTQ ++ H E + C CD A KS +
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 232 H-RWSHVGDKPF 242
H R H P
Sbjct: 64 HLRKQHSYSGPS 75
Score = 95.3 bits (238), Expect = 2e-25
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 34/105 (32%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVH 84
RTH+GE+P++C +C RF+Q +++H
Sbjct: 3 SGSSGRTHSGEKPYECYICHARFTQSG----------------------------TMKMH 34
Query: 85 MRTHTGE--RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
+ E + C C+ ++KS L H R H+ P
Sbjct: 35 ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQ----HSYSGPS 75
Score = 92.6 bits (231), Expect = 2e-24
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 37/109 (33%)
Query: 80 NLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTED-KPYHCTGCDAAFSR 138
+ RTH+GE+PY+C +C+ RF+Q ++ H HTE+ +HC CD +R
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQK----HTENVAKFHCPHCDTVIAR 57
Query: 139 KQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRT-HTGERPF 186
K L VH+R H+ P
Sbjct: 58 KSDL-------------------------------GVHLRKQHSYSGPS 75
Score = 79.1 bits (196), Expect = 3e-19
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 39/111 (35%)
Query: 108 SLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFL 167
S + R H + +KPY C C A F++ +
Sbjct: 2 SSGSSGRTH-----SGEKPYECYICHARFTQSGTM------------------------- 31
Query: 168 TSLFSHQVHMRTHTGE--RPFQCAVCSKRFTQKSSLNTH-KRVHTGERPYA 215
++H+ E F C C +KS L H ++ H+ P +
Sbjct: 32 ------KMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
Score = 76.8 bits (190), Expect = 2e-18
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 200 SLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVG--DKPFGCTSCHLTFTSKSQF 257
S + R H+GE+PY C IC RF + H F C C KS
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 258 AVHLRTHHT 266
VHLR H+
Sbjct: 62 GVHLRKQHS 70
Score = 76.8 bits (190), Expect = 2e-18
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 29/96 (30%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGE--RPFQCVVCLKRFSQKSALNTHKR 58
+ HSG KPY C C A F + +++H+ E F C C ++KS L H R
Sbjct: 7 GRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Query: 59 MHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPY 94
+ H+ P
Sbjct: 67 ---------------------------KQHSYSGPS 75
Score = 25.2 bits (56), Expect = 9.5
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 260 HLRTH---HTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ H+ + C +C F + + H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 96.0 bits (240), Expect = 1e-25
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 28/107 (26%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCD 69
+ C C SF R L H+ H+ RP+ C C KRF QKS
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKS------------------ 43
Query: 70 ACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+++ H HTGE+P++C+VC K FSQ S+L TH R H
Sbjct: 44 ----------DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 92.9 bits (232), Expect = 2e-24
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 36/117 (30%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVM 153
+ C++C K F + S+L+TH IH ++ +PY C C F +K +
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIH-----SDTRPYPCQYCGKRFHQKSDM----------- 45
Query: 154 QPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
+ H HTGE+P +C VC K F+Q S+L TH R HTG
Sbjct: 46 --------------------KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 85.9 bits (214), Expect = 9e-22
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
F C +C K F + S+L+TH +H+ RPY C C KRF KS + H + H G+KP C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 246 SCHLTFTSKSQFAVHLRTH 264
C F+ S H R H
Sbjct: 62 VCGKAFSQSSNLITHSRKH 80
Score = 84.4 bits (210), Expect = 3e-21
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
+ C C +F L H+ H+ RPY C+ C KRF QKS + H IH T +K
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIH-----TGEK 56
Query: 126 PYHCTGCDAAFSRKQYL 142
P+ C C AFS+ L
Sbjct: 57 PHKCQVCGKAFSQSSNL 73
Score = 84.0 bits (209), Expect = 5e-21
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRW 234
H+ H+ RP+ C C KRF QKS + H +HTGE+P+ C +C K F+ S + +H
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Query: 235 SHVG 238
H G
Sbjct: 79 KHTG 82
Score = 75.2 bits (186), Expect = 1e-17
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
HS +PY C C F +K ++ H HTGE+P +C VC K FSQ S L TH R H
Sbjct: 24 HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 38.9 bits (92), Expect = 1e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTG 34
+H+G KP+ C C +F + L H R HTG
Sbjct: 49 TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 95.7 bits (239), Expect = 3e-25
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 30/115 (26%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHI 61
+ C ++ + +L+ H+RTHTGE+P+ C C +F++ L H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH----- 56
Query: 62 PYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
R HTG RP+QC+ C++ FS+ L H + H
Sbjct: 57 -----------------------YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 89.1 bits (222), Expect = 7e-23
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 180 HTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHV 237
T A C K +T+ S L H R HTGE+PY CD C +FA +T H H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G +PF C C F+ A+H++ H
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 85.7 bits (213), Expect = 2e-21
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 33/118 (27%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
T GC +++ +L + H+RTH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHL-------------------------------KAHLRTH 30
Query: 181 TGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSH 236
TGE+P+ C C +F + L H R HTG RP+ C CD+ F+ ++ H H
Sbjct: 31 TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 78.0 bits (193), Expect = 1e-18
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 56 HKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHK 113
H C T+T +L+ H+RTHTGE+PY C + C +F++ L H
Sbjct: 2 RTATHT----CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 114 RIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
R H T +P+ C CD AFSR +L
Sbjct: 58 RKH-----TGHRPFQCQKCDRAFSRSDHL 81
Score = 71.4 bits (176), Expect = 3e-16
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKR 58
++ H+G KPYHC C F R L H R HTG RPFQC C + FS+ L H +
Sbjct: 27 LRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Query: 59 MH 60
H
Sbjct: 87 RH 88
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 93.7 bits (234), Expect = 1e-24
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH----IPYIQYYCDACDATFTTKQN 80
RTHTGE+P+ C C K F QK L+ H + + + C C TFT +
Sbjct: 3 SGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNT 62
Query: 81 LEVHMRTHTGERPYQCEVCNKRF 103
+ H G + E
Sbjct: 63 MARHADNCAGPDGVEGENSGPSS 85
Score = 93.4 bits (233), Expect = 1e-24
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 32/116 (27%)
Query: 80 NLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRK 139
+ RTHTGE+PY C C+K F QK L+ H + + + + + C+ C F+R+
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD-PNFVPAAFVCSKCGKTFTRR 60
Query: 140 QYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRF 195
+ H G +
Sbjct: 61 NTM-------------------------------ARHADNCAGPDGVEGENSGPSS 85
Score = 90.3 bits (225), Expect = 3e-23
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGE----RPYACDICDKRFAVKSYV 229
RTHTGE+P+ C+ C K F QK L+ H + + + C C K F ++ +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 230 TSHRWSHVGDKPFGCTSC 247
H + G +
Sbjct: 64 ARHADNCAGPDGVEGENS 81
Score = 87.6 bits (218), Expect = 2e-22
Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 40/120 (33%)
Query: 108 SLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFL 167
S + R H T +KPY C+ CD F +KQ L
Sbjct: 2 SSGSSGRTH-----TGEKPYACSHCDKTFRQKQLL------------------------- 31
Query: 168 TSLFSHQVHMRTHTGE----RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRF 223
+H + + F C+ C K FT+++++ H G +
Sbjct: 32 ------DMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 74.9 bits (185), Expect = 2e-17
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 200 SLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVG----DKPFGCTSCHLTFTSKS 255
S + R HTGE+PYAC CDK F K + H + F C+ C TFT ++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 256 QFAVHLRTHHTVGANHVCNVCGRSF 280
A H G S
Sbjct: 62 TMARHADN-CAGPDGVEGENSGPSS 85
Score = 54.1 bits (131), Expect = 5e-10
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRF 47
+ + C+ C +F R+ + H G +
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 92.5 bits (231), Expect = 3e-24
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 170 LFSH-QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSY 228
+ H H ++P++C C F K +L +HK VHTGE+PY C+IC +F +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPAN 60
Query: 229 VTSHRWSHVGDKPF 242
+ +H H G+KP+
Sbjct: 61 LKTHTRIHSGEKPY 74
Score = 88.7 bits (221), Expect = 6e-23
Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 33/104 (31%)
Query: 24 YLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEV 83
+ H ++P++C C F K NL
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKG----------------------------NLAS 35
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
H HTGE+PY+C +C +F++ ++L TH RI H+ +KPY
Sbjct: 36 HKTVHTGEKPYRCNICGAQFNRPANLKTHTRI-----HSGEKPY 74
Score = 84.4 bits (210), Expect = 3e-21
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 36/107 (33%)
Query: 80 NLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRK 139
+ H ++PY+C+ C F K +L +HK +H T +KPY C C A F+R
Sbjct: 4 HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVH-----TGEKPYRCNICGAQFNRP 58
Query: 140 QYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPF 186
L + H R H+GE+P+
Sbjct: 59 ANL-------------------------------KTHTRIHSGEKPY 74
Score = 75.2 bits (186), Expect = 8e-18
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ +KPY C C ASF K L H HTGE+P++C +C +F++ + L TH R+H
Sbjct: 9 SHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 73.3 bits (181), Expect = 5e-17
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 199 SSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFA 258
+ H + ++PY CD C F K + SH+ H G+KP+ C C F +
Sbjct: 3 HHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62
Query: 259 VHLRTH 264
H R H
Sbjct: 63 THTRIH 68
Score = 49.4 bits (119), Expect = 2e-08
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 225 VKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDS 284
+ + H DKP+ C C +F K A H HT + CN+CG F R +
Sbjct: 1 MGHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTV-HTGEKPYRCNICGAQFNRPA 59
Query: 285 YLIRHQ 290
L H
Sbjct: 60 NLKTHT 65
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 91.0 bits (227), Expect = 9e-24
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHV 237
+ + P +C+ CS + K++L H+R+H +RP+ C+ C S ++ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Query: 238 GDKPFGCT 245
GD +
Sbjct: 62 GDMSGPSS 69
Score = 88.3 bits (220), Expect = 9e-23
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 33/102 (32%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
+ + P +C C S K+AL +H R H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALR----------------------------IHERIHC 33
Query: 90 GERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+RP++C C+ Q S+L+ H + D +G
Sbjct: 34 TDRPFKCNYCSFDTKQPSNLSKHMKK-----FHGDMSGPSSG 70
Score = 80.6 bits (200), Expect = 6e-20
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
S P C+ C S K L IH R H +RPF+C C Q S L+ H +
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 77.5 bits (192), Expect = 8e-19
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 36/104 (34%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVN 145
+ + P +C C+ S K++L H+RI H D+P+ C C + L
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERI-----HCTDRPFKCNYCSFDTKQPSNL--- 53
Query: 146 HTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCA 189
HM+ G+ +
Sbjct: 54 ----------------------------SKHMKKFHGDMSGPSS 69
Score = 77.2 bits (191), Expect = 1e-18
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 31/96 (32%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ P C+ C + S K L ++H R H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAAL-------------------------------RIHERIH 32
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+RPF+C CS Q S+L+ H + G+
Sbjct: 33 CTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 69.1 bits (170), Expect = 2e-15
Identities = 14/60 (23%), Positives = 22/60 (36%)
Query: 206 RVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHH 265
+ P C C + K+ + H H D+PF C C S + H++ H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
Score = 51.0 bits (123), Expect = 6e-09
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
++H ++P+ C C + L HM+ G+
Sbjct: 29 ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
Score = 25.9 bits (58), Expect = 3.9
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ C S + L H+
Sbjct: 12 CSECSYSCSSKAALRIHE 29
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 90.0 bits (224), Expect = 4e-23
Identities = 37/139 (26%), Positives = 51/139 (36%), Gaps = 42/139 (30%)
Query: 73 ATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT-- 130
+ + R H + P C K +++ S L H R H T +KPY CT
Sbjct: 1 GSSGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTH-----TGEKPYKCTWE 51
Query: 131 GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAV 190
GCD F+R L H R HTG +PFQC V
Sbjct: 52 GCDWRFARSDEL-------------------------------TRHYRKHTGAKPFQCGV 80
Query: 191 CSKRFTQKSSLNTHKRVHT 209
C++ F++ L H + H
Sbjct: 81 CNRSFSRSDHLALHMKRHQ 99
Score = 88.5 bits (220), Expect = 2e-22
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 34/120 (28%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKR 58
++H + P C + + +L+ H+RTHTGE+P++C C RF++
Sbjct: 13 RRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD------- 61
Query: 59 MHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHIN 118
L H R HTG +P+QC VCN+ FS+ L H + H N
Sbjct: 62 ---------------------ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 84.6 bits (210), Expect = 5e-21
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHR 233
R H + P C+K +T+ S L H R HTGE+PY C CD RFA +T H
Sbjct: 12 KRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHY 67
Query: 234 WSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
H G KPF C C+ +F+ A+H++ H
Sbjct: 68 RKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 83.4 bits (207), Expect = 1e-20
Identities = 30/136 (22%), Positives = 49/136 (36%), Gaps = 42/136 (30%)
Query: 103 FSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTW 162
+RIH GC +++ +L
Sbjct: 3 SGSSGPDLEKRRIHYC---------DYPGCTKVYTKSSHL-------------------- 33
Query: 163 SAKFLTSLFSHQVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICD 220
+ H+RTHTGE+P++C C RF + L H R HTG +P+ C +C+
Sbjct: 34 -----------KAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 221 KRFAVKSYVTSHRWSH 236
+ F+ ++ H H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 82.7 bits (205), Expect = 3e-20
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 47 FSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFS 104
+R+H C +T +L+ H+RTHTGE+PY+C E C+ RF+
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 105 QKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
+ L H R H T KP+ C C+ +FSR +L
Sbjct: 59 RSDELTRHYRKH-----TGAKPFQCGVCNRSFSRSDHL 91
Score = 65.0 bits (159), Expect = 9e-14
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Query: 195 FTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT--SCHLTFT 252
+R+H + P C K + S++ +H +H G+KP+ CT C F
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFA 58
Query: 253 SKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ H R HT C VC RSF R +L H
Sbjct: 59 RSDELTRHYRK-HTGAKPFQCGVCNRSFSRSDHLALHM 95
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 89.1 bits (222), Expect = 4e-23
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
H+GE+P+ C C K F++ S L H+RVHTGE+PY C C K F+ S + +H+
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRI 64
Query: 236 HVGDKPFG 243
H G
Sbjct: 65 HTSGPSSG 72
Score = 82.9 bits (206), Expect = 8e-21
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 33/103 (32%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVH 84
H+GE+P+ CV C K FS+ S L H+R
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-------------------------- 35
Query: 85 MRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
HTGE+PY+C C K FSQ S L H+RI HT
Sbjct: 36 --VHTGEKPYKCLECGKAFSQNSGLINHQRI-----HTSGPSS 71
Score = 79.8 bits (198), Expect = 1e-19
Identities = 31/107 (28%), Positives = 41/107 (38%), Gaps = 36/107 (33%)
Query: 109 LNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLT 168
+ IH + +KPY C C AFSR +
Sbjct: 2 SSGSSGIH-----SGEKPYGCVECGKAFSRS----------------------------S 28
Query: 169 SLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
L HQ R HTGE+P++C C K F+Q S L H+R+HT
Sbjct: 29 ILVQHQ---RVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 72.9 bits (180), Expect = 5e-17
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+HSG KPY C C +F R L H R HTGE+P++C+ C K FSQ S L H+R+H
Sbjct: 7 GIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 69.0 bits (170), Expect = 2e-15
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 201 LNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVH 260
+ +H+GE+PY C C K F+ S + H+ H G+KP+ C C F+ S H
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Query: 261 LRTH 264
R H
Sbjct: 62 QRIH 65
Score = 29.7 bits (68), Expect = 0.19
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG++F R S L++HQ
Sbjct: 17 CVECGKAFSRSSILVQHQ 34
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 87.9 bits (219), Expect = 1e-22
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
R ++C C K F+ S L+ H+R HTGE+PY CD C K F +S++ H
Sbjct: 9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRV 68
Query: 236 HVGDKPF 242
H G P
Sbjct: 69 HTGSGPS 75
Score = 86.3 bits (215), Expect = 5e-22
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 33/103 (32%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVH 84
R ++C C K FS S L+ H+R
Sbjct: 6 SGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-------------------------- 39
Query: 85 MRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
THTGE+PY+C+ C K F Q+S L H R+ HT P
Sbjct: 40 --THTGEKPYKCDECGKAFIQRSHLIGHHRV-----HTGSGPS 75
Score = 85.2 bits (212), Expect = 1e-21
Identities = 30/110 (27%), Positives = 37/110 (33%), Gaps = 36/110 (32%)
Query: 105 QKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSA 164
S + E + Y C C +FS L
Sbjct: 2 SSGSSGRSEWQQ-----RERRRYKCDECGKSFSHSSDL---------------------- 34
Query: 165 KFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPY 214
H RTHTGE+P++C C K F Q+S L H RVHTG P
Sbjct: 35 ---------SKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 80.6 bits (200), Expect = 1e-19
Identities = 27/107 (25%), Positives = 36/107 (33%), Gaps = 36/107 (33%)
Query: 80 NLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRK 139
+ R Y+C+ C K FS S L+ H+R H T +KPY C C AF ++
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH-----TGEKPYKCDECGKAFIQR 59
Query: 140 QYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPF 186
+ L H R HTG P
Sbjct: 60 ----------------------------SHLIGHH---RVHTGSGPS 75
Score = 73.6 bits (182), Expect = 3e-17
Identities = 22/68 (32%), Positives = 30/68 (44%)
Query: 197 QKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQ 256
S + R Y CD C K F+ S ++ HR +H G+KP+ C C F +S
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSH 61
Query: 257 FAVHLRTH 264
H R H
Sbjct: 62 LIGHHRVH 69
Score = 71.3 bits (176), Expect = 2e-16
Identities = 24/59 (40%), Positives = 30/59 (50%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ Y C C SF L H RTHTGE+P++C C K F Q+S L H R+H
Sbjct: 11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 85.5 bits (212), Expect = 1e-21
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 180 HTGERPFQCAVCSKRFTQKSSLNTHKRVHT---GERPYACDICDKRFAVKSYVTSHRWSH 236
+G QC +C QK+SLN H+R H + C+ C KRF V +HR
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 237 VGDKPFGCTSC 247
Sbjct: 62 HPALLLAPQES 72
Score = 83.2 bits (206), Expect = 1e-20
Identities = 19/104 (18%), Positives = 27/104 (25%), Gaps = 35/104 (33%)
Query: 32 HTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT-- 89
+G QC +C QK+ +L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKA----------------------------SLNWHQRKHAET 33
Query: 90 -GERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGC 132
+ CE C KRF + S+ H+ H
Sbjct: 34 VAALRFPCEFCGKRFEKPDSVAAHRSKS----HPALLLAPQESS 73
Score = 77.1 bits (190), Expect = 2e-18
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHT---GERPFQCVVCLKRFSQKSALNTHKRMH 60
SG+ C C + +K L H R H F C C KRF + ++ H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 61 IPYIQYYCDAC 71
P +
Sbjct: 62 HPALLLAPQES 72
Score = 72.1 bits (177), Expect = 2e-16
Identities = 18/106 (16%), Positives = 25/106 (23%), Gaps = 33/106 (31%)
Query: 88 HTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHT 147
+G QCE+C QK+SLN H+R H + C C F + +
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAE--TVAALRFPCEFCGKRFEKPDSV----- 54
Query: 148 TVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSK 193
H S
Sbjct: 55 --------------------------AAHRSKSHPALLLAPQESSG 74
Score = 66.7 bits (163), Expect = 1e-14
Identities = 16/99 (16%), Positives = 21/99 (21%), Gaps = 34/99 (34%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ C C +K L H R H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASL-------------------------------NWHQRKH 30
Query: 181 T---GERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
F C C KRF + S+ H+ A
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP 69
Score = 45.9 bits (109), Expect = 4e-07
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 236 HVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGAN--HVCNVCGRSFVRDSYLIRHQNK 292
G C C T K+ H R H A C CG+ F + + H++K
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 84.5 bits (210), Expect = 3e-21
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 36/109 (33%)
Query: 32 HTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
+G C C + FS + LN HK+ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKY---------------------------QHI 34
Query: 90 GERPYQCE--VCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAF 136
++ + C C K F+ K L H ++ H++ + Y C +
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEHMKL-----HSDTRDYICEFSGPSS 78
Score = 84.1 bits (209), Expect = 4e-21
Identities = 22/108 (20%), Positives = 31/108 (28%), Gaps = 36/108 (33%)
Query: 121 HTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMR 178
+ C GC FS +QYL H +
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYL-------------------------------NHHKK 30
Query: 179 -THTGERPFQC--AVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRF 223
H ++ F C C K F K L H ++H+ R Y C+
Sbjct: 31 YQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 83.8 bits (208), Expect = 5e-21
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 180 HTGERPFQCAV--CSKRFTQKSSLNTHKRV-HTGERPYACD--ICDKRFAVKSYVTSHRW 234
+G C C + F+ + LN HK+ H ++ ++C C K F K ++ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 235 SHVGDKPFGCTSC 247
H + + C
Sbjct: 62 LHSDTRDYICEFS 74
Score = 83.4 bits (207), Expect = 8e-21
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 39/112 (34%)
Query: 88 HTGERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLE 143
+G C+ C + FS + LN HK+ H K + C C +F+ K++L
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ----HIHQKSFSCPEPACGKSFNFKKHL- 56
Query: 144 VNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRF 195
+ HM+ H+ R + C
Sbjct: 57 ------------------------------KEHMKLHSDTRDYICEFSGPSS 78
Score = 83.0 bits (206), Expect = 1e-20
Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 33/105 (31%)
Query: 4 HSGNKPYHCTA--CDASFCRKPYLEIHMR-THTGERPFQC--VVCLKRFSQKSALNTHKR 58
SG+ C C F + YL H + H ++ F C C K F+ K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKK------- 54
Query: 59 MHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRF 103
+L+ HM+ H+ R Y CE
Sbjct: 55 ---------------------HLKEHMKLHSDTRDYICEFSGPSS 78
Score = 51.8 bits (125), Expect = 3e-09
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 30/86 (34%)
Query: 208 HTGERPYACDI--CDKRFAVKSYVTSH-RWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
+G CD C + F+ + Y+ H ++ H+ K F C
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA---------------- 45
Query: 265 HTVGANHVCNVCGRSFVRDSYLIRHQ 290
CG+SF +L H
Sbjct: 46 -----------CGKSFNFKKHLKEHM 60
Score = 27.1 bits (61), Expect = 2.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 1 MKLHSGNKPYHCTACDASF 19
MKLHS + Y C S
Sbjct: 60 MKLHSDTRDYICEFSGPSS 78
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 82.6 bits (205), Expect = 9e-21
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 26/87 (29%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
T GE ++C VC + ++ S H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTS--------------------------HKR 36
Query: 90 GERPYQCEVCNKRFSQKSSLNTHKRIH 116
+ Y C C K F++K ++ H +I
Sbjct: 37 NVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 78.7 bits (195), Expect = 3e-19
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRV--HTGERPYACDICDKRFAVKSYVTSHRWS 235
T GE ++C VCS+ +T S+ H + Y C C K F K +T+H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Query: 236 H 236
Sbjct: 63 I 63
Score = 76.4 bits (189), Expect = 2e-18
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
T GE Y+C+VC++ ++ S+ H K Y C C F+RK +
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSH---KRNVKVYPCPFCFKEFTRKDNM 56
Score = 70.3 bits (173), Expect = 4e-16
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRT--HTGERPFQCVVCLKRFSQKSALNTHKRMH 60
G Y C C + H T + + C C K F++K + H ++
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKII 63
Score = 65.7 bits (161), Expect = 2e-14
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 205 KRVHTGERPYACDICDKRFAVKSYVTSHR--WSHVGDKPFGCTSCHLTFTSKSQFAVHLR 262
+ GE Y C +C + + S H K + C C FT K H++
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVK 61
Query: 263 THHTV 267
H +
Sbjct: 62 IIHKI 66
Score = 61.8 bits (151), Expect = 5e-13
Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 33/92 (35%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRT- 179
+ Y C C ++ H T
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNF-------------------------------CRHYVTS 33
Query: 180 -HTGERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
+ + C C K FT+K ++ H ++
Sbjct: 34 HKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 51.0 bits (123), Expect = 5e-09
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 236 HVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGAN-HVCNVCGRSFVRDSYLIRHQ 290
G+ + C C +T S F H T H + C C + F R + H
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 40.6 bits (96), Expect = 2e-05
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTG 34
K Y C C F RK + H++
Sbjct: 35 KRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 71.8 bits (177), Expect = 6e-17
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+ GE+P+ C +C RF +L +H R+HTG P +
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 65.2 bits (160), Expect = 2e-14
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
+ GE+PY CE+C RF +L +H RI HT P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRI-----HTGSGPS 40
Score = 57.5 bits (140), Expect = 1e-11
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 28/67 (41%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE+P+ C +C RF L+ H+R
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQ----------------------------TLKSHLRI 33
Query: 88 HTGERPY 94
HTG P
Sbjct: 34 HTGSGPS 40
Score = 51.3 bits (124), Expect = 2e-09
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPF 38
G KPY C C F L+ H+R HTG P
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 49.4 bits (119), Expect = 9e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
GE+PY C+IC RF + SH H G P
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 31/66 (46%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+KPY C C F Q L + H+R H
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTL-------------------------------KSHLRIH 34
Query: 181 TGERPF 186
TG P
Sbjct: 35 TGSGPS 40
Score = 33.6 bits (78), Expect = 0.004
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S G+KP+ C C F HLR H
Sbjct: 1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 24.0 bits (53), Expect = 9.6
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C +CG F L H
Sbjct: 14 CEICGTRFRHLQTLKSHL 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 71.8 bits (177), Expect = 7e-17
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD 217
+ TGE+PF+C +C K F +S LN H VHT E+P
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 66.4 bits (163), Expect = 8e-15
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+ TGE+P++C++C K F +S LN H + HT +KP +
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMV-----HTAEKPSGPSS 45
Score = 57.9 bits (141), Expect = 1e-11
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ CDIC K F +S + H H +KP G +S
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PF+C +C K F +S LN H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHS----------------------------MV 34
Query: 88 HTGERPYQCE 97
HT E+P
Sbjct: 35 HTAEKPSGPS 44
Score = 51.3 bits (124), Expect = 2e-09
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C SFC + L H HT E+P
Sbjct: 5 SSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C C +F + L
Sbjct: 2 SSGSSG-----TGEKPFKCDICGKSFCGRSRL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HT E+P
Sbjct: 29 ---NRHSMVHTAEKPSGP 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C +F +S+ H H
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 31.7 bits (73), Expect = 0.019
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C++CG+SF S L RH
Sbjct: 1 GSSGSSG-TGEKPFKCDICGKSFCGRSRLNRHS 32
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 71.4 bits (176), Expect = 1e-16
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+ GE+P++C C RF Q + L H +HTG P +
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 64.5 bits (158), Expect = 3e-14
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
+ GE+PY+CE C RF Q + L H I HT P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLI-----HTGSGPS 40
Score = 55.6 bits (135), Expect = 6e-11
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 28/67 (41%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE+P++C C RF Q + +L H+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVA----------------------------HLRAHVLI 33
Query: 88 HTGERPY 94
HTG P
Sbjct: 34 HTGSGPS 40
Score = 49.1 bits (118), Expect = 1e-08
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPF 38
G KPY C C A F + +L H+ HTG P
Sbjct: 3 SGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 48.3 bits (116), Expect = 3e-08
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
GE+PY C+ C RF +++ +H H G P
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 34.8 bits (81), Expect = 0.001
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 31/66 (46%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+KPY C C A F + +L + H+ H
Sbjct: 6 SGGEKPYKCETCGARFVQVAHL-------------------------------RAHVLIH 34
Query: 181 TGERPF 186
TG P
Sbjct: 35 TGSGPS 40
Score = 33.7 bits (78), Expect = 0.004
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 232 HRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S G+KP+ C +C F + H+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 27.1 bits (61), Expect = 0.79
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG FV+ ++L H
Sbjct: 14 CETCGARFVQVAHLRAHV 31
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 71.9 bits (177), Expect = 2e-16
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDK 125
+ C F L+VH +HT + PY+C E C+KRFS S L H+++ H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-----HAGYP 60
Query: 126 PYHCTGCDAAFSRKQYLEVNH 146
C +
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHV 81
Score = 70.0 bits (172), Expect = 8e-16
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 174 QVHMRTHTGERPFQC--AVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
+VH +HT + P++C C KRF+ S L H++VH G D C +
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLK 79
Query: 232 HR 233
H
Sbjct: 80 HV 81
Score = 68.8 bits (169), Expect = 2e-15
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 191 CSKRFTQKSSLNTHKRVHTGERPYACD--ICDKRFAVKSYVTSHRWSHVGDKPFGCTSCH 248
C K F + + L H+ HT + PY C CDKRF++ S + H H G SC
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCS 68
Query: 249 LTFTSKSQFAVHLRTHH 265
+ + + H+ H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 68.4 bits (168), Expect = 4e-15
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 33/112 (29%)
Query: 10 YHCTA--CDASFCRKPYLEIHMRTHTGERPFQC--VVCLKRFSQKSALNTHKRMHIPYIQ 65
Y C C +F + L++H +HT + P++C C KRFS S
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPS-------------- 47
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH-KRIH 116
L+ H + H G + + C+ + H H
Sbjct: 48 --------------RLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 61.5 bits (150), Expect = 1e-12
Identities = 24/116 (20%), Positives = 32/116 (27%), Gaps = 39/116 (33%)
Query: 96 CEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVM 153
E C K F + + L H+ H T+ PY C GCD FS L
Sbjct: 6 FENCGKAFKKHNQLKVHQFSH-----TQQLPYECPHEGCDKRFSLPSRL----------- 49
Query: 154 QPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTH-KRVH 208
+ H + H G + CS + H H
Sbjct: 50 --------------------KRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 53.4 bits (129), Expect = 1e-09
Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 4 HSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKR 58
H+ PY C CD F L+ H + H G + C + H
Sbjct: 26 HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 29.9 bits (68), Expect = 0.23
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 244 CTSCHLTFTSKSQFAVHLRTHHTVGANHVCNV--CGRSFVRDSYLIRHQ 290
+C F +Q VH +H T + C C + F S L RH+
Sbjct: 6 FENCGKAFKKHNQLKVHQFSH-TQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 27.6 bits (62), Expect = 1.2
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 1 MKLHSGNKPYHCTACDASFCRK-PYLEIHMRTH 32
K+H+G +C YL+ H
Sbjct: 53 EKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 2e-16
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C+ C K FT+KS L+ H++ HTGER
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 64.5 bits (158), Expect = 4e-14
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+ TGE+PY+C C K F++KS L+ H++ HT ++ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQS-----HTGERHSGPSS 45
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F KS + H+ SH G++ G +S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS 45
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F++KS L +H ++
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKS----------------------------GLHIHQQS 34
Query: 88 HTGERPYQC 96
HTGER
Sbjct: 35 HTGERHSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C +F RK L IH ++HTGER
Sbjct: 5 SSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C+ C AF+RK L
Sbjct: 2 SSGSSG-----TGEKPYKCSDCGKAFTRKSGL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H ++HTGER
Sbjct: 29 ---HIHQQSHTGERHSGP 43
Score = 28.2 bits (64), Expect = 0.32
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+ CG++F R S L HQ
Sbjct: 1 GSSGSSG-TGEKPYKCSDCGKAFTRKSGLHIHQ 32
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.6 bits (174), Expect = 2e-16
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ GE+ ++C VC K F+Q S L TH+RVHTGE+P
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 66.4 bits (163), Expect = 8e-15
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ GE+ Y+C+VC K FSQ S L TH+R+ HT +KP +
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRV-----HTGEKPSGPS 44
Score = 57.2 bits (139), Expect = 2e-11
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ GE+ Y CD+C K F+ S++ +H+ H G+KP G +S
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45
Score = 55.2 bits (134), Expect = 1e-10
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ GE+ ++C VC K FSQ S L TH+ R
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ----------------------------R 33
Query: 87 THTGERPYQC 96
HTGE+P
Sbjct: 34 VHTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
G K Y C C F + +L+ H R HTGE+P
Sbjct: 5 SSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ +K Y C C FS+ +L
Sbjct: 2 SSGSSG-----MGEKCYKCDVCGKEFSQSSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
Q H R HTGE+P
Sbjct: 29 ---QTHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S +G+K + C C F+ S H R H
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 31.0 bits (71), Expect = 0.033
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + C+VCG+ F + S+L HQ
Sbjct: 1 GSSGSSG-MGEKCYKCDVCGKEFSQSSHLQTHQ 32
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 70.2 bits (173), Expect = 3e-16
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F KS+L H+R HTGE +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 64.4 bits (158), Expect = 4e-14
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TGE+PY+C C K F+ KS+L H+R HT +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRT-----HTGESGPSS 43
Score = 57.5 bits (140), Expect = 1e-11
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TGE+P++C C K F+ KS NL VH R
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKS----------------------------NLMVHQR 33
Query: 87 THTGERPYQC 96
THTGE
Sbjct: 34 THTGESGPSS 43
Score = 53.6 bits (130), Expect = 3e-10
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
+ TGE+PY C+ C K F KS + H+ +H G+
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F K L +H RTHTGE
Sbjct: 5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 41.7 bits (99), Expect = 6e-06
Identities = 18/78 (23%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF+ K L
Sbjct: 2 SSGSSG-----TGEKPYECNECQKAFNTKSNL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH RTHTGE
Sbjct: 29 ---MVHQRTHTGESGPSS 43
Score = 30.1 bits (69), Expect = 0.060
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + CN C ++F S L+ HQ
Sbjct: 1 GSSGSSG-TGEKPYECNECQKAFNTKSNLMVHQ 32
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 70.2 bits (173), Expect = 3e-16
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE PF C+ C K FT K++L H+++HTGERP
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 62.1 bits (152), Expect = 2e-13
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE P+ C C K F+ K++L H++I HT ++P +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKI-----HTGERPSGPS 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE P+ C C K F K+ + H+ H G++P G +S
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS 45
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE PF C C K F+ K+ NL +H +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKT----------------------------NLIIHQKI 34
Query: 88 HTGERPYQC 96
HTGERP
Sbjct: 35 HTGERPSGP 43
Score = 51.7 bits (125), Expect = 2e-09
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G P+ C+ C F K L IH + HTGERP
Sbjct: 5 SSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T + P+ C+ C F+ K T+L
Sbjct: 2 SSGSSG-----TGENPFICSECGKVFTHK----------------------------TNL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ + HTGERP
Sbjct: 29 IIHQ---KIHTGERPSGP 43
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+ PF C+ C FT K+ +H + H
Sbjct: 2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 29.0 bits (66), Expect = 0.21
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T +C+ CG+ F + LI HQ
Sbjct: 3 SGSSG-TGENPFICSECGKVFTHKTNLIIHQ 32
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 70.3 bits (173), Expect = 3e-16
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTH-KRVHTGERPYACDICDKRFA 224
+ + +P+ C C K F++ LN H K+VHT ERP+ C + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 63.8 bits (156), Expect = 9e-14
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFS 137
+ + +PY C+ C K FS+ LN H + +HT ++P+ C + S
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQ----VHTSERPHKCQVWVSGPS 52
Score = 62.2 bits (152), Expect = 3e-13
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 27/78 (34%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ + +P+ C C K FS+ LN H + +
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIK---------------------------QV 35
Query: 88 HTGERPYQCEVCNKRFSQ 105
HT ERP++C+V S
Sbjct: 36 HTSERPHKCQVWVSGPSS 53
Score = 56.8 bits (138), Expect = 2e-11
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHM-RTHTGERPFQCVVCLKRFSQ 49
S KPY C +C F R +L H+ + HT ERP +C V + S
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 49.5 bits (119), Expect = 1e-08
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSH-RWSHVGDKPFGCTSCHLTFTS 253
+ + +PY C C K F+ ++ H + H ++P C +S
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 44.5 bits (106), Expect = 6e-07
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 32/78 (41%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHM-RT 179
+ KPY C C FSR +L H+ +
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHL-------------------------------NGHIKQV 35
Query: 180 HTGERPFQCAVCSKRFTQ 197
HT ERP +C V +
Sbjct: 36 HTSERPHKCQVWVSGPSS 53
Score = 38.3 bits (90), Expect = 9e-05
Identities = 14/50 (28%), Positives = 18/50 (36%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSF 280
S S KP+ C SC F+ H++ HT H C V
Sbjct: 2 SSGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 26.8 bits (60), Expect = 1.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 265 HTVGANHVCNVCGRSFVRDSYLIRH 289
+VG ++C CG+ F R +L H
Sbjct: 7 GSVGKPYICQSCGKGFSRPDHLNGH 31
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 3e-16
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K + K +L+ H++VHTGERP
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+CE C K ++ K +L+ H+++ HT ++P +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKV-----HTGERPSGPS 44
Score = 55.2 bits (134), Expect = 8e-11
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 28/70 (40%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TGE+P++C C K ++ K NL++H +
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKF----------------------------NLDMHQK 33
Query: 87 THTGERPYQC 96
HTGERP
Sbjct: 34 VHTGERPSGP 43
Score = 54.5 bits (132), Expect = 1e-10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K + K + H+ H G++P G +S
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C + K L++H + HTGERP
Sbjct: 5 SSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C ++ K +L
Sbjct: 2 SSGSSG-----TGEKPYKCEKCGKGYNSK----------------------------FNL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ + HTGERP
Sbjct: 29 DMHQ---KVHTGERPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C + SK +H + H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 27.5 bits (62), Expect = 0.66
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG+ + L HQ
Sbjct: 1 GSSGSSG-TGEKPYKCEKCGKGYNSKFNLDMHQ 32
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 69.9 bits (172), Expect = 4e-16
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ GER +C+ C K F Q S+ H+R+HTGE+P
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 61.8 bits (151), Expect = 4e-13
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ GER ++C C K F Q S+ H+RI HT +KP +
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRI-----HTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 3e-11
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ GER + C C K F S HR H G+KP G +S
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/69 (24%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GER +C C K F Q S N H R
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQAS----------------------------NFIQHRRI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 47.9 bits (115), Expect = 4e-08
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
G + + C+ C F + H R HTGE+P
Sbjct: 5 SSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++ C+ C F S F H R H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ ++ + C+ C F + ++
Sbjct: 2 SSGSSG-----HGERGHRCSDCGKFFLQA----------------------------SNF 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H+ R HTGE+P
Sbjct: 29 IQHR---RIHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.098
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ CG+ F++ S I+H+
Sbjct: 15 CSDCGKFFLQASNFIQHR 32
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 4e-16
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+PF+C C KRFTQ S L++H+RVHTGE+P
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 64.1 bits (157), Expect = 5e-14
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+P++CE C KRF+Q S L++H+R+ HT +KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRV-----HTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+P+ C+ C KRF S + SH+ H G+KP G +S
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 5e-10
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+PF+C C KRF+Q S L++H+ R
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQ----------------------------RV 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KP+ C C F + L H R HTGE+P
Sbjct: 5 SSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KP+ C C F++ + L
Sbjct: 2 SSGSSG-----SGEKPFKCEECGKRFTQN----------------------------SQL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
SHQ R HTGE+P
Sbjct: 29 HSHQ---RVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C FT SQ H R H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.31
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG+ F ++S L HQ
Sbjct: 15 CEECGKRFTQNSQLHSHQ 32
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 69.9 bits (172), Expect = 4e-16
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG+RP++C C K F KSSL H+R HTGE+P
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 64.1 bits (157), Expect = 6e-14
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TG+RPY+C C K F KSSL H+R HT +KP +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRS-----HTGEKPSGPS 44
Score = 54.9 bits (133), Expect = 1e-10
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG+RP++C+ C K F KS +L H R+
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKS----------------------------SLICHRRS 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 54.9 bits (133), Expect = 1e-10
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
+ TG+RPY C C K F KS + HR SH G+KP G +
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 1e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G +PY C C +F K L H R+HTGE+P
Sbjct: 5 SSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +PY C C AF K L
Sbjct: 2 SSGSSG-----TGQRPYECIECGKAFKTKSSL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R+HTGE+P
Sbjct: 29 ---ICHRRSHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 9e-04
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G +P+ C C F +KS H R+H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 29.4 bits (67), Expect = 0.13
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG++F S LI H+
Sbjct: 1 GSSGSSG-TGQRPYECIECGKAFKTKSSLICHR 32
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 5e-16
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD 217
+ TGE+P+ C VC K F + LN H RVHT E
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 64.5 bits (158), Expect = 3e-14
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY C VC K F + LN H R+ HT++ +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRV-----HTQETLSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
TGE+PY+C++C K F + +++ H H + G +S
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P+ C VC K F + +L H+R
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSA----------------------------HLNQHLRV 34
Query: 88 HTGERPYQCE 97
HT E
Sbjct: 35 HTQETLSGPS 44
Score = 50.6 bits (122), Expect = 4e-09
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F +L H+R HT E
Sbjct: 4 GSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/77 (18%), Positives = 17/77 (22%), Gaps = 36/77 (46%)
Query: 112 HKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLF 171
T +KPY C C AF +L
Sbjct: 3 SGSSG-----TGEKPYSCNVCGKAFVLSAHL----------------------------- 28
Query: 172 SHQVHMRTHTGERPFQC 188
H+R HT E
Sbjct: 29 --NQHLRVHTQETLSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F + HLR H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 29.8 bits (68), Expect = 0.10
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CNVCG++FV ++L +H
Sbjct: 15 CNVCGKAFVLSAHLNQHL 32
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.4 bits (171), Expect = 5e-16
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGERP+ C VC K FT +S+L H+++HTGE+P
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TGERPY C VC K F+ +S+L H++I HT +KP
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKI-----HTGEKPSGP 43
Score = 54.0 bits (131), Expect = 2e-10
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGERP+ C VC K F+ +S NL H +
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRS----------------------------NLIKHQKI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 53.6 bits (130), Expect = 3e-10
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGERPY C +C K F +S + H+ H G+KP G +S
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G +PY CT C +F + L H + HTGE+P
Sbjct: 5 SSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T ++PY CT C AF+ + ++L
Sbjct: 2 SSGSSG-----TGERPYICTVCGKAFTDR----------------------------SNL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ + HTGE+P
Sbjct: 29 IKHQ---KIHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++P+ CT C FT +S H + H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T ++C VCG++F S LI+HQ
Sbjct: 3 SGSSG-TGERPYICTVCGKAFTDRSNLIKHQ 32
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 5e-16
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C+ C K FT KS L H++ HTGER
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 63.7 bits (156), Expect = 7e-14
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+ TGE+PY+C C K F+ KS L H++ HT ++ +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKC-----HTGERHSGPSS 45
Score = 56.0 bits (136), Expect = 4e-11
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F KS + H+ H G++ G +S
Sbjct: 2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45
Score = 52.9 bits (128), Expect = 5e-10
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+ KS L +H +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKS----------------------------RLRIHQKC 34
Query: 88 HTGERPYQC 96
HTGER
Sbjct: 35 HTGERHSGP 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C SF K L IH + HTGER
Sbjct: 5 SSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 39.1 bits (92), Expect = 4e-05
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C+ C +F+ K L
Sbjct: 2 SSGSSG-----TGEKPYKCSDCGKSFTWKSRL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
++H + HTGER
Sbjct: 29 ---RIHQKCHTGERHSGP 43
Score = 27.9 bits (63), Expect = 0.45
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+ CG+SF S L HQ
Sbjct: 1 GSSGSSG-TGEKPYKCSDCGKSFTWKSRLRIHQ 32
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 6e-16
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+P+ C C K F+QKS L+ H+R HTGE+P
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 64.9 bits (159), Expect = 3e-14
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+PY C C K FSQKS L+ H+R HT +KP +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRT-----HTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 5e-11
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 28/71 (39%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ +GE+P+ C C K FSQKS L H R
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKS----------------------------ILSAHQR 33
Query: 87 THTGERPYQCE 97
THTGE+P
Sbjct: 34 THTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
+ +GE+PY C+ C K F+ KS +++H+ +H G+KP G +
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C +F +K L H RTHTGE+P
Sbjct: 7 GSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C C FS+K L
Sbjct: 2 SSGSSG-----SGEKPYGCNECGKTFSQKSIL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H RTHTGE+P
Sbjct: 29 ---SAHQRTHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+GC C TF+ KS + H RTH
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 30.6 bits (70), Expect = 0.058
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 259 VHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + + CN CG++F + S L HQ
Sbjct: 2 SSGSSG-SGEKPYGCNECGKTFSQKSILSAHQ 32
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 6e-16
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C+ C K F +KS L+ H+R+HTGE P
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+ TGE+PY+C C K F +KS L+ H+RI HT + P +
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRI-----HTGENPSGPSS 45
Score = 53.7 bits (130), Expect = 3e-10
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F +KS L VH R
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKS----------------------------QLHVHQRI 34
Query: 88 HTGERPYQC 96
HTGE P
Sbjct: 35 HTGENPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F KS + H+ H G+ P G +S
Sbjct: 2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
Score = 52.9 bits (128), Expect = 5e-10
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C SF +K L +H R HTGE P
Sbjct: 5 SSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C+ C +F +K L
Sbjct: 2 SSGSSG-----TGEKPYECSDCGKSFIKKSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH R HTGE P
Sbjct: 29 ---HVHQRIHTGENPSGP 43
Score = 30.6 bits (70), Expect = 0.052
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+ CG+SF++ S L HQ
Sbjct: 1 GSSGSSG-TGEKPYECSDCGKSFIKKSQLHVHQ 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.5 bits (171), Expect = 6e-16
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C+VC K F+ + SL+ H+R+H+G++P
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 64.1 bits (157), Expect = 4e-14
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C VC K FS + SL+ H+RI H+ KP +
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRI-----HSGKKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 28/71 (39%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TGE+P++C VC K FS + +L VH R
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQ----------------------------SLSVHQR 33
Query: 87 THTGERPYQCE 97
H+G++P
Sbjct: 34 IHSGKKPSGPS 44
Score = 52.9 bits (128), Expect = 5e-10
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
TGE+PY C +C K F+ + ++ H+ H G KP G +S
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
Score = 50.6 bits (122), Expect = 4e-09
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C +F + L +H R H+G++P
Sbjct: 5 SSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 39.4 bits (93), Expect = 3e-05
Identities = 17/77 (22%), Positives = 23/77 (29%), Gaps = 36/77 (46%)
Query: 112 HKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLF 171
T +KPY C+ C AFS +Q L
Sbjct: 3 SGSSG-----TGEKPYECSVCGKAFSHRQSL----------------------------- 28
Query: 172 SHQVHMRTHTGERPFQC 188
VH R H+G++P
Sbjct: 29 --SVHQRIHSGKKPSGP 43
Score = 29.0 bits (66), Expect = 0.18
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+VCG++F L HQ
Sbjct: 1 GSSGSSG-TGEKPYECSVCGKAFSHRQSLSVHQ 32
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 69.1 bits (170), Expect = 6e-16
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+PF+C C K F+++S+LN H ++HTGE+P
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 7e-14
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P++C C K FS++S+LN H ++ HT +KP +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKL-----HTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 1e-10
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C K F+ +S + H H G+KP G +S
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 3e-10
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PF+CV C K FS++SALN H +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHH----------------------------KL 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C F R+ L +H + HTGE+P
Sbjct: 7 GTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C C FSR+ L
Sbjct: 2 SSGSSG-----TGEKPFKCVECGKGFSRRSAL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH + HTGE+P
Sbjct: 29 ---NVHHKLHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C F+ +S VH + H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 28.6 bits (65), Expect = 0.25
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C CG+ F R S L H
Sbjct: 1 GSSGSSG-TGEKPFKCVECGKGFSRRSALNVHH 32
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 6e-16
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C++C K FT+KS L+ H+++HTGE+P
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 8e-14
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C +C K F++KS L+ H++I HT +KP +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQI-----HTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 28/70 (40%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TGE+P++C +C K F++KS L VH +
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKS----------------------------QLHVHQQ 33
Query: 87 THTGERPYQC 96
HTGE+P
Sbjct: 34 IHTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C IC K F KS + H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C SF +K L +H + HTGE+P
Sbjct: 7 GTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C+ C +F++K L
Sbjct: 2 SSGSSG-----TGEKPYECSICGKSFTKKSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH + HTGE+P
Sbjct: 29 ---HVHQQIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.12
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C++CG+SF + S L HQ
Sbjct: 1 GSSGSSG-TGEKPYECSICGKSFTKKSQLHVHQ 32
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 7e-16
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ + E+P++C C K + ++ +L+ H+RVH GE+
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ + E+PY+CE C K ++++ +L+ H+R+ H +K +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRV-----HMGEKTSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ + E+PY C+ C K + + + H+ H+G+K G +S
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45
Score = 53.3 bits (129), Expect = 4e-10
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ + E+P++C C K ++++ NL++H R
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRL----------------------------NLDMHQRV 34
Query: 88 HTGERPYQC 96
H GE+
Sbjct: 35 HMGEKTSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
S KPY C C + R+ L++H R H GE+
Sbjct: 5 SSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C C ++R+ L
Sbjct: 2 SSGSSG-----SVEKPYKCEDCGKGYNRRLNL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H R H GE+
Sbjct: 29 ---DMHQRVHMGEKTSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S +KP+ C C + + +H R H
Sbjct: 2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 29.4 bits (67), Expect = 0.13
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ +V + C CG+ + R L HQ
Sbjct: 1 GSSGSSG-SVEKPYKCEDCGKGYNRRLNLDMHQ 32
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 8e-16
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++CA C K FT +S+L TH+++HTGE+P
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TGE+PY+C C K F+ +S+L TH++I HT +KP
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKI-----HTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F +S + +H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 5e-10
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+ +S NL H +
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRS----------------------------NLFTHQKI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + L H + HTGE+P
Sbjct: 5 SSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF+ + ++L
Sbjct: 2 SSGSSG-----TGEKPYRCAECGKAFTDR----------------------------SNL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
F+HQ + HTGE+P
Sbjct: 29 FTHQ---KIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT +S H + H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.0 bits (66), Expect = 0.18
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG++F S L HQ
Sbjct: 1 GSSGSSG-TGEKPYRCAECGKAFTDRSNLFTHQ 32
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 69.1 bits (170), Expect = 8e-16
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ GE+ ++C C F+Q SSL H+ VH GE+P
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ GE+ ++C C+ FSQ SSL H+ + H +KP +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNV-----HVGEKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ GE+ + C CD F+ S + H+ HVG+KP G +S
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 9e-10
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
G K + C CD F + L +H H GE+P
Sbjct: 7 GMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE+ ++C C FSQ S +L +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQAS----------------------------SLRLHQNV 34
Query: 88 HTGERPYQC 96
H GE+P
Sbjct: 35 HVGEKPSGP 43
Score = 38.3 bits (90), Expect = 9e-05
Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+K + C CD FS+ L ++H H
Sbjct: 7 GMGEKTWKCRECDMCFSQASSL-------------------------------RLHQNVH 35
Query: 181 TGERPFQC 188
GE+P
Sbjct: 36 VGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S +G+K + C C + F+ S +H H
Sbjct: 2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 27.5 bits (62), Expect = 0.56
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C C F + S L HQ
Sbjct: 15 CRECDMCFSQASSLRLHQ 32
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.0 bits (170), Expect = 9e-16
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+PF+C+ C K F KS+L H+R HTGE+P
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P++C C K F+ KS+L H+R HT +KP +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRT-----HTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PF+C C K F+ KS NL VH RT
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKS----------------------------NLIVHQRT 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C K F KS + H+ +H G+KP G +S
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 7e-10
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C+ C +F K L +H RTHTGE+P
Sbjct: 5 SSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C+ C AF+ K L
Sbjct: 2 SSGSSG-----TGEKPFECSECQKAFNTKSNL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH RTHTGE+P
Sbjct: 29 ---IVHQRTHTGEKPSGP 43
Score = 35.5 bits (83), Expect = 8e-04
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C+ C F +KS VH RTH
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 29.8 bits (68), Expect = 0.086
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C+ C ++F S LI HQ
Sbjct: 1 GSSGSSG-TGEKPFECSECQKAFNTKSNLIVHQ 32
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 9e-16
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD 217
+ +GE+P++C C K + ++ L+ H+RVHTGE+
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 62.9 bits (154), Expect = 1e-13
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+PY+C C K + ++ L+ H+R+ HT +K +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRV-----HTGEKLSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+PY C C K + + + H+ H G+K G +S
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+P++CV C K + ++ +L+ H R
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRL----------------------------DLDFHQRV 34
Query: 88 HTGERPYQC 96
HTGE+
Sbjct: 35 HTGEKLSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C + R+ L+ H R HTGE+
Sbjct: 5 SSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 38.7 bits (91), Expect = 8e-05
Identities = 13/78 (16%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C C + R+ L
Sbjct: 2 SSGSSG-----SGEKPYKCVECGKGYKRRLDL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+
Sbjct: 29 ---DFHQRVHTGEKLSGP 43
Score = 34.8 bits (81), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C + + H R H
Sbjct: 2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 27.9 bits (63), Expect = 0.48
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG+ + R L HQ
Sbjct: 15 CVECGKGYKRRLDLDFHQ 32
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 9e-16
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+PF C C K F+ LN H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P+ C C K FS LN H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRI-----HTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C K F+ + HR H G+KP G +S
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45
Score = 53.7 bits (130), Expect = 3e-10
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PF C+ C K FS LN H+ R
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR----------------------------RI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C +F L H R HTGE+P
Sbjct: 5 SSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C C AFS L
Sbjct: 2 SSGSSG-----TGEKPFDCIDCGKAFSDHIGL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---NQHRRIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C F+ H R H
Sbjct: 2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 27.9 bits (63), Expect = 0.46
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C CG++F L +H+
Sbjct: 1 GSSGSSG-TGEKPFDCIDCGKAFSDHIGLNQHR 32
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 1e-15
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGER ++C+ C K F +KS+L H+R+HTGE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 7e-14
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGER Y+C C K F++KS+L H+RI HT +KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRI-----HTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGER Y C C K FA KS + H+ H G+KP G +S
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45
Score = 54.0 bits (131), Expect = 2e-10
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGER ++C C K F++KS L +H R
Sbjct: 3 SGSSGTGERHYECSECGKAFARKS----------------------------TLIMHQRI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G + Y C+ C +F RK L +H R HTGE+P
Sbjct: 5 SSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T ++ Y C+ C AF+RK L
Sbjct: 2 SSGSSG-----TGERHYECSECGKAFARKSTL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H R HTGE+P
Sbjct: 29 ---IMHQRIHTGEKPSGP 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++ + C+ C F KS +H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 30.9 bits (71), Expect = 0.042
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T ++ C+ CG++F R S LI HQ
Sbjct: 1 GSSGSSG-TGERHYECSECGKAFARKSTLIMHQ 32
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 1e-15
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+PFQC C KRFTQ S L++H+RVHTGE+P
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 62.6 bits (153), Expect = 2e-13
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+P+QCE C KRF+Q S L++H+R+ HT +KP +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRV-----HTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+P+ C+ C KRF S++ SH+ H G+KP G +S
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 8e-10
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+PFQC C KRF+Q S L++H+R
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQR----------------------------V 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KP+ C C F + +L H R HTGE+P
Sbjct: 5 SSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 36.8 bits (86), Expect = 3e-04
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KP+ C C F++ +L
Sbjct: 2 SSGSSG-----SGEKPFQCEECGKRFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---HSHQRVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C FT S H R H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.35
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG+ F ++S+L HQ
Sbjct: 15 CEECGKRFTQNSHLHSHQ 32
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 1e-15
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ G++ F+C C K FTQ SSL H+R+HTGE+P
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ G++ ++C C K F+Q SSL H+RI HT +KP +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRI-----HTGEKPSGPS 44
Score = 55.2 bits (134), Expect = 8e-11
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ G++ + C+ C K F S +T H+ H G+KP G +S
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 7e-10
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ G++ F+C C K F+Q S +L VH R
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSS----------------------------SLTVHQRI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G K + C C +F + L +H R HTGE+P
Sbjct: 5 SSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 8e-05
Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ K + C C F++ L
Sbjct: 2 SSGSSG-----AGKKLFKCNECKKTFTQSSSL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH R HTGE+P
Sbjct: 29 ---TVHQRIHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 4e-04
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G K F C C TFT S VH R H
Sbjct: 2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 28.2 bits (64), Expect = 0.30
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN C ++F + S L HQ
Sbjct: 15 CNECKKTFTQSSSLTVHQ 32
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F + L TH VHTGE+P
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 64.1 bits (157), Expect = 5e-14
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+CE C K F + L TH + HT +KP +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMV-----HTGEKPSGPS 44
Score = 55.6 bits (135), Expect = 6e-11
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F + + +H H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 7e-10
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F + L TH
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHH----------------------------MV 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F + L H HTGE+P
Sbjct: 5 SSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F ++ L
Sbjct: 2 SSGSSG-----TGEKPYKCEECGKGFICRRDL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 ---YTHHMVHTGEKPSGP 43
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F + H H
Sbjct: 2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 28.3 bits (64), Expect = 0.35
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG+ F+ L H
Sbjct: 1 GSSGSSG-TGEKPYKCEECGKGFICRRDLYTHH 32
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F QK++L H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F+QK++L H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRI-----HTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K FA K+ +T H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 9e-10
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+QK+ NL H R
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKA----------------------------NLTQHQRI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F +K L H R HTGE+P
Sbjct: 5 SSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF++K +L
Sbjct: 2 SSGSSG-----TGEKPYRCGECGKAFAQK----------------------------ANL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ R HTGE+P
Sbjct: 29 TQHQ---RIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F K+ H R H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 29.0 bits (66), Expect = 0.18
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG++F + + L +HQ
Sbjct: 1 GSSGSSG-TGEKPYRCGECGKAFAQKANLTQHQ 32
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ GE+P+ C+ C K F+ KS L H R H+GE+P
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 63.7 bits (156), Expect = 7e-14
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ GE+PY C C K FS KS L H R H+ +KP +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRT-----HSGEKPSGPS 44
Score = 56.0 bits (136), Expect = 5e-11
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ GE+PY C C K F+ KSY+ H +H G+KP G +S
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
Score = 55.6 bits (135), Expect = 5e-11
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE+P+ C C K FS KS L +HMRT
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKS----------------------------YLIIHMRT 34
Query: 88 HTGERPYQCE 97
H+GE+P
Sbjct: 35 HSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 1e-10
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C +F K YL IHMRTH+GE+P
Sbjct: 5 SSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 41.4 bits (98), Expect = 6e-06
Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ +KPY C+ C AFS K YL
Sbjct: 2 SSGSSG-----AGEKPYGCSECGKAFSSKSYL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+HMRTH+GE+P
Sbjct: 29 ---IIHMRTHSGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+GC+ C F+SKS +H+RTH
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 31.0 bits (71), Expect = 0.038
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + C+ CG++F SYLI H
Sbjct: 1 GSSGSSG-AGEKPYGCSECGKAFSSKSYLIIHM 32
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C VC K F SSL H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 64.5 bits (158), Expect = 3e-14
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C+VC+K F SSL H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRI-----HTGEKPSGPS 44
Score = 56.4 bits (137), Expect = 4e-11
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY CD+C K F S +T H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45
Score = 52.1 bits (126), Expect = 1e-09
Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C VC K F S +L VH R
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGS----------------------------SLTVHQRI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 49.8 bits (120), Expect = 8e-09
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C SF L +H R HTGE+P
Sbjct: 5 SSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 38.6 bits (91), Expect = 6e-05
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C +F L
Sbjct: 2 SSGSSG-----TGEKPYKCDVCHKSFRYGSSL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH R HTGE+P
Sbjct: 29 ---TVHQRIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C CH +F S VH R H
Sbjct: 2 SSGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 29.4 bits (67), Expect = 0.13
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+VC +SF S L HQ
Sbjct: 1 GSSGSSG-TGEKPYKCDVCHKSFRYGSSLTVHQ 32
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE P++C C K F++K L +H+R H GE+P
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE PY+C C K FS+K L +H+R H +KP +
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRT-----HAGEKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE P++C C K FS+K L H RT
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKY----------------------------QLISHQRT 34
Query: 88 HTGERPYQC 96
H GE+P
Sbjct: 35 HAGEKPSGP 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE PY C C K F+ K + SH+ +H G+KP G +S
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G PY C C +F RK L H RTH GE+P
Sbjct: 5 SSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 39.0 bits (92), Expect = 5e-05
Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T + PY C C AFSRK L
Sbjct: 2 SSGSSG-----TGENPYECHECGKAFSRK----------------------------YQL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
SHQ RTH GE+P
Sbjct: 29 ISHQ---RTHAGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+ P+ C C F+ K Q H RTH
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 31.7 bits (73), Expect = 0.023
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+ CG++F R LI HQ
Sbjct: 1 GSSGSSG-TGENPYECHECGKAFSRKYQLISHQ 32
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ GE+P+QC+ C K F+ L H HT E+P
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 62.2 bits (152), Expect = 3e-13
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ GE+PYQC C K FS L H HT +KP +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWIT-----HTREKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ GE+PY C C K F+ +T H +H +KP G +S
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45
Score = 52.2 bits (126), Expect = 1e-09
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE+P+QC C K FS L H T
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHW----------------------------IT 34
Query: 88 HTGERPYQC 96
HT E+P
Sbjct: 35 HTREKPSGP 43
Score = 49.5 bits (119), Expect = 1e-08
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
G KPY C+ C SF L H THT E+P
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 36.4 bits (85), Expect = 4e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C+ C +F+ + H TH
Sbjct: 2 SSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+KPY C+ C +FS L H TH
Sbjct: 7 GEGEKPYQCSECGKSFSGSYRL-------------------------------TQHWITH 35
Query: 181 TGERPFQC 188
T E+P
Sbjct: 36 TREKPSGP 43
Score = 29.4 bits (67), Expect = 0.15
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ CG+SF L +H
Sbjct: 15 CSECGKSFSGSYRLTQHW 32
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 68.3 bits (168), Expect = 1e-15
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+PF+CA C K F+ S L TH+R+HTGE+P
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P++C C K FS S L TH+RI HT +KP +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRI-----HTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C K F++ S + +H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 5e-10
Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PF+C C K FS S L H R
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISS----------------------------QLATHQRI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 6e-09
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C SF L H R HTGE+P
Sbjct: 5 SSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C C +FS L
Sbjct: 2 SSGSSG-----TGEKPFECAECGKSFSISSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---ATHQRIHTGEKPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C +F+ SQ A H R H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 29.0 bits (66), Expect = 0.21
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C CG+SF S L HQ
Sbjct: 3 SGSSG-TGEKPFECAECGKSFSISSQLATHQ 32
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-15
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGER ++C+ C K F QKS+L+ H+R+H GE+P
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGER Y+C C K F QKS+L+ H+RI H +KP +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRI-----HRGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGER Y C C K F KS ++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 7e-10
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGER ++C C K F QKS L +H R
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKS----------------------------TLSMHQRI 34
Query: 88 HTGERPYQC 96
H GE+P
Sbjct: 35 HRGEKPSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G + Y C+ C +F +K L +H R H GE+P
Sbjct: 5 SSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 38.7 bits (91), Expect = 6e-05
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T ++ Y C+ C AF +K L
Sbjct: 2 SSGSSG-----TGERHYECSECGKAFIQKSTL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H R H GE+P
Sbjct: 29 ---SMHQRIHRGEKPSGP 43
Score = 35.6 bits (83), Expect = 8e-04
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++ + C+ C F KS ++H R H
Sbjct: 2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 28.3 bits (64), Expect = 0.37
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ CG++F++ S L HQ
Sbjct: 15 CSECGKAFIQKSTLSMHQ 32
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-15
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C VC K F+ +SL H+RVH+GE+P
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 64.1 bits (157), Expect = 5e-14
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C+VC K FS +SL H+R+ H+ +KP +
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRV-----HSGEKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY CD+C K F+ + +T H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 6e-10
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 28/71 (39%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TGE+P++C VC K FS ++L H+ R
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQ----------------------------R 33
Query: 87 THTGERPYQCE 97
H+GE+P
Sbjct: 34 VHSGEKPSGPS 44
Score = 49.0 bits (118), Expect = 1e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F L H R H+GE+P
Sbjct: 5 SSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 1e-04
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AFS L
Sbjct: 2 SSGSSG-----TGEKPYECDVCRKAFSHHASL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R H+GE+P
Sbjct: 29 ---TQHQRVHSGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F+ + H R H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 30.2 bits (69), Expect = 0.076
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+VC ++F + L +HQ
Sbjct: 1 GSSGSSG-TGEKPYECDVCRKAFSHHASLTQHQ 32
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 2e-15
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P+ C C K F QKS LN H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 8e-14
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY C C K F QKS LN H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRI-----HTGEKPSGPS 44
Score = 54.8 bits (133), Expect = 1e-10
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F KS++ HR H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
Score = 52.9 bits (128), Expect = 5e-10
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P+ C C K F QKS LN H+ R
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR----------------------------RI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 2e-09
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C SF +K +L H R HTGE+P
Sbjct: 5 SSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C +F +K +L
Sbjct: 2 SSGSSG-----TGEKPYICNECGKSFIQKSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---NRHRRIHTGEKPSGP 43
Score = 36.0 bits (84), Expect = 6e-04
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C +F KS H R H
Sbjct: 2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 30.6 bits (70), Expect = 0.046
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T ++CN CG+SF++ S+L RH+
Sbjct: 1 GSSGSSG-TGEKPYICNECGKSFIQKSHLNRHR 32
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.0 bits (167), Expect = 2e-15
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +G++P++C C K F Q LN HKRVHTGER
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 61.4 bits (150), Expect = 5e-13
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ +G++PY+C+ C K F Q LN HKR+ HT ++
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRV-----HTGERSSGP 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +G++P++C C K F Q LN HK R
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHK----------------------------RV 34
Query: 88 HTGERPYQCE 97
HTGER
Sbjct: 35 HTGERSSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C +F + +L H R HTGER
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 50.6 bits (122), Expect = 3e-09
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +G++PY C C K F ++ H+ H G++ G +S
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS 45
Score = 36.7 bits (86), Expect = 3e-04
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KP+ C C TF H R H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/68 (20%), Positives = 17/68 (25%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ KPY C C F + +L H R H
Sbjct: 7 GSGKKPYECKECRKTFIQIGHL-------------------------------NQHKRVH 35
Query: 181 TGERPFQC 188
TGER
Sbjct: 36 TGERSSGP 43
Score = 29.0 bits (66), Expect = 0.17
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C C ++F++ +L +H+
Sbjct: 15 CKECRKTFIQIGHLNQHK 32
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 2e-15
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P+ CA C K FT +S+L H+++HT ++P
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY C C K F+ +S+L H++I HT+ KP +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKI-----HTKQKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F ++S + H+ H KP G +S
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45
Score = 52.5 bits (127), Expect = 9e-10
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P+ C C K F+ +S NL H +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRS----------------------------NLIKHQKI 34
Query: 88 HTGERPYQCE 97
HT ++P
Sbjct: 35 HTKQKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + L H + HT ++P
Sbjct: 5 SSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF+ + ++L
Sbjct: 2 SSGSSG-----TGEKPYICAECGKAFTIR----------------------------SNL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ + HT ++P
Sbjct: 29 IKHQ---KIHTKQKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT +S H + H
Sbjct: 2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 30.2 bits (69), Expect = 0.079
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T ++C CG++F S LI+HQ
Sbjct: 1 GSSGSSG-TGEKPYICAECGKAFTIRSNLIKHQ 32
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 2e-15
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG + F+C C K FT+KS+L+ H+++HTGE+P
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 61.4 bits (150), Expect = 5e-13
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TG + ++C C K F++KS+L+ H++I HT +KP +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKI-----HTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TG + + C C K F KS ++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45
Score = 51.8 bits (125), Expect = 1e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG + F+C C K F++KS L +H +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKS----------------------------TLSMHQKI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 51.8 bits (125), Expect = 2e-09
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G K + CT C +F RK L +H + HTGE+P
Sbjct: 5 SSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T K + CT C AF+RK L
Sbjct: 2 SSGSSG-----TGGKHFECTECGKAFTRKSTL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H + HTGE+P
Sbjct: 29 ---SMHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G K F CT C FT KS ++H + H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.4 bits (67), Expect = 0.12
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T G + C CG++F R S L HQ
Sbjct: 1 GSSGSSG-TGGKHFECTECGKAFTRKSTLSMHQ 32
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 68.3 bits (168), Expect = 2e-15
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTH-KRMH 60
+ + C C +F R+ +L+ H R+HT E+P+ C +C + F+++ L H +++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 67.9 bits (167), Expect = 2e-15
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSH 232
R F C VC++ F ++ L H R HT E+PY C +C++ F + + H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 67.1 bits (165), Expect = 5e-15
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH-KRIH 116
+ C+ C F +++L+ H R+HT E+PY C +CN+ F+++ L H ++IH
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 64.0 bits (157), Expect = 8e-14
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 32/88 (36%)
Query: 125 KPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGER 184
+ + C C AF+R+++L + H R+HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHL-------------------------------KRHYRSHTNEK 29
Query: 185 PFQCAVCSKRFTQKSSLNTH-KRVHTGE 211
P+ C +C++ FT++ L H +++H+G
Sbjct: 30 PYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 58.3 bits (142), Expect = 8e-12
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
R + CEVC + F+++ L H R HT +KPY C C+ AF+R+ L
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-----HTNEKPYPCGLCNRAFTRRDLL 46
Score = 50.6 bits (122), Expect = 5e-09
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
R + C++C + FA + ++ H SH +KP+ C C+ FT + H + H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHM-RTHTGE 35
H+ KPY C C+ +F R+ L H + H+G
Sbjct: 25 HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.8 bits (76), Expect = 0.013
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
VC VC R+F R +L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 67.9 bits (167), Expect = 2e-15
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG +P+ C+ C+K F+ KS L H+R HTG +P
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 62.2 bits (152), Expect = 3e-13
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TG +PY C C K FS KS L H+R HT KP +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRS-----HTGVKPSGPS 44
Score = 55.2 bits (134), Expect = 8e-11
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TG +PY C C K F++KS + H+ SH G KP G +S
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45
Score = 54.8 bits (133), Expect = 1e-10
Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG +P+ C C K FS KS L VH R+
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKS----------------------------QLIVHQRS 34
Query: 88 HTGERPYQC 96
HTG +P
Sbjct: 35 HTGVKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C+ C +F K L +H R+HTG +P
Sbjct: 5 SSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 39.8 bits (94), Expect = 2e-05
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KP+GC+ C TF+ KSQ VH R+H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 39.8 bits (94), Expect = 3e-05
Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KPY C+ C FS K L
Sbjct: 2 SSGSSG-----TGVKPYGCSQCAKTFSLKSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH R+HTG +P
Sbjct: 29 ---IVHQRSHTGVKPSGP 43
Score = 30.6 bits (70), Expect = 0.058
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+ C ++F S LI HQ
Sbjct: 1 GSSGSSG-TGVKPYGCSQCAKTFSLKSQLIVHQ 32
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 67.6 bits (166), Expect = 2e-15
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+ GE+P++C C K F+QK SL H RVHTG P +
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 61.0 bits (149), Expect = 5e-13
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
+ GE+PY+C+ C K FSQK SL H R+ HT P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRV-----HTGSGPS 40
Score = 51.4 bits (124), Expect = 2e-09
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 28/67 (41%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE+P++C C K FSQK +L VH+R
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKG----------------------------SLIVHIRV 33
Query: 88 HTGERPY 94
HTG P
Sbjct: 34 HTGSGPS 40
Score = 49.5 bits (119), Expect = 9e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
GE+PY CD C K F+ K + H H G P
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPF 38
G KPY C C +F +K L +H+R HTG P
Sbjct: 4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 232 HRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S G+KP+ C C F+ K VH+R H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 36.0 bits (84), Expect = 5e-04
Identities = 17/75 (22%), Positives = 20/75 (26%), Gaps = 36/75 (48%)
Query: 112 HKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLF 171
+KPY C C AFS+K L
Sbjct: 2 SSGSS-----GGEKPYRCDQCGKAFSQKGSL----------------------------- 27
Query: 172 SHQVHMRTHTGERPF 186
VH+R HTG P
Sbjct: 28 --IVHIRVHTGSGPS 40
Score = 26.4 bits (59), Expect = 1.5
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + C+ CG++F + LI H
Sbjct: 2 SSGSS-GGEKPYRCDQCGKAFSQKGSLIVHI 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 2e-15
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C VCSK FTQK+ L H++ HTGE+P
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 62.2 bits (152), Expect = 3e-13
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C+VC+K F+QK+ L H++ HT +KP +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKT-----HTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C VC K F+QK+ +L H +T
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKA----------------------------HLAQHQKT 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 9e-10
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
+ TGE+PY C +C K F K+++ H+ +H G+KP G +
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F +K +L H +THTGE+P
Sbjct: 7 GTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF++K +L
Sbjct: 2 SSGSSG-----TGEKPYECKVCSKAFTQKAHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H +THTGE+P
Sbjct: 29 ---AQHQKTHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.001
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT K+ A H +TH
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 29.8 bits (68), Expect = 0.096
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C VC ++F + ++L +HQ
Sbjct: 1 GSSGSSG-TGEKPYECKVCSKAFTQKAHLAQHQ 32
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 68.0 bits (167), Expect = 2e-15
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG++PF+C C K F K +L TH+R+HTGE+
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 63.7 bits (156), Expect = 6e-14
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+ TG++P++C C K F K +L TH+RI HT +K +G
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRI-----HTGEKSGPSSG 45
Score = 54.9 bits (133), Expect = 1e-10
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TG++PF+C C K F K NL H R
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKG----------------------------NLVTHQR 33
Query: 87 THTGERPYQC 96
HTGE+
Sbjct: 34 IHTGEKSGPS 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
+ TG++P+ C C K F K + +H+ H G+K +
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 51.8 bits (125), Expect = 1e-09
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ CT C SF K L H R HTGE+
Sbjct: 5 SSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KP+ CT C +F K L
Sbjct: 2 SSGSSG-----TGQKPFECTHCGKSFRAKGNL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+
Sbjct: 29 ---VTHQRIHTGEKSGPS 43
Score = 36.0 bits (84), Expect = 5e-04
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KPF CT C +F +K H R H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 28.7 bits (65), Expect = 0.22
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C CG+SF L+ HQ
Sbjct: 1 GSSGSSG-TGQKPFECTHCGKSFRAKGNLVTHQ 32
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 2e-15
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG +P+ C C K F+ SSL TH+ +HTGE+P
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 7e-14
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TG +PY C C K FS SSL TH+ I HT +KP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVI-----HTGEKPSGP 43
Score = 53.7 bits (130), Expect = 3e-10
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TG +PY C+ C K F+V S +T+H+ H G+KP G +S
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 9e-10
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG +P+ C C K FS S+L TH+
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQ----------------------------VI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 6e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F L H HTGE+P
Sbjct: 5 SSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 18/78 (23%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KPY C C AFS +SL
Sbjct: 2 SSGSSG-----TGVKPYMCNECGKAFSVY----------------------------SSL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+HQ HTGE+P
Sbjct: 29 TTHQ---VIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KP+ C C F+ S H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 28.3 bits (64), Expect = 0.33
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T ++CN CG++F S L HQ
Sbjct: 1 GSSGSSG-TGVKPYMCNECGKAFSVYSSLTTHQ 32
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+ + C C K F++ L H+R+H+GE+P
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 64.1 bits (157), Expect = 6e-14
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+ Y C+ C K FS+ L H+R+ H+ +KP +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERL-----HSGEKPSGPS 44
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+ Y C C K F+ + H H G+KP G +S
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45
Score = 52.5 bits (127), Expect = 8e-10
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+ + C C K FS+ L H+ R
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHE----------------------------RL 34
Query: 88 HTGERPYQC 96
H+GE+P
Sbjct: 35 HSGEKPSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G K Y+C C SF R P L H R H+GE+P
Sbjct: 5 SSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 38.3 bits (90), Expect = 8e-05
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +K Y+C C +FSR L
Sbjct: 2 SSGSSG-----TGEKLYNCKECGKSFSRA----------------------------PCL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H+ R H+GE+P
Sbjct: 29 LKHE---RLHSGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+K + C C +F+ H R H
Sbjct: 2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 29.8 bits (68), Expect = 0.086
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG+SF R L++H+
Sbjct: 1 GSSGSSG-TGEKLYNCKECGKSFSRAPCLLKHE 32
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD 217
+ TGE+PFQC C F+ SL H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 62.2 bits (152), Expect = 3e-13
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TGE+P+QC+ C FS SL H R H P
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS-----HERTDPSGP 43
Score = 52.6 bits (127), Expect = 7e-10
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PFQC C FS +L H+R+
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSC----------------------------SLFKHLRS 34
Query: 88 HTGERPYQC 96
H P
Sbjct: 35 HERTDPSGP 43
Score = 51.8 bits (125), Expect = 1e-09
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C F+ + H SH P G +S
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45
Score = 49.1 bits (118), Expect = 1e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C +F L H+R+H P
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 37.6 bits (88), Expect = 1e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C + F+ HLR+H
Sbjct: 2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSH 35
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
T +KP+ C C FS L H+R+H
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSL-------------------------------FKHLRSH 35
Query: 181 TGERPFQC 188
P
Sbjct: 36 ERTDPSGP 43
Score = 24.9 bits (55), Expect = 5.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
C CG +F L +H
Sbjct: 13 FQCKECGMNFSWSCSLFKHL 32
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ G P++C+ C K F+ K L H+R+HT E+P
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 61.8 bits (151), Expect = 3e-13
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ G PY+C C K FS K L H+R+ HT +KP +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRM-----HTREKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ G PY C C+K F+ K + H+ H +KP G +S
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45
Score = 52.9 bits (128), Expect = 5e-10
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G PY C+ C+ SF K L +H R HT E+P
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 52.5 bits (127), Expect = 9e-10
Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ G P++C C K FS K L VH R
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKL----------------------------RLLVHQRM 34
Query: 88 HTGERPYQC 96
HT E+P
Sbjct: 35 HTREKPSGP 43
Score = 40.2 bits (95), Expect = 2e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G P+ C+ C +F+ K + VH R H
Sbjct: 2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
PY C+ C+ +FS K L VH R H
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRL-------------------------------LVHQRMH 35
Query: 181 TGERPFQC 188
T E+P
Sbjct: 36 TREKPSGP 43
Score = 27.5 bits (62), Expect = 0.70
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ C +SF L+ HQ
Sbjct: 15 CSQCEKSFSGKLRLLVHQ 32
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ + + QC C + FT KS LN H+R+HTGE+P
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 59.5 bits (145), Expect = 2e-12
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ + + +QC C + F+ KS LN H+RI HT +KP +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRI-----HTGEKPSGPS 44
Score = 52.6 bits (127), Expect = 8e-10
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ + + + C C + F +KS++ H+ H G+KP G +S
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45
Score = 48.7 bits (117), Expect = 2e-08
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ + + QC C + F+ KS LN H+R+H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
S K + C C F K +L H R HTGE+P
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 12/34 (35%), Positives = 12/34 (35%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S K C C FT KS H R H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 32.9 bits (76), Expect = 0.007
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ K + C C F+ K +L H R H
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHL-------------------------------NQHQRIH 35
Query: 181 TGERPFQC 188
TGE+P
Sbjct: 36 TGEKPSGP 43
Score = 31.4 bits (72), Expect = 0.031
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
H C+ CGR F S+L +HQ
Sbjct: 13 HQCHECGRGFTLKSHLNQHQ 32
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P+ C C K F S L H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 7e-14
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY CE C K F S L H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRI-----HTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 3e-10
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F S + H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
Score = 51.8 bits (125), Expect = 1e-09
Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P+ C C K F S L H+ R
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQ----------------------------RI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY+C C +F L+ H R HTGE+P
Sbjct: 5 SSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY+C C AF L
Sbjct: 2 SSGSSG-----TGEKPYNCEECGKAFIHDSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
Q H R HTGE+P
Sbjct: 29 ---QEHQRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F SQ H R H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 28.6 bits (65), Expect = 0.24
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG++F+ DS L HQ
Sbjct: 15 CEECGKAFIHDSQLQEHQ 32
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 3e-15
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+P++C C K FTQ S L H R+HTGE+P
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 9e-14
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+PY+C C K F+Q S L H RI HT +KP +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRI-----HTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+PY C+ C K F S++T+H H G+KP G +S
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45
Score = 51.0 bits (123), Expect = 2e-09
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+P++C C K F+Q S L H R
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWR----------------------------I 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C F + +L H R HTGE+P
Sbjct: 5 SSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 14/78 (17%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C C F++ +L
Sbjct: 2 SSGSSG-----SGEKPYKCNECGKVFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---TNHWRIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT S H R H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 28.6 bits (65), Expect = 0.25
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F ++S+L H
Sbjct: 15 CNECGKVFTQNSHLTNHW 32
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 67.5 bits (166), Expect = 3e-15
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG +P+ C C K F KS L H R HTGE +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 61.3 bits (150), Expect = 5e-13
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TG +PY C C K F KS L H R HT +
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRT-----HTGESGPSS 43
Score = 54.0 bits (131), Expect = 2e-10
Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG +P+ C C K F KS L +H RT
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKS----------------------------YLIIHTRT 34
Query: 88 HTGERPYQC 96
HTGE
Sbjct: 35 HTGESGPSS 43
Score = 52.9 bits (128), Expect = 5e-10
Identities = 18/37 (48%), Positives = 20/37 (54%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F K YL IH RTHTGE
Sbjct: 7 GTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
+ TG +PY C+ C K F KSY+ H +H G+
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 42.1 bits (100), Expect = 4e-06
Identities = 18/78 (23%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KPY C C AF K YL
Sbjct: 2 SSGSSG-----TGMKPYVCNECGKAFRSKSYL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H RTHTGE
Sbjct: 29 ---IIHTRTHTGESGPSS 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KP+ C C F SKS +H RTH
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 31.3 bits (72), Expect = 0.027
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T +VCN CG++F SYLI H
Sbjct: 1 GSSGSSG-TGMKPYVCNECGKAFRSKSYLIIHT 32
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD 217
+ +GE+PF+C C K F S +H+R H+GE+P
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 61.4 bits (150), Expect = 5e-13
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+P++CE C K F S +H+R H+ +KP +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRS-----HSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 1e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+P+ C+ C K F S SH+ SH G+KP G +S
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+PF+C C K F S H R+
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNS----------------------------QCYSHQRS 34
Query: 88 HTGERPYQCE 97
H+GE+P
Sbjct: 35 HSGEKPSGPS 44
Score = 49.9 bits (120), Expect = 6e-09
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KP+ C C F H R+H+GE+P
Sbjct: 5 SSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KP+ C C F +
Sbjct: 2 SSGSSG-----SGEKPFKCEECGKGFYTN----------------------------SQC 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+SHQ R+H+GE+P
Sbjct: 29 YSHQ---RSHSGEKPSGP 43
Score = 36.0 bits (84), Expect = 7e-04
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C F + SQ H R+H
Sbjct: 2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 29.4 bits (67), Expect = 0.11
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + C CG+ F +S HQ
Sbjct: 1 GSSGSSG-SGEKPFKCEECGKGFYTNSQCYSHQ 32
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 3e-15
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F+ +SSL TH+ +HTG++P
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K FS +SSL TH+ I HT KP +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAI-----HTGKKPSGPS 44
Score = 52.5 bits (127), Expect = 7e-10
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F+V+S +T+H+ H G KP G +S
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
Score = 51.0 bits (123), Expect = 2e-09
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K FS +S+L TH+
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQ----------------------------AI 34
Query: 88 HTGERPYQCE 97
HTG++P
Sbjct: 35 HTGKKPSGPS 44
Score = 49.1 bits (118), Expect = 1e-08
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + L H HTG++P
Sbjct: 5 SSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AFS + L
Sbjct: 2 SSGSSG-----TGEKPYECNQCGKAFSVRSSL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTG++P
Sbjct: 29 ---TTHQAIHTGKKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F+ +S H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 28.3 bits (64), Expect = 0.30
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + CN CG++F S L HQ
Sbjct: 1 GSSGSSG-TGEKPYECNQCGKAFSVRSSLTTHQ 32
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 68.1 bits (167), Expect = 3e-15
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 172 SHQVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYV 229
+ + RP+ C V C +RF++ L H R+HTG++P+ C IC + F+ ++
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 230 TSHRWSH 236
T+H +H
Sbjct: 66 TTHIRTH 72
Score = 65.0 bits (159), Expect = 4e-14
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 2 KLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRM 59
+ +PY C +CD F R L H+R HTG++PFQC +C++ FS+ L TH R
Sbjct: 12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 71
Query: 60 H 60
H
Sbjct: 72 H 72
Score = 63.5 bits (155), Expect = 2e-13
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 30/91 (32%)
Query: 28 HMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHM 85
RP+ C V C +RFS+ L H +
Sbjct: 10 LNYVVPKMRPYACPVESCDRRFSRSDELTRH----------------------------I 41
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
R HTG++P+QC +C + FS+ L TH R H
Sbjct: 42 RIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 57.3 bits (139), Expect = 3e-11
Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 40/110 (36%)
Query: 102 RFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGN 159
++L + +PY C CD FSR L
Sbjct: 2 EPHPMNNLLNYVVPK-------MRPYACPVESCDRRFSRSDEL----------------- 37
Query: 160 NTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
H+R HTG++PFQC +C + F++ L TH R HT
Sbjct: 38 --------------TRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 54.6 bits (132), Expect = 2e-10
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 80 NLEVHMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFS 137
NL ++ RPY C E C++RFS+ L H RIH T KP+ C C FS
Sbjct: 8 NLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIH-----TGQKPFQCRICMRNFS 60
Query: 138 RKQYL 142
R +L
Sbjct: 61 RSDHL 65
Score = 54.6 bits (132), Expect = 3e-10
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 198 KSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKS 255
N V RPYAC + CD+RF+ +T H H G KPF C C F+
Sbjct: 4 HPMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63
Query: 256 QFAVHLRTH 264
H+RTH
Sbjct: 64 HLTTHIRTH 72
Score = 41.1 bits (97), Expect = 2e-05
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHT 33
+++H+G KP+ C C +F R +L H+RTHT
Sbjct: 41 IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 3e-15
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P +C C K F KS L H+R H ++
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 60.7 bits (148), Expect = 1e-12
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P +C C K F KS L H+R H +DK +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRT-----HVDDKHSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P C C K F KS + H+ +HV DK G +S
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45
Score = 53.3 bits (129), Expect = 3e-10
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP CT C +FC K L +H RTH ++
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 52.9 bits (128), Expect = 6e-10
Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P +C C K F KS L +H RT
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKS----------------------------QLIMHQRT 34
Query: 88 HTGERPYQC 96
H ++
Sbjct: 35 HVDDKHSGP 43
Score = 39.8 bits (94), Expect = 3e-05
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP CT C F KSQ +H RTH
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 38.3 bits (90), Expect = 9e-05
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
T +KP CT C AF K L +H RTH
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQL-------------------------------IMHQRTH 35
Query: 181 TGERPFQC 188
++
Sbjct: 36 VDDKHSGP 43
Score = 30.2 bits (69), Expect = 0.075
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T C CG++F S LI HQ
Sbjct: 3 SGSSG-TGEKPCKCTECGKAFCWKSQLIMHQ 32
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 4e-15
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F +SSL H+ H+GE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 61.8 bits (151), Expect = 3e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F +SSL H+ H+ +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQAT-----HSGEKPSGPS 44
Score = 54.5 bits (132), Expect = 2e-10
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F +S + H+ +H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
Score = 52.2 bits (126), Expect = 1e-09
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F +S +L +H T
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARS----------------------------SLAIHQAT 34
Query: 88 HTGERPYQC 96
H+GE+P
Sbjct: 35 HSGEKPSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + L IH TH+GE+P
Sbjct: 5 SSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 15/78 (19%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF + L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKAFRARSSL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
+H TH+GE+P
Sbjct: 29 ---AIHQATHSGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F ++S A+H TH
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 27.9 bits (63), Expect = 0.40
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + CN CG++F S L HQ
Sbjct: 1 GSSGSSG-TGEKPYKCNECGKAFRARSSLAIHQ 32
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 4e-15
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGERP +C C K F Q + L H+R+HTGE+P
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 62.1 bits (152), Expect = 3e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGERP++C C K F Q + L H+RI HT +KP +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRI-----HTGEKPSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGERP+ C+ C K F +++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45
Score = 51.7 bits (125), Expect = 2e-09
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGERP +C C K F Q + +L H R
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSA----------------------------HLIQHQRI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 3e-09
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G +P+ C C SF + +L H R HTGE+P
Sbjct: 5 SSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T ++P+ C C +F + +L
Sbjct: 2 SSGSSG-----TGERPHKCNECGKSFIQSAHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---IQHQRIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.006
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++P C C +F + H R H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 30.9 bits (71), Expect = 0.037
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T H CN CG+SF++ ++LI+HQ
Sbjct: 1 GSSGSSG-TGERPHKCNECGKSFIQSAHLIQHQ 32
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 4e-15
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+P++C+ C K F + + LN H+R+HTG RP
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 63.3 bits (155), Expect = 9e-14
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+PY+C C K F + + LN H+RI HT +P +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRI-----HTGYRPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+PY C C K F +++ HR H G +P G +S
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
Score = 51.0 bits (123), Expect = 2e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+P++C C K F + + LN H+R
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRR----------------------------I 34
Query: 88 HTGERPYQCE 97
HTG RP
Sbjct: 35 HTGYRPSGPS 44
Score = 50.2 bits (121), Expect = 6e-09
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C+ C +F R +L H R HTG RP
Sbjct: 5 SSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 37.9 bits (89), Expect = 1e-04
Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C+ C AF R +L
Sbjct: 2 SSGSSG-----SGEKPYKCSECGKAFHRHTHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTG RP
Sbjct: 29 ---NEHRRIHTGYRPSGP 43
Score = 30.5 bits (70), Expect = 0.046
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C+ C F + H R H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 28.6 bits (65), Expect = 0.25
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + + C+ CG++F R ++L H+
Sbjct: 1 GSSGSSG-SGEKPYKCSECGKAFHRHTHLNEHR 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 4e-15
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+P+ C C K F + L H+R+HTGE+P
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 9e-14
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+PY C+ C K F + L H+RI HT +KP +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRI-----HTGEKPSGPS 44
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+PY CD C K F + + + H+ H G+KP G +S
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+P+ C C K F + L H+ R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQ----------------------------RI 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C +F L H R HTGE+P
Sbjct: 5 SSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C C AF L
Sbjct: 2 SSGSSG-----SGEKPYVCDYCGKAFGLS----------------------------AEL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ R HTGE+P
Sbjct: 29 VRHQ---RIHTGEKPSGP 43
Score = 32.1 bits (74), Expect = 0.016
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F ++ H R H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + +VC+ CG++F + L+RHQ
Sbjct: 3 SGSSG-SGEKPYVCDYCGKAFGLSAELVRHQ 32
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 67.2 bits (165), Expect = 4e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P+ C C K F S L H+RVH+GE+P
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 63.0 bits (154), Expect = 1e-13
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY C+ C K F S L H+R+ H+ +KP +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRV-----HSGEKPSGPS 44
Score = 53.0 bits (128), Expect = 5e-10
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCT 245
+ TGE+PY C C K F S + H+ H G+KP G +
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 51.0 bits (123), Expect = 3e-09
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P+ C C K F S L H+ R
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQ----------------------------RV 34
Query: 88 HTGERPYQCE 97
H+GE+P
Sbjct: 35 HSGEKPSGPS 44
Score = 49.1 bits (118), Expect = 1e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY+C C SF L H R H+GE+P
Sbjct: 5 SSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 37.6 bits (88), Expect = 2e-04
Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY+C C +F + L
Sbjct: 2 SSGSSG-----TGEKPYNCKECGKSFRWA----------------------------SCL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ R H+GE+P
Sbjct: 29 LKHQ---RVHSGEKPSGP 43
Score = 33.7 bits (78), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C +F S H R H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 27.5 bits (62), Expect = 0.59
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG+SF S L++HQ
Sbjct: 1 GSSGSSG-TGEKPYNCKECGKSFRWASCLLKHQ 32
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 4e-15
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F S+L TH+ +HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 63.7 bits (156), Expect = 8e-14
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F S+L TH+ I HT +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVI-----HTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 1e-10
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F S +T+H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F S L TH+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQ----------------------------VI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 4e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F L H HTGE+P
Sbjct: 5 SSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 15/78 (19%), Positives = 18/78 (23%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKAFRAHSNL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 ---TTHQVIHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F + S H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 27.9 bits (63), Expect = 0.46
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG++F S L HQ
Sbjct: 15 CNECGKAFRAHSNLTTHQ 32
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 5e-15
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+PF+C C K + Q+ L H+RVHTGE+P
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 61.4 bits (150), Expect = 5e-13
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P++C C K ++Q+ L H+R+ HT +KP +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRV-----HTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C K + + ++T H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
Score = 51.8 bits (125), Expect = 2e-09
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+PF+C C K ++Q+ +L H R
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRV----------------------------HLTQHQRV 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 50.2 bits (121), Expect = 5e-09
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C S+ ++ +L H R HTGE+P
Sbjct: 5 SSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C C +++++ +L
Sbjct: 2 SSGSSG-----TGEKPFKCGECGKSYNQRVHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---TQHQRVHTGEKPSGP 43
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C ++ + H R H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 28.3 bits (64), Expect = 0.34
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG+S+ + +L +HQ
Sbjct: 15 CGECGKSYNQRVHLTQHQ 32
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 5e-15
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GERPF+C C K F ++S L H R+H+ E+
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 61.0 bits (149), Expect = 8e-13
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GERP++C C K F ++S L H R+ H+ +K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRL-----HSREKSSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GERP+ C+ C K F +S++ H H +K G +S
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45
Score = 52.2 bits (126), Expect = 1e-09
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG +P+ C C F R+ +L H+R H+ E+
Sbjct: 7 GSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GERPF+C C K F ++S +L H+R
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRS----------------------------HLAGHLRL 34
Query: 88 HTGERPYQC 96
H+ E+
Sbjct: 35 HSREKSSGP 43
Score = 38.7 bits (91), Expect = 7e-05
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++PF C C F +S A HLR H
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ ++P+ C C F R+ +L H+R H
Sbjct: 7 GSGERPFKCNECGKGFGRRSHL-------------------------------AGHLRLH 35
Query: 181 TGERPFQC 188
+ E+
Sbjct: 36 SREKSSGP 43
Score = 30.6 bits (70), Expect = 0.058
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F R S+L H
Sbjct: 15 CNECGKGFGRRSHLAGHL 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 5e-15
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F+Q S L H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 63.3 bits (155), Expect = 1e-13
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K FSQ S L H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRI-----HTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 5e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F+ S + H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K FSQ S L H+ R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQ----------------------------RI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + L H R HTGE+P
Sbjct: 5 SSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AFS+ L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKAFSQTSKL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---ARHQRIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F+ S+ A H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.0 bits (66), Expect = 0.20
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG++F + S L RHQ
Sbjct: 15 CNECGKAFSQTSKLARHQ 32
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 5e-15
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+PF+C C K F Q L +H R+HTGE+P
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 61.7 bits (151), Expect = 3e-13
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+P++C+ C K F Q L +H RI HT +KP +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRI-----HTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 7e-10
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ +GE+P+ C C K F ++ SH H G+KP G +S
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45
Score = 51.3 bits (124), Expect = 2e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+PF+C C K F Q +L H+R
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNI----------------------------HLASHLRI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KP+ C C +F + +L H+R HTGE+P
Sbjct: 5 SSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KP+ C C AF + +L
Sbjct: 2 SSGSSG-----SGEKPFKCKECGKAFRQNIHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H+R HTGE+P
Sbjct: 29 ---ASHLRIHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.008
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KPF C C F A HLR H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 28.2 bits (64), Expect = 0.33
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + C CG++F ++ +L H
Sbjct: 1 GSSGSSG-SGEKPFKCKECGKAFRQNIHLASHL 32
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 6e-15
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K FTQ S L H+R+HTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 61.8 bits (151), Expect = 3e-13
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F+Q S L H+RI HT KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRI-----HTGVKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F S++ +H+ H G KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45
Score = 51.0 bits (123), Expect = 3e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+Q S L H+ R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQ----------------------------RI 34
Query: 88 HTGERPYQCE 97
HTG +P
Sbjct: 35 HTGVKPSGPS 44
Score = 49.8 bits (120), Expect = 7e-09
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F + +L H R HTG +P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F++ +L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKVFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTG +P
Sbjct: 29 ---ANHQRIHTGVKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT S A H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 29.0 bits (66), Expect = 0.16
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F ++S+L HQ
Sbjct: 15 CNECGKVFTQNSHLANHQ 32
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 6e-15
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 175 VHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG++P++C C K FTQ S L H+ +HTGE+P
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 62.9 bits (154), Expect = 1e-13
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 83 VHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TG++PY+C C K F+Q S L H+ I HT +KP +
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGI-----HTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 5e-10
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TG++PY C+ C K F S++ HR H G+KP G +S
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 50.2 bits (121), Expect = 5e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG++P++C C K F+Q S L H+
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRG----------------------------I 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 5e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F + +L H HTGE+P
Sbjct: 5 SSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/78 (17%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KPY C C F++ +L
Sbjct: 2 SSGSSG-----TGKKPYKCNECGKVFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 ---ARHRGIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.009
Identities = 13/34 (38%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KP+ C C FT S A H H
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 30.2 bits (69), Expect = 0.080
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + CN CG+ F ++S+L RH+
Sbjct: 1 GSSGSSG-TGKKPYKCNECGKVFTQNSHLARHR 32
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 6e-15
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C VC K F S L H VH+GERP
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 62.5 bits (153), Expect = 2e-13
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C+VC K F S L H + H+ ++P +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV-----HSGERPSGPS 44
Score = 54.1 bits (131), Expect = 2e-10
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
TGE+PY C +C K F V S++ H H G++P G +S
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45
Score = 50.6 bits (122), Expect = 4e-09
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C VC K F S L H +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSV---------------------------- 34
Query: 88 HTGERPYQC 96
H+GERP
Sbjct: 35 HSGERPSGP 43
Score = 48.3 bits (116), Expect = 2e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F +L H H+GERP
Sbjct: 5 SSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 36.3 bits (85), Expect = 5e-04
Identities = 15/77 (19%), Positives = 18/77 (23%), Gaps = 36/77 (46%)
Query: 112 HKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLF 171
T +KPY C C AF +L
Sbjct: 3 SGSSG-----TGEKPYKCQVCGKAFRVSSHL----------------------------- 28
Query: 172 SHQVHMRTHTGERPFQC 188
H H+GERP
Sbjct: 29 --VQHHSVHSGERPSGP 43
Score = 31.3 bits (72), Expect = 0.031
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F S H H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 30.2 bits (69), Expect = 0.067
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C VCG++F S+L++H
Sbjct: 15 CQVCGKAFRVSSHLVQHH 32
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 6e-15
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P +C C K F+ S L H+R+HTGE P
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 61.8 bits (151), Expect = 4e-13
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+P++C C K FS S L H+RI HT + P +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRI-----HTGENPSGPS 44
Score = 52.2 bits (126), Expect = 1e-09
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+ C C K F+ S + H+ H G+ P G +S
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P +C C K FS S L VH R
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNS----------------------------QLIVHQRI 34
Query: 88 HTGERPYQC 96
HTGE P
Sbjct: 35 HTGENPSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ C C SF L +H R HTGE P
Sbjct: 5 SSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 16/78 (20%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KP+ C C +FS L
Sbjct: 2 SSGSSG-----TGEKPHECRECGKSFSFNSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH R HTGE P
Sbjct: 29 ---IVHQRIHTGENPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP C C +F+ SQ VH R H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.0 bits (66), Expect = 0.17
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T H C CG+SF +S LI HQ
Sbjct: 3 SGSSG-TGEKPHECRECGKSFSFNSQLIVHQ 32
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 8e-15
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F S L+ H+R+HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 61.4 bits (150), Expect = 5e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F S L+ H+RI HT +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRI-----HTGEKPSGPS 44
Score = 54.4 bits (132), Expect = 2e-10
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F SY++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
Score = 50.2 bits (121), Expect = 5e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F S L+ H+ R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQ----------------------------RI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 8e-09
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F YL H R HTGE+P
Sbjct: 5 SSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 16/78 (20%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F YL
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKVFRHNSYL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---SRHQRIHTGEKPSGP 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F S + H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F +SYL RHQ
Sbjct: 15 CNECGKVFRHNSYLSRHQ 32
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.3 bits (163), Expect = 8e-15
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K FTQ S L H+ +HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 62.1 bits (152), Expect = 3e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F+Q S L H+ I HT +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGI-----HTGEKPSGPS 44
Score = 53.6 bits (130), Expect = 3e-10
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F S++ HR H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 4e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+Q S L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRG----------------------------I 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 3e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F + +L H HTGE+P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F++ +L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKVFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 ---VRHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.006
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT S H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 29.0 bits (66), Expect = 0.17
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F ++S+L+RH+
Sbjct: 15 CNECGKVFTQNSHLVRHR 32
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 66.4 bits (163), Expect = 8e-15
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GE+P++C C K F KS L H+R H G +
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 59.9 bits (146), Expect = 2e-12
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ +GE+PY+C C K F KS L H+R H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERT-----HAGVSGPSS 43
Score = 52.1 bits (126), Expect = 1e-09
Identities = 16/69 (23%), Positives = 21/69 (30%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GE+P++C C K F KS L VH RT
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKS----------------------------LLIVHERT 34
Query: 88 HTGERPYQC 96
H G
Sbjct: 35 HAGVSGPSS 43
Score = 51.0 bits (123), Expect = 3e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
+ +GE+PY C+ C K F KS + H +H G
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 50.2 bits (121), Expect = 5e-09
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C +F K L +H RTH G
Sbjct: 7 GSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 39.1 bits (92), Expect = 4e-05
Identities = 15/78 (19%), Positives = 18/78 (23%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ + +KPY C C AF K L
Sbjct: 2 SSGSSG-----SGEKPYECNECGKAFIWKSLL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
VH RTH G
Sbjct: 29 ---IVHERTHAGVSGPSS 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F KS VH RTH
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 30.2 bits (69), Expect = 0.076
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ + + CN CG++F+ S LI H+
Sbjct: 1 GSSGSSG-SGEKPYECNECGKAFIWKSLLIVHE 32
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 66.0 bits (162), Expect = 8e-15
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE P++C C K F++K L +H++ H+G+ +
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 59.4 bits (145), Expect = 2e-12
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+ TGE PY+C C K FS+K L +H++ H+
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKT-----HSGQSGPSS 43
Score = 52.5 bits (127), Expect = 7e-10
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G PY C C F RK L H +TH+G+
Sbjct: 7 GTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 51.7 bits (125), Expect = 1e-09
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE P++C C K FS+K L H +T
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKD----------------------------QLVSHQKT 34
Query: 88 HTGERPYQC 96
H+G+
Sbjct: 35 HSGQSGPSS 43
Score = 49.4 bits (119), Expect = 9e-09
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
+ TGE PY C C K F+ K + SH+ +H G
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 39.4 bits (93), Expect = 4e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+ P+ C C F+ K Q H +TH
Sbjct: 2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTH 35
Score = 38.6 bits (91), Expect = 7e-05
Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
T + PY C C FSRK L H +TH
Sbjct: 7 GTGENPYECCECGKVFSRKDQL-------------------------------VSHQKTH 35
Query: 181 TGERPFQC 188
+G+
Sbjct: 36 SGQSGPSS 43
Score = 30.2 bits (69), Expect = 0.066
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG+ F R L+ HQ
Sbjct: 15 CCECGKVFSRKDQLVSHQ 32
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 66.0 bits (162), Expect = 1e-14
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+ ++C C K F++ S L+ H+++HTGE+P
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 62.2 bits (152), Expect = 2e-13
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+ Y+C C K FS+ S L+ H++I HT +KP +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKI-----HTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+ Y C+ C K F+ S ++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 4e-09
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+ ++C C K FS+ S L H +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNS----------------------------QLSQHQKI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 49.8 bits (120), Expect = 8e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G K Y C C F R L H + HTGE+P
Sbjct: 5 SSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 36.7 bits (86), Expect = 3e-04
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +K Y C C FSR L
Sbjct: 2 SSGSSG-----TGEKRYKCNECGKVFSRNSQL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H + HTGE+P
Sbjct: 29 ---SQHQKIHTGEKPSGP 43
Score = 32.5 bits (75), Expect = 0.009
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+K + C C F+ SQ + H + H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 29.8 bits (68), Expect = 0.11
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + CN CG+ F R+S L +HQ
Sbjct: 1 GSSGSSG-TGEKRYKCNECGKVFSRNSQLSQHQ 32
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-14
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TG +P+QC C K F+Q S L H+RVHTGE+P
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 62.6 bits (153), Expect = 2e-13
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TG +PYQC C K FSQ S L H+R+ HT +KP +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRV-----HTGEKPSGPS 44
Score = 52.5 bits (127), Expect = 7e-10
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TG +PY C+ C K F+ S + H+ H G+KP G +S
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS 45
Score = 52.2 bits (126), Expect = 1e-09
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 27 IHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMR 86
+ TG +P+QC C K FSQ S L H R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTS----------------------------KLARHQR 33
Query: 87 THTGERPYQCE 97
HTGE+P
Sbjct: 34 VHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 2e-08
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + L H R HTGE+P
Sbjct: 5 SSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 2e-04
Identities = 17/78 (21%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KPY C C AFS+ L
Sbjct: 2 SSGSSG-----TGGKPYQCNECGKAFSQTSKL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---ARHQRVHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G KP+ C C F+ S+ A H R H
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 28.3 bits (64), Expect = 0.38
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG++F + S L RHQ
Sbjct: 15 CNECGKAFSQTSKLARHQ 32
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.1 bits (162), Expect = 1e-14
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F SS H+R+HTG+RP
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 61.8 bits (151), Expect = 4e-13
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F SS H+R+ HT +P +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRL-----HTGQRPSGPS 44
Score = 53.4 bits (129), Expect = 4e-10
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F S T H+ H G +P G +S
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
Score = 50.7 bits (122), Expect = 4e-09
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C+ C K F S+ H+ R
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ----------------------------RL 34
Query: 88 HTGERPYQCE 97
HTG+RP
Sbjct: 35 HTGQRPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F H R HTG+RP
Sbjct: 5 SSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 37.6 bits (88), Expect = 2e-04
Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AF +S
Sbjct: 2 SSGSSG-----TGEKPYKCMECGKAFGDN----------------------------SSC 28
Query: 171 FSHQVHMRTHTGERPFQC 188
HQ R HTG+RP
Sbjct: 29 TQHQ---RLHTGQRPSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F S H R H
Sbjct: 2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 29.1 bits (66), Expect = 0.18
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG++F +S +HQ
Sbjct: 1 GSSGSSG-TGEKPYKCMECGKAFGDNSSCTQHQ 32
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-14
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K FTQ S L H+ +HTGE+P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 61.7 bits (151), Expect = 3e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F+Q S L H+ I HT +KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGI-----HTGEKPSGPS 44
Score = 53.3 bits (129), Expect = 4e-10
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F S++ HR H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45
Score = 50.6 bits (122), Expect = 4e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+Q S L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRG----------------------------I 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F + +L H HTGE+P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F++ +L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKVFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 ---ARHRGIHTGEKPSGP 43
Score = 33.2 bits (77), Expect = 0.006
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT S A H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 29.0 bits (66), Expect = 0.20
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F ++S+L RH+
Sbjct: 15 CNECGKVFTQNSHLARHR 32
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 66.0 bits (162), Expect = 1e-14
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F+Q + L H+RVHTGE+P
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 61.4 bits (150), Expect = 5e-13
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C+ C K FSQ + L H+R+ HT +KP +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRV-----HTGEKPSGPS 44
Score = 51.7 bits (125), Expect = 1e-09
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F+ +++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45
Score = 50.2 bits (121), Expect = 6e-09
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K FSQ + +L H R
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTT----------------------------HLIQHQRV 34
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 35 HTGEKPSGP 43
Score = 49.4 bits (119), Expect = 1e-08
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C +F + +L H R HTGE+P
Sbjct: 5 SSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 36.3 bits (85), Expect = 4e-04
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C AFS+ +L
Sbjct: 2 SSGSSG-----TGEKPYECKECGKAFSQTTHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTGE+P
Sbjct: 29 ---IQHQRVHTGEKPSGP 43
Score = 32.9 bits (76), Expect = 0.007
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F+ + H R H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 30.6 bits (70), Expect = 0.055
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG++F + ++LI+HQ
Sbjct: 1 GSSGSSG-TGEKPYECKECGKAFSQTTHLIQHQ 32
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 1e-14
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K F + S L H+ +HTGE+P
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 61.7 bits (151), Expect = 4e-13
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F + S L H+ I HT +KP +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLI-----HTGEKPSGPS 44
Score = 52.9 bits (128), Expect = 6e-10
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C C K F S++ H+ H G+KP G +S
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
Score = 50.2 bits (121), Expect = 5e-09
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F + S +L H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNS----------------------------HLARHQLI 34
Query: 88 HTGERPYQCE 97
HTGE+P
Sbjct: 35 HTGEKPSGPS 44
Score = 48.6 bits (117), Expect = 2e-08
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F R +L H HTGE+P
Sbjct: 5 SSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F R +L
Sbjct: 2 SSGSSG-----TGEKPYKCHECGKVFRRNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 ---ARHQLIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C F S A H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 29.8 bits (68), Expect = 0.086
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C+ CG+ F R+S+L RHQ
Sbjct: 1 GSSGSSG-TGEKPYKCHECGKVFRRNSHLARHQ 32
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 67.9 bits (165), Expect = 1e-14
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRM-----HIPYIQYYCDACDATFTTKQ 79
+++ TG F+C C + L H + + + K+
Sbjct: 7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 80 NLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+L ++ +C C F L+ H I H + +G
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH---MIKTKHYQKVSGPSSG 115
Score = 66.3 bits (161), Expect = 4e-14
Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 33/138 (23%)
Query: 79 QNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSR 138
+ +++ TG ++C+ C+ + L H +Y + + + R
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPR 64
Query: 139 KQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQK 198
K+ S ++ +C C F
Sbjct: 65 KR-------------------------------SLLEMEGKEDAQKVLKCMYCGHSFESL 93
Query: 199 SSLNTH--KRVHTGERPY 214
L+ H K H +
Sbjct: 94 QDLSVHMIKTKHYQKVSG 111
Score = 61.7 bits (149), Expect = 2e-12
Identities = 19/98 (19%), Positives = 28/98 (28%), Gaps = 7/98 (7%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHR 233
+++ TG F+C CS + L H TG D + R
Sbjct: 8 KLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKR 66
Query: 234 ------WSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHH 265
K C C +F S +VH+
Sbjct: 67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 58.6 bits (141), Expect = 3e-11
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMR-----THTGERPFQCVVCLKRFSQKSALNT 55
+ +G + C C A++ L +HM +K +L
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Query: 56 HKRMHIPYIQYYCDACDATFTTKQNLEVHM--RTHTGERPYQ 95
+ C C +F + Q+L VHM H +
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP 112
Score = 55.9 bits (134), Expect = 3e-10
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 48 SQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKS 107
S S+ + + ++ C C A + T L VHM TG + ++
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRW 60
Query: 108 SLNTHKRIHIN-YLHTEDKPYHCTGCDAAFSRKQYLEV 144
S + + K C C +F Q L V
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSV 98
Score = 55.9 bits (134), Expect = 3e-10
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 196 TQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS--HVGDKPFGCTSCHLTFTS 253
+ SS + + TG + C C + +T H H D + + S
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWS 61
Query: 254 KSQFAVHLRTH--HTVGANHVCNVCGRSFVRDSYLIRHQNK 292
K + L C CG SF L H K
Sbjct: 62 KPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 1e-14
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ +GERP+ C C K F + S L H + H E+
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 61.4 bits (150), Expect = 6e-13
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GERPY C C K F + S L H + H +K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKR-----HFREKSSGPS 44
Score = 55.2 bits (134), Expect = 8e-11
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GERPY C+ C K F S++ H H +K G +S
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45
Score = 52.5 bits (127), Expect = 8e-10
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG +PY C C +F R +L H++ H E+
Sbjct: 7 GSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 50.2 bits (121), Expect = 6e-09
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 28/69 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ +GERP+ C C K F + S L H +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHL----------------------------KR 34
Query: 88 HTGERPYQC 96
H E+
Sbjct: 35 HFREKSSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 36/78 (46%)
Query: 112 HKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLF 171
+ ++PY C C F R +L
Sbjct: 3 SGSSG-----SGERPYGCNECGKNFGRHSHL----------------------------- 28
Query: 172 SHQVHMRTHTGERPFQCA 189
H++ H E+ +
Sbjct: 29 --IEHLKRHFREKSSGPS 44
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G++P+GC C F S HL+ H
Sbjct: 2 SSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 30.9 bits (71), Expect = 0.040
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG++F R S+LI H
Sbjct: 15 CNECGKNFGRHSHLIEHL 32
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 65.8 bits (161), Expect = 1e-14
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 176 HMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACD 217
+ TGE+PF C C RF++ L+ H+R H+G +P
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 57.3 bits (139), Expect = 1e-11
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 84 HMRTHTGERPYQC--EVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTG 131
+ TGE+P+ C C RFS+ L+ H+R H+ KP +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRS-----HSGVKPSGPSS 47
Score = 53.8 bits (130), Expect = 3e-10
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 203 THKRVHTGERPYACD--ICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+P+AC C RF+ ++ HR SH G KP G +S
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 50.0 bits (120), Expect = 7e-09
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KP+ CT C F R L H R+H+G +P
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGP 45
Score = 49.6 bits (119), Expect = 1e-08
Identities = 16/72 (22%), Positives = 22/72 (30%), Gaps = 30/72 (41%)
Query: 28 HMRTHTGERPFQCVV--CLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHM 85
+ TGE+PF C C RFS+ L H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSD----------------------------ELSRHR 34
Query: 86 RTHTGERPYQCE 97
R+H+G +P
Sbjct: 35 RSHSGVKPSGPS 46
Score = 37.7 bits (88), Expect = 2e-04
Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 38/81 (46%)
Query: 111 THKRIHINYLHTEDKPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLT 168
+ T +KP+ CT GC FSR L
Sbjct: 2 SSGSSG-----TGEKPFACTWPGCGWRFSRSDEL-------------------------- 30
Query: 169 SLFSHQVHMRTHTGERPFQCA 189
H R+H+G +P +
Sbjct: 31 -----SRHRRSHSGVKPSGPS 46
Score = 31.9 bits (73), Expect = 0.022
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 231 SHRWSHVGDKPFGCT--SCHLTFTSKSQFAVHLRTH 264
S S G+KPF CT C F+ + + H R+H
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 2e-14
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ TGE+P++C C K FTQ S L H+RVHTG +P
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 61.0 bits (149), Expect = 7e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TGE+PY+C C K F+Q S L H+R+ HT KP +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRV-----HTGGKPSGPS 44
Score = 52.9 bits (128), Expect = 5e-10
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+ TGE+PY C+ C K F S++ HR H G KP G +S
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45
Score = 50.2 bits (121), Expect = 6e-09
Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 28/70 (40%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TGE+P++C C K F+Q S L H+R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRR----------------------------V 34
Query: 88 HTGERPYQCE 97
HTG +P
Sbjct: 35 HTGGKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+G KPY C C F + +L H R HTG +P
Sbjct: 5 SSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 37.5 bits (88), Expect = 2e-04
Identities = 14/78 (17%), Positives = 20/78 (25%), Gaps = 36/78 (46%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T +KPY C C F++ +L
Sbjct: 2 SSGSSG-----TGEKPYKCNECGKVFTQNSHL---------------------------- 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H R HTG +P
Sbjct: 29 ---ARHRRVHTGGKPSGP 43
Score = 33.6 bits (78), Expect = 0.004
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+KP+ C C FT S A H R H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 28.6 bits (65), Expect = 0.25
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
CN CG+ F ++S+L RH+
Sbjct: 15 CNECGKVFTQNSHLARHR 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 65.2 bits (160), Expect = 2e-14
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+GE P++C+ C K F +K L +H+R H GE +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 58.7 bits (143), Expect = 4e-12
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHC 129
+GE PY+C C K F++K L +H+R H +
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRT-----HAGESGPSS 41
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG PY C+ C +F RK L H RTH GE
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 51.0 bits (123), Expect = 2e-09
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 28/67 (41%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
+GE P++C C K F++K L H RTH
Sbjct: 3 SGSSGENPYECSECGKAFNRKD----------------------------QLISHQRTHA 34
Query: 90 GERPYQC 96
GE
Sbjct: 35 GESGPSS 41
Score = 46.7 bits (112), Expect = 7e-08
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 205 KRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
+GE PY C C K F K + SH+ +H G+
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 39.0 bits (92), Expect = 5e-05
Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ + PY C+ C AF+RK L SHQ RTH
Sbjct: 5 SSGENPYECSECGKAFNRK----------------------------DQLISHQ---RTH 33
Query: 181 TGERPFQC 188
GE
Sbjct: 34 AGESGPSS 41
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+ P+ C+ C F K Q H RTH
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 29.4 bits (67), Expect = 0.11
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ CG++F R LI HQ
Sbjct: 13 CSECGKAFNRKDQLISHQ 30
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 64.5 bits (158), Expect = 3e-14
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+GE+PF C+ C K F+ KS L H++ H E+P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 57.9 bits (141), Expect = 8e-12
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KP+ C+ C+ +F K YL +H +TH E+P
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 57.9 bits (141), Expect = 9e-12
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+GE+P+ C C K FS KS L H++ H E+KP +
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQT-----HAEEKPSGPS 42
Score = 54.1 bits (131), Expect = 2e-10
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 205 KRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GE+P+ C C+K F+ KSY+ H+ +H +KP G +S
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43
Score = 51.4 bits (124), Expect = 2e-09
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 28/67 (41%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
+GE+PF C C K FS KS L VH +TH
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKS----------------------------YLLVHQQTHA 34
Query: 90 GERPYQC 96
E+P
Sbjct: 35 EEKPSGP 41
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ +KP+ C+ C+ AFS K YL VH +TH
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYL-------------------------------LVHQQTH 33
Query: 181 TGERPFQC 188
E+P
Sbjct: 34 AEEKPSGP 41
Score = 38.7 bits (91), Expect = 7e-05
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KPFGC+ C F+SKS VH +TH
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 30.2 bits (69), Expect = 0.061
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ C ++F SYL+ HQ
Sbjct: 13 CSCCEKAFSSKSYLLVHQ 30
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 63.8 bits (156), Expect = 5e-14
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+ GE P+ C C K FTQ+ SL H+R + P +
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 56.9 bits (138), Expect = 2e-11
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
+ GE PY C C K F+Q+ SL H+R ++ P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRS-----CSQSGPS 40
Score = 51.1 bits (123), Expect = 2e-09
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPF 38
G PY C C SF ++ L +H R+ + P
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 48.0 bits (115), Expect = 3e-08
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 28/67 (41%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ GE P+ C C K F+Q+ +L VH R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRG----------------------------SLAVHQRS 33
Query: 88 HTGERPY 94
+ P
Sbjct: 34 CSQSGPS 40
Score = 43.8 bits (104), Expect = 1e-06
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
GE PY C C K F + + H+ S P
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 37.6 bits (88), Expect = 2e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 232 HRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S G+ P+ C C +FT + AVH R+
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSC 34
Score = 33.4 bits (77), Expect = 0.005
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 31/66 (46%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ PY C C +F+++ L VH R+
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSL-------------------------------AVHQRSC 34
Query: 181 TGERPF 186
+ P
Sbjct: 35 SQSGPS 40
Score = 26.5 bits (59), Expect = 1.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
++C CG+SF + L HQ
Sbjct: 12 YLCGQCGKSFTQRGSLAVHQ 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 63.4 bits (155), Expect = 1e-13
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKR-VHTGERPYAC 216
+ TG++P++C C K F Q +SL H R HTGE+P
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 61.4 bits (150), Expect = 5e-13
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ TG++PY+C C K F Q +SL H R Y HT +KP +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWR----YYHTGEKPSGPS 45
Score = 53.7 bits (130), Expect = 3e-10
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSH-RWSHVGDKPFGCTS 246
+ TG++PY C C K F + + H R+ H G+KP G +S
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 53.3 bits (129), Expect = 4e-10
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 27/69 (39%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ TG++P++C+ C K F Q ++L H R
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWR---------------------------YY 35
Query: 88 HTGERPYQC 96
HTGE+P
Sbjct: 36 HTGEKPSGP 44
Score = 46.4 bits (111), Expect = 1e-07
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMR-THTGERPFQC 40
+G KPY C C +F + L H R HTGE+P
Sbjct: 5 SSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 35.6 bits (83), Expect = 8e-04
Identities = 17/78 (21%), Positives = 20/78 (25%), Gaps = 35/78 (44%)
Query: 111 THKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSL 170
+ T KPY C C AF + TSL
Sbjct: 2 SSGSSG-----TGKKPYECIECGKAFIQN----------------------------TSL 28
Query: 171 FSHQVHMRTHTGERPFQC 188
H HTGE+P
Sbjct: 29 IRHW--RYYHTGEKPSGP 44
Score = 34.5 bits (80), Expect = 0.002
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
S S G KP+ C C F + H R +HT
Sbjct: 2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHT 37
Score = 30.6 bits (70), Expect = 0.050
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T + C CG++F++++ LIRH
Sbjct: 1 GSSGSSG-TGKKPYECIECGKAFIQNTSLIRHW 32
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 62.6 bits (153), Expect = 1e-13
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
+G+R ++C C K F QK SL H+R+HTG P +
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 56.4 bits (137), Expect = 3e-11
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPY 127
+G+R Y+C+ C K F QK SL H+RI HT P
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERI-----HTGSGPS 39
Score = 46.8 bits (112), Expect = 9e-08
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPF 38
SG + Y C C SF +K L +H R HTG P
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 45.3 bits (108), Expect = 3e-07
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+G+R ++C C K F QK +L H+R+H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 42.2 bits (100), Expect = 3e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 205 KRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPF 242
+G+R Y C C K F K +T H H G P
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 32.5 bits (75), Expect = 0.011
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 31/66 (46%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ + Y C C +F +K SL H+ R H
Sbjct: 5 SSGQRVYECQECGKSFRQK----------------------------GSLTLHE---RIH 33
Query: 181 TGERPF 186
TG P
Sbjct: 34 TGSGPS 39
Score = 31.8 bits (73), Expect = 0.015
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G + + C C +F K +H R H
Sbjct: 4 GSSGQRVYECQECGKSFRQKGSLTLHERIH 33
Score = 27.9 bits (63), Expect = 0.39
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C CG+SF + L H+
Sbjct: 13 CQECGKSFRQKGSLTLHE 30
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 62.2 bits (152), Expect = 3e-13
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD 217
+ +GE+ C C K F S+L H+RVH GE+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 55.3 bits (134), Expect = 7e-11
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT 130
+ +GE+ + C+ C K F S+L H+R+ H +K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRV-----HMGEKCSGPS 44
Score = 51.8 bits (125), Expect = 1e-09
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTS 246
+GE+ + CD C K F S + H+ H+G+K G +S
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45
Score = 51.4 bits (124), Expect = 2e-09
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG K + C C +FC L IH R H GE+
Sbjct: 5 SSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 47.2 bits (113), Expect = 6e-08
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ +GE+ C C K F SAL H+R+H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 35.6 bits (83), Expect = 8e-04
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+K C C F S +H R H
Sbjct: 2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 30.6 bits (70), Expect = 0.057
Identities = 10/69 (14%), Positives = 16/69 (23%), Gaps = 31/69 (44%)
Query: 120 LHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRT 179
+ +K + C C F L ++H R
Sbjct: 6 SGSGEKSHTCDECGKNFCYISAL-------------------------------RIHQRV 34
Query: 180 HTGERPFQC 188
H GE+
Sbjct: 35 HMGEKCSGP 43
Score = 28.3 bits (64), Expect = 0.32
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
H C+ CG++F S L HQ
Sbjct: 13 HTCDECGKNFCYISALRIHQ 32
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 59.3 bits (144), Expect = 6e-12
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 174 QVHMRTHTGERPFQCAV--CSKRFTQKSSLNTHKRVHTGERPYACDI--CDKRFAVKSYV 229
+ R C+ C K + + S L H R HTGE+P++C C++RFA +
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Query: 230 TSHRWSH 236
+ HR +H
Sbjct: 66 SRHRRTH 72
Score = 59.3 bits (144), Expect = 6e-12
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 50 KSALNTHKRMHIPYIQYYCD--ACDATFTTKQNLEVHMRTHTGERPYQCEV--CNKRFSQ 105
S + + + C C T+ +L+ H RTHTGE+P+ C C +RF++
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 106 KSSLNTHKRIH 116
L+ H+R H
Sbjct: 62 SDELSRHRRTH 72
Score = 57.0 bits (138), Expect = 3e-11
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 4 HSGNKPYHCT--ACDASFCRKPYLEIHMRTHTGERPFQCVV--CLKRFSQKSALNTHKRM 59
S + + C+ C ++ + +L+ H RTHTGE+PF C C +RF++ L+ H+R
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 60 H 60
H
Sbjct: 72 H 72
Score = 52.0 bits (125), Expect = 2e-09
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 198 KSSLNTHKRVHTGERPYACDI--CDKRFAVKSYVTSHRWSHVGDKPFGCT--SCHLTFTS 253
S + + + R + C C K + S++ +H +H G+KPF C+ C F
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 254 KSQFAVHLRTH 264
+ + H RTH
Sbjct: 62 SDELSRHRRTH 72
Score = 49.3 bits (118), Expect = 2e-08
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 81 LEVHMRTHTGERPYQCEV--CNKRFSQKSSLNTHKRIHINYLHTEDKPYHCT--GCDAAF 136
+ R + C C K + + S L H R HT +KP+ C+ GC+ F
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-----HTGEKPFSCSWKGCERRF 59
Query: 137 SR 138
+R
Sbjct: 60 AR 61
Score = 30.4 bits (69), Expect = 0.10
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1 MKLHSGNKPYHCT--ACDASFCRKPYLEIHMRTH 32
+ H+G KP+ C+ C+ F R L H RTH
Sbjct: 39 TRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 57.2 bits (139), Expect = 1e-11
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+ T + + C C K FT+ L H+++HT + +
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 52.2 bits (126), Expect = 1e-09
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+ T + Y C C K F++ L H++IH
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 44.9 bits (107), Expect = 4e-07
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ T + + C C K F++ L H+++H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 43.0 bits (102), Expect = 2e-06
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
+ +K Y+C C +F R +L H + HT +
Sbjct: 5 SSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 42.6 bits (101), Expect = 3e-06
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
T + Y C+ C K F ++T H+ H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 30.6 bits (70), Expect = 0.053
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S K + C C FT H + H
Sbjct: 2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIH 35
Score = 30.2 bits (69), Expect = 0.069
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 112 HKRIHINYLHTEDKPYHCTGCDAAFSRKQYL 142
T+ K Y+C C AF+R +L
Sbjct: 3 SGSSG-----TDSKSYNCNECGKAFTRIFHL 28
Score = 29.9 bits (68), Expect = 0.098
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 258 AVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
+ T ++ CN CG++F R +L RHQ
Sbjct: 1 GSSGSSG-TDSKSYNCNECGKAFTRIFHLTRHQ 32
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 58.8 bits (142), Expect = 1e-11
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 9/75 (12%)
Query: 31 THTGERPFQCVVCLKRFSQKSALNTH-KRMHI---PYIQYYC-----DACDATFTTKQNL 81
+ C + FS L TH H+ + C +F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 82 EVHMRTHTGERPYQC 96
H+R HTGE+
Sbjct: 79 VNHIRVHTGEKSGPS 93
Score = 53.4 bits (128), Expect = 1e-09
Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 9/76 (11%)
Query: 179 THTGERPFQCAVCSKRFTQKSSLNTH-KRVHTGERPYA--------CDICDKRFAVKSYV 229
+ C + F+ L TH H G C K F K +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 230 TSHRWSHVGDKPFGCT 245
+H H G+K +
Sbjct: 79 VNHIRVHTGEKSGPSS 94
Score = 50.4 bits (120), Expect = 2e-08
Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 59 MHIPYIQYYCDACDATFTTKQNLEVHM-RTHTGERPYQ--------CEVCNKRFSQKSSL 109
+ + +CD TF+T L H+ H G C K F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 110 NTHKRIHINYLHTEDKPYHCTG 131
H R+ HT +K +G
Sbjct: 79 VNHIRV-----HTGEKSGPSSG 95
Score = 50.0 bits (119), Expect = 2e-08
Identities = 18/109 (16%), Positives = 28/109 (25%), Gaps = 39/109 (35%)
Query: 87 THTGERPYQCEVCNKRFSQKSSLNTH-KRIHINYLHTEDKPY-----HCTGCDAAFSRKQ 140
+ + C++ FS L TH H+ E + C +F K
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG--GPEQNNHVCYWEECPREGKSFKAKY 76
Query: 141 YLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCA 189
L H+R HTGE+ +
Sbjct: 77 KL-------------------------------VNHIRVHTGEKSGPSS 94
Score = 47.3 bits (112), Expect = 2e-07
Identities = 22/105 (20%), Positives = 24/105 (22%), Gaps = 38/105 (36%)
Query: 120 LHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRT 179
+ CD FS L V H T
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHEL-VTHVT-----------------------------ME 48
Query: 180 HTGERPFQ--------CAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
H G C K F K L H RVHTGE+
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 43.0 bits (101), Expect = 6e-06
Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 233 RWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHV--------CNVCGRSFVRDS 284
+W SC TF++ + H+ H G C G+SF
Sbjct: 17 KWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 285 YLIRHQ 290
L+ H
Sbjct: 77 KLVNHI 82
Score = 40.7 bits (95), Expect = 4e-05
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGERPFQC 40
C SF K L H+R HTGE+
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 56.9 bits (138), Expect = 2e-11
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYAC 216
+GE+P+ CA C + F+ + L H+++HT + +
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 50.0 bits (120), Expect = 6e-09
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+GE+PY C C + FS + L H+++H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 45.0 bits (107), Expect = 4e-07
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 RTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C C + FS + L H++MH
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 43.9 bits (104), Expect = 9e-07
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQC 40
SG KPY C C +F L H + HT +
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 40.0 bits (94), Expect = 2e-05
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 205 KRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGC 244
+GE+PY+C C + F+ + + H+ H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 33.1 bits (76), Expect = 0.007
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G+KP+ C C TF+ ++ H + H
Sbjct: 4 GSSGEKPYSCAECKETFSDNNRLVQHQKMH 33
Score = 29.2 bits (66), Expect = 0.13
Identities = 11/68 (16%), Positives = 15/68 (22%), Gaps = 31/68 (45%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
+ +KPY C C FS L H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRL-------------------------------VQHQKMH 33
Query: 181 TGERPFQC 188
T +
Sbjct: 34 TVKSGPSS 41
Score = 28.4 bits (64), Expect = 0.27
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
+ C C +F ++ L++HQ
Sbjct: 11 YSCAECKETFSDNNRLVQHQ 30
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 55.1 bits (132), Expect = 1e-10
Identities = 20/55 (36%), Positives = 24/55 (43%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
+ C C R + S L H R HT RPY C C+ F K +T H S K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 52.4 bits (125), Expect = 1e-09
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+Y C+ C L+ H+RTHT RPY C CN F K +L H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 47.8 bits (113), Expect = 5e-08
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 10 YHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
Y C C + L+ H+RTHT RP+ C C F K L H +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 47.4 bits (112), Expect = 8e-08
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 174 QVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+ H+RTHT RP+ C C+ F K +L H + +
Sbjct: 18 KKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 46.6 bits (110), Expect = 2e-07
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGER 92
+ C C R + S L H R H Y+C C+ +F TK NL HM++ +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 44.7 bits (105), Expect = 8e-07
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 214 YACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
Y C+ C R S + H +H +P+ CT C+ +F +K H+++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 40.9 bits (95), Expect = 2e-05
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTT 148
Y CE C R + S L H R H T+ +PYHCT C+ +F K L + +
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTH-----TDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 40.1 bits (93), Expect = 3e-05
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
++ H+ +PYHCT C+ SF K L HM++ +
Sbjct: 21 IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 54.3 bits (130), Expect = 3e-10
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWS 235
+ H G+R +C+ C F ++S+ + + C+ C K ++ + +
Sbjct: 9 RQKIHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNKDEGN 61
Query: 236 HVGDKPFGCTS 246
G K G +S
Sbjct: 62 ESGKKTSGPSS 72
Score = 50.8 bits (121), Expect = 7e-09
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVH 84
+ H G+R +C C F ++S L+ K C+ C + L
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKT-------PMCEKCRKDSCQEAALNKD 58
Query: 85 MRTHTGERPY 94
+G++
Sbjct: 59 EGNESGKKTS 68
Score = 48.5 bits (115), Expect = 4e-08
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 7/66 (10%)
Query: 51 SALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLN 110
+ +++H+ C C F T + + CE C K Q+++LN
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALN 56
Query: 111 THKRIH 116
+
Sbjct: 57 KDEGNE 62
Score = 48.5 bits (115), Expect = 4e-08
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
K+H G++ C+ C F I T + + C C K Q++ALN +
Sbjct: 10 QKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNE 62
Score = 48.5 bits (115), Expect = 5e-08
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 43/109 (39%)
Query: 107 SSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKF 166
S ++IH D+ C+ C F R+
Sbjct: 4 GSSGKRQKIH-----LGDRSQKCSKCGIIFIRRS-------------------------- 32
Query: 167 LTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYA 215
T + + C C K Q+++LN + +G++
Sbjct: 33 ------------TLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
Score = 47.0 bits (111), Expect = 1e-07
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 199 SSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFA 258
S +++H G+R C C F R + K C C ++
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIF-------IRRSTLSRRKTPMCEKCRKDSCQEAALN 56
Query: 259 VHLRTH 264
Sbjct: 57 KDEGNE 62
Score = 37.3 bits (86), Expect = 4e-04
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 227 SYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYL 286
+ H+GD+ C+ C + F +S + +C C + +++ L
Sbjct: 4 GSSGKRQKIHLGDRSQKCSKCGIIFIRRS--------TLSRRKTPMCEKCRKDSCQEAAL 55
Query: 287 IRHQ 290
+ +
Sbjct: 56 NKDE 59
Score = 35.4 bits (81), Expect = 0.002
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPF 38
S K C C C++ L +G++
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 51.0 bits (122), Expect = 2e-09
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
+ GE PF+C+ C + FTQ++ L H+R H +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 46.8 bits (111), Expect = 8e-08
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+ GE P++C C++ F+Q++ L H+R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 43.7 bits (103), Expect = 1e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERP 37
+G P+ C+ CD F ++ YL H RTH +
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 42.9 bits (101), Expect = 2e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ GE PF+C C + F+Q++ L H+R H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 42.2 bits (99), Expect = 4e-06
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 203 THKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
+ GE P+ C CD+ F ++Y+ H +H
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 36.0 bits (83), Expect = 5e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S S G+ PF C+ C FT ++ H RTH
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
Score = 30.6 bits (69), Expect = 0.058
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYL 142
+ P+ C+ CD F+++ YL
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYL 28
Score = 28.7 bits (64), Expect = 0.27
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 273 CNVCGRSFVRDSYLIRHQ 290
C+ C R F + +YL++H+
Sbjct: 15 CSKCDRVFTQRNYLVQHE 32
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 50.0 bits (120), Expect = 5e-09
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 84 HMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHI 117
R TG +P+QC C++ FS+ L H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 47.7 bits (114), Expect = 4e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVH 208
R TG +PFQC C + F++ L H++ H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 47.7 bits (114), Expect = 4e-08
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHI 61
R TG +PFQC C + FS+ L H++ H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 39.2 bits (92), Expect = 3e-05
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 204 HKRVHTGERPYACDICDKRFAVKSYVTSHRWSHV 237
R TG +P+ C CD+ F+ ++ HR H+
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM 35
Score = 38.1 bits (89), Expect = 9e-05
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRTH 32
+ +G KP+ C CD SF R +L +H + H
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.9 bits (73), Expect = 0.013
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
G KPF C C +F+ A+H + H V
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV 37
Score = 29.2 bits (66), Expect = 0.11
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYL 142
T KP+ C CD +FSR +L
Sbjct: 6 STGIKPFQCPDCDRSFSRSDHL 27
Score = 24.6 bits (54), Expect = 5.9
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 260 HLRTHHTVGANHVCNVCGRSFVRDSYLIRHQ 290
R T C C RSF R +L H+
Sbjct: 2 STRGS-TGIKPFQCPDCDRSFSRSDHLALHR 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 49.9 bits (119), Expect = 7e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 178 RTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDIC 219
+ + C +C K F LN HK H+GE+PY+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 45.3 bits (107), Expect = 3e-07
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVC 43
K C C F +L H +H+GE+P+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 42.6 bits (100), Expect = 3e-06
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCN 100
Q C+ C F +L H +H+GE+PY +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 42.2 bits (99), Expect = 4e-06
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 206 RVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSC 247
+ AC+IC K F ++ H+ SH G+KP+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 42.2 bits (99), Expect = 4e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 86 RTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGC 132
+ + CE+C K F LN HK H+ +KPY
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-----HSGEKPYSSGPS 46
Score = 31.8 bits (72), Expect = 0.023
Identities = 11/72 (15%), Positives = 16/72 (22%), Gaps = 31/72 (43%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTH 180
K C C F +L H +H
Sbjct: 7 GRTRKQVACEICGKIFRDVYHL-------------------------------NRHKLSH 35
Query: 181 TGERPFQCAVCS 192
+GE+P+ S
Sbjct: 36 SGEKPYSSGPSS 47
Score = 28.0 bits (62), Expect = 0.46
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 270 NHVCNVCGRSFVRDSYLIRHQ 290
C +CG+ F +L RH+
Sbjct: 12 QVACEICGKIFRDVYHLNRHK 32
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 51.9 bits (123), Expect = 1e-08
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 8/116 (6%)
Query: 3 LHSGNKPYHC--TACDASFCRKPYLEIHMRTHTGERPFQCVV----CLKRFSQKSALNTH 56
+ SG+K Y + H T +R + +V + +S+
Sbjct: 6 VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYR 65
Query: 57 KRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTH 112
Q+ C C F++ +L+ H+R E C VC K F+ S H
Sbjct: 66 LLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 41.5 bits (96), Expect = 4e-05
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 172 SHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
S+ + F C +C F+ SL H R E C +C K F
Sbjct: 61 SYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALD 118
Query: 232 H 232
H
Sbjct: 119 H 119
Score = 41.5 bits (96), Expect = 5e-05
Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 15/121 (12%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACD----ICDKRFAVKSYVTS 231
++ H G T + H+ +R I + + +S
Sbjct: 13 YLSNHKG--------IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLY 64
Query: 232 HRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQN 291
+ F C C + F+S H+R VC VC + F + H
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE---HTKVCPVCKKEFTSTDSALDHVC 121
Query: 292 K 292
K
Sbjct: 122 K 122
Score = 39.9 bits (92), Expect = 1e-04
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 6/98 (6%)
Query: 174 QVHMRTHTGERPFQC----AVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYV 229
+ H T +R + + + + +SS + C +C F+ +
Sbjct: 31 RYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSL 90
Query: 230 TSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTV 267
H + C C FTS H+ H +
Sbjct: 91 KQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 33.0 bits (74), Expect = 0.039
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT 87
+ F C +CL FS +L H R C C FT+ + H+
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH--TKVCPVCKKEFTSTDSALDHVCK 122
Query: 88 H 88
Sbjct: 123 K 123
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 48.4 bits (114), Expect = 1e-07
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 3/85 (3%)
Query: 182 GERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSHVGDKP 241
+ +QC +C+ + + +H+R+ C C RF H S K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE-SKCEYKK 69
Query: 242 FGCTSCHLTFTSKSQFAVHLRTHHT 266
C C TF S H H
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 44.9 bits (105), Expect = 2e-06
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 6 GNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQ 65
+ Y C C+A H R C C RF H+ Y +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKK 69
Query: 66 YYCDACDATFTTKQNLEVH 84
C C TF + ++ H
Sbjct: 70 LTCLECMRTFKSSFSIWRH 88
Score = 44.5 bits (104), Expect = 2e-06
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 34 GERPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTHTGERP 93
+ +QC +C + S +H+R+ C C F + + + H + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ESKCEYKK 69
Query: 94 YQCEVCNKRFSQKSSLNTHK 113
C C + F S+ H+
Sbjct: 70 LTCLECMRTFKSSFSIWRHQ 89
Score = 33.7 bits (76), Expect = 0.014
Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 40/121 (33%)
Query: 90 GERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKPYHCTGCDAAFSRKQYLEVNHTTV 149
+ YQC +CN + S +H+R+ N C C F + +
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNA-------AVCPYCSLRFFSPELKQ------ 59
Query: 150 LAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTH-KRVH 208
+ + C C + F S+ H VH
Sbjct: 60 --------------------------EHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVH 93
Query: 209 T 209
Sbjct: 94 N 94
Score = 29.1 bits (64), Expect = 0.57
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 238 GDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCGRSFVRDSYLIRHQNK 292
+ + C C+ +S + H R VC C F H++K
Sbjct: 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRN---AAVCPYCSLRFFSPELKQEHESK 64
Score = 28.3 bits (62), Expect = 1.1
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHK 57
C C F P L+ + + C+ C++ F ++ H+
Sbjct: 45 CPYCSLRF-FSPELKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQ 89
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 47.5 bits (112), Expect = 3e-06
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+A A + T + YQC VC+ L+ H H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 46.8 bits (110), Expect = 5e-06
Identities = 11/49 (22%), Positives = 15/49 (30%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMH 60
A A + P T + +QC VC L+ H H
Sbjct: 155 AEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 42.5 bits (99), Expect = 1e-04
Identities = 6/55 (10%), Positives = 12/55 (21%)
Query: 215 ACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVGA 269
+ + + + C C S H+ +H G
Sbjct: 154 IAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGN 208
Score = 41.4 bits (96), Expect = 3e-04
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 172 SHQVHMRTHTGERP---FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSY 228
S V + ++P S ++ + + Y C +C
Sbjct: 136 SGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLD 195
Query: 229 VTSHRWSHVGDKPFGCTS 246
+ +H SH TS
Sbjct: 196 LDAHVASHGLHGNMTLTS 213
Score = 40.6 bits (94), Expect = 5e-04
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 37 PFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRTH 88
S+ A Y C C A + +L+ H+ +H
Sbjct: 152 TRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 34.8 bits (79), Expect = 0.032
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIHMRTH 32
S Y C C A L+ H+ +H
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.9 bits (74), Expect = 0.14
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 7/73 (9%)
Query: 224 AVKSYVTSHRWSHVGD------KPFGCTSCHLTFTSKSQFAVHLRTHHTVGANHVCNVCG 277
S + G + + T + G + C+VC
Sbjct: 129 NANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASS-GHGYQCHVCS 187
Query: 278 RSFVRDSYLIRHQ 290
L H
Sbjct: 188 AVLFSPLDLDAHV 200
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 37.6 bits (86), Expect = 2e-04
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 88 HTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
+GE+PY C VC RF +K ++ H R H +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
Score = 35.3 bits (80), Expect = 0.001
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 180 HTGERPFQCAVCSKRFTQKSSLNTHKRVHTG 210
+GE+P+ C VC RF +K ++ H R H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 33.4 bits (75), Expect = 0.005
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 208 HTGERPYACDICDKRFAVKSYVTSHRWSHVG 238
+GE+PY+C +C RF K ++ H SH G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 32.6 bits (73), Expect = 0.010
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 32 HTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+GE+P+ C VC RF +K ++ H R H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
Score = 30.7 bits (68), Expect = 0.051
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTG 34
SG KPY C C F RK + H+R+H G
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 26.8 bits (58), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 236 HVGDKPFGCTSCHLTFTSKSQFAVHLRTHH 265
G+KP+ C C L F K + + H+R+H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 24.9 bits (53), Expect = 6.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 121 HTEDKPYHCTGCDAAFSRKQYL 142
+ +KPY C C F RK +
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRM 26
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.8 bits (86), Expect = 2e-04
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 184 RPFQCAV--CSKRFTQKSSLNTHKRVHTGER 212
RPF C C KRFT+ L HKR HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 36.4 bits (85), Expect = 3e-04
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 8 KPYHCT--ACDASFCRKPYLEIHMRTHTGER 36
+P+ CT C F R L+ H RTHTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.040
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 92 RPYQC--EVCNKRFSQKSSLNTHKRIH 116
RP+ C C KRF++ L HKR H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 29.5 bits (67), Expect = 0.10
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 66 YYCD--ACDATFTTKQNLEVHMRTHTGER 92
+ C C FT L+ H RTHTGE+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 27.2 bits (61), Expect = 0.70
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 212 RPYACDI--CDKRFAVKSYVTSHRWSHVGDK 240
RP+ C C KRF + H+ +H G+K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.8 bits (60), Expect = 0.95
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 36 RPFQCVV--CLKRFSQKSALNTHKRMH 60
RPF C C KRF++ L HKR H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTH 27
Score = 23.7 bits (52), Expect = 9.6
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 33/62 (53%)
Query: 125 KPYHCT--GCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTG 182
+P+ CT C F+R L Q H RTHTG
Sbjct: 1 RPFMCTWSYCGKRFTRSDEL-------------------------------QRHKRTHTG 29
Query: 183 ER 184
E+
Sbjct: 30 EK 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 40.6 bits (94), Expect = 3e-04
Identities = 7/52 (13%), Positives = 15/52 (28%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHI 117
+Y + + +H GE+ Q E + L + +
Sbjct: 181 WYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
Score = 36.3 bits (83), Expect = 0.007
Identities = 8/49 (16%), Positives = 14/49 (28%)
Query: 164 AKFLTSLFSHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
K L S+ +H GE+ Q + L + +
Sbjct: 187 MKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQ 235
Score = 32.1 bits (72), Expect = 0.14
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 25 LEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIP 62
IH GE+ Q + L + +
Sbjct: 196 ETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVL 233
Score = 31.3 bits (70), Expect = 0.31
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 203 THKRVHTGE--RPYACDICDKRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVH 260
+ + GE R + + KR S T HR G+K +
Sbjct: 168 ACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Query: 261 LRTHHT 266
+
Sbjct: 228 IHLSVL 233
Score = 30.9 bits (69), Expect = 0.42
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 188 CAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTSH 232
KR S H+ + GE+ + ++ +
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 29.0 bits (64), Expect = 1.6
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 21 RKPYLEIHMRTHTGE--RPFQCVVCLKRFSQKSALNTHKRMHIPYIQYYCDACDATFTTK 78
+ Y GE R + +KR S H+ + + + +
Sbjct: 162 ERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNP 221
Query: 79 QNLEVHMRTHTGER 92
++L + +
Sbjct: 222 EDLRGPIHLSVLRQ 235
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 35.8 bits (83), Expect = 6e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
R F C VC++ F ++ L H R HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 34.6 bits (80), Expect = 0.001
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
+ + C C +F R+ +L+ H R+HT E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 30.4 bits (69), Expect = 0.043
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
R + CEVC + F+++ L H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 28.4 bits (64), Expect = 0.18
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGER 92
+ C+ C F +++L+ H R+HT E+
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 27.3 bits (61), Expect = 0.54
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
R F C VC + F+++ L H R H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.9 bits (60), Expect = 0.80
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDK 240
R + C++C + FA + ++ H SH +K
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.1 bits (58), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 271 HVCNVCGRSFVRDSYLIRHQ 290
VC VC R+F R +L RH
Sbjct: 3 FVCEVCTRAFARQEHLKRHY 22
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 34.4 bits (78), Expect = 0.002
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+P QC +C K FTQ SSL H R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 27.0 bits (59), Expect = 0.84
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
+P QCV+C K F+Q S+L H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 26.7 bits (58), Expect = 1.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+P QC +C K F+Q SSL H R H
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQH 25
Score = 25.5 bits (55), Expect = 2.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KP C C +F + L H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 24.0 bits (51), Expect = 8.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 68 CDACDATFTTKQNLEVHMRTHTGER 92
C C FT +L H+R HTGE+
Sbjct: 5 CVMCGKAFTQASSLIAHVRQHTGEK 29
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 34.0 bits (77), Expect = 0.003
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 180 HTGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
+G+RPF C +C FT K++ H +VHT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 32.4 bits (73), Expect = 0.009
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 88 HTGERPYQCEVCNKRFSQKSSLNTHKRIHINYL 120
+G+RP+ C +C F+ K++ H ++H + L
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 29.3 bits (65), Expect = 0.12
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHT 33
SG +P+ C C ++F K H++ HT
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 29.3 bits (65), Expect = 0.13
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 32 HTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+G+RPF C +CL F+ K+ H ++H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 29.0 bits (64), Expect = 0.16
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 236 HVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
G +PF C C FT+K+ A HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.8 bits (61), Expect = 0.40
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHT 89
+ C C + FTTK N H++ HT
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHT 31
Score = 27.4 bits (60), Expect = 0.61
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 208 HTGERPYACDICDKRFAVKSYVTSHRWSH 236
+G+RP+ C IC F K+ H H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 33.6 bits (76), Expect = 0.003
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTG 210
RP+ C+VC KRF+ K + TH RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 31.7 bits (71), Expect = 0.018
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
RPY C VC KRFS K + TH R+H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 27.8 bits (61), Expect = 0.34
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
RP+ C VC KRFS K + TH R+H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVH 26
Score = 26.7 bits (58), Expect = 0.94
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVG 238
RPY+C +C KRF++K + +H H G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.9 bits (56), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTG 34
+PY C+ C F K +E H R HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 24.8 bits (53), Expect = 4.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTG 90
Y C C F+ K +E H R HTG
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 33.7 bits (76), Expect = 0.004
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
S KPY C C + K L +H+R HTGE+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 32.1 bits (72), Expect = 0.012
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C K NL VH+R HTGE+
Sbjct: 10 YKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 30.2 bits (67), Expect = 0.073
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+ +P++C CS K++LN H R HTGE+
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.7 bits (58), Expect = 0.97
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 209 TGERPYACDICDKRFAVKSYVTSHRWSHVGDK 240
+ +PY C C A+K+ + H H G+K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 25.2 bits (54), Expect = 3.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+ +PY+C C+ + K++LN H R H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 33.5 bits (77), Expect = 0.004
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 181 TGERPFQCAV--CSKRFTQKSSLNTHKRVHTGER 212
++ C + C K + + S L H R HTGER
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.8 bits (70), Expect = 0.033
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 5 SGNKPYHCT--ACDASFCRKPYLEIHMRTHTGER 36
K + C C + + +L H+R HTGER
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 28.9 bits (65), Expect = 0.15
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 65 QYYCD--ACDATFTTKQNLEVHMRTHTGER 92
Q+ C C + +L H+R HTGER
Sbjct: 8 QHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 26.5 bits (59), Expect = 1.0
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 89 TGERPYQCEV--CNKRFSQKSSLNTHKRIH 116
++ + C + C K + + S L H R H
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWH 33
Score = 25.4 bits (56), Expect = 2.9
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 209 TGERPYACDI--CDKRFAVKSYVTSHRWSHVGDK 240
++ + C I C K + S++ +H H G++
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 32.4 bits (73), Expect = 0.009
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+P+ C C ++F +L H R+HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.0 bits (64), Expect = 0.16
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+PY C C ++F+ +L H RIH
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 28.2 bits (62), Expect = 0.32
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 8 KPYHCTACDASFCRKPYLEIHMRTHTGER 36
KPY C C F L+ H+R HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 26.3 bits (57), Expect = 1.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
+P+ C+ C ++F+ AL H R+H
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIH 26
Score = 25.5 bits (55), Expect = 2.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C F L+ H+R HTGE+
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 24.3 bits (52), Expect = 6.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 212 RPYACDICDKRFAVKSYVTSHRWSHVGDK 240
+PY C C ++FA + H H G+K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 36.3 bits (83), Expect = 0.011
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 240 KPFGCTSCHLTFTSKSQFAVHLRTHHTVGAN 270
+ C C+ F++ S + HLR+ H A+
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDAS 145
Score = 28.6 bits (63), Expect = 2.9
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 94 YQCEVCNKRFSQKSSLNTHKR 114
Y C VCN RFS S+L+ H R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
Score = 28.2 bits (62), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 38 FQCVVCLKRFSQKSALNTHKR 58
+ C VC RFS SAL+ H R
Sbjct: 117 YVCNVCNARFSTMSALSEHLR 137
Score = 27.9 bits (61), Expect = 5.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 65 QYYCDACDATFTTKQNLEVHMRT 87
Y C+ C+A F+T L H+R+
Sbjct: 116 SYVCNVCNARFSTMSALSEHLRS 138
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (71), Expect = 0.022
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 181 TGERPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+ E+ QC C + F Q SL H+ +H G++
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
Score = 29.8 bits (66), Expect = 0.100
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 89 TGERPYQCEVCNKRFSQKSSLNTHKRIHI 117
+ E+ +QC C + F Q SL H+ +H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
Score = 24.8 bits (53), Expect = 7.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 33 TGERPFQCVVCLKRFSQKSALNTHKRMHI 61
+ E+ QC C + F Q +L H+ +H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQVLHM 36
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.044
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 179 THTGERPFQCAVCSKRFTQKSSLNTHKRVHT 209
+ E+ F+C C K F+ L H+R+HT
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 30.6 bits (68), Expect = 0.063
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 87 THTGERPYQCEVCNKRFSQKSSLNTHKRIH 116
+ E+ ++C C K FS L H+RIH
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 29.0 bits (64), Expect = 0.22
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHT 33
K + C C+ +F YL H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 28.6 bits (63), Expect = 0.25
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 208 HTGERPYACDICDKRFAVKSYVTSHRWSH 236
E+ + C+ C+K F+ Y+T H H
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 27.9 bits (61), Expect = 0.46
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 31 THTGERPFQCVVCLKRFSQKSALNTHKRMH 60
+ E+ F+C C K FS L H+R+H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 27.5 bits (60), Expect = 0.77
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 235 SHVGDKPFGCTSCHLTFTSKSQFAVHLRTH 264
S +K F C C TF+ H R H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIH 35
Score = 26.3 bits (57), Expect = 1.7
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 60 HIPYIQYYCDACDATFTTKQNLEVHMRTHT 89
+ C+ C+ TF+ + L H R HT
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 31.7 bits (71), Expect = 0.071
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 231 SHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT---VGANHVCNVCGRSFVRDSYLI 287
++ + + + C C + F H+ + H + +++VC C R L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 288 RHQNK 292
H K
Sbjct: 68 EHNLK 72
Score = 31.3 bits (70), Expect = 0.10
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 28 HMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPYIQ----YYCDACDATFTTKQNLEV 83
+ + E ++C C + + H P + Y C C+ L
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 84 H-MRTHTGERPYQCEV 98
H ++ H GE ++ +
Sbjct: 69 HNLKYHPGEENFKLTM 84
Score = 30.9 bits (69), Expect = 0.13
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 4/85 (4%)
Query: 199 SSLNTHKRVHTGERPYACDICDKRFAVKSYVTSHRWSH----VGDKPFGCTSCHLTFTSK 254
+ +++ E Y C C + + T H S V + + C C+
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 255 SQFAVHLRTHHTVGANHVCNVCGRS 279
+ H +H N + R+
Sbjct: 64 DALSEHNLKYHPGEENFKLTMVKRN 88
Score = 28.2 bits (62), Expect = 1.3
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 51 SALNTHKRMHIPYIQYYCDACDATFTTKQNLEVHMRT-HTGER---PYQCEVCNKRFSQK 106
+ +++ Y C C H+ + H Y C CN +
Sbjct: 4 HHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRY 63
Query: 107 SSLNTH 112
+L+ H
Sbjct: 64 DALSEH 69
Score = 27.0 bits (59), Expect = 2.9
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 4/66 (6%)
Query: 1 MKLHSGNKPYHCTACDASFCRKPYLEIHMRT-HTGER---PFQCVVCLKRFSQKSALNTH 56
+ Y C C H+ + H + CV C + AL+ H
Sbjct: 10 QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Query: 57 KRMHIP 62
+ P
Sbjct: 70 NLKYHP 75
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.075
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 2 KLHSGNKPYHCTACDASFCRKPYLEIH 28
KL + K Y A D++ P L I
Sbjct: 24 KLQASLKLY---ADDSA----PALAIK 43
Score = 31.8 bits (71), Expect = 0.11
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 197 QKSSLNTHKRVHTGERPYACDICDKRFAVKSYV 229
+K +L K++ + YA D A+K+ +
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPA-LAIKATM 46
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 30.2 bits (68), Expect = 0.079
Identities = 8/32 (25%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHTGER 212
++ F+C C+K F ++ ++ +H + H +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.1 bits (65), Expect = 0.23
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 71 CDATFTTKQNLEVHMRTHTGER 92
C TF + N+ H++TH +R
Sbjct: 26 CTKTFKRRYNIRSHIQTHLEDR 47
Score = 27.1 bits (60), Expect = 0.93
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 7 NKPYHCT--ACDASFCRKPYLEIHMRTHTGER 36
+K + C C +F R+ + H++TH +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 26.4 bits (58), Expect = 1.8
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 91 ERPYQCEV--CNKRFSQKSSLNTHKRIHIN 118
++ ++C C K F ++ ++ +H + H+
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLE 45
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.7 bits (68), Expect = 0.15
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 65 QYYCDACDA-TFTTKQNLEVHMRT-HTGERPYQCEVCNKRFSQKSSLNTHKR 114
+ C C+ T T L+ HM + +C+ C K+F K+ LN H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTM 75
Score = 28.4 bits (62), Expect = 1.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 176 HMRT-HTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
HM + +C C K+F K+ LN H +P
Sbjct: 44 HMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 26.1 bits (56), Expect = 5.7
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 5 SGNKPYHCTACDASFCRKPY-LEIHMRT-HTGERPFQCVVCLKRFSQKSALNTHKRM 59
C C+ + L+ HM + +C C K+F K+ LN H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Score = 25.7 bits (55), Expect = 10.0
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 214 YACDICD--KRFAVKSYVTSHRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHT 266
C C+ R + C C F SK+ H H+
Sbjct: 25 AVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHS 79
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.6 bits (68), Expect = 0.16
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 65 QYYCDACDA-TFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKR 114
C C A T + L+ HM + + C C K+ + + H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVM 83
Score = 27.1 bits (59), Expect = 3.0
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 176 HMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERP 213
HM + F C C K+ + + H + P
Sbjct: 54 HMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.1 bits (64), Expect = 0.19
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 182 GERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+ +C C K F S L H+ +H GE
Sbjct: 9 AKTTSECQECGKIFRHSSLLIEHQALHAGE 38
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 30.8 bits (69), Expect = 0.22
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 65 QYYCDACDATFTTKQNLEVHMRT 87
+ C AC F NL+ H R+
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.23
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 272 VCNVCGRSFVRDSYLIRHQNK 292
C +C R+F R LIRH K
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQK 24
Score = 26.0 bits (57), Expect = 1.6
Identities = 8/28 (28%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 184 RPFQCAVCSKRFTQKSSLNTH-KRVHTG 210
+ + C +C++ FT++ L H +++H+G
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 24.8 bits (54), Expect = 4.5
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKR 114
+ Y C +CN+ F+++ L H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQ 23
Score = 24.0 bits (52), Expect = 9.3
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKR 58
+ + C +C + F+++ L H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQ 23
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.7 bits (63), Expect = 0.25
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGER 212
F C C+K F K SL H R+HT E+
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.3 bits (62), Expect = 0.28
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
S K + C C+ F K L+ H+R HT E+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.5 bits (60), Expect = 0.55
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 65 QYYCDACDATFTTKQNLEVHMRTHTGER 92
+ C+ C+ F K +L+ H+R HT E+
Sbjct: 9 IFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.7 bits (58), Expect = 1.1
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHIN 118
+ CE CNK F K SL H RIH N
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTN 34
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 28.2 bits (62), Expect = 0.27
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHIN 118
Y+C +C + F +KS+L+ H+R+H N
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVHKN 26
Score = 27.8 bits (61), Expect = 0.38
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVH 208
++C +C + F +KS+L+ H+RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 25.1 bits (54), Expect = 3.3
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 38 FQCVVCLKRFSQKSALNTHKRMH 60
++C +C + F +KSAL+ H+R+H
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.42
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 211 ERPYACDICDKRFAVKSYVTSHRWSHVGD 239
+ + CD+C K+F K + SH+ H D
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 26.3 bits (57), Expect = 1.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVHTGE 211
+ C +C K+F K +L +HK +HT +
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
Score = 26.3 bits (57), Expect = 1.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKRIH 116
+ + C++C K+F K +L +HK +H
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHKLLH 32
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 27.8 bits (61), Expect = 0.51
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHKR 114
++PY C++C KR+ + L+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
Score = 25.9 bits (56), Expect = 2.9
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKR 206
++P+ C +C KR+ + L+ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHYA 28
Score = 25.5 bits (55), Expect = 3.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 211 ERPYACDICDKRFAVKSYVTSHR 233
++PYACDIC KR+ + ++ H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYHY 27
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.53
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
+PY CE C KRF Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 25.0 bits (54), Expect = 3.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVH 208
+P+ C C KRF Q S L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.5 bits (65), Expect = 0.63
Identities = 12/77 (15%), Positives = 21/77 (27%)
Query: 67 YCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTEDKP 126
C C A ++ H ++ + + + K ED+
Sbjct: 34 QCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRS 93
Query: 127 YHCTGCDAAFSRKQYLE 143
C C+ FS E
Sbjct: 94 KCCPVCNMTFSSPVVAE 110
Score = 27.6 bits (60), Expect = 2.4
Identities = 16/86 (18%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 184 RPFQCAVCSKRFTQKSSLNTH-------KRVHTGERPYACDICDKRFAVKSYVTSHRWSH 236
QC VCS +S H +V + K+
Sbjct: 31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGE 90
Query: 237 VGDKPFGCTSCHLTFTSKSQFAVHLR 262
D+ C C++TF+S H
Sbjct: 91 --DRSKCCPVCNMTFSSPVVAESHYI 114
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 26.8 bits (59), Expect = 0.86
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERP 213
F C C KRF + L+ H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 24.5 bits (53), Expect = 5.6
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIH 116
+ C C KRF + L+ H +H
Sbjct: 3 FACPECPKRFMRSDHLSKHITLH 25
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 26.8 bits (59), Expect = 0.91
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGER 212
F C C KRF + L H +H ++
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHENKK 29
Score = 25.2 bits (55), Expect = 3.4
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 94 YQCEVCNKRFSQKSSLNTHKRIHIN 118
+ C C KRF + L H +H N
Sbjct: 3 FACPECPKRFMRSDHLTLHILLHEN 27
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 27.0 bits (60), Expect = 0.98
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
R + C+ C + F +L H VH +R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 26.6 bits (59), Expect = 1.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
Y C C F + Q L HM H +R
Sbjct: 7 YTCSFCKREFRSAQALGGHMNVHRRDR 33
Score = 24.7 bits (54), Expect = 5.2
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 92 RPYQCEVCNKRFSQKSSLNTHKRIH 116
R Y C C + F +L H +H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
Score = 23.9 bits (52), Expect = 9.3
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 36 RPFQCVVCLKRFSQKSALNTHKRMH 60
R + C C + F AL H +H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 27.0 bits (59), Expect = 0.99
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 183 ERPFQCAV--CSKRFTQKSSLNTHKRVHT 209
++PF C C +RFT + L HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
Score = 25.4 bits (55), Expect = 3.4
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 239 DKPFGCTS--CHLTFTSKSQFAVHLRTH 264
DKPF CT+ C FT++ AVH H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 24.6 bits (53), Expect = 6.5
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 91 ERPYQCEV--CNKRFSQKSSLNTHKRIH 116
++P+ C C +RF+ + L HK H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1
Length = 88
Score = 27.9 bits (61), Expect = 1.1
Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPY 63
N Y C CD+ L H+ H E QK A +R +
Sbjct: 20 RLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE------------FQKRAKRQERRKQLLS 67
Query: 64 IQYYCDACDATF 75
Q Y D A F
Sbjct: 68 KQKYADGAFADF 79
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 1.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 91 ERPYQCEV--CNKRFSQKSSLNTHKRIH 116
+RPY C+ C+K F + L HK+ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28
Score = 24.2 bits (52), Expect = 8.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 183 ERPFQC--AVCSKRFTQKSSLNTHKRVHT 209
+RP+ C C K F + L HK+ H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 26.0 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 5 SGNKPYHCTACDASFCRKPYLEIHMRTHTGER 36
S KP+ C+ C+ + K L+ HM H+ E+
Sbjct: 5 SSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.8 bits (53), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGER 212
+PF+C++C KS+L H H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.8 bits (53), Expect = 5.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 66 YYCDACDATFTTKQNLEVHMRTHTGER 92
+ C C+ +K NL+ HM H+ E+
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNRHSTEK 36
>1z1n_X Sixteen heme cytochrome; electron transport; HET: NAG NAA HEC;
2.10A {Desulfovibrio gigas}
Length = 560
Score = 29.0 bits (62), Expect = 2.3
Identities = 40/277 (14%), Positives = 65/277 (23%), Gaps = 6/277 (2%)
Query: 4 HSGNKPYHCTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKSALNTHKRMHIPY 63
+ + C C + + + VV + Q + K H Y
Sbjct: 126 PTAPQAAECKRCHVGPGVEGATVTPKPSLDLNLHGRHVVAEAKRLQVKEDESCKACHHTY 185
Query: 64 IQYYCDACDATFTTKQNLEVHMRTHTGERPYQCEVCNKRFSQKSSLNTHKRIHINYLHTE 123
+ A + H + Q V + + TE
Sbjct: 186 DEAQKKLVYAKGEEGSCVYCHKQEPLPSPVQQDRVVPSTRDASHESCVNCHLSTRKAQTE 245
Query: 124 DKPYHCTGCDAAFSRKQYLEVNHTTVLAVMQPSLGNNTWSAKFLTSLFSHQVHMRTHTGE 183
P C GC A ++ + + T L QP A
Sbjct: 246 SGPVLCVGCHTAEAQAAWKKTAETPRLFRGQPDATLLVAGAATANGTVDVNWAAAGP--G 303
Query: 184 RPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKS--YVTSHRWSHVGDKP 241
+ F H G C K +VT+ + +H
Sbjct: 304 PVAFDHKAHEGFVGNCVTCHHPTQTGGSLAACGVACHTTTGSKDGNFVTTAQSAHQLGVT 363
Query: 242 FGCTSCHLTFTSKSQ--FAVHLRTHHTVGANHVCNVC 276
C CH T + + H T + + C C
Sbjct: 364 TSCVGCHTTQANARKECAGCHAPMQKTALSQNSCIQC 400
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding
protein, C2H2 type zinc-finger, structural genomics;
NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 26.0 bits (57), Expect = 4.3
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 12 CTACDASFCRKPYLEIHMRTHTGERPFQCVVCLKRFSQKS 51
C AC S +K +E H+ C+ C K F
Sbjct: 13 CNACGESV-KKIQVEKHVSNCRNCECLSCIDCGKDFWGDD 51
>1sp3_A Cytochrome C, putative; octaheme, oxidoreductase; HET: HEM; 2.20A
{Shewanella oneidensis} SCOP: a.138.1.3
Length = 443
Score = 27.7 bits (60), Expect = 5.1
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 7/97 (7%)
Query: 172 SHQVHMRTHTGERPFQCAVCSKRFTQKSSLNTHKRVHTGERPYACDICDKRFAVKSYVTS 231
+ VHM + FQC C + S N G C+ C + +
Sbjct: 167 ATDVHMDS--DGNNFQCQNCHTTEKHQISGNAMGVSPGGIDHIGCENCHDSAPHSNKKLN 224
Query: 232 HRWSHVGDKPFGCTSCHLTFTSKSQFAVHLRTHHTVG 268
+ V C +CH+ F +K++ T G
Sbjct: 225 THTATVA-----CQTCHIPFFAKNEPTKMQWDWSTAG 256
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 24.3 bits (52), Expect = 5.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 183 ERPFQCAVCSKRFTQKSSLNTHKRVH 208
E+PF C++C +R S++ H R H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 27.1 bits (59), Expect = 7.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 91 ERPYQCEVCNKRFSQKSSLNTHK 113
+ C C++ F S +H
Sbjct: 290 AKGIYCPFCSRWFKTSSVFESHL 312
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion,
acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 26.2 bits (58), Expect = 8.5
Identities = 16/105 (15%), Positives = 26/105 (24%), Gaps = 26/105 (24%)
Query: 186 FQCAVCSKRFTQKSSLNTHKRVHTGERPYACDIC-DKRFAVKSYVTSHRWSHVGDKPFGC 244
F C C V ++P C C K AV C
Sbjct: 31 FCCFDCDSILA------GEIYVMVNDKPV-CKPCYVKNHAVV-----------------C 66
Query: 245 TSCHLTFTSKSQFAVHLRTHHTVGANH-VCNVCGRSFVRDSYLIR 288
CH + Q + +C+ C + + ++
Sbjct: 67 QGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMPV 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.132 0.440
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,244,843
Number of extensions: 225489
Number of successful extensions: 3629
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2768
Number of HSP's successfully gapped: 1541
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.4 bits)