Query psy4832
Match_columns 770
No_of_seqs 601 out of 2871
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 18:54:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4832.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4832hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4659|consensus 100.0 7E-151 2E-155 1256.0 70.5 586 1-614 186-776 (1899)
2 PLN02919 haloacid dehalogenase 100.0 8.2E-27 1.8E-31 283.3 36.6 301 176-531 564-889 (1057)
3 KOG4659|consensus 99.9 4.8E-24 1E-28 241.3 39.7 434 219-741 362-846 (1899)
4 PLN02919 haloacid dehalogenase 99.9 6E-24 1.3E-28 258.4 35.0 294 127-460 566-888 (1057)
5 PF08450 SGL: SMP-30/Gluconola 99.8 1.7E-16 3.8E-21 164.6 27.9 219 182-518 2-244 (246)
6 PF08450 SGL: SMP-30/Gluconola 99.7 8.1E-16 1.8E-20 159.6 27.4 196 224-530 2-213 (246)
7 TIGR02604 Piru_Ver_Nterm putat 99.7 1.5E-14 3.2E-19 158.8 27.1 274 177-520 11-340 (367)
8 PF07995 GSDH: Glucose / Sorbo 99.5 7.7E-12 1.7E-16 135.0 26.4 283 179-526 1-331 (331)
9 COG4257 Vgb Streptogramin lyas 99.4 6E-11 1.3E-15 117.1 25.6 237 180-531 62-306 (353)
10 COG4257 Vgb Streptogramin lyas 99.4 8.9E-11 1.9E-15 116.0 21.9 233 222-567 62-306 (353)
11 TIGR02604 Piru_Ver_Nterm putat 99.4 1.7E-10 3.6E-15 126.7 26.5 146 128-312 13-204 (367)
12 PF10282 Lactonase: Lactonase, 99.4 9.8E-10 2.1E-14 119.8 31.3 263 178-529 35-321 (345)
13 COG3386 Gluconolactonase [Carb 99.4 1.9E-10 4.1E-15 121.4 24.6 202 183-467 28-250 (307)
14 PRK11028 6-phosphogluconolacto 99.3 1.9E-09 4.1E-14 117.0 32.0 249 180-527 35-301 (330)
15 COG3386 Gluconolactonase [Carb 99.3 5.7E-10 1.2E-14 117.7 26.1 203 222-531 25-244 (307)
16 PF10282 Lactonase: Lactonase, 99.3 1.2E-08 2.5E-13 111.4 34.7 240 201-529 17-274 (345)
17 PRK11028 6-phosphogluconolacto 99.2 5.3E-08 1.2E-12 105.7 34.2 236 193-528 4-256 (330)
18 KOG1214|consensus 99.2 1E-09 2.2E-14 121.7 19.5 223 192-532 992-1228(1289)
19 COG3391 Uncharacterized conser 99.2 1.2E-08 2.6E-13 112.5 28.0 238 181-530 32-283 (381)
20 KOG1214|consensus 99.1 7.1E-10 1.5E-14 122.9 15.0 188 182-456 1027-1225(1289)
21 COG3391 Uncharacterized conser 99.1 3E-08 6.4E-13 109.4 27.4 235 130-459 32-282 (381)
22 TIGR03606 non_repeat_PQQ dehyd 99.1 9.5E-08 2.1E-12 105.4 30.5 184 177-380 27-262 (454)
23 KOG1520|consensus 99.0 5.4E-09 1.2E-13 109.6 16.7 156 290-518 113-282 (376)
24 COG2706 3-carboxymuconate cycl 99.0 2.4E-06 5.2E-11 88.4 32.4 261 173-526 33-317 (346)
25 PF07995 GSDH: Glucose / Sorbo 99.0 2.9E-07 6.4E-12 99.4 27.1 235 221-529 1-288 (331)
26 COG2706 3-carboxymuconate cycl 98.9 9.7E-07 2.1E-11 91.3 28.2 215 180-467 89-331 (346)
27 PF06977 SdiA-regulated: SdiA- 98.9 5.7E-07 1.2E-11 91.9 23.3 208 179-448 21-242 (248)
28 COG2133 Glucose/sorbosone dehy 98.9 6.3E-07 1.4E-11 96.6 24.3 288 173-530 60-397 (399)
29 PF06977 SdiA-regulated: SdiA- 98.8 1E-06 2.2E-11 90.2 21.3 209 221-527 21-247 (248)
30 TIGR03606 non_repeat_PQQ dehyd 98.7 4.4E-05 9.6E-10 84.5 33.1 32 218-250 26-57 (454)
31 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 0.00011 2.3E-09 77.7 34.1 230 181-528 32-277 (300)
32 PF03527 RHS: RHS protein; In 98.6 8.1E-09 1.8E-13 72.9 0.7 39 716-754 2-40 (41)
33 COG3204 Uncharacterized protei 98.5 2.6E-05 5.6E-10 79.1 22.4 199 182-448 88-304 (316)
34 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 0.0012 2.7E-08 69.5 35.9 220 191-528 1-235 (300)
35 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00051 1.1E-08 74.0 32.3 103 139-251 11-135 (352)
36 KOG1520|consensus 98.4 7.3E-06 1.6E-10 86.4 16.3 152 126-309 112-282 (376)
37 TIGR01643 YD_repeat_2x YD repe 98.3 1.9E-06 4.2E-11 62.5 6.0 39 635-673 3-41 (42)
38 PF03022 MRJP: Major royal jel 98.3 0.00016 3.4E-09 76.4 23.0 198 182-447 3-255 (287)
39 PF03022 MRJP: Major royal jel 98.2 0.00019 4.2E-09 75.7 21.2 212 223-518 2-253 (287)
40 COG2133 Glucose/sorbosone dehy 98.1 0.00066 1.4E-08 73.6 24.0 265 128-453 66-393 (399)
41 PF05593 RHS_repeat: RHS Repea 98.1 5E-06 1.1E-10 58.7 4.9 35 635-669 3-37 (38)
42 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0083 1.8E-07 64.7 31.7 109 191-326 13-144 (352)
43 PF01436 NHL: NHL repeat; Int 98.1 5.3E-06 1.2E-10 54.2 4.5 28 500-527 1-28 (28)
44 TIGR03118 PEPCTERM_chp_1 conse 98.1 0.0012 2.6E-08 67.8 23.2 234 218-530 19-279 (336)
45 PF02239 Cytochrom_D1: Cytochr 98.0 0.0024 5.3E-08 70.0 26.7 184 193-463 8-206 (369)
46 KOG0318|consensus 98.0 0.028 6.1E-07 61.3 33.2 67 123-198 187-254 (603)
47 PF03088 Str_synth: Strictosid 97.9 4.8E-05 1E-09 64.5 8.3 64 184-250 2-85 (89)
48 COG3209 RhsA Rhs family protei 97.9 8.6E-05 1.9E-09 90.4 13.5 128 635-770 466-608 (796)
49 PF01436 NHL: NHL repeat; Int 97.8 2.5E-05 5.4E-10 51.0 4.0 25 427-451 1-25 (28)
50 TIGR03118 PEPCTERM_chp_1 conse 97.8 0.0064 1.4E-07 62.6 23.0 222 175-463 18-283 (336)
51 PF03088 Str_synth: Strictosid 97.8 9.7E-05 2.1E-09 62.6 8.4 63 355-454 1-84 (89)
52 COG3204 Uncharacterized protei 97.8 0.0041 9E-08 63.5 21.2 215 223-529 87-311 (316)
53 KOG0291|consensus 97.8 0.037 8E-07 62.9 30.2 270 149-525 306-607 (893)
54 KOG4499|consensus 97.8 0.00032 6.9E-09 68.7 12.4 120 351-510 157-287 (310)
55 TIGR01643 YD_repeat_2x YD repe 97.7 7.8E-05 1.7E-09 54.0 5.7 41 654-698 1-41 (42)
56 PF05593 RHS_repeat: RHS Repea 97.7 6E-05 1.3E-09 53.2 4.9 37 654-694 1-37 (38)
57 TIGR03032 conserved hypothetic 97.6 0.046 1E-06 56.9 25.3 191 203-467 34-239 (335)
58 PF05787 DUF839: Bacterial pro 97.6 0.0041 9E-08 71.0 19.6 98 349-467 347-475 (524)
59 PF05096 Glu_cyclase_2: Glutam 97.6 0.025 5.3E-07 58.0 22.7 202 182-456 47-260 (264)
60 KOG4499|consensus 97.5 0.0021 4.6E-08 63.1 13.6 118 185-324 114-247 (310)
61 PF02239 Cytochrom_D1: Cytochr 97.4 0.32 7E-06 53.4 33.4 66 294-382 39-111 (369)
62 cd00200 WD40 WD40 domain, foun 97.2 0.31 6.8E-06 49.7 32.2 221 183-525 55-286 (289)
63 KOG1215|consensus 97.2 0.0086 1.9E-07 73.8 17.8 190 180-456 437-638 (877)
64 KOG1215|consensus 97.2 0.02 4.4E-07 70.6 20.6 221 190-529 408-638 (877)
65 COG3209 RhsA Rhs family protei 97.2 0.0067 1.5E-07 74.0 16.0 145 576-748 40-186 (796)
66 KOG0318|consensus 97.1 0.64 1.4E-05 51.1 34.2 141 428-602 364-518 (603)
67 PF05787 DUF839: Bacterial pro 97.0 0.01 2.2E-07 67.9 14.8 87 217-309 345-453 (524)
68 KOG0291|consensus 96.8 0.91 2E-05 52.1 26.8 160 221-467 350-518 (893)
69 PRK02888 nitrous-oxide reducta 96.4 0.45 9.7E-06 54.6 21.7 108 123-241 126-254 (635)
70 TIGR03032 conserved hypothetic 96.4 0.25 5.3E-06 51.6 17.5 173 176-388 45-240 (335)
71 PF13449 Phytase-like: Esteras 96.2 1.3 2.9E-05 47.7 23.2 71 293-370 86-165 (326)
72 KOG0772|consensus 96.1 2.3 4.9E-05 47.0 23.5 75 182-264 170-249 (641)
73 PF02333 Phytase: Phytase; In 95.9 0.78 1.7E-05 49.9 19.6 28 353-380 209-237 (381)
74 COG3211 PhoX Predicted phospha 95.9 0.12 2.5E-06 57.8 13.2 27 424-450 413-440 (616)
75 PRK02888 nitrous-oxide reducta 95.8 0.58 1.3E-05 53.7 19.0 81 428-528 321-402 (635)
76 COG3292 Predicted periplasmic 95.8 0.39 8.4E-06 53.5 16.5 65 183-250 250-315 (671)
77 KOG1446|consensus 95.6 3.3 7.2E-05 43.0 30.8 235 130-463 16-266 (311)
78 KOG0263|consensus 95.6 1 2.3E-05 51.8 19.8 66 430-527 580-646 (707)
79 cd00200 WD40 WD40 domain, foun 95.6 3.1 6.6E-05 42.2 34.9 146 182-380 12-165 (289)
80 PF13449 Phytase-like: Esteras 95.4 1.2 2.6E-05 48.1 19.1 73 353-447 86-167 (326)
81 COG3823 Glutamine cyclotransfe 95.4 1.2 2.6E-05 43.6 16.3 183 183-446 49-248 (262)
82 KOG0640|consensus 95.3 4.1 8.9E-05 42.2 21.2 194 224-512 175-372 (430)
83 PRK01742 tolB translocation pr 95.1 3.6 7.8E-05 46.3 22.6 64 183-250 207-278 (429)
84 COG3211 PhoX Predicted phospha 95.1 0.24 5.2E-06 55.3 12.3 89 218-310 413-518 (616)
85 PF13360 PQQ_2: PQQ-like domai 95.0 4.5 9.8E-05 40.9 27.5 66 298-386 32-101 (238)
86 KOG0286|consensus 94.8 5.6 0.00012 41.0 26.0 136 294-520 189-335 (343)
87 PRK04792 tolB translocation pr 94.7 7.1 0.00015 44.2 23.7 63 184-250 222-292 (448)
88 KOG1446|consensus 94.7 6.4 0.00014 40.9 26.7 232 181-527 16-259 (311)
89 PF13360 PQQ_2: PQQ-like domai 94.6 5.8 0.00013 40.1 26.6 138 199-385 3-146 (238)
90 PRK03629 tolB translocation pr 94.5 10 0.00022 42.7 24.7 64 183-250 202-273 (429)
91 PF15283 DUF4595: Domain of un 94.5 0.68 1.5E-05 46.0 12.9 97 633-732 2-113 (197)
92 PF06788 UPF0257: Uncharacteri 94.5 3 6.5E-05 42.1 17.2 35 650-685 123-157 (236)
93 KOG2106|consensus 94.4 9.9 0.00021 42.1 29.3 137 180-370 247-386 (626)
94 PF14517 Tachylectin: Tachylec 94.3 0.94 2E-05 45.5 13.3 162 292-529 34-205 (229)
95 KOG0272|consensus 94.3 4.8 0.0001 43.4 19.0 173 185-449 181-367 (459)
96 KOG1274|consensus 94.2 14 0.00031 43.8 23.9 146 182-384 16-173 (933)
97 PF15283 DUF4595: Domain of un 94.0 0.98 2.1E-05 44.9 12.9 42 636-677 56-104 (197)
98 smart00135 LY Low-density lipo 94.0 0.12 2.6E-06 36.9 4.7 32 219-250 6-37 (43)
99 PRK04922 tolB translocation pr 93.7 11 0.00025 42.3 22.6 63 184-250 208-278 (433)
100 smart00135 LY Low-density lipo 93.7 0.14 3.1E-06 36.5 4.7 33 350-382 7-41 (43)
101 PF00058 Ldl_recept_b: Low-den 93.6 0.17 3.6E-06 36.5 4.9 38 191-231 1-42 (42)
102 COG4946 Uncharacterized protei 93.6 14 0.0003 40.7 33.2 192 505-705 280-501 (668)
103 PF00058 Ldl_recept_b: Low-den 93.3 0.25 5.5E-06 35.6 5.4 24 364-387 1-28 (42)
104 PRK02889 tolB translocation pr 93.0 19 0.0004 40.5 28.6 48 200-250 177-226 (427)
105 PRK03629 tolB translocation pr 93.0 19 0.00041 40.5 27.4 68 296-386 247-326 (429)
106 TIGR03696 Rhs_assc_core RHS re 92.8 0.038 8.3E-07 45.7 0.6 27 742-770 1-27 (76)
107 KOG0266|consensus 92.7 21 0.00046 40.4 27.0 149 183-380 163-318 (456)
108 PF14517 Tachylectin: Tachylec 92.4 2.2 4.9E-05 42.9 12.5 157 179-379 33-205 (229)
109 PF05935 Arylsulfotrans: Aryls 92.4 24 0.00052 40.3 23.6 160 200-391 129-313 (477)
110 PF05096 Glu_cyclase_2: Glutam 92.3 6.9 0.00015 40.4 16.1 61 190-250 184-259 (264)
111 KOG2055|consensus 91.8 23 0.00051 38.8 20.3 25 493-517 475-500 (514)
112 PRK05137 tolB translocation pr 91.5 28 0.0006 39.2 27.7 48 200-250 183-232 (435)
113 PRK04922 tolB translocation pr 91.4 29 0.00062 39.1 26.9 26 225-250 207-234 (433)
114 KOG0266|consensus 91.4 30 0.00065 39.3 24.9 110 180-321 204-321 (456)
115 PRK00178 tolB translocation pr 91.2 29 0.00064 38.8 24.7 64 183-250 202-273 (430)
116 PRK04792 tolB translocation pr 91.1 31 0.00068 39.0 26.8 68 296-386 266-345 (448)
117 TIGR02800 propeller_TolB tol-p 90.8 30 0.00066 38.4 23.5 63 184-250 194-264 (417)
118 KOG0772|consensus 90.8 31 0.00068 38.4 21.5 214 223-529 169-395 (641)
119 COG4946 Uncharacterized protei 90.7 30 0.00066 38.2 33.0 104 511-617 380-493 (668)
120 PRK01742 tolB translocation pr 90.3 36 0.00077 38.3 25.9 63 296-381 252-325 (429)
121 PRK02939 lipoprotein; Reviewed 90.2 22 0.00048 35.8 18.0 90 650-743 123-228 (236)
122 KOG1274|consensus 90.1 49 0.0011 39.6 25.0 194 130-381 15-219 (933)
123 KOG0279|consensus 90.0 25 0.00055 36.2 24.6 142 183-378 67-220 (315)
124 PRK11138 outer membrane biogen 90.0 35 0.00076 37.8 26.7 57 302-383 256-316 (394)
125 KOG0282|consensus 89.6 9.6 0.00021 41.9 14.6 192 225-531 218-416 (503)
126 PF05935 Arylsulfotrans: Aryls 89.4 23 0.00051 40.4 18.8 138 185-330 153-313 (477)
127 COG3292 Predicted periplasmic 89.4 16 0.00036 41.2 16.5 113 296-465 380-496 (671)
128 PF02333 Phytase: Phytase; In 89.3 23 0.0005 38.8 17.5 70 177-251 153-236 (381)
129 PF06433 Me-amine-dh_H: Methyl 88.6 38 0.00083 36.3 23.3 111 191-326 3-134 (342)
130 KOG2106|consensus 88.5 46 0.001 37.1 27.4 69 430-527 450-518 (626)
131 TIGR02800 propeller_TolB tol-p 88.0 48 0.001 36.8 28.1 26 225-250 193-220 (417)
132 KOG0645|consensus 87.9 35 0.00076 35.1 24.2 150 181-378 16-178 (312)
133 TIGR03300 assembly_YfgL outer 87.8 47 0.001 36.4 32.1 55 190-250 65-121 (377)
134 PF14269 Arylsulfotran_2: Aryl 87.8 41 0.00089 35.8 24.0 127 177-324 141-294 (299)
135 KOG0279|consensus 87.4 38 0.00083 34.9 29.3 189 223-523 17-215 (315)
136 PRK00178 tolB translocation pr 86.9 57 0.0012 36.5 27.8 48 200-250 180-229 (430)
137 PRK11138 outer membrane biogen 86.5 57 0.0012 36.1 31.7 58 190-250 69-136 (394)
138 PLN00181 protein SPA1-RELATED; 85.9 95 0.0021 38.0 35.8 67 182-250 486-561 (793)
139 PF01731 Arylesterase: Arylest 85.7 1.9 4.1E-05 36.5 5.3 33 218-250 50-82 (86)
140 KOG0282|consensus 85.5 20 0.00042 39.6 14.0 56 293-370 301-360 (503)
141 PF01731 Arylesterase: Arylest 85.3 1.5 3.2E-05 37.1 4.5 28 426-453 52-80 (86)
142 KOG0272|consensus 84.2 69 0.0015 35.0 20.6 138 294-524 306-454 (459)
143 KOG0283|consensus 84.0 52 0.0011 38.7 17.5 71 352-462 410-483 (712)
144 PF14269 Arylsulfotran_2: Aryl 83.7 65 0.0014 34.3 23.2 131 291-464 143-293 (299)
145 KOG0268|consensus 83.7 19 0.00041 38.4 12.5 68 430-528 275-345 (433)
146 KOG0263|consensus 83.4 69 0.0015 37.6 17.9 132 295-517 455-594 (707)
147 PF07202 Tcp10_C: T-complex pr 83.2 47 0.001 32.3 18.1 32 634-669 142-173 (179)
148 PF06739 SBBP: Beta-propeller 83.2 0.94 2E-05 31.8 2.1 19 293-311 14-32 (38)
149 PF06739 SBBP: Beta-propeller 82.8 1.3 2.9E-05 31.0 2.7 21 428-448 13-33 (38)
150 PF07433 DUF1513: Protein of u 82.7 70 0.0015 33.9 20.1 167 186-384 57-252 (305)
151 PRK02889 tolB translocation pr 81.7 95 0.0021 34.8 27.4 31 356-387 200-236 (427)
152 PRK01029 tolB translocation pr 80.8 1E+02 0.0022 34.6 23.6 51 186-240 191-249 (428)
153 PF13860 FlgD_ig: FlgD Ig-like 80.5 5.9 0.00013 33.0 6.4 53 22-79 13-67 (81)
154 COG3823 Glutamine cyclotransfe 78.8 4.7 0.0001 39.7 5.8 60 190-249 185-256 (262)
155 PRK02939 lipoprotein; Reviewed 78.3 52 0.0011 33.2 13.1 38 696-733 123-160 (236)
156 PRK13616 lipoprotein LpqB; Pro 78.2 1.5E+02 0.0032 34.9 25.3 162 179-385 349-532 (591)
157 PLN00181 protein SPA1-RELATED; 77.9 1.8E+02 0.0038 35.7 35.6 66 182-250 535-604 (793)
158 KOG2110|consensus 77.9 64 0.0014 34.6 14.1 69 430-527 176-245 (391)
159 KOG1539|consensus 77.3 1.1E+02 0.0025 36.3 17.0 67 181-249 450-519 (910)
160 PF06433 Me-amine-dh_H: Methyl 77.0 1.1E+02 0.0024 32.9 23.9 31 428-460 95-126 (342)
161 PF06788 UPF0257: Uncharacteri 76.9 40 0.00086 34.2 11.9 15 696-710 143-157 (236)
162 KOG0301|consensus 76.5 57 0.0012 37.8 14.2 68 178-249 178-246 (745)
163 TIGR02276 beta_rpt_yvtn 40-res 74.4 15 0.00032 25.7 6.3 20 231-250 1-20 (42)
164 PRK05137 tolB translocation pr 72.7 1.7E+02 0.0036 32.9 23.1 16 513-528 183-198 (435)
165 PTZ00420 coronin; Provisional 71.9 2E+02 0.0044 33.5 23.7 26 503-528 170-195 (568)
166 COG5276 Uncharacterized conser 70.0 1.5E+02 0.0032 31.2 22.7 140 190-382 96-243 (370)
167 KOG0646|consensus 69.7 1.9E+02 0.004 32.2 17.1 64 183-250 85-151 (476)
168 PF07433 DUF1513: Protein of u 69.2 1.6E+02 0.0035 31.3 26.9 68 428-531 217-286 (305)
169 KOG0278|consensus 68.9 1.4E+02 0.0031 30.5 16.0 105 293-459 186-298 (334)
170 PF00930 DPPIV_N: Dipeptidyl p 68.7 1.7E+02 0.0036 31.8 15.9 74 356-458 56-132 (353)
171 KOG0289|consensus 68.4 1.9E+02 0.0042 31.9 19.2 71 430-530 392-462 (506)
172 KOG0285|consensus 67.4 1.8E+02 0.004 31.2 25.3 120 177-329 149-277 (460)
173 KOG1539|consensus 66.9 84 0.0018 37.3 13.0 91 113-210 430-526 (910)
174 KOG1407|consensus 65.6 1.7E+02 0.0037 30.2 16.9 27 224-250 67-93 (313)
175 KOG0640|consensus 65.5 1.9E+02 0.004 30.6 13.9 110 182-317 175-289 (430)
176 KOG0293|consensus 65.3 2.2E+02 0.0047 31.3 22.3 68 295-383 273-345 (519)
177 KOG2055|consensus 64.2 2.4E+02 0.0052 31.4 18.5 24 423-446 478-502 (514)
178 PF07202 Tcp10_C: T-complex pr 61.8 1.6E+02 0.0035 28.6 19.5 30 583-614 37-66 (179)
179 KOG1538|consensus 61.7 3.2E+02 0.0069 32.0 23.9 86 181-275 14-101 (1081)
180 KOG0273|consensus 60.2 2.8E+02 0.0062 30.9 25.9 36 293-328 237-274 (524)
181 KOG0284|consensus 59.7 1.6E+02 0.0035 32.2 12.5 105 134-250 102-208 (464)
182 KOG2096|consensus 59.6 2.4E+02 0.0052 29.9 22.1 69 692-761 331-400 (420)
183 PTZ00421 coronin; Provisional 59.2 3.2E+02 0.007 31.3 27.7 30 430-462 171-201 (493)
184 KOG0315|consensus 58.3 2.2E+02 0.0048 29.1 25.2 57 502-558 169-247 (311)
185 PF09318 DUF1975: Domain of un 57.8 1.7E+02 0.0036 28.8 12.3 38 694-749 134-171 (203)
186 KOG0278|consensus 57.7 2.3E+02 0.0049 29.1 15.1 61 433-525 230-292 (334)
187 KOG0276|consensus 57.0 3.7E+02 0.008 31.3 33.7 67 180-249 98-168 (794)
188 KOG0271|consensus 56.3 3E+02 0.0065 30.0 19.6 67 430-529 118-186 (480)
189 KOG0286|consensus 56.2 2.6E+02 0.0057 29.3 27.3 67 430-527 189-256 (343)
190 KOG0643|consensus 52.9 2.8E+02 0.0062 28.7 22.1 27 498-524 285-311 (327)
191 PF08662 eIF2A: Eukaryotic tra 52.2 2.4E+02 0.0052 27.7 13.7 19 430-448 146-164 (194)
192 PRK01029 tolB translocation pr 51.7 3.9E+02 0.0085 29.9 23.3 18 512-529 165-182 (428)
193 PF00930 DPPIV_N: Dipeptidyl p 49.7 3.7E+02 0.008 29.1 19.9 59 696-755 284-348 (353)
194 COG5276 Uncharacterized conser 49.3 3.4E+02 0.0075 28.6 20.5 130 190-371 137-275 (370)
195 PF07494 Reg_prop: Two compone 48.4 31 0.00067 21.3 3.3 18 181-198 6-23 (24)
196 KOG0268|consensus 47.6 2.8E+02 0.006 30.0 11.8 28 502-529 274-301 (433)
197 COG3490 Uncharacterized protei 47.5 3.6E+02 0.0077 28.4 12.3 21 500-520 225-245 (366)
198 KOG0301|consensus 47.5 5.3E+02 0.012 30.3 21.7 111 181-328 103-218 (745)
199 COG4247 Phy 3-phytase (myo-ino 47.4 3.4E+02 0.0073 28.0 17.4 99 149-251 122-233 (364)
200 PF14339 DUF4394: Domain of un 47.0 3.3E+02 0.0072 27.8 15.0 129 296-466 31-171 (236)
201 KOG2110|consensus 46.6 1.1E+02 0.0025 32.8 9.0 63 355-452 177-243 (391)
202 PRK06655 flgD flagellar basal 45.6 1.2E+02 0.0025 30.9 8.8 52 22-78 114-167 (225)
203 PF14977 FAM194: FAM194 protei 45.1 2.1E+02 0.0045 28.6 10.2 75 683-770 15-94 (208)
204 PRK04043 tolB translocation pr 44.4 5E+02 0.011 29.1 23.0 16 512-527 169-184 (419)
205 TIGR02608 delta_60_rpt delta-6 44.0 39 0.00085 25.9 3.8 34 182-215 3-45 (55)
206 KOG0293|consensus 42.2 5.1E+02 0.011 28.6 21.6 185 181-451 226-419 (519)
207 KOG2919|consensus 42.2 4.6E+02 0.0099 28.0 21.1 82 640-725 291-373 (406)
208 KOG0283|consensus 41.8 6.8E+02 0.015 29.9 18.3 29 222-250 410-438 (712)
209 PF02191 OLF: Olfactomedin-lik 40.8 4.3E+02 0.0093 27.3 15.0 27 351-377 218-244 (250)
210 TIGR02608 delta_60_rpt delta-6 40.1 59 0.0013 24.9 4.3 35 295-329 4-47 (55)
211 smart00108 B_lectin Bulb-type 39.1 1.5E+02 0.0033 26.2 7.7 54 503-560 55-108 (114)
212 PRK12813 flgD flagellar basal 38.0 1.6E+02 0.0034 29.9 8.3 50 22-78 112-162 (223)
213 TIGR03300 assembly_YfgL outer 37.2 5.7E+02 0.012 27.7 29.4 27 357-385 61-89 (377)
214 KOG0306|consensus 35.6 8.4E+02 0.018 29.2 14.9 69 429-530 594-664 (888)
215 KOG3567|consensus 35.5 50 0.0011 36.6 4.5 49 200-250 446-494 (501)
216 KOG0289|consensus 35.0 6.7E+02 0.015 27.9 22.5 70 430-530 350-421 (506)
217 PF08553 VID27: VID27 cytoplas 34.4 9.4E+02 0.02 29.4 18.6 62 431-525 581-643 (794)
218 KOG0310|consensus 34.3 7.1E+02 0.015 28.0 20.7 64 182-250 71-138 (487)
219 PRK05842 flgD flagellar basal 34.0 2E+02 0.0044 30.3 8.6 51 33-83 160-215 (295)
220 KOG0643|consensus 33.3 5.8E+02 0.013 26.6 22.6 34 425-459 285-318 (327)
221 KOG0273|consensus 32.7 7.6E+02 0.016 27.8 29.5 133 181-370 237-377 (524)
222 KOG0645|consensus 32.1 6.1E+02 0.013 26.5 25.0 153 293-528 16-178 (312)
223 KOG1408|consensus 31.8 3.7E+02 0.0081 31.7 10.6 35 354-389 599-637 (1080)
224 KOG3881|consensus 31.4 4.8E+02 0.01 28.5 10.8 102 222-369 203-307 (412)
225 KOG3881|consensus 30.1 4.3E+02 0.0094 28.8 10.2 72 353-463 204-280 (412)
226 PRK12812 flgD flagellar basal 29.9 1.6E+02 0.0036 30.4 7.1 52 35-86 137-191 (259)
227 smart00284 OLF Olfactomedin-li 29.9 6.4E+02 0.014 26.1 13.5 26 353-378 225-250 (255)
228 PRK12633 flgD flagellar basal 29.6 1.3E+02 0.0028 30.6 6.2 44 35-78 125-170 (230)
229 PRK13616 lipoprotein LpqB; Pro 29.5 9.9E+02 0.022 28.1 24.5 35 430-466 499-533 (591)
230 cd00028 B_lectin Bulb-type man 29.0 2.5E+02 0.0054 24.8 7.4 55 503-561 56-110 (116)
231 KOG0646|consensus 28.3 8.8E+02 0.019 27.2 19.5 28 502-529 279-308 (476)
232 PRK04043 tolB translocation pr 28.2 8.8E+02 0.019 27.1 27.5 12 653-664 325-336 (419)
233 PF15416 DUF4623: Domain of un 27.5 2.3E+02 0.0049 30.3 7.4 81 221-319 182-271 (442)
234 PF12930 DUF3836: Family of un 27.3 55 0.0012 30.2 2.7 16 650-665 64-79 (132)
235 KOG1517|consensus 26.7 1.4E+03 0.03 28.9 15.3 159 181-378 1066-1237(1387)
236 PTZ00421 coronin; Provisional 26.1 1E+03 0.022 27.2 31.6 109 182-321 78-201 (493)
237 PF06661 VirE3: VirE3; InterP 26.0 17 0.00038 37.0 -0.8 17 646-662 106-122 (317)
238 PRK09619 flgD flagellar basal 25.4 1.7E+02 0.0037 29.5 6.2 59 2-72 98-157 (218)
239 KOG2096|consensus 24.8 8.7E+02 0.019 25.9 24.2 68 181-249 88-160 (420)
240 KOG2919|consensus 24.6 8.9E+02 0.019 26.0 20.4 28 351-379 158-186 (406)
241 TIGR03075 PQQ_enz_alc_DH PQQ-d 23.6 1.2E+03 0.025 27.0 32.7 301 190-589 69-521 (527)
242 smart00284 OLF Olfactomedin-li 22.8 8.6E+02 0.019 25.2 15.9 29 431-460 131-161 (255)
243 PF14583 Pectate_lyase22: Olig 22.5 1.1E+03 0.023 26.1 19.0 233 186-521 42-303 (386)
244 KOG0310|consensus 22.0 1.2E+03 0.025 26.4 22.7 148 132-319 72-225 (487)
245 KOG1408|consensus 21.8 6.5E+02 0.014 29.9 10.2 21 54-74 337-357 (1080)
246 PRK12634 flgD flagellar basal 21.2 2.3E+02 0.005 28.6 6.2 43 37-79 120-164 (221)
247 PF13570 PQQ_3: PQQ-like domai 20.9 1.5E+02 0.0033 20.5 3.5 22 356-379 16-38 (40)
248 KOG3567|consensus 20.8 84 0.0018 34.9 3.0 72 427-521 167-239 (501)
249 KOG2280|consensus 20.8 1.5E+03 0.033 27.2 16.0 71 291-384 43-116 (829)
250 KOG0275|consensus 20.1 1.1E+03 0.023 25.2 12.3 109 132-249 352-464 (508)
251 KOG1538|consensus 20.1 1.5E+03 0.032 26.8 19.6 131 353-526 14-158 (1081)
252 TIGR02919 accessory Sec system 20.0 1.3E+03 0.027 26.1 13.5 21 729-749 131-151 (438)
No 1
>KOG4659|consensus
Probab=100.00 E-value=7e-151 Score=1255.97 Aligned_cols=586 Identities=40% Similarity=0.708 Sum_probs=565.4
Q ss_pred CcccCCCCeEEEEecCCCCCCceEEEEeecCCCCCCCccEEEEEEEEceeEEEEEeeCCCCceEEEEEecccccCceeee
Q psy4832 1 SIQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVEIEGSVHTKTYEADPNLTHVFTWNKRNVYKQKVYG 80 (770)
Q Consensus 1 ~~~i~gt~~~l~y~s~r~~g~~~~~~~~~~~~~~p~~l~~v~~~~~v~g~~~~~~~~~~p~~~~~~~W~~~d~y~~~v~g 80 (770)
|||||||+++|+|+|||+|||||+|+|.||+++||.+|+||||+|+|||++|+|+|+|+|||+|||+|||+|+|||+|||
T Consensus 186 sl~ipgt~vrLvY~SsRs~gy~St~ki~lt~d~vp~~l~kVHl~i~ieG~lf~r~f~a~~nl~ytfaWdk~n~YrQrv~G 265 (1899)
T KOG4659|consen 186 SLPIPGTDVRLVYDSSRSPGYPSTMKIGLTYDRVPKELRKVHLNIRIEGRLFDRVFAARPNLTYTFAWDKMNAYRQRVYG 265 (1899)
T ss_pred hccCCCCceEEEEecccCCCcchheEEeecccccccceEEEEEEEEEeeEEeeeeccCCCCcEEEEEecccchhhheeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeeeEecccce-eEEeEEEEEeecccccccCCCCCccceeeeeecCCCeEEECCCccEEecccCCCeEEEEecc
Q psy4832 81 VAQCKISIGYEHESCSS-IVWETQTCTLQGFDVDISDIGGWSLDVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGT 159 (770)
Q Consensus 81 ~~~a~v~~g~~y~~~~~-~~w~~~~~~l~g~~~~~~~~ggw~l~~~~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~ 159 (770)
+++|+|+|||||+.|.+ ++|++||++|+|++|+.|++|+|+||+||+||+.+||++||+|+|+|+++ +|++|+++||+
T Consensus 266 l~~avV~VGyeY~~C~~~ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGnG~n~~it~-~Prvitt~mgd 344 (1899)
T KOG4659|consen 266 LVPAVVRVGYEYQGCDDTIVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGNGGNRLITE-EPRVITTAMGD 344 (1899)
T ss_pred cceeEEEeeeEecCCCceeeeeeehhhhccccccchhcCcceeecceecccccCeEEecCCcceEeec-CCceEEEeccC
Confidence 99999999999999999 89999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEE
Q psy4832 160 GLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYIS 239 (770)
Q Consensus 160 G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvs 239 (770)
|.+|++.|+.|+|.+...+|.+|.++|..|||+|||+|+|.||||.++|++++++.++.+..++.++||++|.+|.|||+
T Consensus 345 G~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvS 424 (1899)
T KOG4659|consen 345 GHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVS 424 (1899)
T ss_pred cccccccCCCCCCccccceeeceeeEEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred eCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCCeEEECCC
Q psy4832 240 DAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTNIRVVSPE 319 (770)
Q Consensus 240 d~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~Ir~id~~ 319 (770)
|+.+++|+|+.++.. +|+.+|++++||+|++|+|+++. ||||+.|.+|+|.+|+|||||++|+|||+|+.+||++|.+
T Consensus 425 dp~s~qv~rv~sl~~-~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t~IR~iD~~ 502 (1899)
T KOG4659|consen 425 DPLSKQVWRVSSLEP-QDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGNLYFADGTRIRVIDTT 502 (1899)
T ss_pred CCCcceEEEeccCCc-cccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEccCCcEEEecccEEEEeccC
Confidence 999999999998887 79999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcCCCcEEEEecCCCCCCCCCCC
Q psy4832 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTNDLKVKIVAGIPLHCRTGDKD 399 (770)
Q Consensus 320 G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~~G~v~~vaG~~~~~~~~~~~ 399 (770)
|.|++++|+.... +.|++|+..+...+.+|+||+.||++|+++.|||.|+|.|++|+++++|++++|+|.+|......
T Consensus 503 giIstlig~~~~~--~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t 580 (1899)
T KOG4659|consen 503 GIISTLIGTTPDQ--HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANAT 580 (1899)
T ss_pred ceEEEeccCCCCc--cCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCc
Confidence 9999999998887 89999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCC
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNT 479 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~ 479 (770)
.. ..+.|.++.|..|.+|||+++|.|||||++.+|||+||++.+||+|..+||.. +.|+|
T Consensus 581 ~~----------------~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~----S~C~C 640 (1899)
T KOG4659|consen 581 SS----------------ASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAK----SPCSC 640 (1899)
T ss_pred hh----------------hhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCC----CCCCc
Confidence 22 33778999999999999999999999999999999999999999999999988 89999
Q ss_pred C---CCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCcccCCCCcEEEeCCCCCcEEEEecC
Q psy4832 480 T---NCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRY 556 (770)
Q Consensus 480 ~---~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~~~~~~g~~~i~~~~~~e~yvfd~~ 556 (770)
. +|+||+ .++..|+.|+|++|++|||+|||.+||||.+|.||+++....|..++...|+|++|+.+|+|+||..
T Consensus 641 ~~~~~cdcfs---~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~ 717 (1899)
T KOG4659|consen 641 DVAACCDCFS---LRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRH 717 (1899)
T ss_pred ccccCCcccc---ccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhhhcccccCCCceeeccCcccceeEEEecc
Confidence 6 499996 6888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEcCCCCCcEEEEEecCCCCCCceEEEECCCCCEEEEEEcCCCcce-EeccCCc
Q psy4832 557 GQHITTRDMTSGKPRYSFLYSKNTSFGKLSTITDASGNKINFLRDYSNVAQ-LQWPTGL 614 (770)
Q Consensus 557 G~~~~t~d~~tg~~~y~~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~~~-~~~p~G~ 614 (770)
|+|+.|+++.||.+.|+|+|..+++.|.|++++|++|+.+++.||++.+.. ++.|.|+
T Consensus 718 GqH~sTvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~l~ilrd~~s~~~~~~~~~~q 776 (1899)
T KOG4659|consen 718 GQHSSTVSLITGETFYNFTYQVDSSIGMLSEITDASGNVLRVLRDNDSLFDLETTLGGQ 776 (1899)
T ss_pred ceeeeeEEEEeceeEEEEEEecCCCcchhhhhhhcCCcEEEEEecCCCCcceeecCCCc
Confidence 999999999999999999999998999999999999999999999987766 5667763
No 2
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=8.2e-27 Score=283.32 Aligned_cols=301 Identities=20% Similarity=0.258 Sum_probs=221.9
Q ss_pred cccccCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEecc-C----------cccccceeEEEEeCCCCcEEEEeC
Q psy4832 176 DARLLTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQL-S----------ATQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 176 ~~~l~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~-~----------~~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
...|..|.++++|+ +|+|||+|. ++|++++.+|++...++. + ...+..|.||++++.++.|||+|.
T Consensus 564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt 643 (1057)
T PLN02919 564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT 643 (1057)
T ss_pred cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence 56789999999998 688999998 599999999998876654 1 235788999999986667999999
Q ss_pred CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCc-ccccccccCcceEEEcc-CCcEEEEeCCC--eEEEC
Q psy4832 242 EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNG-PALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVS 317 (770)
Q Consensus 242 ~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g-~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id 317 (770)
.+++|++++. .++.+.+++|+|.. +....++ ......|+.|.+|++++ +|.|||+|..+ |++++
T Consensus 644 ~n~~Ir~id~------~~~~V~tlag~G~~------g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d 711 (1057)
T PLN02919 644 ENHALREIDF------VNETVRTLAGNGTK------GSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYN 711 (1057)
T ss_pred CCceEEEEec------CCCEEEEEeccCcc------cCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEE
Confidence 9999999952 35678888887654 2222222 22334589999999999 78899999876 99999
Q ss_pred C-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC-CcEEEEecC-CC
Q psy4832 318 P-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND-LKVKIVAGI-PL 391 (770)
Q Consensus 318 ~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~-G~v~~vaG~-~~ 391 (770)
. +|.+.++.|.+.... ..+.......|..|.||+++| ++ .|||+| +++|++++.+ +.++.++|. +.
T Consensus 712 ~~~g~v~~~~G~G~~~~-------~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 712 ISDGVTRVFSGDGYERN-------LNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCCCeEEEEecCCcccc-------CCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 6 467777776543211 111223345688999999999 65 499999 6899999964 566666542 11
Q ss_pred CCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCc
Q psy4832 392 HCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRW 470 (770)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~ 470 (770)
...... .+......+....|..|.||+++++|+|||||+.+++ |+++++ ++.+.+++|.+
T Consensus 784 ~~~~l~----------------~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r---IrviD~~tg~v~tiaG~G 844 (1057)
T PLN02919 784 FSDNLF----------------KFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK---IKKLDPATKRVTTLAGTG 844 (1057)
T ss_pred cCcccc----------------cccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE---EEEEECCCCeEEEEeccC
Confidence 100000 0000112233456889999999999999999999986 788887 57788888866
Q ss_pred cCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 471 QSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
..+. . ++.+..+.|+.|.||+++++|.|||+|.+|++|+.+....
T Consensus 845 ~~G~---------------~-dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 845 KAGF---------------K-DGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred CcCC---------------C-CCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 4332 1 2335678899999999999999999999999999997654
No 3
>KOG4659|consensus
Probab=99.94 E-value=4.8e-24 Score=241.28 Aligned_cols=434 Identities=16% Similarity=0.171 Sum_probs=283.9
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEE
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLA 298 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIa 298 (770)
..+..|..||..| +|.|||.|. +-|+|| -++|++..+..-+.. .-.+-.-||
T Consensus 362 ~~L~aPvala~a~-DGSl~VGDf--NyIRRI-------~~dg~v~tIl~L~~t------------------~~sh~Yy~A 413 (1899)
T KOG4659|consen 362 ISLFAPVALAYAP-DGSLIVGDF--NYIRRI-------SQDGQVSTILTLGLT------------------DTSHSYYIA 413 (1899)
T ss_pred ceeeceeeEEEcC-CCcEEEccc--hheeee-------cCCCceEEEEEecCC------------------CccceeEEE
Confidence 4577899999997 999999998 589999 688998887754321 122456899
Q ss_pred Ecc-CCcEEEEeCCC--eEEEC------CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 299 IKA-DKTMFIADGTN--IRVVS------PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 299 vd~-~G~lYvaD~~~--Ir~id------~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
++| +|.|||+|... |+++. +.+....++|.|..|..+--. |+++..+..++|.+|.|||||. .|.||++
T Consensus 414 vsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk-~g~lYfa 491 (1899)
T KOG4659|consen 414 VSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDK-MGNLYFA 491 (1899)
T ss_pred ecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEcc-CCcEEEe
Confidence 999 99999999876 66653 345677899999988544333 9999999999999999999998 9999999
Q ss_pred eCCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCC
Q psy4832 370 DDRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDA 448 (770)
Q Consensus 370 D~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~ 448 (770)
|.-+|++||.+|.|+++.|...... .|.. +.......+-+|.+|+.+||+| ++.|||.|..
T Consensus 492 D~t~IR~iD~~giIstlig~~~~~~-----~p~~------------C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n- 553 (1899)
T KOG4659|consen 492 DGTRIRVIDTTGIISTLIGTTPDQH-----PPRT------------CAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN- 553 (1899)
T ss_pred cccEEEEeccCceEEEeccCCCCcc-----Cccc------------cccccchhheeeecccceeecCCCCeEEEeecc-
Confidence 9999999999999999998643321 0100 0111123456789999999999 8899999974
Q ss_pred CceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 449 RKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 449 ~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
.|.++++++++..++|.+ .-|+..+...+ +.-++..+.|-.|.+|||.++|.|||++....||-+++
T Consensus 554 ----vvlrit~~~rV~Ii~GrP----~hC~~a~~t~~-----~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr 620 (1899)
T KOG4659|consen 554 ----VVLRITVVHRVRIILGRP----THCDLANATSS-----ASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVR 620 (1899)
T ss_pred ----eEEEEccCccEEEEcCCc----cccccCCCchh-----hhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheE
Confidence 588999999999999988 44544332222 11345566788899999999999999998775555443
Q ss_pred c---CCcc---cCC---------------------------CCcEEEeCCCCCcEEEEecCCceEEEEcCCCCCcEEEEE
Q psy4832 529 H---YLPT---HDE---------------------------HGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFL 575 (770)
Q Consensus 529 ~---~~~~---~~~---------------------------~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg~~~y~~~ 575 (770)
+ .... .+. ...+.++...++.+|+.|...-.++++...-- .
T Consensus 621 ~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rIr~Vs~~~~------~ 694 (1899)
T KOG4659|consen 621 KLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRIRKVSARMA------K 694 (1899)
T ss_pred EeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhhhhhhhccc------c
Confidence 3 2210 000 11344555556678888765555554433211 1
Q ss_pred ecCCCCCCceEEEECCCCCEEEEEEcCCCcceEeccCCccccCCCCcceeecceee--eee----cCceEEEEEecCCce
Q psy4832 576 YSKNTSFGKLSTITDASGNKINFLRDYSNVAQLQWPTGLALSPLDDSLHFIDDRVI--FKL----TNDLKIRALKKGRFD 649 (770)
Q Consensus 576 Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~~~~~~p~G~~~~~~d~~~~~~~~~~~--~~~----~~g~l~~~~~~~g~~ 649 (770)
|+. -+..++++++-+.++.....+.-.. +...+.++.. |+| ..|+|.+.++.+|..
T Consensus 695 ~~~----sr~YEi~~p~~QE~Y~Fnr~GqH~s--------------TvsliTget~ynFtY~v~ss~~~lsei~~a~Gn~ 756 (1899)
T KOG4659|consen 695 YDG----SRTYEITDPERQEKYTFNRHGQHSS--------------TVSLITGETFYNFTYQVDSSIGMLSEITDASGNV 756 (1899)
T ss_pred cCC----CceeeccCcccceeEEEeccceeee--------------eEEEEeceeEEEEEEecCCCcchhhhhhhcCCcE
Confidence 443 3555666666665444432221111 1122222222 233 377777777777777
Q ss_pred EEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccC-CcEeEEE-ecCcEEEEEeCCCCCeE
Q psy4832 650 VTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDER-GFLIFAQ-MFRHKYYIATDQCGTPV 727 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~-G~l~~~~-~~~~~~~~~~d~~G~~~ 727 (770)
++-.-|..+-.-..+.+.|+++...=+.++...+| -.+ +.....++|+-. |-|.... ..+.++.|.||+.|+++
T Consensus 757 l~ilrd~~s~~~~~~~~~~q~~~l~~~~~g~L~~v---St~-d~~~~~~ty~g~tglL~Tk~d~tg~~~~yeYDe~Grlt 832 (1899)
T KOG4659|consen 757 LRVLRDNDSLFDLETTLGGQTTLLMSAYDGTLEQV---STR-DATSRDATYLGYTGLLLTKRDDTGTAVVYEYDEYGRLT 832 (1899)
T ss_pred EEEEecCCCCcceeecCCCcEEEEEEecCCceeEe---ccC-CCccceeeeeccccceeeeecccceEEEEcccccccee
Confidence 77777777766677777777755555555433222 222 444455555543 2222222 33555555666666666
Q ss_pred EEEcCCCCEEEEEE
Q psy4832 728 MVFNQYGETVREIM 741 (770)
Q Consensus 728 ~~~d~~G~~v~~~~ 741 (770)
-++-+.|.++.+.+
T Consensus 833 ~~~~ptg~v~~ele 846 (1899)
T KOG4659|consen 833 GAKRPTGYVRLELE 846 (1899)
T ss_pred ccccCcceEEecce
Confidence 66666666543433
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.93 E-value=6e-24 Score=258.42 Aligned_cols=294 Identities=21% Similarity=0.234 Sum_probs=211.9
Q ss_pred eeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCcc-----CCCCCcccccccccCceEEEEcCCCC-EEEEeC--
Q psy4832 127 HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLV-----CKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-- 198 (770)
Q Consensus 127 ~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~-----~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-- 198 (770)
.|.+|.|++.+.++.++||++..+++|.++.-+|...... +...+|....+.|..|.+|+++++|+ |||+|.
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 4788999999987778999998888898887666542111 11123455678999999999999765 899998
Q ss_pred ceEEEEcCC-CcEEEEeccCc-------------ccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEE
Q psy4832 199 NLVRRLTPE-GNVFTVLQLSA-------------TQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV 264 (770)
Q Consensus 199 ~~I~~i~~~-G~v~~~~~~~~-------------~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~ 264 (770)
++|++++.. +.+.++.+.+. ..+..|++|+++|.++.|||+|.++++|++++. .++.+.+
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~------~~g~v~~ 719 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI------SDGVTRV 719 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC------CCCeEEE
Confidence 599999975 55556654321 126789999999888999999999999999953 3566667
Q ss_pred EECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCcc
Q psy4832 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNC 340 (770)
Q Consensus 265 vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~ 340 (770)
++|.|.. ...++.....+.|..|.||+++++|. |||+|..+ |+++|.+ |.+..++|.........-...
T Consensus 720 ~~G~G~~-------~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 720 FSGDGYE-------RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred EecCCcc-------ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 7776532 11123334456788999999999886 99999876 9999975 555555542211000000001
Q ss_pred CCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccC
Q psy4832 341 HRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQD 417 (770)
Q Consensus 341 ~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (770)
+..+....+.|..|.+|++++ +|+|||+| +++|++++++ +.+.+++|.+..... +
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~---d------------------ 850 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK---D------------------ 850 (1057)
T ss_pred CCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC---C------------------
Confidence 112333456799999999999 99999999 7999999975 678888876543221 1
Q ss_pred CcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC
Q psy4832 418 DSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST 460 (770)
Q Consensus 418 ~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~ 460 (770)
..+..+.|..|.||+++++|+|||+|+.+++ |++++.+
T Consensus 851 --G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~---Irvid~~ 888 (1057)
T PLN02919 851 --GKALKAQLSEPAGLALGENGRLFVADTNNSL---IRYLDLN 888 (1057)
T ss_pred --CcccccccCCceEEEEeCCCCEEEEECCCCE---EEEEECC
Confidence 1124567889999999999999999999986 6777753
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.77 E-value=1.7e-16 Score=164.59 Aligned_cols=219 Identities=22% Similarity=0.389 Sum_probs=157.0
Q ss_pred ceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
|.++++++ +|.||++|. ++|.++++++....++.. ..|.+++++..++.|||++.....++ + -.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-----~~~~G~~~~~~~g~l~v~~~~~~~~~--d------~~ 68 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-----PGPNGMAFDRPDGRLYVADSGGIAVV--D------PD 68 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-----SSEEEEEEECTTSEEEEEETTCEEEE--E------TT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-----CCCceEEEEccCCEEEEEEcCceEEE--e------cC
Confidence 68899998 999999997 599999999887776643 22999999955899999998655444 3 24
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC----------eEEECCCCcEEEeecC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN----------IRVVSPEGIIHTLIGH 328 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~----------Ir~id~~G~i~t~~g~ 328 (770)
++.++.++..-. ....+..|+++++|++|+|||+|... |.+++++|++..+.
T Consensus 69 ~g~~~~~~~~~~----------------~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~-- 130 (246)
T PF08450_consen 69 TGKVTVLADLPD----------------GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVA-- 130 (246)
T ss_dssp TTEEEEEEEEET----------------TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEE--
T ss_pred CCcEEEEeeccC----------------CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEe--
Confidence 567766663200 01247789999999999999998642 67777777665554
Q ss_pred CCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC--Cc-EE---EEecCCCCCCCCCCC
Q psy4832 329 HKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTND--LK-VK---IVAGIPLHCRTGDKD 399 (770)
Q Consensus 329 ~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~--G~-v~---~vaG~~~~~~~~~~~ 399 (770)
..+..|+||+++| ++ .|||+| .++|++++.+ +. +. +++..+
T Consensus 131 --------------------~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~--------- 180 (246)
T PF08450_consen 131 --------------------DGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP--------- 180 (246)
T ss_dssp --------------------EEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S---------
T ss_pred --------------------cCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcC---------
Confidence 2377899999999 66 599999 5899999954 32 22 222110
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCC
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNT 479 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~ 479 (770)
.....|.||++|++|+||||+..+++ |.+++++|++....-.+
T Consensus 181 -------------------------~~~g~pDG~~vD~~G~l~va~~~~~~---I~~~~p~G~~~~~i~~p--------- 223 (246)
T PF08450_consen 181 -------------------------GGPGYPDGLAVDSDGNLWVADWGGGR---IVVFDPDGKLLREIELP--------- 223 (246)
T ss_dssp -------------------------SSSCEEEEEEEBTTS-EEEEEETTTE---EEEEETTSCEEEEEE-S---------
T ss_pred -------------------------CCCcCCCcceEcCCCCEEEEEcCCCE---EEEECCCccEEEEEcCC---------
Confidence 01135999999999999999998875 78899999976654222
Q ss_pred CCCcccccCccCcccccceecCCeeEEEEc-CC-CcEEEEc
Q psy4832 480 TNCAEFEKNSKETLLTSTARFTSISALSVS-PD-GVVNVAD 518 (770)
Q Consensus 480 ~~~~~~~~~~~d~~~~~~~~l~~P~giav~-~d-G~lyvaD 518 (770)
...|+.+++. ++ +.|||+.
T Consensus 224 --------------------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 --------------------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------------------SSSEEEEEEESTTSSEEEEEE
T ss_pred --------------------CCCEEEEEEECCCCCEEEEEe
Confidence 1358899994 44 5889875
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.74 E-value=8.1e-16 Score=159.59 Aligned_cols=196 Identities=29% Similarity=0.413 Sum_probs=142.2
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc-cC
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK-AD 302 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd-~~ 302 (770)
|.++++++.++.||++|..+++|++++ +.+....+.. +..|.|++++ ++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~-------~~~~~~~~~~-----------------------~~~~~G~~~~~~~ 51 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVD-------PDTGEVEVID-----------------------LPGPNGMAFDRPD 51 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE-------TTTTEEEEEE-----------------------SSSEEEEEEECTT
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEE-------CCCCeEEEEe-----------------------cCCCceEEEEccC
Confidence 679999988999999999999999994 4444333221 2248899999 78
Q ss_pred CcEEEEeCCCeEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC----------
Q psy4832 303 KTMFIADGTNIRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD---------- 371 (770)
Q Consensus 303 G~lYvaD~~~Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~---------- 371 (770)
|.|||++...++++|. .|++..++.... ....+..|+++++++ +|+|||+|.
T Consensus 52 g~l~v~~~~~~~~~d~~~g~~~~~~~~~~----------------~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 52 GRLYVADSGGIAVVDPDTGKVTVLADLPD----------------GGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp SEEEEEETTCEEEEETTTTEEEEEEEEET----------------TCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGS
T ss_pred CEEEEEEcCceEEEecCCCcEEEEeeccC----------------CCcccCCCceEEEcC-CCCEEEEecCCCccccccc
Confidence 9999999988888884 577777764310 112477899999999 999999982
Q ss_pred CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCc
Q psy4832 372 RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARK 450 (770)
Q Consensus 372 ~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~r 450 (770)
++|++++++++++.+.. .+..|+||+++++|. |||+|+.+++
T Consensus 115 g~v~~~~~~~~~~~~~~-------------------------------------~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 115 GSVYRIDPDGKVTVVAD-------------------------------------GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp EEEEEEETTSEEEEEEE-------------------------------------EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cceEEECCCCeEEEEec-------------------------------------CcccccceEECCcchheeecccccce
Confidence 46999999888766652 256799999999996 9999999997
Q ss_pred eeeEEEEcCCCcEE---EeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 451 VNALRVIDSTGRMF---DFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 451 i~~i~~i~~~G~i~---~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
|.++..-...+++. .++... .....|.||++|++|+|||++..+++|.++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~g~pDG~~vD~~G~l~va~~~~~~I~~~ 210 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFP---------------------------GGPGYPDGLAVDSDGNLWVADWGGGRIVVF 210 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-S---------------------------SSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred eEEEeccccccceeeeeeEEEcC---------------------------CCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence 65443322333232 121100 001359999999999999999988888877
Q ss_pred ecC
Q psy4832 528 QHY 530 (770)
Q Consensus 528 ~~~ 530 (770)
++.
T Consensus 211 ~p~ 213 (246)
T PF08450_consen 211 DPD 213 (246)
T ss_dssp ETT
T ss_pred CCC
Confidence 665
No 7
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.67 E-value=1.5e-14 Score=158.77 Aligned_cols=274 Identities=19% Similarity=0.240 Sum_probs=154.8
Q ss_pred ccccCceEEEEcCCCCEEEEeC--------------ceEEEEcC---CCcEE--EEeccCcccccceeEEEEeCCCCcEE
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--------------NLVRRLTP---EGNVF--TVLQLSATQVSYQYYLALSPADGHLY 237 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--------------~~I~~i~~---~G~v~--~~~~~~~~~~~~p~~lav~p~~g~ly 237 (770)
-.+..|.+|++|++|+|||++. ++|+++.. +|+.. +++ ...+..|.+|++.+ +| ||
T Consensus 11 p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~~-~G-ly 85 (367)
T TIGR02604 11 PLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVAV-GG-VY 85 (367)
T ss_pred CccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEec-CC-EE
Confidence 3578999999999999999983 38888853 56643 444 45678899999995 66 99
Q ss_pred EEeCCCcEEEEEeccCCccCCCCcEEEEEC-CCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC-----
Q psy4832 238 ISDAEKHQILRVLSLESVADPSINWEVAVG-SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT----- 311 (770)
Q Consensus 238 vsd~~~~~I~~i~~~~~~~~~~g~~~~vaG-~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~----- 311 (770)
|++. .+|+++.....--..++..++++. .+.. + ......|++++++++|.|||++..
T Consensus 86 V~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~--------~-------~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 86 VATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ--------I-------NNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred EeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC--------C-------CcccccccCceECCCCCEEEecccCCCce
Confidence 9975 478888532210012234444442 1110 0 011346889999999999998872
Q ss_pred ----------------CeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--CE
Q psy4832 312 ----------------NIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--RV 373 (770)
Q Consensus 312 ----------------~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~ 373 (770)
.|.+++++|....++. ..++.|.||++++ +|+||++|+ +.
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a---------------------~G~rnp~Gl~~d~-~G~l~~tdn~~~~ 206 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVA---------------------HGFQNPYGHSVDS-WGDVFFCDNDDPP 206 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEe---------------------cCcCCCccceECC-CCCEEEEccCCCc
Confidence 1556666653333332 2377899999999 999999996 23
Q ss_pred EEEEcCCCcEEEEecCCCCCCCCCCCCcc-ccccccccc----cccccCCcccccccccCCeeEEEEcC--------CCC
Q psy4832 374 IFKLTNDLKVKIVAGIPLHCRTGDKDKRD-FKDKQSKTK----KSTVQDDSVRASNMDLGSLTALAFSP--------TGD 440 (770)
Q Consensus 374 I~~i~~~G~v~~vaG~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~a~~~~l~~P~giavd~--------~G~ 440 (770)
..++.+-.... -.|.+............ ......... .... ............|.|+++-. .|.
T Consensus 207 ~~~i~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~ 283 (367)
T TIGR02604 207 LCRVTPVAEGG-RNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGV--ETVGDVAGGGTAPCGIAFYRGDALPEEYRGL 283 (367)
T ss_pred eeEEccccccc-ccCCCCCCCcccccccccccccccccccccccccc--cccccccCCCccccEEEEeCCCcCCHHHCCC
Confidence 33333211000 01111100000000000 000000000 0000 00000111234689998862 579
Q ss_pred EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 441 LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 441 lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
+||++...++|.+++ ++++|.. +.+.. ..++.....+.+|..|+++|||.|||+|..
T Consensus 284 ~fv~~~~~~~v~~~~-l~~~g~~--~~~~~--------------------~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~ 340 (367)
T TIGR02604 284 LLVGDAHGQLIVRYS-LEPKGAG--FKGER--------------------PEFLRSNDTWFRPVNVTVGPDGALYVSDWY 340 (367)
T ss_pred EEeeeccCCEEEEEE-eecCCCc--cEeec--------------------CceEecCCCcccccceeECCCCCEEEEEec
Confidence 999999998876664 3444431 11111 112222223567999999999999999943
No 8
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.49 E-value=7.7e-12 Score=134.96 Aligned_cols=283 Identities=22% Similarity=0.292 Sum_probs=153.9
Q ss_pred ccCceEEEEcCCCCEEEEeC-ceEEEEcCCCcE-EEEecc---CcccccceeEEEEeC---CCCcEEEEeCCC-------
Q psy4832 179 LLTPVALTSGPDGSLYVGDF-NLVRRLTPEGNV-FTVLQL---SATQVSYQYYLALSP---ADGHLYISDAEK------- 243 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~-~~I~~i~~~G~v-~~~~~~---~~~~~~~p~~lav~p---~~g~lyvsd~~~------- 243 (770)
|..|++|++.|||.|||++. ++|++++.+|.. ..+... .........+||++| .++.||++-+..
T Consensus 1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 67899999999999999998 699999988887 333332 234456789999998 358999987743
Q ss_pred -cEEEEEeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC---------
Q psy4832 244 -HQILRVLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--------- 312 (770)
Q Consensus 244 -~~I~~i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--------- 312 (770)
.+|.|+......... ...+++. +... .......-.+|+++++|.|||+-+..
T Consensus 81 ~~~v~r~~~~~~~~~~-~~~~~l~~~~p~----------------~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~ 143 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDL-SSEEVLVTGLPD----------------TSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDP 143 (331)
T ss_dssp EEEEEEEEEETTSCEE-EEEEEEEEEEES-----------------CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCST
T ss_pred ceeeEEEeccCCcccc-ccceEEEEEeCC----------------CCCCCCCCccccCCCCCcEEEEeCCCCCccccccc
Confidence 577777543220000 1122222 2110 01123345689999999999984321
Q ss_pred ------eEEECCCCcEEEeecCCCCCCCcCCCcc--CCCcccccccccCcceEEEeCCCCeEEEEeC-----CEEEEEcC
Q psy4832 313 ------IRVVSPEGIIHTLIGHHKHHNIWSPFNC--HRSFPASTAQLQWPTGLALSPLDDSLHFIDD-----RVIFKLTN 379 (770)
Q Consensus 313 ------Ir~id~~G~i~t~~g~~~~~~~~~p~~~--~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~-----~~I~~i~~ 379 (770)
|.+++++|.+.. . .|... ......-...|++|.+++++|.+|.||++|+ ..|.+|.+
T Consensus 144 ~~~~G~ilri~~dG~~p~---d-------nP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~ 213 (331)
T PF07995_consen 144 NSLRGKILRIDPDGSIPA---D-------NPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP 213 (331)
T ss_dssp TSSTTEEEEEETTSSB-T---T-------STTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T
T ss_pred ccccceEEEecccCcCCC---C-------CccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc
Confidence 556666654211 0 11110 0112233556899999999994499999993 24555543
Q ss_pred CCcEEEEecCCCCCCCCCC-CCccccccccccccccccCCcccccccccCCeeEEEEcC-------CCCEEEEeCCCCce
Q psy4832 380 DLKVKIVAGIPLHCRTGDK-DKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-------TGDLYIADIDARKV 451 (770)
Q Consensus 380 ~G~v~~vaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-------~G~lyVaD~~~~ri 451 (770)
.+. .|.|........ +.+.... ..+..+. ... .....-..|.|++|-. .|.++|++...++|
T Consensus 214 G~n----YGWP~~~~~~~~~~~~~~~~----~~~~~~~-~P~-~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i 283 (331)
T PF07995_consen 214 GGN----YGWPYCEGGPKYSGPPIGDA----PSCPGFV-PPV-FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRI 283 (331)
T ss_dssp T-B------TTTBSSSCSTTSS-ECTG----SS-TTS----S-EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEE
T ss_pred CCc----CCCCCCcCCCCCCCCccccc----cCCCCcC-ccc-eeecCccccCceEEECCccCccccCcEEEecCCCCEE
Confidence 321 233331110000 0000000 0000000 000 0111125699999852 57899999998887
Q ss_pred eeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecC-CeeEEEEcCCCcEEEEcCCCceEEe
Q psy4832 452 NALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFT-SISALSVSPDGVVNVADQGSLHILA 526 (770)
Q Consensus 452 ~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-~P~giav~~dG~lyvaD~~~~~I~~ 526 (770)
.++.. +.++.+....- ++ ..+. .|.+|+++|||.|||+|..+++|+|
T Consensus 284 ~~~~~-~~~~~~~~~~~------------------------~~---~~~~~r~~~v~~~pDG~Lyv~~d~~G~iyR 331 (331)
T PF07995_consen 284 WRLDL-DEDGSVTEEEE------------------------FL---GGFGGRPRDVAQGPDGALYVSDDSDGKIYR 331 (331)
T ss_dssp EEEEE-ETTEEEEEEEE------------------------EC---TTSSS-EEEEEEETTSEEEEEE-TTTTEEE
T ss_pred EEEee-ecCCCccceEE------------------------cc---ccCCCCceEEEEcCCCeEEEEECCCCeEeC
Confidence 76655 55555322110 00 0122 6999999999999999988888875
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.44 E-value=6e-11 Score=117.15 Aligned_cols=237 Identities=16% Similarity=0.212 Sum_probs=164.4
Q ss_pred cCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 180 LTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
..|..|+.++||.+|+++. +.|-++|+. |++.++. ...-.+|.+|.+.| +|..||+|.++ .|.|++.
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp---Lg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dp----- 131 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP---LGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDP----- 131 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEe---cCCCCCCceEEECC-CCCeeEecCcc-eeEEecC-----
Confidence 4689999999999999987 589999974 8887764 23456899999998 99999999987 9999942
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCc
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIW 335 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~ 335 (770)
.+..++.+-=..++ ++ .+-+-..+|+.|+|||+.... --++|+...+..++....
T Consensus 132 -kt~evt~f~lp~~~---------a~---------~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----- 187 (353)
T COG4257 132 -KTLEVTRFPLPLEH---------AD---------ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----- 187 (353)
T ss_pred -cccceEEeeccccc---------CC---------CcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----
Confidence 14555554322111 11 123456889999999998754 446777644434442221
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecCCCCCCCCCCCCcccccccccccc
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKK 412 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~ 412 (770)
=..|.||++.| +|++|++. .+.|-+|++ ++.-.++. .|.
T Consensus 188 ---------------G~gpyGi~atp-dGsvwyaslagnaiaridp~~~~aev~p-~P~--------------------- 229 (353)
T COG4257 188 ---------------GGGPYGICATP-DGSVWYASLAGNAIARIDPFAGHAEVVP-QPN--------------------- 229 (353)
T ss_pred ---------------CCCCcceEECC-CCcEEEEeccccceEEcccccCCcceec-CCC---------------------
Confidence 12589999999 99999997 688999985 34322221 110
Q ss_pred ccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcE-EEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 413 STVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 413 ~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
..-..-..|-.|+.|.++++++.+.+ +.++++.-.. ....
T Consensus 230 ------------~~~~gsRriwsdpig~~wittwg~g~---l~rfdPs~~sW~eyp------------------------ 270 (353)
T COG4257 230 ------------ALKAGSRRIWSDPIGRAWITTWGTGS---LHRFDPSVTSWIEYP------------------------ 270 (353)
T ss_pred ------------cccccccccccCccCcEEEeccCCce---eeEeCcccccceeee------------------------
Confidence 00122366788999999999999986 5667764331 1110
Q ss_pred cccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 492 TLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
++... -.|.++-||.-|.+|.+|...+.|.++++..
T Consensus 271 -LPgs~---arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 271 -LPGSK---ARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred -CCCCC---CCcceeeeccCCcEEeeccccCceeecCccc
Confidence 00111 2488999999999999999999999997765
No 10
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.38 E-value=8.9e-11 Score=115.97 Aligned_cols=233 Identities=17% Similarity=0.218 Sum_probs=158.0
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
..|+.++.+| +|.+|+++...+.|=+++. .+|+++.+. |+|. .|++|.++
T Consensus 62 ~ap~dvapap-dG~VWft~qg~gaiGhLdP------~tGev~~ypLg~Ga----------------------~Phgiv~g 112 (353)
T COG4257 62 SAPFDVAPAP-DGAVWFTAQGTGAIGHLDP------ATGEVETYPLGSGA----------------------SPHGIVVG 112 (353)
T ss_pred CCccccccCC-CCceEEecCccccceecCC------CCCceEEEecCCCC----------------------CCceEEEC
Confidence 4689999997 9999999999999999953 357776654 4333 59999999
Q ss_pred cCCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC-CEEEEE
Q psy4832 301 ADKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD-RVIFKL 377 (770)
Q Consensus 301 ~~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~-~~I~~i 377 (770)
++|..||+|+.+ |+++++ .+.++++-=...+ ..+.|+ -..||+ .|+|||+.. +.-=|+
T Consensus 113 pdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~---------------a~~nle---t~vfD~-~G~lWFt~q~G~yGrL 173 (353)
T COG4257 113 PDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEH---------------ADANLE---TAVFDP-WGNLWFTGQIGAYGRL 173 (353)
T ss_pred CCCCeeEecCcceeEEecCcccceEEeeccccc---------------CCCccc---ceeeCC-CccEEEeeccccceec
Confidence 999999999997 999997 5677665321111 122343 457898 999999984 333367
Q ss_pred cCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEE
Q psy4832 378 TNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVI 457 (770)
Q Consensus 378 ~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i 457 (770)
++.-.+..+.-.|. =..|+||++.|+|.+|+++...+. |-++
T Consensus 174 dPa~~~i~vfpaPq-----------------------------------G~gpyGi~atpdGsvwyaslagna---iari 215 (353)
T COG4257 174 DPARNVISVFPAPQ-----------------------------------GGGPYGICATPDGSVWYASLAGNA---IARI 215 (353)
T ss_pred CcccCceeeeccCC-----------------------------------CCCCcceEECCCCcEEEEeccccc---eEEc
Confidence 76544333332221 134899999999999999988765 4555
Q ss_pred cC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCcccC-
Q psy4832 458 DS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYLPTHD- 535 (770)
Q Consensus 458 ~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~~~~- 535 (770)
|+ +|.-..+. ..++.-+.-..|-.||-|.+|+++.++.++.++++......
T Consensus 216 dp~~~~aev~p---------------------------~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 216 DPFAGHAEVVP---------------------------QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred ccccCCcceec---------------------------CCCcccccccccccCccCcEEEeccCCceeeEeCccccccee
Confidence 54 33211111 11111122345788999999999999999999977543221
Q ss_pred ------CCCcEEEeCCCCCcEEEEecCCceEEEEcCCC
Q psy4832 536 ------EHGEFKIPYPATNEIYVFNRYGQHITTRDMTS 567 (770)
Q Consensus 536 ------~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~t 567 (770)
....|.+..+..+.+|+.+....-+...|+.+
T Consensus 269 ypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 269 YPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred eeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc
Confidence 12356677777778887666655555555544
No 11
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.37 E-value=1.7e-10 Score=126.74 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=96.1
Q ss_pred eecCCCeEEECCCccEEeccc-----------CCC-eEEEEec---cCccCCccCCCCCcccccccccCceEEEEcCCCC
Q psy4832 128 YNFHEGILQKGDGSSLHLKHE-----------FPR-TVSVVMG---TGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS 192 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~-----------~~~-~i~~v~g---~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~ 192 (770)
+..|.+|+.+.+| ++|+++. ... .|.++.- +|..-. -......+..|.+|++.++|
T Consensus 13 ~~~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~-------~~vfa~~l~~p~Gi~~~~~G- 83 (367)
T TIGR02604 13 LRNPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK-------SNVFAEELSMVTGLAVAVGG- 83 (367)
T ss_pred cCCCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce-------eEEeecCCCCccceeEecCC-
Confidence 5678999999999 5888752 122 5555532 232210 01112347789999999999
Q ss_pred EEEEeCceEEEE-cCCC------cEEEEecc-Ccc---cccceeEEEEeCCCCcEEEEeCCC------------------
Q psy4832 193 LYVGDFNLVRRL-TPEG------NVFTVLQL-SAT---QVSYQYYLALSPADGHLYISDAEK------------------ 243 (770)
Q Consensus 193 lyv~d~~~I~~i-~~~G------~v~~~~~~-~~~---~~~~p~~lav~p~~g~lyvsd~~~------------------ 243 (770)
|||++..+|.++ +.+| +...++.. ... ....+.+++++| +|.|||++..+
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~ 162 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGL 162 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCccccc
Confidence 999998888888 4433 43344321 111 134588999997 89999988732
Q ss_pred -cEEEEEeccCCccCCCC-cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC
Q psy4832 244 -HQILRVLSLESVADPSI-NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN 312 (770)
Q Consensus 244 -~~I~~i~~~~~~~~~~g-~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~ 312 (770)
+.|+++ ++++ .+++++. .+.+|.||+++++|+||++|..+
T Consensus 163 ~g~i~r~-------~pdg~~~e~~a~----------------------G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 163 GGGLFRY-------NPDGGKLRVVAH----------------------GFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CceEEEE-------ecCCCeEEEEec----------------------CcCCCccceECCCCCEEEEccCC
Confidence 356666 3444 3444431 25689999999999999999754
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=9.8e-10 Score=119.80 Aligned_cols=263 Identities=19% Similarity=0.228 Sum_probs=159.8
Q ss_pred cccCceEEEEcCCCC-EEEEeC-----c--eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 178 RLLTPVALTSGPDGS-LYVGDF-----N--LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 178 ~l~~P~~la~~~dG~-lyv~d~-----~--~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
...+|..|+++|++. ||++.. + ...+++++ |+...+-.. ...-..|..|+++|.+..||+++...+.|..
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 456799999999765 888765 2 34566676 665544322 2245679999999988899999999998877
Q ss_pred EeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC--CCC-cE
Q psy4832 249 VLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS--PEG-II 322 (770)
Q Consensus 249 i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id--~~G-~i 322 (770)
+.. +.+|.+......-. +.|.+-......-.+|+.+.++|+|+ ||++|-+. |++++ ... .+
T Consensus 114 ~~l-----~~~g~l~~~~~~~~--------~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l 180 (345)
T PF10282_consen 114 FPL-----DDDGSLGEVVQTVR--------HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKL 180 (345)
T ss_dssp EEE-----CTTSEEEEEEEEEE--------SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TE
T ss_pred EEc-----cCCcccceeeeecc--------cCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceE
Confidence 654 44565543321000 00000001112245799999999986 99999776 66554 333 44
Q ss_pred EEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc---CCCcEEEEecCCCCCCCC
Q psy4832 323 HTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT---NDLKVKIVAGIPLHCRTG 396 (770)
Q Consensus 323 ~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~---~~G~v~~vaG~~~~~~~~ 396 (770)
........ ..-..|..|+++| ++ .+||+. ++.|..++ .+|.++.+...+.... .
T Consensus 181 ~~~~~~~~------------------~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~-~ 240 (345)
T PF10282_consen 181 TPVDSIKV------------------PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE-G 240 (345)
T ss_dssp EEEEEEEC------------------STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET-T
T ss_pred EEeecccc------------------ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc-c
Confidence 33111000 0112599999999 65 699998 57666665 3565554432221110 0
Q ss_pred CCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcEEEeecCccCCC
Q psy4832 397 DKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRMFDFAGRWQSDK 474 (770)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i~~~aG~~~~~~ 474 (770)
. ..-..|.+|+++|+|+ |||+....+.|. +..++ .+|.++.+.-..
T Consensus 241 ~---------------------------~~~~~~~~i~ispdg~~lyvsnr~~~sI~-vf~~d~~~g~l~~~~~~~---- 288 (345)
T PF10282_consen 241 F---------------------------TGENAPAEIAISPDGRFLYVSNRGSNSIS-VFDLDPATGTLTLVQTVP---- 288 (345)
T ss_dssp S---------------------------CSSSSEEEEEE-TTSSEEEEEECTTTEEE-EEEECTTTTTEEEEEEEE----
T ss_pred c---------------------------cccCCceeEEEecCCCEEEEEeccCCEEE-EEEEecCCCceEEEEEEe----
Confidence 0 0013699999999998 999999988763 44554 467776553211
Q ss_pred CCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 475 KNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 475 ~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
..-..|.+++++|+|. |||+++.++.|..+..
T Consensus 289 -----------------------~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 289 -----------------------TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp -----------------------ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred -----------------------CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 0123599999999995 7999998888765543
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=1.9e-10 Score=121.40 Aligned_cols=202 Identities=20% Similarity=0.283 Sum_probs=131.4
Q ss_pred eEEEEcCCC-CEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 183 VALTSGPDG-SLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 183 ~~la~~~dG-~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
.+...+++. .||++|. ++|.+++++ |+..... . .-..+.++.++ ..+.|..++.+-.++ .. +.
T Consensus 28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~-~---p~~~~~~~~~d-~~g~Lv~~~~g~~~~-~~-------~~ 94 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP-S---PGGFSSGALID-AGGRLIACEHGVRLL-DP-------DT 94 (307)
T ss_pred cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE-C---CCCcccceeec-CCCeEEEEccccEEE-ec-------cC
Confidence 444566754 4999997 699999986 5554433 2 12236778888 488888888753322 22 22
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC---------C----eEEECCCCcEEEe
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT---------N----IRVVSPEGIIHTL 325 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~---------~----Ir~id~~G~i~t~ 325 (770)
.+.++.++-... ..+++.|+.+.++++|.+||.|.. . ++++++.|.+.++
T Consensus 95 ~~~~t~~~~~~~-----------------~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 95 GGKITLLAEPED-----------------GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred CceeEEeccccC-----------------CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 333344442211 234678999999999999999977 1 8888888877776
Q ss_pred ecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEeC--CEEEEEcCCCcEEEEecCCCCCCCCCCCCcc
Q psy4832 326 IGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFIDD--RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRD 402 (770)
Q Consensus 326 ~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D~--~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~ 402 (770)
+.. .+..|+|||++| ++ .||++|+ ++|++++-+-.--.+.+. ....
T Consensus 158 ~~~---------------------~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~-------- 206 (307)
T COG3386 158 LDD---------------------DLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFV-------- 206 (307)
T ss_pred ecC---------------------cEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEE--------
Confidence 632 266899999999 66 7999995 899999855200000110 0000
Q ss_pred ccccccccccccccCCcccccccccCCeeEEEEcCCCCEEE-EeCCCCceeeEEEEcCCCcEEEee
Q psy4832 403 FKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYI-ADIDARKVNALRVIDSTGRMFDFA 467 (770)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyV-aD~~~~ri~~i~~i~~~G~i~~~a 467 (770)
.....-..|.|+++|.+|+||+ +..+.. +|..++++|+.....
T Consensus 207 -------------------~~~~~~G~PDG~~vDadG~lw~~a~~~g~---~v~~~~pdG~l~~~i 250 (307)
T COG3386 207 -------------------DFDEEPGLPDGMAVDADGNLWVAAVWGGG---RVVRFNPDGKLLGEI 250 (307)
T ss_pred -------------------EccCCCCCCCceEEeCCCCEEEecccCCc---eEEEECCCCcEEEEE
Confidence 0000114699999999999995 444443 478889999865544
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=1.9e-09 Score=117.03 Aligned_cols=249 Identities=15% Similarity=0.154 Sum_probs=145.8
Q ss_pred cCceEEEEcCCCC-EEEEeC--ceE--EEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCC
Q psy4832 180 LTPVALTSGPDGS-LYVGDF--NLV--RRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLES 254 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~--~~I--~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~ 254 (770)
..|..|+++|+|. ||++.. +.| .+++.+|++..+-.. .....|.+|+++|.+..||++....++|..++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~--- 109 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPL--- 109 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEE---
Confidence 3688899999987 788765 455 455556765433211 122368999999977789999888888877743
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEEC--CCCcEEEeecCC
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVS--PEGIIHTLIGHH 329 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id--~~G~i~t~~g~~ 329 (770)
+.+|.+...... ......|.+++++++|. +|+++... |+.++ .+|.+.......
T Consensus 110 --~~~g~~~~~~~~-------------------~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 110 --DKDGIPVAPIQI-------------------IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred --CCCCCCCCceee-------------------ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 222322111100 00123689999999885 88888653 66554 445442111000
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcC---CCcEEEEecCCCCCCCCCCCCccc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTN---DLKVKIVAGIPLHCRTGDKDKRDF 403 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~---~G~v~~vaG~~~~~~~~~~~~~~~ 403 (770)
.. .+ .=..|.+++++| +| .||+++ .+.|..++. .|+++.+.-..... .
T Consensus 169 ~~------~~----------~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p--~------- 222 (330)
T PRK11028 169 VT------TV----------EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP--A------- 222 (330)
T ss_pred ee------cC----------CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC--C-------
Confidence 00 00 012488999999 65 588987 467665553 35543322111000 0
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCC
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNC 482 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~ 482 (770)
....-..|.+|+++|+|. ||+++...+.|. +..++.++...++.+.-.
T Consensus 223 -------------------~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~-v~~i~~~~~~~~~~~~~~----------- 271 (330)
T PRK11028 223 -------------------DFSDTRWAADIHITPDGRHLYACDRTASLIS-VFSVSEDGSVLSFEGHQP----------- 271 (330)
T ss_pred -------------------cCCCCccceeEEECCCCCEEEEecCCCCeEE-EEEEeCCCCeEEEeEEEe-----------
Confidence 000012467899999987 999987766653 344555654333332210
Q ss_pred cccccCccCcccccceecCCeeEEEEcCCC-cEEEEcCCCceEEee
Q psy4832 483 AEFEKNSKETLLTSTARFTSISALSVSPDG-VVNVADQGSLHILAL 527 (770)
Q Consensus 483 ~~~~~~~~d~~~~~~~~l~~P~giav~~dG-~lyvaD~~~~~I~~i 527 (770)
.-..|.+++++||| .||++...++.|..+
T Consensus 272 ----------------~~~~p~~~~~~~dg~~l~va~~~~~~v~v~ 301 (330)
T PRK11028 272 ----------------TETQPRGFNIDHSGKYLIAAGQKSHHISVY 301 (330)
T ss_pred ----------------ccccCCceEECCCCCEEEEEEccCCcEEEE
Confidence 01358899999999 678888777766554
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5.7e-10 Score=117.74 Aligned_cols=203 Identities=23% Similarity=0.266 Sum_probs=133.6
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC-CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP-SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~-~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
....+...++..+.||++|-..++|+++ ++ +|...++.-.+ ..+.++.++
T Consensus 25 ~~gEgP~w~~~~~~L~w~DI~~~~i~r~-------~~~~g~~~~~~~p~----------------------~~~~~~~~d 75 (307)
T COG3386 25 TLGEGPVWDPDRGALLWVDILGGRIHRL-------DPETGKKRVFPSPG----------------------GFSSGALID 75 (307)
T ss_pred ccccCccCcCCCCEEEEEeCCCCeEEEe-------cCCcCceEEEECCC----------------------Ccccceeec
Confidence 3455667787788899999999999999 45 35555543211 136688999
Q ss_pred cCCcEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCC-------
Q psy4832 301 ADKTMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDR------- 372 (770)
Q Consensus 301 ~~G~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~------- 372 (770)
+.|.|..++.+. ++.++..+.++.++-.. ....++.|+++.++| +|.+||.|.+
T Consensus 76 ~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~-----------------~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~ 137 (307)
T COG3386 76 AGGRLIACEHGVRLLDPDTGGKITLLAEPE-----------------DGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKS 137 (307)
T ss_pred CCCeEEEEccccEEEeccCCceeEEecccc-----------------CCCCcCCCCceeEcC-CCCEEEeCCCccccCcc
Confidence 999999998775 44444445545544322 123567899999999 9999999843
Q ss_pred ------EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEe
Q psy4832 373 ------VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIAD 445 (770)
Q Consensus 373 ------~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD 445 (770)
.|++++++|.+..+.- ..+..|+|||++||| .||++|
T Consensus 138 ~~~~~G~lyr~~p~g~~~~l~~------------------------------------~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 138 EERPTGSLYRVDPDGGVVRLLD------------------------------------DDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccCCcceEEEEcCCCCEEEeec------------------------------------CcEEecCceEECCCCCEEEEEe
Confidence 5888888776655542 114569999999999 599999
Q ss_pred CCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCC-ceE
Q psy4832 446 IDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS-LHI 524 (770)
Q Consensus 446 ~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~-~~I 524 (770)
+..++|.++..-..+|.+ .+.. .... |.. .=..|.|+++|.+|.||++-..+ .+|
T Consensus 182 T~~~~i~r~~~d~~~g~~---~~~~--~~~~-----~~~--------------~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 182 TPANRIHRYDLDPATGPI---GGRR--GFVD-----FDE--------------EPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred CCCCeEEEEecCcccCcc---CCcc--eEEE-----ccC--------------CCCCCCceEEeCCCCEEEecccCCceE
Confidence 998875444221111221 1100 0000 000 01359999999999999654443 488
Q ss_pred EeeecCC
Q psy4832 525 LALQHYL 531 (770)
Q Consensus 525 ~~i~~~~ 531 (770)
.++.+..
T Consensus 238 ~~~~pdG 244 (307)
T COG3386 238 VRFNPDG 244 (307)
T ss_pred EEECCCC
Confidence 8887663
No 16
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=1.2e-08 Score=111.40 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=142.0
Q ss_pred EEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---CCcEEEEEeccCCccCCC-CcEEEEECCCccccCC
Q psy4832 201 VRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---EKHQILRVLSLESVADPS-INWEVAVGSGERCIPG 275 (770)
Q Consensus 201 I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---~~~~I~~i~~~~~~~~~~-g~~~~vaG~g~~~~p~ 275 (770)
+.++|. +|++..+- . ......|..|+++|.+..||+++. ..+.|..+.. +++ |.++.+.-...
T Consensus 17 ~~~~d~~~g~l~~~~-~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i-----~~~~g~L~~~~~~~~----- 84 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQ-T-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI-----DPDTGTLTLLNSVPS----- 84 (345)
T ss_dssp EEEEETTTTEEEEEE-E-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEE-----ETTTTEEEEEEEEEE-----
T ss_pred EEEEcCCCCCceEee-e-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEE-----CCCcceeEEeeeecc-----
Confidence 344543 35544332 2 335678999999998899999988 4677766643 344 66655432110
Q ss_pred CCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCccccccc
Q psy4832 276 DETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQ 350 (770)
Q Consensus 276 ~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~ 350 (770)
.-..|..|+++++|. ||++.... +..++.+|.+......-..... .|. .....
T Consensus 85 --------------~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~-g~~-------~~rq~ 142 (345)
T PF10282_consen 85 --------------GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGS-GPN-------PDRQE 142 (345)
T ss_dssp --------------SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEE-ESS-------TTTTS
T ss_pred --------------CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCC-CCc-------ccccc
Confidence 112588999999876 89998644 5667788876654321000000 000 01112
Q ss_pred ccCcceEEEeCCCC-eEEEEe--CCEEEEEcCC---CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 351 LQWPTGLALSPLDD-SLHFID--DRVIFKLTND---LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 351 l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~~---G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
-..|..+.++| +| .|||+| .++|+.++.+ +++........
T Consensus 143 ~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~--------------------------------- 188 (345)
T PF10282_consen 143 GPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV--------------------------------- 188 (345)
T ss_dssp STCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC---------------------------------
T ss_pred cccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc---------------------------------
Confidence 34689999999 65 599999 5787777733 23433221100
Q ss_pred cccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCe
Q psy4832 425 MDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSI 503 (770)
Q Consensus 425 ~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P 503 (770)
..-..|+.|+|+|+|. +||+...++.|..+..-..+|.+..+....... .....-+.|
T Consensus 189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~---------------------~~~~~~~~~ 247 (345)
T PF10282_consen 189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP---------------------EGFTGENAP 247 (345)
T ss_dssp STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE---------------------TTSCSSSSE
T ss_pred ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc---------------------ccccccCCc
Confidence 0113499999999986 999999988876654443677665443211100 000111479
Q ss_pred eEEEEcCCCc-EEEEcCCCceEEeeec
Q psy4832 504 SALSVSPDGV-VNVADQGSLHILALQH 529 (770)
Q Consensus 504 ~giav~~dG~-lyvaD~~~~~I~~i~~ 529 (770)
.+|+++|||. |||+..+.+.|..+.-
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEE
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEE
Confidence 9999999995 7999999888766654
No 17
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.20 E-value=5.3e-08 Score=105.65 Aligned_cols=236 Identities=14% Similarity=0.166 Sum_probs=130.4
Q ss_pred EEEEeC--ceEEEEc--CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECC
Q psy4832 193 LYVGDF--NLVRRLT--PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGS 268 (770)
Q Consensus 193 lyv~d~--~~I~~i~--~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~ 268 (770)
+|++.. +.|+.++ .+|+...+-.. .....|..|+++|....||++....+.|..++. +.+|.+..+. .
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~--~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~-----~~~g~l~~~~-~ 75 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVV--DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI-----ADDGALTFAA-E 75 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEE--ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE-----CCCCceEEee-e
Confidence 566644 3444444 34654322111 122468899999966679999887777755532 3344443322 1
Q ss_pred CccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEE--CCCCcEEEeecCCCCCCCcCCCccCCC
Q psy4832 269 GERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVV--SPEGIIHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 269 g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~i--d~~G~i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
.. ....|.+|+++++|+ ||++.... |..+ +.+|.+......-
T Consensus 76 ~~-------------------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-------------- 122 (330)
T PRK11028 76 SP-------------------LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-------------- 122 (330)
T ss_pred ec-------------------CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec--------------
Confidence 00 012588999999887 88876422 5544 4455432221110
Q ss_pred cccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEcC--CCcEEEEecCCCCCCCCCCCCccccccccccccccccCC
Q psy4832 344 FPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLTN--DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD 418 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~~--~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (770)
.....|.+++++| ++ .|||++ .+.|..++. +|.+..........
T Consensus 123 -----~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~------------------------- 171 (330)
T PRK11028 123 -----EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT------------------------- 171 (330)
T ss_pred -----cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-------------------------
Confidence 0124588999999 55 688988 466766663 34332110000000
Q ss_pred cccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 419 SVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 419 ~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
..-..|.+++++|+|. |||++...+.|. +..++. .|++..+.--... ....
T Consensus 172 ------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~-v~~~~~~~~~~~~~~~~~~~-----------------p~~~--- 224 (330)
T PRK11028 172 ------VEGAGPRHMVFHPNQQYAYCVNELNSSVD-VWQLKDPHGEIECVQTLDMM-----------------PADF--- 224 (330)
T ss_pred ------CCCCCCceEEECCCCCEEEEEecCCCEEE-EEEEeCCCCCEEEEEEEecC-----------------CCcC---
Confidence 0013489999999987 899988777653 333433 4554332100000 0000
Q ss_pred ceecCCeeEEEEcCCCc-EEEEcCCCceEEeee
Q psy4832 497 TARFTSISALSVSPDGV-VNVADQGSLHILALQ 528 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~ 528 (770)
..-..|.+|+++|+|. +|+++...+.|..+.
T Consensus 225 -~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~ 256 (330)
T PRK11028 225 -SDTRWAADIHITPDGRHLYACDRTASLISVFS 256 (330)
T ss_pred -CCCccceeEEECCCCCEEEEecCCCCeEEEEE
Confidence 0012467899999985 799988777776554
No 18
>KOG1214|consensus
Probab=99.19 E-value=1e-09 Score=121.72 Aligned_cols=223 Identities=18% Similarity=0.202 Sum_probs=158.8
Q ss_pred CEEEEeCceEEEEcCCCcEEE------EeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEE
Q psy4832 192 SLYVGDFNLVRRLTPEGNVFT------VLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVA 265 (770)
Q Consensus 192 ~lyv~d~~~I~~i~~~G~v~~------~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~v 265 (770)
.|.++....|.++..+|.... ++.+ .-.-+.||++|=.+..+||+|...+.|.+-...+ +..+++
T Consensus 992 ~LL~aqg~~I~~lplng~~~~K~~ak~~l~~---p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G------~Ep~ti 1062 (1289)
T KOG1214|consen 992 FLLYAQGQQIGYLPLNGTRLQKDAAKTLLSL---PGSIIVGIDFDCRERMVYWTDVAGRSISRASLEG------AEPETI 1062 (1289)
T ss_pred eEEEeccceEEEeecCcchhchhhhhceEec---ccceeeeeecccccceEEEeecCCCccccccccC------CCCcee
Confidence 366666667777766664332 1211 1234679999988899999999999898763211 122233
Q ss_pred ECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCC
Q psy4832 266 VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHR 342 (770)
Q Consensus 266 aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~ 342 (770)
+ +..|..|.|||||- ..+||++|+.+ |-+-..||+...++-.
T Consensus 1063 ~---------------------n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~-------------- 1107 (1289)
T KOG1214|consen 1063 V---------------------NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFY-------------- 1107 (1289)
T ss_pred e---------------------cccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEe--------------
Confidence 2 23477999999997 45699999977 7666678876665422
Q ss_pred CcccccccccCcceEEEeCCCCeEEEEe----CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCC
Q psy4832 343 SFPASTAQLQWPTGLALSPLDDSLHFID----DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDD 418 (770)
Q Consensus 343 ~~~~~~~~l~~P~gla~d~~~g~lyv~D----~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (770)
..|-+|.+|++|+..++||++| |-+|-+.+.||+-+.+.
T Consensus 1108 ------tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRil------------------------------- 1150 (1289)
T KOG1214|consen 1108 ------TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRIL------------------------------- 1150 (1289)
T ss_pred ------ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEE-------------------------------
Confidence 2477899999999999999999 45788888888765554
Q ss_pred cccccccccCCeeEEEEcCCC-CEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccc
Q psy4832 419 SVRASNMDLGSLTALAFSPTG-DLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTST 497 (770)
Q Consensus 419 ~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 497 (770)
++..+.-|+||.|||.- .|-|+|.+++| +.-+.++|.-...+ .
T Consensus 1151 ----in~DigLPNGLtfdpfs~~LCWvDAGt~r---leC~~p~g~gRR~i-----------------------------~ 1194 (1289)
T KOG1214|consen 1151 ----INTDIGLPNGLTFDPFSKLLCWVDAGTKR---LECTLPDGTGRRVI-----------------------------Q 1194 (1289)
T ss_pred ----eecccCCCCCceeCcccceeeEEecCCcc---eeEecCCCCcchhh-----------------------------h
Confidence 22335669999999954 59999999987 45555665422221 1
Q ss_pred eecCCeeEEEEcCCCcEEEEcCCCceEEeeecCCc
Q psy4832 498 ARFTSISALSVSPDGVVNVADQGSLHILALQHYLP 532 (770)
Q Consensus 498 ~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~~ 532 (770)
..|+.|.+|.-+.+. +|.+|-..++|..+..+..
T Consensus 1195 ~~LqYPF~itsy~~~-fY~TDWk~n~vvsv~~~~~ 1228 (1289)
T KOG1214|consen 1195 NNLQYPFSITSYADH-FYHTDWKRNGVVSVNKHSG 1228 (1289)
T ss_pred hcccCceeeeecccc-ceeeccccCceEEeecccc
Confidence 237889999998774 9999999999999987754
No 19
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.2e-08 Score=112.49 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=157.3
Q ss_pred CceEEEEcCCC-CEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDG-SLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG-~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.|.++++.++| .+||+.. +.+..++..-...+... .....+|.++++++....+|+.+...+.|.+|+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~--~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~------ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSL--SVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDT------ 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeec--cCCCccccceeeCCCCCeEEEecCCCCeEEEEcC------
Confidence 89999999999 7999885 46667765433333221 2233789999999877789999999999999951
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC-cEEEEeCC--C--eEEECCCC-cEEEeecCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK-TMFIADGT--N--IRVVSPEG-IIHTLIGHHKH 331 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G-~lYvaD~~--~--Ir~id~~G-~i~t~~g~~~~ 331 (770)
....+..... .| ..|.++++++++ .+||++.. + |.++|... ++......+
T Consensus 104 ~~~~~~~~~~------------vG----------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG-- 159 (381)
T COG3391 104 ATNTVLGSIP------------VG----------LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG-- 159 (381)
T ss_pred cccceeeEee------------ec----------cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC--
Confidence 1111111111 11 169999999977 69999984 3 88898763 333322221
Q ss_pred CCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccc
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQS 408 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~ 408 (770)
..|.+++++| +|+ +|+++ +++|..++.++..... +.+..
T Consensus 160 --------------------~~P~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~---------------- 201 (381)
T COG3391 160 --------------------NTPTGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS---------------- 201 (381)
T ss_pred --------------------CCcceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-ccccc----------------
Confidence 1578999999 665 99999 7899999866542222 22111
Q ss_pred ccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCccccc
Q psy4832 409 KTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEK 487 (770)
Q Consensus 409 ~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~ 487 (770)
....+..|.+++++++|. +||++..+.. +++.+++......+....
T Consensus 202 --------------~~~~~~~P~~i~v~~~g~~~yV~~~~~~~-~~v~~id~~~~~v~~~~~------------------ 248 (381)
T COG3391 202 --------------LVGVGTGPAGIAVDPDGNRVYVANDGSGS-NNVLKIDTATGNVTATDL------------------ 248 (381)
T ss_pred --------------ccccCCCCceEEECCCCCEEEEEeccCCC-ceEEEEeCCCceEEEecc------------------
Confidence 112356799999999998 9999998731 246777753322121100
Q ss_pred CccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeeecC
Q psy4832 488 NSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQHY 530 (770)
Q Consensus 488 ~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~~~ 530 (770)
....+ .|.+++++|+|. +|+++...+.+..+...
T Consensus 249 --------~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 249 --------PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred --------ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 11235 689999999985 57777776666666543
No 20
>KOG1214|consensus
Probab=99.13 E-value=7.1e-10 Score=122.91 Aligned_cols=188 Identities=15% Similarity=0.189 Sum_probs=140.6
Q ss_pred ceEEEEcC-CCCEEEEeC--ceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 182 PVALTSGP-DGSLYVGDF--NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 182 P~~la~~~-dG~lyv~d~--~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
|.+|++|= +-.||++|. ..|+|-..+|. -.+++ ...|..|.|||||...-++|++|+.+.+|-.- .
T Consensus 1027 iVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~---n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA-------~ 1096 (1289)
T KOG1214|consen 1027 IVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIV---NSGLISPEGIAVDHIRRNMYWTDSVLDKIEVA-------L 1096 (1289)
T ss_pred eeeeecccccceEEEeecCCCccccccccCCCCceee---cccCCCccceeeeeccceeeeeccccchhhee-------e
Confidence 56667764 677999997 47999988875 45666 45789999999999899999999988887655 3
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC----eEEECCCCcEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN----IRVVSPEGIIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~ 332 (770)
.+|....+.= ...|-+|++|++|+ .|+||++|+.+ |-..+.||+-..++=.
T Consensus 1097 LdG~~rkvLf--------------------~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin---- 1152 (1289)
T KOG1214|consen 1097 LDGSERKVLF--------------------YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN---- 1152 (1289)
T ss_pred cCCceeeEEE--------------------eecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee----
Confidence 4555433221 12367999999999 78899999976 8888888865554422
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~ 410 (770)
..+.-|+||.|+|....|-++| ++|+.-+.++|.-+.++
T Consensus 1153 ----------------~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i----------------------- 1193 (1289)
T KOG1214|consen 1153 ----------------TDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVI----------------------- 1193 (1289)
T ss_pred ----------------cccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhh-----------------------
Confidence 2356799999999667789999 68888888887533332
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
...|..|.+|+-+.+ ++|++|+..++|..+.+
T Consensus 1194 -------------~~~LqYPF~itsy~~-~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1194 -------------QNNLQYPFSITSYAD-HFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred -------------hhcccCceeeeeccc-cceeeccccCceEEeec
Confidence 234778999987765 49999998877655543
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=3e-08 Score=109.40 Aligned_cols=235 Identities=19% Similarity=0.303 Sum_probs=154.4
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC--ceEEEEcC
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF--NLVRRLTP 206 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~--~~I~~i~~ 206 (770)
.|.++++..+|..+|+++.....+..+.- . .....|. ....+..|.++++.++|+ +|+... +.|.+|+.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~-~-~n~~~~~------~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~ 103 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDA-T-SNTVTQS------LSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDT 103 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeeccc-c-cceeeee------ccCCCccccceeeCCCCCeEEEecCCCCeEEEEcC
Confidence 78899999999999998855554444432 2 2212121 111227899999999887 999984 79999984
Q ss_pred C-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC
Q psy4832 207 E-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN 283 (770)
Q Consensus 207 ~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~ 283 (770)
+ -++...+..+ ..|.+++++|.++.+||++. .++.|.+++ ...+...... +-|
T Consensus 104 ~~~~~~~~~~vG----~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid-------~~t~~~~~~~-----------~vG-- 159 (381)
T COG3391 104 ATNTVLGSIPVG----LGPVGLAVDPDGKYVYVANAGNGNNTVSVID-------AATNKVTATI-----------PVG-- 159 (381)
T ss_pred cccceeeEeeec----cCCceEEECCCCCEEEEEecccCCceEEEEe-------CCCCeEEEEE-----------ecC--
Confidence 3 3333333221 28999999998889999999 579999995 3322211111 001
Q ss_pred cccccccccCcceEEEccCCc-EEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe
Q psy4832 284 GPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS 360 (770)
Q Consensus 284 g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d 360 (770)
..|.+++++++|+ +|+++... |..++.++.-..- +.... ....+..|.+++++
T Consensus 160 --------~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~---------------~~~~~~~P~~i~v~ 215 (381)
T COG3391 160 --------NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGS---------------LVGVGTGPAGIAVD 215 (381)
T ss_pred --------CCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-ccccc---------------ccccCCCCceEEEC
Confidence 0578999999998 99999433 8888876633221 22110 11246689999999
Q ss_pred CCCCe-EEEEeC----CEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEE
Q psy4832 361 PLDDS-LHFIDD----RVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALA 434 (770)
Q Consensus 361 ~~~g~-lyv~D~----~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gia 434 (770)
+ +|. +||++. +.|.+++.. +.+... .. ....+ .|.+++
T Consensus 216 ~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~-~~---------------------------------~~~~~-~~~~v~ 259 (381)
T COG3391 216 P-DGNRVYVANDGSGSNNVLKIDTATGNVTAT-DL---------------------------------PVGSG-APRGVA 259 (381)
T ss_pred C-CCCEEEEEeccCCCceEEEEeCCCceEEEe-cc---------------------------------ccccC-CCCcee
Confidence 9 665 999983 488888854 332221 11 11234 689999
Q ss_pred EcCCCC-EEEEeCCCCceeeEEEEcC
Q psy4832 435 FSPTGD-LYIADIDARKVNALRVIDS 459 (770)
Q Consensus 435 vd~~G~-lyVaD~~~~ri~~i~~i~~ 459 (770)
++|+|. +||++...+. +..++.
T Consensus 260 ~~p~g~~~yv~~~~~~~---V~vid~ 282 (381)
T COG3391 260 VDPAGKAAYVANSQGGT---VSVIDG 282 (381)
T ss_pred ECCCCCEEEEEecCCCe---EEEEeC
Confidence 999987 8888777554 666664
No 22
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=99.10 E-value=9.5e-08 Score=105.36 Aligned_cols=184 Identities=22% Similarity=0.201 Sum_probs=104.9
Q ss_pred ccccCceEEEEcCCCCEEEEeC--ceEEEEcCCC-cEEEEeccC----cccccceeEEEEeCC------CCcEEEEeC--
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEG-NVFTVLQLS----ATQVSYQYYLALSPA------DGHLYISDA-- 241 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G-~v~~~~~~~----~~~~~~p~~lav~p~------~g~lyvsd~-- 241 (770)
..|..|++|++.|||+|||++. ++|+++++++ ....+..+. ......+.+||++|. ++.|||+-+
T Consensus 27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~ 106 (454)
T TIGR03606 27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYK 106 (454)
T ss_pred CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence 4688999999999999999996 7999998654 333333322 113566899999974 357999842
Q ss_pred -------CCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--
Q psy4832 242 -------EKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-- 312 (770)
Q Consensus 242 -------~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-- 312 (770)
...+|.|+..............++.+.... ..++-..|+++++|.|||+-+..
T Consensus 107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~------------------~~H~GgrI~FgPDG~LYVs~GD~g~ 168 (454)
T TIGR03606 107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAG------------------NDHNGGRLVFGPDGKIYYTIGEQGR 168 (454)
T ss_pred CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCC------------------CCcCCceEEECCCCcEEEEECCCCC
Confidence 246788875421100111112233221110 01234578999999999973221
Q ss_pred -e-----EE-----------------ECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 313 -I-----RV-----------------VSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 313 -I-----r~-----------------id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
- +. -+..|+|.++--.+.... -.|+..+.....-...+++|.+|+++| +|.||++
T Consensus 169 ~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~-dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~ 246 (454)
T TIGR03606 169 NQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK-DNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYAS 246 (454)
T ss_pred CCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCC-CCCccCCCcceEEEEeccccceeEECC-CCCEEEE
Confidence 0 00 012344544432221100 011110000122345689999999999 9999999
Q ss_pred eC-----CEEEEEcCC
Q psy4832 370 DD-----RVIFKLTND 380 (770)
Q Consensus 370 D~-----~~I~~i~~~ 380 (770)
|. ..|-+|.+.
T Consensus 247 e~Gp~~~DEiN~I~~G 262 (454)
T TIGR03606 247 EQGPNSDDELNIIVKG 262 (454)
T ss_pred ecCCCCCcEEEEeccC
Confidence 93 356666543
No 23
>KOG1520|consensus
Probab=99.05 E-value=5.4e-09 Score=109.55 Aligned_cols=156 Identities=18% Similarity=0.217 Sum_probs=100.1
Q ss_pred cccCcceEEEccCC-cEEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEE
Q psy4832 290 KLSHPKGLAIKADK-TMFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLH 367 (770)
Q Consensus 290 ~l~~P~gIavd~~G-~lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ly 367 (770)
..-.|-||++++.| +|||||+.- +.+|+++|...+..-.... ...+...+++.|++ +|.||
T Consensus 113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~----------------G~~~kf~N~ldI~~-~g~vy 175 (376)
T KOG1520|consen 113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAE----------------GKPFKFLNDLDIDP-EGVVY 175 (376)
T ss_pred ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceecccccc----------------CeeeeecCceeEcC-CCeEE
Confidence 33479999999977 899999988 9999999876554433221 23577788999999 99999
Q ss_pred EEeCCE----------EEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC
Q psy4832 368 FIDDRV----------IFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP 437 (770)
Q Consensus 368 v~D~~~----------I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~ 437 (770)
|+|+.. +..-+++|++...--. ++. ..-....|..|+||++++
T Consensus 176 FTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~-------------tK~--------------~~VLld~L~F~NGlaLS~ 228 (376)
T KOG1520|consen 176 FTDSSSKYDRRDFVFAALEGDPTGRLFRYDPS-------------TKV--------------TKVLLDGLYFPNGLALSP 228 (376)
T ss_pred EeccccccchhheEEeeecCCCccceEEecCc-------------ccc--------------hhhhhhcccccccccCCC
Confidence 999421 1111133332221100 000 001234578899999999
Q ss_pred CCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEE
Q psy4832 438 TGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVN 515 (770)
Q Consensus 438 ~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~ly 515 (770)
++. +.++|+...||+|++.-.+ -|+...++- + . -..|..|..+++|..|
T Consensus 229 d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~-~----------------------L------PG~PDNIR~~~~G~fW 279 (376)
T KOG1520|consen 229 DGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE-G----------------------L------PGYPDNIRRDSTGHFW 279 (376)
T ss_pred CCCEEEEEeeccceeeeeEecCCccCchhhHhh-c----------------------C------CCCCcceeECCCCCEE
Confidence 987 8889998887666654322 222222221 0 0 1348889999999999
Q ss_pred EEc
Q psy4832 516 VAD 518 (770)
Q Consensus 516 vaD 518 (770)
|+=
T Consensus 280 Val 282 (376)
T KOG1520|consen 280 VAL 282 (376)
T ss_pred EEE
Confidence 984
No 24
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2.4e-06 Score=88.45 Aligned_cols=261 Identities=16% Similarity=0.196 Sum_probs=155.3
Q ss_pred ccccccccCceEEEEcCCC-CEEEEeC----c--eEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCc
Q psy4832 173 VARDARLLTPVALTSGPDG-SLYVGDF----N--LVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKH 244 (770)
Q Consensus 173 ~~~~~~l~~P~~la~~~dG-~lyv~d~----~--~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~ 244 (770)
......+.+|.-|++++++ .||+... + .-.+||++ |+.+-+ ......-..|.++++|+.+..||++....+
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-NRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-eccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 3345677899999999988 6898754 2 45677876 665543 322334456799999985558999999888
Q ss_pred EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC--eEEECC-CC
Q psy4832 245 QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN--IRVVSP-EG 320 (770)
Q Consensus 245 ~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~--Ir~id~-~G 320 (770)
.|.++.. ..+|.+..+.+.-.. .|.+ +-.+..-.+++..-++|+|+ |++.|-+. |..++. +|
T Consensus 112 ~v~v~p~-----~~dG~l~~~v~~~~h--------~g~~-p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 112 SVSVYPL-----QADGSLQPVVQVVKH--------TGSG-PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred eEEEEEc-----ccCCccccceeeeec--------CCCC-CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 8877643 334554333221111 1111 11111122467788899985 77778654 544432 67
Q ss_pred cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEc--CC-CcEEEEe---cCCC
Q psy4832 321 IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLT--ND-LKVKIVA---GIPL 391 (770)
Q Consensus 321 ~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~--~~-G~v~~va---G~~~ 391 (770)
++......... .=.-|.-|+|.| ++. .|+.. ++.|..+. +. |++..+- -.|.
T Consensus 178 ~L~~~~~~~v~------------------~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 178 KLTPADPAEVK------------------PGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred ccccccccccC------------------CCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 65443211100 011488999999 776 68776 67665555 42 5544332 2222
Q ss_pred CCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCc-EEEeecC
Q psy4832 392 HCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGR-MFDFAGR 469 (770)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~-i~~~aG~ 469 (770)
.. ..-.....|.++++|+ ||+++.+-+.| .+-.+++++. +.++.-.
T Consensus 239 dF-------------------------------~g~~~~aaIhis~dGrFLYasNRg~dsI-~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 239 DF-------------------------------TGTNWAAAIHISPDGRFLYASNRGHDSI-AVFSVDPDGGKLELVGIT 286 (346)
T ss_pred cc-------------------------------CCCCceeEEEECCCCCEEEEecCCCCeE-EEEEEcCCCCEEEEEEEe
Confidence 11 1123457899999998 99999887765 5667888754 4444322
Q ss_pred ccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEE-EcCCCceEEe
Q psy4832 470 WQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNV-ADQGSLHILA 526 (770)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyv-aD~~~~~I~~ 526 (770)
... -..|.+..+++.|.+.| +.+.+..|..
T Consensus 287 ~te---------------------------g~~PR~F~i~~~g~~Liaa~q~sd~i~v 317 (346)
T COG2706 287 PTE---------------------------GQFPRDFNINPSGRFLIAANQKSDNITV 317 (346)
T ss_pred ccC---------------------------CcCCccceeCCCCCEEEEEccCCCcEEE
Confidence 211 23488899999887654 5444443433
No 25
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.97 E-value=2.9e-07 Score=99.45 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=123.4
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEE
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAI 299 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIav 299 (770)
|..|..|++.| +|.|||++. .++|+.+. .+|.. ..+...... .+ .....+.|||+
T Consensus 1 L~~P~~~a~~p-dG~l~v~e~-~G~i~~~~-------~~g~~~~~v~~~~~v-------~~--------~~~~gllgia~ 56 (331)
T PF07995_consen 1 LNNPRSMAFLP-DGRLLVAER-SGRIWVVD-------KDGSLKTPVADLPEV-------FA--------DGERGLLGIAF 56 (331)
T ss_dssp ESSEEEEEEET-TSCEEEEET-TTEEEEEE-------TTTEECEEEEE-TTT-------BT--------STTBSEEEEEE
T ss_pred CCCceEEEEeC-CCcEEEEeC-CceEEEEe-------CCCcCcceecccccc-------cc--------cccCCccccee
Confidence 46799999998 799999998 79999994 44554 333322111 00 11235789999
Q ss_pred ccC----CcEEEEeCC----------CeEEECC-CC--c---EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEE
Q psy4832 300 KAD----KTMFIADGT----------NIRVVSP-EG--I---IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLAL 359 (770)
Q Consensus 300 d~~----G~lYvaD~~----------~Ir~id~-~G--~---i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~ 359 (770)
+++ +.||++-+. .|.++.. ++ . ...++-. .+.......+-..|++
T Consensus 57 ~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~---------------~p~~~~~~H~g~~l~f 121 (331)
T PF07995_consen 57 HPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTG---------------LPDTSSGNHNGGGLAF 121 (331)
T ss_dssp -TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEE---------------EES-CSSSS-EEEEEE
T ss_pred ccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEE---------------eCCCCCCCCCCccccC
Confidence 984 889988652 1444322 11 1 1112110 0000112334567999
Q ss_pred eCCCCeEEEEe---------------CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 360 SPLDDSLHFID---------------DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 360 d~~~g~lyv~D---------------~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
+| +|.|||+- .++|+||+++|++ ....|.... .+ .......
T Consensus 122 gp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~--p~dnP~~~~---~~------------------~~~~i~A 177 (331)
T PF07995_consen 122 GP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI--PADNPFVGD---DG------------------ADSEIYA 177 (331)
T ss_dssp -T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB---TTSTTTTS---TT------------------STTTEEE
T ss_pred CC-CCcEEEEeCCCCCcccccccccccceEEEecccCcC--CCCCccccC---CC------------------ceEEEEE
Confidence 99 99999984 1579999998852 122222100 00 0001123
Q ss_pred cccCCeeEEEEcCC-CCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCC---------CcccccCccCccc
Q psy4832 425 MDLGSLTALAFSPT-GDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTN---------CAEFEKNSKETLL 494 (770)
Q Consensus 425 ~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~---------~~~~~~~~~d~~~ 494 (770)
..|.+|.+++++|. |+||++|.+......|..+.+.+. .| -+.|.-.. +.+... ......
T Consensus 178 ~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~n----YG-----WP~~~~~~~~~~~~~~~~~~~~~-~~~P~~ 247 (331)
T PF07995_consen 178 YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGN----YG-----WPYCEGGPKYSGPPIGDAPSCPG-FVPPVF 247 (331)
T ss_dssp E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B-----------TTTBSSSCSTTSS-ECTGSS-TT-S---SE
T ss_pred eCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCc----CC-----CCCCcCCCCCCCCccccccCCCC-cCccce
Confidence 45889999999998 999999987655445555433221 12 12222110 000000 001111
Q ss_pred ccceecCCeeEEEEcC-------CCcEEEEcCCCceEEeeec
Q psy4832 495 TSTARFTSISALSVSP-------DGVVNVADQGSLHILALQH 529 (770)
Q Consensus 495 ~~~~~l~~P~giav~~-------dG~lyvaD~~~~~I~~i~~ 529 (770)
.-.+ -.+|.|+++-. .|.+++++.+..+|+++..
T Consensus 248 ~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~ 288 (331)
T PF07995_consen 248 AYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDL 288 (331)
T ss_dssp EETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEE
T ss_pred eecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEee
Confidence 0000 14699999863 5689999999889988754
No 26
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=9.7e-07 Score=91.30 Aligned_cols=215 Identities=18% Similarity=0.312 Sum_probs=135.1
Q ss_pred cCceEEEEcCCCC-EEEEeCc----eEEEEcCCCcEEEEeccC----c-----ccccceeEEEEeCCCCcEEEEeCCCcE
Q psy4832 180 LTPVALTSGPDGS-LYVGDFN----LVRRLTPEGNVFTVLQLS----A-----TQVSYQYYLALSPADGHLYISDAEKHQ 245 (770)
Q Consensus 180 ~~P~~la~~~dG~-lyv~d~~----~I~~i~~~G~v~~~~~~~----~-----~~~~~p~~lav~p~~g~lyvsd~~~~~ 245 (770)
..|..|++|++|. ||++..+ .+..+..+|.+..+.... . ..-.++...-++|....|++.|-+..|
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr 168 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR 168 (346)
T ss_pred CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce
Confidence 3469999999995 7777774 566667788876553321 1 112346678889966789999999999
Q ss_pred EEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC----eEEECCC-
Q psy4832 246 ILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN----IRVVSPE- 319 (770)
Q Consensus 246 I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~----Ir~id~~- 319 (770)
|..++.. +|.++...-. ...| | ..|+-|+|+|+|. .|+..--+ ++.+++.
T Consensus 169 i~~y~~~------dg~L~~~~~~--~v~~------G----------~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~ 224 (346)
T COG2706 169 IFLYDLD------DGKLTPADPA--EVKP------G----------AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAV 224 (346)
T ss_pred EEEEEcc------cCcccccccc--ccCC------C----------CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCC
Confidence 9888642 3433221100 0001 1 2599999999998 77765333 5566664
Q ss_pred CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEeC--C--EEEEEcCCCc-EEEEecCCCCC
Q psy4832 320 GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFIDD--R--VIFKLTNDLK-VKIVAGIPLHC 393 (770)
Q Consensus 320 G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D~--~--~I~~i~~~G~-v~~vaG~~~~~ 393 (770)
|++..+--... ++..-..-+|-..|.+++ +|+ ||+++. + .+++|++++. +..+.-.+.+.
T Consensus 225 g~~~~lQ~i~t-------------lP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg 290 (346)
T COG2706 225 GKFEELQTIDT-------------LPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEG 290 (346)
T ss_pred ceEEEeeeecc-------------CccccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCC
Confidence 66655432211 122222345778899999 775 899983 2 5788888854 44444333322
Q ss_pred CCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcEEEee
Q psy4832 394 RTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRMFDFA 467 (770)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i~~~a 467 (770)
..|++..++++|+ |++|-.++..| .+..+| .+|+++.+.
T Consensus 291 ----------------------------------~~PR~F~i~~~g~~Liaa~q~sd~i-~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 291 ----------------------------------QFPRDFNINPSGRFLIAANQKSDNI-TVFERDKETGRLTLLG 331 (346)
T ss_pred ----------------------------------cCCccceeCCCCCEEEEEccCCCcE-EEEEEcCCCceEEecc
Confidence 3499999999988 66666666655 344555 478876553
No 27
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.87 E-value=5.7e-07 Score=91.94 Aligned_cols=208 Identities=18% Similarity=0.268 Sum_probs=111.6
Q ss_pred ccCceEEEEcCC-CCEEEEeC--ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 179 LLTPVALTSGPD-GSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 179 l~~P~~la~~~d-G~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
...+.||+++|+ +.||.... ..|..++.+|++...+.. .++.-+.+|++- .++.+.+++-..+++..+......
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l--~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPL--DGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeC--CCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccc
Confidence 446899999996 56776544 489999999999877653 347789999998 477888888778888888542110
Q ss_pred cCCCC-cEEEE-ECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEeCCC---eEEECC--CC-cEEEee
Q psy4832 256 ADPSI-NWEVA-VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIADGTN---IRVVSP--EG-IIHTLI 326 (770)
Q Consensus 256 ~~~~g-~~~~v-aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD~~~---Ir~id~--~G-~i~t~~ 326 (770)
...+. .+..+ .+.... ++ ..-.|||.|+. +.||++.-.. |..++. .+ .+....
T Consensus 98 ~~~~~~~~~~~~l~~~~~------~N------------~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNK------GN------------KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TT--EEEEEEEE---S---------S------------S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred cccchhhceEEecccccC------CC------------cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 00000 01111 111000 00 12469999995 5688885443 555543 11 111111
Q ss_pred cCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCcccc
Q psy4832 327 GHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFK 404 (770)
Q Consensus 327 g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~ 404 (770)
... .......+.-|.+|+++|.+|.|||.. +++|..++.+|++....-...
T Consensus 160 ~~~--------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~------------- 212 (248)
T PF06977_consen 160 DQD--------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR------------- 212 (248)
T ss_dssp -HH--------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST-------------
T ss_pred ccc--------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC-------------
Confidence 000 011123455799999999899999987 689999999998654332110
Q ss_pred ccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCC
Q psy4832 405 DKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 405 ~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~ 448 (770)
+..+....+.+|.|||+|++|+|||+..-|
T Consensus 213 --------------g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 213 --------------GFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp --------------TGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred --------------cccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 001123457789999999999999998765
No 28
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.86 E-value=6.3e-07 Score=96.55 Aligned_cols=288 Identities=19% Similarity=0.155 Sum_probs=151.9
Q ss_pred ccccccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcE--------EEEecc------------CcccccceeEEEEe
Q psy4832 173 VARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNV--------FTVLQL------------SATQVSYQYYLALS 230 (770)
Q Consensus 173 ~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v--------~~~~~~------------~~~~~~~p~~lav~ 230 (770)
......|..|++++..|+|.+.|... .+++.+...+.. ...... -+.++..|.+++..
T Consensus 60 ~~~a~gLe~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~ 139 (399)
T COG2133 60 EVVAQGLEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP 139 (399)
T ss_pred ccccccccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEee
Confidence 33455689999999999997767665 467766432211 111111 03456778888886
Q ss_pred CCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC
Q psy4832 231 PADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG 310 (770)
Q Consensus 231 p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~ 310 (770)
.+.+|++... .+.++. .... ...+.-.++..... .. .++-..|+++++|.|||+=+
T Consensus 140 --~~~~~~~n~~--~~~~~~-~g~~-~l~~~~~i~~~lP~----------------~~--~H~g~~l~f~pDG~Lyvs~G 195 (399)
T COG2133 140 --GGGLYVANRV--AIGRLP-GGDT-KLSEPKVIFRGIPK----------------GG--HHFGGRLVFGPDGKLYVTTG 195 (399)
T ss_pred --cCCceEEEEE--EEEEcC-CCcc-ccccccEEeecCCC----------------CC--CcCcccEEECCCCcEEEEeC
Confidence 6778887653 455553 1100 11122222322111 00 33456899999999999843
Q ss_pred CC---------------eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEE
Q psy4832 311 TN---------------IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIF 375 (770)
Q Consensus 311 ~~---------------Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~ 375 (770)
.+ |.+++.++.+..-. ...........+++|.|++++|.+|.||++|+.+=.
T Consensus 196 ~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~-------------p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~ 262 (399)
T COG2133 196 SNGDPALAQDNVSLAGKVLRIDRAGIIPADN-------------PFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDA 262 (399)
T ss_pred CCCCcccccCccccccceeeeccCcccccCC-------------CCCCcceEEeccCCccceeecCCCCcEEEEecCCCc
Confidence 22 22333333221100 001122334568899999999977999999975400
Q ss_pred EEcCCCcEE----EEecCCCCCCCCCCC-CccccccccccccccccCCcccccccccCCeeEEEEcCC-------CCEEE
Q psy4832 376 KLTNDLKVK----IVAGIPLHCRTGDKD-KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT-------GDLYI 443 (770)
Q Consensus 376 ~i~~~G~v~----~vaG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~-------G~lyV 443 (770)
.+-+|-.-. ...|.|.... +... +....+ ...... ..........-..|.||+|-.. |.|||
T Consensus 263 ~~~~Deln~i~~G~nYGWP~~~~-G~~~~g~~~~~---~~~~~~--~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV 336 (399)
T COG2133 263 LRGPDELNSIRPGKNYGWPYAYF-GQNYDGRAIPD---GTVVAG--AIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFV 336 (399)
T ss_pred ccCcccccccccCCccCCceecc-CcccCccccCC---Cccccc--ccCCceeeccccccceeEEecCCcCccccCcEEE
Confidence 011221100 1233333221 1000 000000 000000 0000011122245799999632 68999
Q ss_pred EeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC-Cc
Q psy4832 444 ADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG-SL 522 (770)
Q Consensus 444 aD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~-~~ 522 (770)
+...+..+ ....++|....+...- +.... -.+|.+|++.+||.|||+|.. ++
T Consensus 337 ~~hgsw~~---~~~~~~g~~~~~~~~f-----------------------l~~d~-~gR~~dV~v~~DGallv~~D~~~g 389 (399)
T COG2133 337 GAHGSWPV---LRLRPDGNYKVVLTGF-----------------------LSGDL-GGRPRDVAVAPDGALLVLTDQGDG 389 (399)
T ss_pred EeecceeE---EEeccCCCcceEEEEE-----------------------EecCC-CCcccceEECCCCeEEEeecCCCC
Confidence 99998753 3466777643332111 00000 157999999999999998765 77
Q ss_pred eEEeeecC
Q psy4832 523 HILALQHY 530 (770)
Q Consensus 523 ~I~~i~~~ 530 (770)
+|+|+...
T Consensus 390 ~i~Rv~~~ 397 (399)
T COG2133 390 RILRVSYA 397 (399)
T ss_pred eEEEecCC
Confidence 99999754
No 29
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.77 E-value=1e-06 Score=90.15 Aligned_cols=209 Identities=14% Similarity=0.259 Sum_probs=109.9
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
...+.||+++|.++.||...-....|+.+ +.+|.+..-.-. .| +..|.||++-
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~el-------s~~G~vlr~i~l-----------~g---------~~D~EgI~y~ 73 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYEL-------SLDGKVLRRIPL-----------DG---------FGDYEGITYL 73 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEE-------ETT--EEEEEE------------SS----------SSEEEEEE-
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEE-------cCCCCEEEEEeC-----------CC---------CCCceeEEEE
Confidence 34589999999889999888888999999 456665332210 01 3468999998
Q ss_pred cCCcEEEEeCCC--eEEEC--CCCc-EEE-----e-ecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 301 ADKTMFIADGTN--IRVVS--PEGI-IHT-----L-IGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 301 ~~G~lYvaD~~~--Ir~id--~~G~-i~t-----~-~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
.+|.+.+++-.. +..++ .++. +.. + .+... ..=..-.|||+|+.++.||++
T Consensus 74 g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~N~G~EGla~D~~~~~L~v~ 135 (248)
T PF06977_consen 74 GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPN------------------KGNKGFEGLAYDPKTNRLFVA 135 (248)
T ss_dssp STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---------------------SS--EEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccccc------------------CCCcceEEEEEcCCCCEEEEE
Confidence 777777777432 54443 3321 111 1 11110 001124799999977889998
Q ss_pred e---CCEEEEEcC--C-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEE
Q psy4832 370 D---DRVIFKLTN--D-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLY 442 (770)
Q Consensus 370 D---~~~I~~i~~--~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~ly 442 (770)
- ..+|+.+.. . ..+....... .......+..|++|+++| .|.||
T Consensus 136 kE~~P~~l~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~d~S~l~~~p~t~~ll 186 (248)
T PF06977_consen 136 KERKPKRLYEVNGFPGGFDLFVSDDQD-----------------------------LDDDKLFVRDLSGLSYDPRTGHLL 186 (248)
T ss_dssp EESSSEEEEEEESTT-SS--EEEE-HH-----------------------------HH-HT--SS---EEEEETTTTEEE
T ss_pred eCCCChhhEEEccccCccceeeccccc-----------------------------cccccceeccccceEEcCCCCeEE
Confidence 6 235666653 1 1111111100 000122355699999998 68899
Q ss_pred EEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 443 IADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 443 VaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
|....+++ +-.+|.+|++....--. .+.......+..|.|||++++|+|||+.--|
T Consensus 187 iLS~es~~---l~~~d~~G~~~~~~~L~--------------------~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN- 242 (248)
T PF06977_consen 187 ILSDESRL---LLELDRQGRVVSSLSLD--------------------RGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN- 242 (248)
T ss_dssp EEETTTTE---EEEE-TT--EEEEEE-S--------------------TTGGG-SS---SEEEEEE-TT--EEEEETTT-
T ss_pred EEECCCCe---EEEECCCCCEEEEEEeC--------------------CcccCcccccCCccEEEECCCCCEEEEcCCc-
Confidence 99988875 67888999875443111 0011223357789999999999999987655
Q ss_pred eEEee
Q psy4832 523 HILAL 527 (770)
Q Consensus 523 ~I~~i 527 (770)
+.+++
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 30
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.70 E-value=4.4e-05 Score=84.51 Aligned_cols=32 Identities=25% Similarity=0.481 Sum_probs=28.3
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+..|..|.+|++.| +|+|||++...++|++++
T Consensus 26 a~GL~~Pw~maflP-DG~llVtER~~G~I~~v~ 57 (454)
T TIGR03606 26 LSGLNKPWALLWGP-DNQLWVTERATGKILRVN 57 (454)
T ss_pred ECCCCCceEEEEcC-CCeEEEEEecCCEEEEEe
Confidence 45789999999998 899999998778999995
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.66 E-value=0.00011 Score=77.73 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=130.3
Q ss_pred CceEEEEcCCCC-EEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGS-LYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
.|.+++++|+|. +|++.. +.|+.++.. ++....+.. ...+..++++|.+..+|++....++|..++..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~---- 103 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----GPDPELFALHPNGKILYIANEDDNLVTVIDIE---- 103 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC----CCCccEEEECCCCCEEEEEcCCCCeEEEEECC----
Confidence 367899999987 567654 588888854 555544321 12367889998666688887777788887421
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC--C-eEEECCC-CcEEEeecCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT--N-IRVVSPE-GIIHTLIGHHKHH 332 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~--~-Ir~id~~-G~i~t~~g~~~~~ 332 (770)
++........ -..|.+++++++|.++++... + +..++.. +.+......
T Consensus 104 --~~~~~~~~~~----------------------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---- 155 (300)
T TIGR03866 104 --TRKVLAEIPV----------------------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---- 155 (300)
T ss_pred --CCeEEeEeeC----------------------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc----
Confidence 1111111100 114788999999986654332 2 5555643 332211110
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe--CCEEEEEcCC-CcE-EEEecCCCCCCCCCCCCccccccc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID--DRVIFKLTND-LKV-KIVAGIPLHCRTGDKDKRDFKDKQ 407 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D--~~~I~~i~~~-G~v-~~vaG~~~~~~~~~~~~~~~~~~~ 407 (770)
-..|..+++++ ++. ||++. .+.|..++.. ++. ..+..... .
T Consensus 156 ------------------~~~~~~~~~s~-dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~-------------- 201 (300)
T TIGR03866 156 ------------------DQRPRFAEFTA-DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-G-------------- 201 (300)
T ss_pred ------------------CCCccEEEECC-CCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-c--------------
Confidence 11467899998 665 65653 4678888743 432 22211000 0
Q ss_pred cccccccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCccc
Q psy4832 408 SKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEF 485 (770)
Q Consensus 408 ~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~ 485 (770)
....-..|.+++++++|. +|++...+++ +..++. ++++......
T Consensus 202 ---------------~~~~~~~~~~i~~s~dg~~~~~~~~~~~~---i~v~d~~~~~~~~~~~~---------------- 247 (300)
T TIGR03866 202 ---------------VHPEAVQPVGIKLTKDGKTAFVALGPANR---VAVVDAKTYEVLDYLLV---------------- 247 (300)
T ss_pred ---------------cccccCCccceEECCCCCEEEEEcCCCCe---EEEEECCCCcEEEEEEe----------------
Confidence 000113478899999988 5887766654 455554 4444322210
Q ss_pred ccCccCcccccceecCCeeEEEEcCCCc-EEEEcCCCceEEeee
Q psy4832 486 EKNSKETLLTSTARFTSISALSVSPDGV-VNVADQGSLHILALQ 528 (770)
Q Consensus 486 ~~~~~d~~~~~~~~l~~P~giav~~dG~-lyvaD~~~~~I~~i~ 528 (770)
-..|.+++++|+|. ||++....+.|..++
T Consensus 248 --------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 248 --------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred --------------CCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 12367899999886 455554455555443
No 32
>PF03527 RHS: RHS protein; InterPro: IPR001826 RHS elements are proteins of non-essential function believed to play an important role in the natural ecology of the cell. The protein sequences comprise highly conserved 141 kDa domain containing multiple tandem 22-residue repeats, followed by divergent C-terminal domains [, ]. The 22 residue repeats contain a YD dipeptide which is the most strongly conserved motif of the repeat.
Probab=98.63 E-value=8.1e-09 Score=72.87 Aligned_cols=39 Identities=28% Similarity=0.573 Sum_probs=36.9
Q ss_pred EEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceEEecCC
Q psy4832 716 YYIATDQCGTPVMVFNQYGETVREIMRSPYGHIVYDSNP 754 (770)
Q Consensus 716 ~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~~~~~ 754 (770)
++|++|+.|+|.+++|++|++||+.+|++||+++.++.|
T Consensus 2 ~~yH~D~~GtP~~ltd~~G~~vW~a~y~~wG~~~~e~~~ 40 (41)
T PF03527_consen 2 YYYHTDHLGTPQELTDEDGNIVWRAEYDAWGNVLEETSP 40 (41)
T ss_pred eEEecCCCCCcHHHHHhcCceEEEEeechhhCcchhccC
Confidence 689999999999999999999999999999999988776
No 33
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=2.6e-05 Score=79.11 Aligned_cols=199 Identities=21% Similarity=0.243 Sum_probs=128.4
Q ss_pred ceEEEEcCCCCEEEEeCc---eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDFN---LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~~---~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
-.+++++|+-+-.++-.| .|..++.+|.+...+.+ ..+..|.+|+.- .+|..-++|...++++++.. ++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL--~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~v-----d~ 159 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL--TGFSDPETIEYI-GGNQFVIVDERDRALYLFTV-----DA 159 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc--cccCChhHeEEe-cCCEEEEEehhcceEEEEEE-----cC
Confidence 567899997654444443 89999999999988864 458899999998 47777778888888888865 44
Q ss_pred CCcEEEEE------CCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCC-cEEEeec
Q psy4832 259 SINWEVAV------GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEG-IIHTLIG 327 (770)
Q Consensus 259 ~g~~~~va------G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G-~i~t~~g 327 (770)
++.+.... |.... .+|| -.|+|.|+ +..+||+--.+ |.+++..- .+..-+.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k------~N~G------------fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~ 221 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNK------KNKG------------FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHAS 221 (316)
T ss_pred CccEEeccceEEeccccCC------CCcC------------ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccc
Confidence 44332221 11110 1232 35999998 55699987766 55554221 0100000
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCcEEE-Eec-CCCCCCCCCCCCccc
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLKVKI-VAG-IPLHCRTGDKDKRDF 403 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~-vaG-~~~~~~~~~~~~~~~ 403 (770)
.. -....+..+.--.|+.+++..+.|+|.. ++++..++.+|.+.- +.- .+.++
T Consensus 222 ~~-------------~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~g---------- 278 (316)
T COG3204 222 LD-------------PTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHG---------- 278 (316)
T ss_pred cC-------------cccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCC----------
Confidence 00 0011123355678999998788888865 789999999998532 221 11111
Q ss_pred cccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCC
Q psy4832 404 KDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~ 448 (770)
....+.+|.|||+|.+|+|||+..-|
T Consensus 279 -------------------L~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 279 -------------------LSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred -------------------CcccCCCcceeEECCCCCEEEEecCC
Confidence 23345679999999999999998765
No 34
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.48 E-value=0.0012 Score=69.55 Aligned_cols=220 Identities=15% Similarity=0.150 Sum_probs=119.6
Q ss_pred CCEEEEeC--ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEEC
Q psy4832 191 GSLYVGDF--NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVG 267 (770)
Q Consensus 191 G~lyv~d~--~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG 267 (770)
+++|++.. +.|++++. +++....+.. ...|.+++++|.+..+|++....+.|+.++. .++......-
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~----~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~------~~~~~~~~~~ 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV----GQRPRGITLSKDGKLLYVCASDSDTIQVIDL------ATGEVIGTLP 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC----CCCCCceEECCCCCEEEEEECCCCeEEEEEC------CCCcEEEecc
Confidence 35666654 47777775 4665555432 1346789999855568888887888888852 1233221110
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--CeEEECCCC-cEEEeecCCCCCCCcCCCccCCC
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--NIRVVSPEG-IIHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~Ir~id~~G-~i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
. -..|..++++++|. +|++... .|+.+|... .....+..
T Consensus 71 ~----------------------~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--------------- 113 (300)
T TIGR03866 71 S----------------------GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV--------------- 113 (300)
T ss_pred C----------------------CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---------------
Confidence 0 01356788998887 7776542 377777543 22111110
Q ss_pred cccccccccCcceEEEeCCCCeEEEE-eC--CEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 344 FPASTAQLQWPTGLALSPLDDSLHFI-DD--RVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g~lyv~-D~--~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
-..|.+++++| +|.++++ .. ..+..++.+ +++.....
T Consensus 114 -------~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~------------------------------- 154 (300)
T TIGR03866 114 -------GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL------------------------------- 154 (300)
T ss_pred -------CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-------------------------------
Confidence 01377899999 7776554 32 345555533 22211110
Q ss_pred ccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcE-EEeecCccCCCCCcCCCCCcccccCccCccccc
Q psy4832 420 VRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTS 496 (770)
Q Consensus 420 ~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 496 (770)
.-..|..++++++|. ||++....++ |+.++. +++. ..+.... .+ .
T Consensus 155 ------~~~~~~~~~~s~dg~~l~~~~~~~~~---v~i~d~~~~~~~~~~~~~~-~~----------------------~ 202 (300)
T TIGR03866 155 ------VDQRPRFAEFTADGKELWVSSEIGGT---VSVIDVATRKVIKKITFEI-PG----------------------V 202 (300)
T ss_pred ------cCCCccEEEECCCCCEEEEEcCCCCE---EEEEEcCcceeeeeeeecc-cc----------------------c
Confidence 002367899999988 5455433443 555664 3432 2221100 00 0
Q ss_pred ceecCCeeEEEEcCCCcE-EEEcCCCceEEeee
Q psy4832 497 TARFTSISALSVSPDGVV-NVADQGSLHILALQ 528 (770)
Q Consensus 497 ~~~l~~P~giav~~dG~l-yvaD~~~~~I~~i~ 528 (770)
...-..|.+++++|+|.. |++...+++|..++
T Consensus 203 ~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 203 HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred ccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 000124778999999864 77766666666554
No 35
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.47 E-value=0.00051 Score=73.98 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCccEEecccC----CCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCC-EEEEeC-----------ceEE
Q psy4832 139 DGSSLHLKHEF----PRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGS-LYVGDF-----------NLVR 202 (770)
Q Consensus 139 dG~~~~~~~~~----~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~-lyv~d~-----------~~I~ 202 (770)
++.++|+.+.. .+.|+++.+...+. + +.-.. =..|.++ +.|||. |||+.. +.|.
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v-~------g~i~~--G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~ 80 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRV-L------GMTDG--GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVE 80 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEE-E------EEEEc--cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEE
Confidence 45567776633 26777776543221 0 00000 1368886 889875 999876 5788
Q ss_pred EEcC-CCcEEEEeccCcc----cccceeEEEEeCCCCcEEEEeCC-CcEEEEEec
Q psy4832 203 RLTP-EGNVFTVLQLSAT----QVSYQYYLALSPADGHLYISDAE-KHQILRVLS 251 (770)
Q Consensus 203 ~i~~-~G~v~~~~~~~~~----~~~~p~~lav~p~~g~lyvsd~~-~~~I~~i~~ 251 (770)
.+|. ++++..-+.++.. -...|..++++|.+..|||++.. .+.|-.++.
T Consensus 81 v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 81 VIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL 135 (352)
T ss_pred EEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEEC
Confidence 9985 4666654444322 25677899999966689999976 788888863
No 36
>KOG1520|consensus
Probab=98.42 E-value=7.3e-06 Score=86.42 Aligned_cols=152 Identities=20% Similarity=0.192 Sum_probs=108.9
Q ss_pred eeeecCCCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC-------
Q psy4832 126 HHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF------- 198 (770)
Q Consensus 126 ~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~------- 198 (770)
+.=-.|-||.....|..+|++| ..--+..|.+.|...... -..+....+....++.++++|.||++|+
T Consensus 112 ~~CGRPLGl~f~~~ggdL~VaD-AYlGL~~V~p~g~~a~~l----~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~r 186 (376)
T KOG1520|consen 112 PLCGRPLGIRFDKKGGDLYVAD-AYLGLLKVGPEGGLAELL----ADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRR 186 (376)
T ss_pred cccCCcceEEeccCCCeEEEEe-cceeeEEECCCCCcceec----cccccCeeeeecCceeEcCCCeEEEeccccccchh
Confidence 4445799999999888999999 555556666665543221 1123346677788999999999999985
Q ss_pred ------------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEE
Q psy4832 199 ------------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAV 266 (770)
Q Consensus 199 ------------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~va 266 (770)
+|+.|+|+.-++++++ ..++..|+|++++|....+.++++...||.|+-..+ ..-|..++++
T Consensus 187 d~~~a~l~g~~~GRl~~YD~~tK~~~VL---ld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g---~k~gt~EvFa 260 (376)
T KOG1520|consen 187 DFVFAALEGDPTGRLFRYDPSTKVTKVL---LDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG---PKAGTSEVFA 260 (376)
T ss_pred heEEeeecCCCccceEEecCcccchhhh---hhcccccccccCCCCCCEEEEEeeccceeeeeEecC---CccCchhhHh
Confidence 2566777766666665 568999999999998888999999999999985432 1122333333
Q ss_pred CCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEe
Q psy4832 267 GSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD 309 (770)
Q Consensus 267 G~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD 309 (770)
-. +| ..|.-|..+++|.+||+-
T Consensus 261 ~~----LP-----------------G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 261 EG----LP-----------------GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred hc----CC-----------------CCCcceeECCCCCEEEEE
Confidence 10 11 258899999999999986
No 37
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=98.29 E-value=1.9e-06 Score=62.52 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=36.0
Q ss_pred cCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCCEEEE
Q psy4832 635 TNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQF 673 (770)
Q Consensus 635 ~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~~~~~ 673 (770)
..|+|+++++|+|.+++|.||+.|||++.++++|.+++|
T Consensus 3 ~~g~l~~~~~p~G~~~~~~YD~~Grl~~~tdp~g~~~~~ 41 (42)
T TIGR01643 3 AAGRLTGSTDADGTTTRYTYDAAGRLVEITDADGGSTRY 41 (42)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEe
Confidence 368999999999999999999999999999999987776
No 38
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.29 E-value=0.00016 Score=76.39 Aligned_cols=198 Identities=17% Similarity=0.179 Sum_probs=116.7
Q ss_pred ceEEEEcCCCCEEEEeCc--------------eEEEEcC-CCcEEEEeccCcc---cccceeEEEEeCCC-----CcEEE
Q psy4832 182 PVALTSGPDGSLYVGDFN--------------LVRRLTP-EGNVFTVLQLSAT---QVSYQYYLALSPAD-----GHLYI 238 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~~--------------~I~~i~~-~G~v~~~~~~~~~---~~~~p~~lav~p~~-----g~lyv 238 (770)
..++.+|+.|.|||.|.+ +|..+|. ++++...+..+.. .-+.-..|++|... +.+||
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 568999999999999962 6888885 4667666554432 34566889999643 47999
Q ss_pred EeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccccccccc---CcceEEEcc---CC-cEEEEeCC
Q psy4832 239 SDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLS---HPKGLAIKA---DK-TMFIADGT 311 (770)
Q Consensus 239 sd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~---~P~gIavd~---~G-~lYvaD~~ 311 (770)
+|.....|..++. .++....+...-..-.|....+. .++ ..|. ...||+..+ +| .||+..-.
T Consensus 83 tD~~~~glIV~dl------~~~~s~Rv~~~~~~~~p~~~~~~-i~g----~~~~~~dg~~gial~~~~~d~r~LYf~~ls 151 (287)
T PF03022_consen 83 TDSGGPGLIVYDL------ATGKSWRVLHNSFSPDPDAGPFT-IGG----ESFQWPDGIFGIALSPISPDGRWLYFHPLS 151 (287)
T ss_dssp EETTTCEEEEEET------TTTEEEEEETCGCTTS-SSEEEE-ETT----EEEEETTSEEEEEE-TTSTTS-EEEEEETT
T ss_pred eCCCcCcEEEEEc------cCCcEEEEecCCcceecccccee-ccC----ceEecCCCccccccCCCCCCccEEEEEeCC
Confidence 9999888888864 23333333322111000000000 001 1122 245678865 43 49998633
Q ss_pred --CeEEECC----CCcEEE---------eecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEE
Q psy4832 312 --NIRVVSP----EGIIHT---------LIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVI 374 (770)
Q Consensus 312 --~Ir~id~----~G~i~t---------~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I 374 (770)
+++++.. +..... .+|. +-....|+++|+ +|+||+++ .+.|
T Consensus 152 s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~---------------------k~~~s~g~~~D~-~G~ly~~~~~~~aI 209 (287)
T PF03022_consen 152 SRKLYRVPTSVLRDPSLSDAQALASQVQDLGD---------------------KGSQSDGMAIDP-NGNLYFTDVEQNAI 209 (287)
T ss_dssp -SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------------------------SECEEEEET-TTEEEEEECCCTEE
T ss_pred CCcEEEEEHHHhhCccccccccccccceeccc---------------------cCCCCceEEECC-CCcEEEecCCCCeE
Confidence 2666642 221111 1111 012346899999 99999999 6899
Q ss_pred EEEcCCC-----cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccc-cCCeeEEEEcC--CCCEEEEeC
Q psy4832 375 FKLTNDL-----KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMD-LGSLTALAFSP--TGDLYIADI 446 (770)
Q Consensus 375 ~~i~~~G-----~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-l~~P~giavd~--~G~lyVaD~ 446 (770)
.+.++++ .+.+++- +.. |..|.++++++ +|.|||...
T Consensus 210 ~~w~~~~~~~~~~~~~l~~-----------------------------------d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 210 GCWDPDGPYTPENFEILAQ-----------------------------------DPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTSB-GCCEEEEEE------------------------------------CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEEeCCCCcCccchheeEE-----------------------------------cCceeeccceeeeccccCceEEEEEC
Confidence 9999988 5555552 233 78999999999 999999875
Q ss_pred C
Q psy4832 447 D 447 (770)
Q Consensus 447 ~ 447 (770)
.
T Consensus 255 r 255 (287)
T PF03022_consen 255 R 255 (287)
T ss_dssp S
T ss_pred c
Confidence 3
No 39
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.20 E-value=0.00019 Score=75.71 Aligned_cols=212 Identities=20% Similarity=0.279 Sum_probs=117.8
Q ss_pred ceeEEEEeCCCCcEEEEeCCC------------cEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCccccccc
Q psy4832 223 YQYYLALSPADGHLYISDAEK------------HQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAK 290 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~------------~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~ 290 (770)
..+++.+|+ .|.|||.|.+. .+|..++.. ++.+....-...... ..
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~------t~~li~~~~~p~~~~---------------~~ 59 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLK------TNQLIRRYPFPPDIA---------------PP 59 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETT------TTCEEEEEE--CCCS----------------T
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECC------CCcEEEEEECChHHc---------------cc
Confidence 357889994 99999999874 377777532 222222111111100 01
Q ss_pred ccCcceEEEcc-C-----CcEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCc---ceEE
Q psy4832 291 LSHPKGLAIKA-D-----KTMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP---TGLA 358 (770)
Q Consensus 291 l~~P~gIavd~-~-----G~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P---~gla 358 (770)
-.....|+||. + +.+||+|... |.++| .+|+...+.... +.|.|+..........|.++ .||+
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~-----~~~~p~~~~~~i~g~~~~~~dg~~gia 134 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNS-----FSPDPDAGPFTIGGESFQWPDGIFGIA 134 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCG-----CTTS-SSEEEEETTEEEEETTSEEEEE
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCC-----cceeccccceeccCceEecCCCccccc
Confidence 22456788886 2 4699999886 88888 457777766542 33444433333333445554 4578
Q ss_pred EeCCC---CeEEEEe--CCEEEEEcC----CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCC
Q psy4832 359 LSPLD---DSLHFID--DRVIFKLTN----DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGS 429 (770)
Q Consensus 359 ~d~~~---g~lyv~D--~~~I~~i~~----~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 429 (770)
++|.+ ..||+.- +..++++.. +.....-.- . ...+. ... .....
T Consensus 135 l~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~------------------~----~~~v~---~lG--~k~~~ 187 (287)
T PF03022_consen 135 LSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQA------------------L----ASQVQ---DLG--DKGSQ 187 (287)
T ss_dssp E-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-------------------H----HHT-E---EEE--E---S
T ss_pred cCCCCCCccEEEEEeCCCCcEEEEEHHHhhCcccccccc------------------c----cccce---ecc--ccCCC
Confidence 87633 3599987 467888762 111100000 0 00000 000 00124
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCC-----cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCee
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTG-----RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSIS 504 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G-----~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~ 504 (770)
..|+++|++|+||+++...+. |...++++ .+.+++-.. -.|..|.
T Consensus 188 s~g~~~D~~G~ly~~~~~~~a---I~~w~~~~~~~~~~~~~l~~d~---------------------------~~l~~pd 237 (287)
T PF03022_consen 188 SDGMAIDPNGNLYFTDVEQNA---IGCWDPDGPYTPENFEILAQDP---------------------------RTLQWPD 237 (287)
T ss_dssp ECEEEEETTTEEEEEECCCTE---EEEEETTTSB-GCCEEEEEE-C---------------------------C-GSSEE
T ss_pred CceEEECCCCcEEEecCCCCe---EEEEeCCCCcCccchheeEEcC---------------------------ceeeccc
Confidence 589999999999999999875 67777877 455555211 2388899
Q ss_pred EEEEcC--CCcEEEEc
Q psy4832 505 ALSVSP--DGVVNVAD 518 (770)
Q Consensus 505 giav~~--dG~lyvaD 518 (770)
++++++ +|.||+.-
T Consensus 238 ~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 238 GLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EEEE-T--TS-EEEEE
T ss_pred eeeeccccCceEEEEE
Confidence 999999 99999975
No 40
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.14 E-value=0.00066 Score=73.56 Aligned_cols=265 Identities=19% Similarity=0.248 Sum_probs=141.0
Q ss_pred eecCCCeEEECCCccEEecccCCCeEEEEeccCccCC-c------cCCCCCcc-------cccccccCceEEEEcCCCCE
Q psy4832 128 YNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRP-L------VCKDCDGV-------ARDARLLTPVALTSGPDGSL 193 (770)
Q Consensus 128 ~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~-~------~~~~~~g~-------~~~~~l~~P~~la~~~dG~l 193 (770)
|+.|.+++..+|| .+.+....++.+..+...+...+ . .....+|. .....+..|.+++. +.+.+
T Consensus 66 Le~p~~~~~lP~G-~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~-~~~~~ 143 (399)
T COG2133 66 LEHPWGLARLPDG-VLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISE-PGGGL 143 (399)
T ss_pred ccCchhheecCCc-eEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeeeEEEe-ecCCc
Confidence 7788889999999 66666633355555442221110 0 00011111 12556778888888 46778
Q ss_pred EEEeCceEEEEcCCC--cEE---EEe-ccCcccccceeEEEEeCCCCcEEEEeCCC-------------cEEEEEeccCC
Q psy4832 194 YVGDFNLVRRLTPEG--NVF---TVL-QLSATQVSYQYYLALSPADGHLYISDAEK-------------HQILRVLSLES 254 (770)
Q Consensus 194 yv~d~~~I~~i~~~G--~v~---~~~-~~~~~~~~~p~~lav~p~~g~lyvsd~~~-------------~~I~~i~~~~~ 254 (770)
|++....+.+++ .| ++. .++ .++.....+-..|+++| +|.|||+--.+ ++|+++.
T Consensus 144 ~~~n~~~~~~~~-~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~---- 217 (399)
T COG2133 144 YVANRVAIGRLP-GGDTKLSEPKVIFRGIPKGGHHFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRID---- 217 (399)
T ss_pred eEEEEEEEEEcC-CCccccccccEEeecCCCCCCcCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeec----
Confidence 888776777776 33 222 222 22223334456899998 78999986654 2333331
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC-CcEEEEeCCC--eEEEC-----CCCcE----
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD-KTMFIADGTN--IRVVS-----PEGII---- 322 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~-G~lYvaD~~~--Ir~id-----~~G~i---- 322 (770)
..+.+ +.+ ..+.+..-...-+.+|.|+++++. |.||+++.+. ++--| ..|..
T Consensus 218 ---~a~~~-----------~~d--~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP 281 (399)
T COG2133 218 ---RAGII-----------PAD--NPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWP 281 (399)
T ss_pred ---cCccc-----------ccC--CCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCc
Confidence 11111 000 001112223334678999999995 9999999776 32111 11211
Q ss_pred -EEeecCCCCCCCcCCCccCCC-c--ccccccc-----cCcceEEEeCCC------CeEEEEe--CCEEEEEcCCCcEEE
Q psy4832 323 -HTLIGHHKHHNIWSPFNCHRS-F--PASTAQL-----QWPTGLALSPLD------DSLHFID--DRVIFKLTNDLKVKI 385 (770)
Q Consensus 323 -~t~~g~~~~~~~~~p~~~~~~-~--~~~~~~l-----~~P~gla~d~~~------g~lyv~D--~~~I~~i~~~G~v~~ 385 (770)
.+ +|... .+..-.+. . ...+..+ ..|.||+|-.-+ +.|||+. +-.+.+..++|..+.
T Consensus 282 ~~~-~G~~~-----~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~ 355 (399)
T COG2133 282 YAY-FGQNY-----DGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKV 355 (399)
T ss_pred eec-cCccc-----CccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcce
Confidence 11 11110 11100000 0 0001111 246899998412 6899987 345777888887554
Q ss_pred EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCC-CCceee
Q psy4832 386 VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADID-ARKVNA 453 (770)
Q Consensus 386 vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~-~~ri~~ 453 (770)
+...-... ..-..|.+|++.+||.|||+|-. +.+|.|
T Consensus 356 ~~~~fl~~-------------------------------d~~gR~~dV~v~~DGallv~~D~~~g~i~R 393 (399)
T COG2133 356 VLTGFLSG-------------------------------DLGGRPRDVAVAPDGALLVLTDQGDGRILR 393 (399)
T ss_pred EEEEEEec-------------------------------CCCCcccceEECCCCeEEEeecCCCCeEEE
Confidence 43210000 00146999999999999999987 445433
No 41
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=98.12 E-value=5e-06 Score=58.71 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=31.4
Q ss_pred cCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCC
Q psy4832 635 TNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGN 669 (770)
Q Consensus 635 ~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~ 669 (770)
..|+|++++++.|.+++|+||+.|||++.+|+.|.
T Consensus 3 ~~G~l~~~~d~~G~~~~y~YD~~g~l~~~t~~~G~ 37 (38)
T PF05593_consen 3 ANGRLTSVTDPDGRTTRYTYDAAGRLTSVTDPDGR 37 (38)
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCCEEEEECCCCc
Confidence 47899999999999999999999999999999885
No 42
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.11 E-value=0.0083 Score=64.72 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=68.8
Q ss_pred CCEEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC---------CCcEEEEEeccCC
Q psy4832 191 GSLYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA---------EKHQILRVLSLES 254 (770)
Q Consensus 191 G~lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~---------~~~~I~~i~~~~~ 254 (770)
..+||.|. ++|..||.+ +++...+.. -..|.++ ++|....||++.+ ....|..++..
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~----G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-- 85 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDG----GFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-- 85 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEc----cCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc--
Confidence 35777765 478888864 555554432 1368886 9998889999999 78888888532
Q ss_pred ccCCCCcEE--EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--C-eEEECC-CCcEEEee
Q psy4832 255 VADPSINWE--VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--N-IRVVSP-EGIIHTLI 326 (770)
Q Consensus 255 ~~~~~g~~~--~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~-Ir~id~-~G~i~t~~ 326 (770)
++... +..+... .......|..++++++|. |||++.. + +-++|. .+++..-+
T Consensus 86 ----t~~~~~~i~~p~~p----------------~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 86 ----THLPIADIELPEGP----------------RFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred ----cCcEEeEEccCCCc----------------hhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 22221 1111100 011244688999999996 9998743 3 888884 45555434
No 43
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.10 E-value=5.3e-06 Score=54.15 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.8
Q ss_pred cCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 500 FTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
|+.|.|||++++|.|||+|.+|+||+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 5679999999999999999999999864
No 44
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.09 E-value=0.0012 Score=67.76 Aligned_cols=234 Identities=15% Similarity=0.163 Sum_probs=122.5
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc--CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA--DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPK 295 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~--~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~ 295 (770)
...+..|+||++.| .+.+||+|.+.+....++...... .+.--+..+.+.+ +. ..-..|.
T Consensus 19 Dp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~--------~~---------~~~~~PT 80 (336)
T TIGR03118 19 DPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP--------PL---------AAEGTPT 80 (336)
T ss_pred CccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCC--------CC---------CCCCCcc
Confidence 45788999999998 889999999988887774321100 0000011111100 00 1122589
Q ss_pred eEEEccCCcEEEEeCCC---e--EEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCC--CCeEEE
Q psy4832 296 GLAIKADKTMFIADGTN---I--RVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPL--DDSLHF 368 (770)
Q Consensus 296 gIavd~~G~lYvaD~~~---I--r~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~--~g~lyv 368 (770)
||++......-|+.... . .....+|.|+-..+.-..... . +..-..+.. ..-.-=.|||+-.. .+.||.
T Consensus 81 GiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~-~--~~~~~~d~s-~~gavYkGLAi~~~~~~~~LYa 156 (336)
T TIGR03118 81 GQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRM-T--RAEIVVDAS-QQGNVYKGLAVGPTGGGDYLYA 156 (336)
T ss_pred EEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccc-c--ccEEEEccC-CCcceeeeeEEeecCCCceEEE
Confidence 99997533322333221 1 123456766654432111000 0 000000000 00001146777642 457999
Q ss_pred Ee--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC
Q psy4832 369 ID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI 446 (770)
Q Consensus 369 ~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~ 446 (770)
+| +++|..++.+-+...+.|...... .++ =..|.+|.. -.++|||+=.
T Consensus 157 adF~~g~IDVFd~~f~~~~~~g~F~DP~-------------------------iPa----gyAPFnIqn-ig~~lyVtYA 206 (336)
T TIGR03118 157 ANFRQGRIDVFKGSFRPPPLPGSFIDPA-------------------------LPA----GYAPFNVQN-LGGTLYVTYA 206 (336)
T ss_pred eccCCCceEEecCccccccCCCCccCCC-------------------------CCC----CCCCcceEE-ECCeEEEEEE
Confidence 99 788988875543222223211110 011 134777754 3578999743
Q ss_pred CCCc----------eeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcC------
Q psy4832 447 DARK----------VNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP------ 510 (770)
Q Consensus 447 ~~~r----------i~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~------ 510 (770)
.... .-.|..+|++|.+..- +++...|+.|.|||+.|
T Consensus 207 ~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r---------------------------~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 207 QQDADRNDEVAGAGLGYVNVFTLNGQLLRR---------------------------VASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred ecCCcccccccCCCcceEEEEcCCCcEEEE---------------------------eccCCcccCCceeeeChhhhCCC
Confidence 2110 0125556666654331 12345699999999976
Q ss_pred CCcEEEEcCCCceEEeeecC
Q psy4832 511 DGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 511 dG~lyvaD~~~~~I~~i~~~ 530 (770)
.|.|+|..-+.++|-.+++.
T Consensus 260 sg~lLVGNFGDG~InaFD~~ 279 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQ 279 (336)
T ss_pred CCCeEEeecCCceeEEecCC
Confidence 56899999999999888764
No 45
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.04 E-value=0.0024 Score=70.03 Aligned_cols=184 Identities=17% Similarity=0.236 Sum_probs=97.0
Q ss_pred EEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCC
Q psy4832 193 LYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSG 269 (770)
Q Consensus 193 lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g 269 (770)
+||++. +.|..||.+ .++...+..+ ..-+.+++++|.+..+|++.. .+.|.+|+.. ++.+..-.-.|
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~---~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~------~~~~v~~i~~G 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTG---GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLA------TGKVVATIKVG 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-S---TTEEEEEE-TT-SSEEEEEET-TSEEEEEETT------SSSEEEEEE-S
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCC---CCceeEEEecCCCCEEEEEcC-CCeEEEEECC------cccEEEEEecC
Confidence 446665 688888854 5666655422 122566888875557999986 4789999642 23322111111
Q ss_pred ccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC--CeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcc
Q psy4832 270 ERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT--NIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFP 345 (770)
Q Consensus 270 ~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~--~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~ 345 (770)
..|.+|+++++|. +|++... .+..+|.. .++...+..+....
T Consensus 78 ----------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~------------ 123 (369)
T PF02239_consen 78 ----------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV------------ 123 (369)
T ss_dssp ----------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T------------
T ss_pred ----------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc------------
Confidence 1488999999997 7777643 38888854 44333332221100
Q ss_pred cccccccCcceEEEeCCCCeEEEEe---CCEEEEEcCC-Cc-EE-EEecCCCCCCCCCCCCccccccccccccccccCCc
Q psy4832 346 ASTAQLQWPTGLALSPLDDSLHFID---DRVIFKLTND-LK-VK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDS 419 (770)
Q Consensus 346 ~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~~i~~~-G~-v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (770)
...-..+.+|..++ ....||.. .++|+.++.. .. +. .....
T Consensus 124 --~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~------------------------------ 170 (369)
T PF02239_consen 124 --DGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV------------------------------ 170 (369)
T ss_dssp --TTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------------------------------
T ss_pred --cccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecc------------------------------
Confidence 00111345677777 55555543 5889888833 21 11 11110
Q ss_pred ccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcC-CCcE
Q psy4832 420 VRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVIDS-TGRM 463 (770)
Q Consensus 420 ~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~-~G~i 463 (770)
=..|++..++|+|+ ++++-..++ .|-.+|. .+++
T Consensus 171 -------g~~~~D~~~dpdgry~~va~~~sn---~i~viD~~~~k~ 206 (369)
T PF02239_consen 171 -------GRFPHDGGFDPDGRYFLVAANGSN---KIAVIDTKTGKL 206 (369)
T ss_dssp --------TTEEEEEE-TTSSEEEEEEGGGT---EEEEEETTTTEE
T ss_pred -------cccccccccCcccceeeecccccc---eeEEEeeccceE
Confidence 13589999999998 455555544 4666664 4444
No 46
>KOG0318|consensus
Probab=98.03 E-value=0.028 Score=61.30 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=40.4
Q ss_pred ceeeeeecCCCeEEECCCccEEecccCCCeEEEEec-cCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC
Q psy4832 123 DVHHHYNFHEGILQKGDGSSLHLKHEFPRTVSVVMG-TGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF 198 (770)
Q Consensus 123 ~~~~~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~ 198 (770)
..|++ +-+.+-|.+||+ .|++-...++|..+.| +|..- |.-.+..+ ---.-.+|+..||+.=+.+-.
T Consensus 187 r~Hsk--FV~~VRysPDG~-~Fat~gsDgki~iyDGktge~v---g~l~~~~a---HkGsIfalsWsPDs~~~~T~S 254 (603)
T KOG0318|consen 187 REHSK--FVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKV---GELEDSDA---HKGSIFALSWSPDSTQFLTVS 254 (603)
T ss_pred ccccc--ceeeEEECCCCC-eEEEecCCccEEEEcCCCccEE---EEecCCCC---ccccEEEEEECCCCceEEEec
Confidence 34555 678899999996 5665547888888877 34432 11111111 222346788888887665443
No 47
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.93 E-value=4.8e-05 Score=64.49 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=51.5
Q ss_pred EEEEcCC-CCEEEEeC-------------------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCC
Q psy4832 184 ALTSGPD-GSLYVGDF-------------------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEK 243 (770)
Q Consensus 184 ~la~~~d-G~lyv~d~-------------------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~ 243 (770)
+|+++++ |.||++|. +|+.+++|..+.++++ ..++..|+||++++.+..|+|+++..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl---~~~L~fpNGVals~d~~~vlv~Et~~ 78 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVL---LDGLYFPNGVALSPDESFVLVAETGR 78 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEE---EEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEe---hhCCCccCeEEEcCCCCEEEEEeccC
Confidence 6889998 99999995 3799999987777666 45799999999998777799999999
Q ss_pred cEEEEEe
Q psy4832 244 HQILRVL 250 (770)
Q Consensus 244 ~~I~~i~ 250 (770)
+||.|+-
T Consensus 79 ~Ri~ryw 85 (89)
T PF03088_consen 79 YRILRYW 85 (89)
T ss_dssp TEEEEEE
T ss_pred ceEEEEE
Confidence 9999984
No 48
>COG3209 RhsA Rhs family protein [Cell envelope biogenesis, outer membrane]
Probab=97.90 E-value=8.6e-05 Score=90.39 Aligned_cols=128 Identities=22% Similarity=0.314 Sum_probs=94.8
Q ss_pred cCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEe---
Q psy4832 635 TNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQM--- 711 (770)
Q Consensus 635 ~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~--- 711 (770)
....++....+.++...|.||..++|+.+....+....|.|.......+ .+....+.|+..|+......
T Consensus 466 ~~~~~~~~~~~~~~~~~~~yd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~ 537 (796)
T COG3209 466 TDLIRVEYDASGGRSTSYRYDGAGRLVTKSGAEGTDVTGQYGLVADLDG--------LGETTAWTYDQDGLAVEATIQPE 537 (796)
T ss_pred cccceeEEecCCCcceEEeeccccceeeeccCCcCceeccccchhcccc--------chhhheeehhccCchHHhhccCC
Confidence 3455666788899999999999999999999988777776655544422 24678888888876554443
Q ss_pred -------cCcEEEEEeCCCCCeEEEEcCCCCEEEEEEe-CCCCceE---EecCCceeeeeccCc-cccCCC
Q psy4832 712 -------FRHKYYIATDQCGTPVMVFNQYGETVREIMR-SPYGHIV---YDSNPYIYLPIDFCG-GLLDQE 770 (770)
Q Consensus 712 -------~~~~~~~~~d~~G~~~~~~d~~G~~v~~~~y-d~~G~~~---~~~~~~~~~p~~~~G-~~~d~~ 770 (770)
..+.++..+|+.|+|.+++|++|+++|+.+| +.||.+. ......+..+.++.| |++|.|
T Consensus 538 ~~~~~~~~~~~~~~~~d~~G~~~~~~~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~q~~d~e 608 (796)
T COG3209 538 GQDTPARLTQLYYTYDDHLGTPLVLTDGDGTTVWRYRYYDAGGALLLVNENNGALLRQYYRLGGPQQLDAE 608 (796)
T ss_pred CcceeeccceeEEEecCCCCCcceEEcCCCceEEEeccccccCccccccCCCceeeeEeeccCccceeeec
Confidence 1244445578899999999999999999765 5555533 334455888999999 999876
No 49
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.84 E-value=2.5e-05 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.8
Q ss_pred cCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 427 LGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 427 l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
|..|.|||++++|+|||||++++||
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV 25 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRV 25 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEE
Confidence 4679999999999999999999975
No 50
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.83 E-value=0.0064 Score=62.56 Aligned_cols=222 Identities=15% Similarity=0.100 Sum_probs=120.1
Q ss_pred ccccccCceEEEEcCCCCEEEEeCc--eEEEEcCC-----CcE----EEEec-cCcccccceeEEEEeCCCCcEEEEeCC
Q psy4832 175 RDARLLTPVALTSGPDGSLYVGDFN--LVRRLTPE-----GNV----FTVLQ-LSATQVSYQYYLALSPADGHLYISDAE 242 (770)
Q Consensus 175 ~~~~l~~P~~la~~~dG~lyv~d~~--~I~~i~~~-----G~v----~~~~~-~~~~~~~~p~~lav~p~~g~lyvsd~~ 242 (770)
.+..|.+||+|++.|.|-+||+|.+ ....++.+ |.- .++-. .+......|.|+.+.. ....-|+...
T Consensus 18 tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g 96 (336)
T TIGR03118 18 VDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEG 96 (336)
T ss_pred cCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCC
Confidence 4678999999999999999999973 55666554 322 12211 1122456799999984 3333233211
Q ss_pred CcEE--EEEeccCCccCCCCcEEEEECCCccc--cCCCCCCcCCCcccccccccCcceEEEccC---CcEEEEeCCC--e
Q psy4832 243 KHQI--LRVLSLESVADPSINWEVAVGSGERC--IPGDETNCGDNGPALAAKLSHPKGLAIKAD---KTMFIADGTN--I 313 (770)
Q Consensus 243 ~~~I--~~i~~~~~~~~~~g~~~~vaG~g~~~--~p~~~~~~g~~g~~~~a~l~~P~gIavd~~---G~lYvaD~~~--I 313 (770)
.... +.+. ..+|.+.-....-... .+.. ..-|.+ ..-.-=+|+|+... ..||.+|..+ |
T Consensus 97 ~~~~a~Fif~------tEdGTisaW~p~v~~t~~~~~~--~~~d~s----~~gavYkGLAi~~~~~~~~LYaadF~~g~I 164 (336)
T TIGR03118 97 ITGPSRFLFV------TEDGTLSGWAPALGTTRMTRAE--IVVDAS----QQGNVYKGLAVGPTGGGDYLYAANFRQGRI 164 (336)
T ss_pred cccceeEEEE------eCCceEEeecCcCCcccccccE--EEEccC----CCcceeeeeEEeecCCCceEEEeccCCCce
Confidence 1100 1111 2333333222110000 0000 000000 00011257777643 4599999876 8
Q ss_pred EEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe---------------CCEEEEEc
Q psy4832 314 RVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID---------------DRVIFKLT 378 (770)
Q Consensus 314 r~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---------------~~~I~~i~ 378 (770)
.++|.+-.-.++.|. |. +...++ .+ .|.+|..- .++|||+= .+.|-+++
T Consensus 165 DVFd~~f~~~~~~g~------F~----DP~iPa---gy-APFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd 228 (336)
T TIGR03118 165 DVFKGSFRPPPLPGS------FI----DPALPA---GY-APFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFT 228 (336)
T ss_pred EEecCccccccCCCC------cc----CCCCCC---CC-CCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEc
Confidence 888765332222222 11 111121 22 47777655 89999982 14577777
Q ss_pred CCCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC------CCCEEEEeCCCCce
Q psy4832 379 NDLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP------TGDLYIADIDARKV 451 (770)
Q Consensus 379 ~~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~------~G~lyVaD~~~~ri 451 (770)
.+|++. .++ ....|+.|.|||+.| .|.|.|...+..+
T Consensus 229 ~~G~l~~r~a-----------------------------------s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~- 272 (336)
T TIGR03118 229 LNGQLLRRVA-----------------------------------SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGT- 272 (336)
T ss_pred CCCcEEEEec-----------------------------------cCCcccCCceeeeChhhhCCCCCCeEEeecCCce-
Confidence 777643 343 234588999999965 5789999999886
Q ss_pred eeEEEEcC-CCcE
Q psy4832 452 NALRVIDS-TGRM 463 (770)
Q Consensus 452 ~~i~~i~~-~G~i 463 (770)
|..+|+ +|+.
T Consensus 273 --InaFD~~sG~~ 283 (336)
T TIGR03118 273 --INAYDPQSGAQ 283 (336)
T ss_pred --eEEecCCCCce
Confidence 567776 4653
No 51
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.82 E-value=9.7e-05 Score=62.61 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=45.6
Q ss_pred ceEEEeCCCCeEEEEeC-------------------CEEEEEcCCC-cEEEEecCCCCCCCCCCCCcccccccccccccc
Q psy4832 355 TGLALSPLDDSLHFIDD-------------------RVIFKLTNDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKST 414 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D~-------------------~~I~~i~~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (770)
.+|+|++.+|.|||+|. +++++++|.. ++++++.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-------------------------- 54 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-------------------------- 54 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE--------------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh--------------------------
Confidence 37899983399999992 6899999764 5556552
Q ss_pred ccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeE
Q psy4832 415 VQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNAL 454 (770)
Q Consensus 415 ~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i 454 (770)
.|..|+||++++++. |+|+|+..+||.|.
T Consensus 55 -----------~L~fpNGVals~d~~~vlv~Et~~~Ri~ry 84 (89)
T PF03088_consen 55 -----------GLYFPNGVALSPDESFVLVAETGRYRILRY 84 (89)
T ss_dssp -----------EESSEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred -----------CCCccCeEEEcCCCCEEEEEeccCceEEEE
Confidence 367899999999998 99999999876544
No 52
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.0041 Score=63.49 Aligned_cols=215 Identities=14% Similarity=0.211 Sum_probs=123.2
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~ 302 (770)
.-.+|+++|.+..||..-.....|..+ +.+|.+...+-. .-|..|.+|+.-.+
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVEl-------t~~GdlirtiPL--------------------~g~~DpE~Ieyig~ 139 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVEL-------TKEGDLIRTIPL--------------------TGFSDPETIEYIGG 139 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEE-------ecCCceEEEecc--------------------cccCChhHeEEecC
Confidence 357899999888888877777789888 566765443310 11567999999866
Q ss_pred CcEEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe---CCEEE
Q psy4832 303 KTMFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID---DRVIF 375 (770)
Q Consensus 303 G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~I~ 375 (770)
|..-++|-.. +..+++++.+....-.. .. + +. ..-.... -.|+|.||.+..|||+- .-+|+
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~-i~-----L--~~-~~k~N~G---fEGlA~d~~~~~l~~aKEr~P~~I~ 207 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQK-IP-----L--GT-TNKKNKG---FEGLAWDPVDHRLFVAKERNPIGIF 207 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceE-Ee-----c--cc-cCCCCcC---ceeeecCCCCceEEEEEccCCcEEE
Confidence 5555666443 44466776544332100 00 0 00 0000112 35999999888899996 24666
Q ss_pred EEcCCC-cEEEEe-cCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEEeCCCCcee
Q psy4832 376 KLTNDL-KVKIVA-GIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIADIDARKVN 452 (770)
Q Consensus 376 ~i~~~G-~v~~va-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~ 452 (770)
+++..- .+..-+ ..+.. ...-.+..-+|+.+++ .|.|+|-...+++
T Consensus 208 ~~~~~~~~l~~~~~~~~~~-----------------------------~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-- 256 (316)
T COG3204 208 EVTQSPSSLSVHASLDPTA-----------------------------DRDLFVLDVSGLEFNAITNSLLVLSDESRR-- 256 (316)
T ss_pred EEecCCcccccccccCccc-----------------------------ccceEeeccccceecCCCCcEEEEecCCce--
Confidence 665211 011000 00000 0011245568899996 6788888777764
Q ss_pred eEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 453 ALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 453 ~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
+..++.+|.+....--. . +.. ........|.|||.|.+|+|||+---| ...++.+
T Consensus 257 -l~Evd~~G~~~~~lsL~-~-----------------g~~--gL~~dipqaEGiamDd~g~lYIvSEPn-lfy~F~~ 311 (316)
T COG3204 257 -LLEVDLSGEVIELLSLT-K-----------------GNH--GLSSDIPQAEGIAMDDDGNLYIVSEPN-LFYRFTP 311 (316)
T ss_pred -EEEEecCCCeeeeEEec-c-----------------CCC--CCcccCCCcceeEECCCCCEEEEecCC-cceeccc
Confidence 67888888753321100 0 011 112235679999999999999986554 3344433
No 53
>KOG0291|consensus
Probab=97.80 E-value=0.037 Score=62.88 Aligned_cols=270 Identities=19% Similarity=0.225 Sum_probs=158.4
Q ss_pred CCCeEEEEecc--CccCCccCCCCCccc------------ccccccCceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEE
Q psy4832 149 FPRTVSVVMGT--GLQRPLVCKDCDGVA------------RDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPE-GNVF 211 (770)
Q Consensus 149 ~~~~i~~v~g~--G~~~~~~~~~~~g~~------------~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~ 211 (770)
....|.+++-+ |..-.+-|+.-+... ..+.+..-..+++.|||.+.++-. ++|+.++.. |--.
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 44566666544 555555454422211 133467778999999999988644 689988854 4433
Q ss_pred EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccc
Q psy4832 212 TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKL 291 (770)
Q Consensus 212 ~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l 291 (770)
..+ ...-+...++.+. ..|+..++..-.++|+.++.. .--++.++.... ..
T Consensus 386 vTF---teHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlk-----RYrNfRTft~P~------------------p~-- 436 (893)
T KOG0291|consen 386 VTF---TEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLK-----RYRNFRTFTSPE------------------PI-- 436 (893)
T ss_pred EEe---ccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeec-----ccceeeeecCCC------------------ce--
Confidence 344 2234556788998 589999998888888877532 112333332210 01
Q ss_pred cCcceEEEccCCcEEEEeCCC---eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEE
Q psy4832 292 SHPKGLAIKADKTMFIADGTN---IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLH 367 (770)
Q Consensus 292 ~~P~gIavd~~G~lYvaD~~~---Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ly 367 (770)
.-..+|+|+.|.|.+|-..+ |.+.+ ..|++.-++..+.. --.+|+++| .+++.
T Consensus 437 -QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg---------------------PVs~l~f~~-~~~~L 493 (893)
T KOG0291|consen 437 -QFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG---------------------PVSGLSFSP-DGSLL 493 (893)
T ss_pred -eeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCC---------------------cceeeEEcc-ccCeE
Confidence 12478999999998886554 77776 45776655433221 124789999 78777
Q ss_pred EEe--CCEEEEEc---CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCC-E
Q psy4832 368 FID--DRVIFKLT---NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD-L 441 (770)
Q Consensus 368 v~D--~~~I~~i~---~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~-l 441 (770)
++- ...|++.+ ..|++.++.-. ....+++|.|+|. |
T Consensus 494 aS~SWDkTVRiW~if~s~~~vEtl~i~--------------------------------------sdvl~vsfrPdG~el 535 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSSGTVETLEIR--------------------------------------SDVLAVSFRPDGKEL 535 (893)
T ss_pred EeccccceEEEEEeeccCceeeeEeec--------------------------------------cceeEEEEcCCCCeE
Confidence 765 34454443 45666665411 2357788889886 7
Q ss_pred EEEeCCCCceeeEEEEcC--CCcEEEeecCccC--CCCCcCCCCCcccccCccCccccc-ceecCCeeEEEEcCCCcEEE
Q psy4832 442 YIADIDARKVNALRVIDS--TGRMFDFAGRWQS--DKKNCNTTNCAEFEKNSKETLLTS-TARFTSISALSVSPDGVVNV 516 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~--~G~i~~~aG~~~~--~~~~~~~~~~~~~~~~~~d~~~~~-~~~l~~P~giav~~dG~lyv 516 (770)
-||-.++. |...|. ...+.+|-|.... +.. ..|-..+. .++-..-+.|+.++||...+
T Consensus 536 aVaTldgq----Itf~d~~~~~q~~~IdgrkD~~~gR~-------------~~D~~ta~~sa~~K~Ftti~ySaDG~~Il 598 (893)
T KOG0291|consen 536 AVATLDGQ----ITFFDIKEAVQVGSIDGRKDLSGGRK-------------ETDRITAENSAKGKTFTTICYSADGKCIL 598 (893)
T ss_pred EEEEecce----EEEEEhhhceeeccccchhhcccccc-------------ccceeehhhcccCCceEEEEEcCCCCEEE
Confidence 77766643 344443 3333344443211 110 12222222 23334457799999999988
Q ss_pred EcCCCceEE
Q psy4832 517 ADQGSLHIL 525 (770)
Q Consensus 517 aD~~~~~I~ 525 (770)
|-..++-|-
T Consensus 599 AgG~sn~iC 607 (893)
T KOG0291|consen 599 AGGESNSIC 607 (893)
T ss_pred ecCCcccEE
Confidence 876555443
No 54
>KOG4499|consensus
Probab=97.79 E-value=0.00032 Score=68.72 Aligned_cols=120 Identities=15% Similarity=0.248 Sum_probs=71.2
Q ss_pred ccCcceEEEeCCCCeEEEEe--CCEEEEEc---CCCcEE---EEecC-CCCCCCCCCCCccccccccccccccccCCccc
Q psy4832 351 LQWPTGLALSPLDDSLHFID--DRVIFKLT---NDLKVK---IVAGI-PLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVR 421 (770)
Q Consensus 351 l~~P~gla~d~~~g~lyv~D--~~~I~~i~---~~G~v~---~vaG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (770)
+.-|+||++|.....+|+.| +..|..++ +.|.+. .+.-. ..+.
T Consensus 157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~---------------------------- 208 (310)
T KOG4499|consen 157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQP---------------------------- 208 (310)
T ss_pred ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCC----------------------------
Confidence 45688999997556799999 57784444 445432 11110 0000
Q ss_pred ccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcc-ccccee
Q psy4832 422 ASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETL-LTSTAR 499 (770)
Q Consensus 422 a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 499 (770)
..-..|.|+++|.+|+||||-+...+ |.++|+ +|++..-.--+.... .|-||.+-+-|-. ....+.
T Consensus 209 ---~e~~~PDGm~ID~eG~L~Va~~ng~~---V~~~dp~tGK~L~eiklPt~qi------tsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 209 ---FESLEPDGMTIDTEGNLYVATFNGGT---VQKVDPTTGKILLEIKLPTPQI------TSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred ---cCCCCCCcceEccCCcEEEEEecCcE---EEEECCCCCcEEEEEEcCCCce------EEEEecCCCccEEEEEehhc
Confidence 01134899999999999999999885 678886 787654332222221 2456654332322 234455
Q ss_pred cCCeeEEEEcC
Q psy4832 500 FTSISALSVSP 510 (770)
Q Consensus 500 l~~P~giav~~ 510 (770)
+..|.+.--+|
T Consensus 277 ~~dp~~~~~~p 287 (310)
T KOG4499|consen 277 FDDPVRTNTDP 287 (310)
T ss_pred ccCchhcccCC
Confidence 66666666666
No 55
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=97.74 E-value=7.8e-05 Score=53.99 Aligned_cols=41 Identities=24% Similarity=0.383 Sum_probs=32.5
Q ss_pred EeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEE
Q psy4832 654 YDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISL 698 (770)
Q Consensus 654 YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~ 698 (770)
||+.|||++.+++.|++++|.|+..+ +++.+++| +|..++|
T Consensus 1 yd~~g~l~~~~~p~G~~~~~~YD~~G---rl~~~tdp-~g~~~~~ 41 (42)
T TIGR01643 1 YDAAGRLTGSTDADGTTTRYTYDAAG---RLVEITDA-DGGSTRY 41 (42)
T ss_pred CCCCCCEEEEECCCCCEEEEEECCCC---CEEEEECC-CCCEEEe
Confidence 78899999999999988888886654 56777788 7776665
No 56
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=97.73 E-value=6e-05 Score=53.17 Aligned_cols=37 Identities=30% Similarity=0.539 Sum_probs=27.6
Q ss_pred EeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCe
Q psy4832 654 YDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGK 694 (770)
Q Consensus 654 YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~ 694 (770)
||+.|||++++|+.|.+++|.|+..+ +++++++| .|.
T Consensus 1 YD~~G~l~~~~d~~G~~~~y~YD~~g---~l~~~t~~-~G~ 37 (38)
T PF05593_consen 1 YDANGRLTSVTDPDGRTTRYTYDAAG---RLTSVTDP-DGR 37 (38)
T ss_pred CCCCCCEEEEEcCCCCEEEEEECCCC---CEEEEECC-CCc
Confidence 89999999999988877777776655 45666666 543
No 57
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.59 E-value=0.046 Score=56.88 Aligned_cols=191 Identities=18% Similarity=0.250 Sum_probs=98.5
Q ss_pred EEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc---CCCCcEEEEECCCcccc-CCCCC
Q psy4832 203 RLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA---DPSINWEVAVGSGERCI-PGDET 278 (770)
Q Consensus 203 ~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~---~~~g~~~~vaG~g~~~~-p~~~~ 278 (770)
..+++|.+.... ..|..|.||+++ .+.||++.. .+|+++....++. .+.+.. ..|- |-..-
T Consensus 34 g~~~~g~l~~~~----r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~-------D~~yvPr~~~ 98 (335)
T TIGR03032 34 GLQPNGELDVFE----RTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGY-------DRLYVPRASY 98 (335)
T ss_pred EeCCCCcEEEEe----eccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCC-------CeEEeeeeee
Confidence 336778755443 368889999998 589999976 6899984322210 001111 0000 00001
Q ss_pred CcCCCcccccccccCcceEEEccCCcEEEEeCC-C-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcce
Q psy4832 279 NCGDNGPALAAKLSHPKGLAIKADKTMFIADGT-N-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTG 356 (770)
Q Consensus 279 ~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~-~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~g 356 (770)
..|| -.-+.|++ .++.++|..+. + +-.+++...+... |+|..-..-.+...- .-+|
T Consensus 99 ~TGd---------idiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~---------WkPpFIs~la~eDRC---HLNG 156 (335)
T TIGR03032 99 VTGD---------IDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPL---------WKPPFISKLAPEDRC---HLNG 156 (335)
T ss_pred eccC---------cchhheee-cCCcEEEEECcceeEEEECCCCccccc---------cCCccccccCccCce---eecc
Confidence 1111 13567888 46666666543 2 6666665544332 444321111111112 3468
Q ss_pred EEEeCCCCe-EEEEe---C--CEEEEEc-CCC-cEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 357 LALSPLDDS-LHFID---D--RVIFKLT-NDL-KVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 357 la~d~~~g~-lyv~D---~--~~I~~i~-~~G-~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
||+. +|. -||+- + ..=+|=. .+| .+.-+... ......|.
T Consensus 157 lA~~--~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~-------------------------------evl~~GLs 203 (335)
T TIGR03032 157 MALD--DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSG-------------------------------EVVASGLS 203 (335)
T ss_pred eeee--CCeEEEEEEeeccCCcccccccccCCeEEEEeCCC-------------------------------CEEEcCcc
Confidence 9998 565 67774 1 0111111 111 11111100 00112345
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEee
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFA 467 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~a 467 (770)
.|++--. .+|.||++|++.++ +..+|++ |+...++
T Consensus 204 mPhSPRW-hdgrLwvldsgtGe---v~~vD~~~G~~e~Va 239 (335)
T TIGR03032 204 MPHSPRW-YQGKLWLLNSGRGE---LGYVDPQAGKFQPVA 239 (335)
T ss_pred CCcCCcE-eCCeEEEEECCCCE---EEEEcCCCCcEEEEE
Confidence 5665544 47999999999986 6778885 9887775
No 58
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.58 E-value=0.0041 Score=70.96 Aligned_cols=98 Identities=26% Similarity=0.475 Sum_probs=64.0
Q ss_pred ccccCcceEEEeCCCCeEEEEe--C-------------------CEEEEEcCCCc--------EE--EEecCCCCCCCCC
Q psy4832 349 AQLQWPTGLALSPLDDSLHFID--D-------------------RVIFKLTNDLK--------VK--IVAGIPLHCRTGD 397 (770)
Q Consensus 349 ~~l~~P~gla~d~~~g~lyv~D--~-------------------~~I~~i~~~G~--------v~--~vaG~~~~~~~~~ 397 (770)
..|..|.+|+++|.++.|||+- + +.|+++.+++. .. .+.|.+.....
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~-- 424 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASG-- 424 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccc--
Confidence 4689999999999889999985 1 26888886543 22 22333221100
Q ss_pred CCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEee
Q psy4832 398 KDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFA 467 (770)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~a 467 (770)
..........|..|.+|+|+++|+|||++-.+..-+.+.-..++|.+..++
T Consensus 425 -------------------~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~ 475 (524)
T PF05787_consen 425 -------------------NGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFA 475 (524)
T ss_pred -------------------cccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeee
Confidence 001112345689999999999999999987765433344556677766654
No 59
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.56 E-value=0.025 Score=57.96 Aligned_cols=202 Identities=17% Similarity=0.188 Sum_probs=114.9
Q ss_pred ceEEEEcCCCCEEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
-.|+.+..+|.||.+.. .+|++++++ |++.....++.. ..-.||++. ++.||.-.+.++..++++.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~--~FgEGit~~--~d~l~qLTWk~~~~f~yd~----- 117 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR--YFGEGITIL--GDKLYQLTWKEGTGFVYDP----- 117 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT----EEEEEEE--TTEEEEEESSSSEEEEEET-----
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc--ccceeEEEE--CCEEEEEEecCCeEEEEcc-----
Confidence 37888878999999886 389999965 787765554332 345799997 7899999999999999954
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCC-cEEEeecCCCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEG-IIHTLIGHHKHHNI 334 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G-~i~t~~g~~~~~~~ 334 (770)
+. ++.+ ++-. +.| ...||+.| ...||++|+.+ |+.+||.- .+..-+....
T Consensus 118 --~t-l~~~-~~~~--------y~~-----------EGWGLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~---- 169 (264)
T PF05096_consen 118 --NT-LKKI-GTFP--------YPG-----------EGWGLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQVTD---- 169 (264)
T ss_dssp --TT-TEEE-EEEE---------SS-----------S--EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE----
T ss_pred --cc-ceEE-EEEe--------cCC-----------cceEEEcC-CCEEEEECCccceEEECCcccceEEEEEEEE----
Confidence 21 1111 1000 111 34699976 45799999987 99999863 2222111110
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcC-CCcEEEEecC-CCCCCCCCCCCcccccccccc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTN-DLKVKIVAGI-PLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~-~G~v~~vaG~-~~~~~~~~~~~~~~~~~~~~~ 410 (770)
++ ..+.+-+.|-+- +|.||.-- +++|.+|+| +|.|....-. +......
T Consensus 170 -------~g-----~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~-------------- 221 (264)
T PF05096_consen 170 -------NG-----RPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVG-------------- 221 (264)
T ss_dssp -------TT-----EE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHT--------------
T ss_pred -------CC-----EECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccc--------------
Confidence 00 113334456665 78888665 789999996 5887765521 0000000
Q ss_pred ccccccCCcccccccccCCeeEEEEcCC-CCEEEEeCCCCceeeEEE
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPT-GDLYIADIDARKVNALRV 456 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~-G~lyVaD~~~~ri~~i~~ 456 (770)
........-.-.+|||.|+. +.|||+--.=-++.+|+.
T Consensus 222 --------~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 222 --------RDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp --------STTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred --------ccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 00000111244799999985 558888754444544543
No 60
>KOG4499|consensus
Probab=97.51 E-value=0.0021 Score=63.10 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=78.2
Q ss_pred EEEcCCCCEEEEeC-----------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEE--EEEec
Q psy4832 185 LTSGPDGSLYVGDF-----------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQI--LRVLS 251 (770)
Q Consensus 185 la~~~dG~lyv~d~-----------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I--~~i~~ 251 (770)
--+||+|..|.+-. ..+++..+.+++..++. .+.-+++|++|.....+|+.|+.+..| +.++-
T Consensus 114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~----~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWN----CVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeeh----hccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 35789999887532 26778888888887764 566789999997778999999999999 44432
Q ss_pred cCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-CcEEE
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GIIHT 324 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~i~t 324 (770)
.++ +.+. ...+...... .| ..--.|.|+++|.+|+||||-... |.++|+. |++..
T Consensus 190 ~tG--~~sn-r~~i~dlrk~-~~--------------~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ 247 (310)
T KOG4499|consen 190 PTG--DLSN-RKVIFDLRKS-QP--------------FESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL 247 (310)
T ss_pred Ccc--cccC-cceeEEeccC-CC--------------cCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE
Confidence 211 1111 1112111000 00 011259999999999999998654 9999964 76654
No 61
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.40 E-value=0.32 Score=53.42 Aligned_cols=66 Identities=21% Similarity=0.392 Sum_probs=41.1
Q ss_pred cceEEEccCCc-EEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEEE
Q psy4832 294 PKGLAIKADKT-MFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFI 369 (770)
Q Consensus 294 P~gIavd~~G~-lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~ 369 (770)
+.++++.+||. +|++.... |.++|.. +++..-+..+ ..|.++++++ +|+ ||++
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----------------------~~~~~i~~s~-DG~~~~v~ 95 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----------------------GNPRGIAVSP-DGKYVYVA 95 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----------------------SEEEEEEE---TTTEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----------------------CCcceEEEcC-CCCEEEEE
Confidence 34677888886 99997655 8999853 5443333222 1488999999 765 7777
Q ss_pred e--CCEEEEEcC-CCc
Q psy4832 370 D--DRVIFKLTN-DLK 382 (770)
Q Consensus 370 D--~~~I~~i~~-~G~ 382 (770)
. .+.|..+|. +.+
T Consensus 96 n~~~~~v~v~D~~tle 111 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLE 111 (369)
T ss_dssp EEETTEEEEEETTT--
T ss_pred ecCCCceeEecccccc
Confidence 6 689999984 444
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.22 E-value=0.31 Score=49.68 Aligned_cols=221 Identities=21% Similarity=0.227 Sum_probs=118.9
Q ss_pred eEEEEcCCCC-EEEEeC-ceEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGPDGS-LYVGDF-NLVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~dG~-lyv~d~-~~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
..+.+.++++ |+++.. +.|+.++.+. +....+. ........+++++ ++.++++...++.|..++.. +
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~------~ 124 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT---GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVE------T 124 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe---ccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECC------C
Confidence 4778888874 444443 4677776553 3333331 1223567888987 57777777666777777421 1
Q ss_pred CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-C-CeEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 260 INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-T-NIRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 260 g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~-~Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
+....... ..-..+..+++++++.++++.. . .|+.++.. +........
T Consensus 125 ~~~~~~~~---------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-------- 175 (289)
T cd00200 125 GKCLTTLR---------------------GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-------- 175 (289)
T ss_pred cEEEEEec---------------------cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec--------
Confidence 22211110 0011356888888776555543 3 37777654 322221111
Q ss_pred CCccCCCcccccccccCcceEEEeCCCC-eEEEEe-CCEEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccc
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID-DRVIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKS 413 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D-~~~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (770)
.-.....+++++ ++ .|+++. ++.|..++.. ++.....-
T Consensus 176 -------------~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~------------------------- 216 (289)
T cd00200 176 -------------HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLR------------------------- 216 (289)
T ss_pred -------------CccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchh-------------------------
Confidence 011456788888 66 566665 4666666643 22111110
Q ss_pred cccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcE-EEeecCccCCCCCcCCCCCcccccCccC
Q psy4832 414 TVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDST-GRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKE 491 (770)
Q Consensus 414 ~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d 491 (770)
..-..+..+++++++.++++....+. |+.++.. +.. ..+.+.
T Consensus 217 -----------~~~~~i~~~~~~~~~~~~~~~~~~~~---i~i~~~~~~~~~~~~~~~---------------------- 260 (289)
T cd00200 217 -----------GHENGVNSVAFSPDGYLLASGSEDGT---IRVWDLRTGECVQTLSGH---------------------- 260 (289)
T ss_pred -----------hcCCceEEEEEcCCCcEEEEEcCCCc---EEEEEcCCceeEEEcccc----------------------
Confidence 00124688999998888888764444 4444432 322 222100
Q ss_pred cccccceecCCeeEEEEcCCCcEEEEcCCCceEE
Q psy4832 492 TLLTSTARFTSISALSVSPDGVVNVADQGSLHIL 525 (770)
Q Consensus 492 ~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~ 525 (770)
-..+.+++++++|.++++-..++.|+
T Consensus 261 --------~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 261 --------TNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred --------CCcEEEEEECCCCCEEEEecCCCeEE
Confidence 12367899999887776655555543
No 63
>KOG1215|consensus
Probab=97.21 E-value=0.0086 Score=73.82 Aligned_cols=190 Identities=21% Similarity=0.242 Sum_probs=131.9
Q ss_pred cCceEEEEcC-CCCEEEEeC--ceEEEEcCCCcEEEE-eccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 180 LTPVALTSGP-DGSLYVGDF--NLVRRLTPEGNVFTV-LQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 180 ~~P~~la~~~-dG~lyv~d~--~~I~~i~~~G~v~~~-~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
..+..+.++. ++.+|.+|. ..|-+...++....- . ..+...|.++++|-..+++|++|.....|....
T Consensus 437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~---~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~----- 508 (877)
T KOG1215|consen 437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELC---GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVAD----- 508 (877)
T ss_pred ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEe---ccCccccCcEEEEeccCCceecccCCceeEEEE-----
Confidence 4556666665 567999987 478887777655433 3 456778999999999999999999998888773
Q ss_pred cCCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC---eEEECCCCcEEEeecCCC
Q psy4832 256 ADPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN---IRVVSPEGIIHTLIGHHK 330 (770)
Q Consensus 256 ~~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~---Ir~id~~G~i~t~~g~~~ 330 (770)
.+|.. .+++.. .+..|+.+++++ .|.+|++|... |.+-..+|.-.+....
T Consensus 509 --~~g~~~~vl~~~---------------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~-- 563 (877)
T KOG1215|consen 509 --LDGSSRKVLVSK---------------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVT-- 563 (877)
T ss_pred --ccCCceeEEEec---------------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEe--
Confidence 23332 223321 135799999999 78899999874 6666666633222211
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--C-EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--R-VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQ 407 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~-~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~ 407 (770)
..+.||+||++|-.++.+|++|. . .|.+++.+|..+.+.
T Consensus 564 ------------------~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~-------------------- 605 (877)
T KOG1215|consen 564 ------------------NGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVV-------------------- 605 (877)
T ss_pred ------------------CCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEe--------------------
Confidence 12679999999988889999993 4 688888888755422
Q ss_pred cccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEE
Q psy4832 408 SKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRV 456 (770)
Q Consensus 408 ~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~ 456 (770)
....+..|.++++- .+.+|+.|+..+.+.+..+
T Consensus 606 ---------------~~~~~~~p~~~~~~-~~~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 606 ---------------DSEDLPHPFGLSVF-EDYIYWTDWSNRAISRAEK 638 (877)
T ss_pred ---------------ccccCCCceEEEEe-cceeEEeeccccceEeeec
Confidence 11234568889884 5689999998875443333
No 64
>KOG1215|consensus
Probab=97.18 E-value=0.02 Score=70.56 Aligned_cols=221 Identities=20% Similarity=0.236 Sum_probs=146.0
Q ss_pred CCCEEEEeCceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEE-EEEC
Q psy4832 190 DGSLYVGDFNLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWE-VAVG 267 (770)
Q Consensus 190 dG~lyv~d~~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~-~vaG 267 (770)
.-.++++..+.|+++..+.. +...+ .+......+.++..++.+|.+|....+|.+... ++... .+.+
T Consensus 408 ~~~l~~s~~~~ir~~~~~~~~~~~p~----~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~-------~~~~~~~~~~ 476 (877)
T KOG1215|consen 408 EAFLLFSNRHDIRRISLDCSDVSRPL----EGIKNAVALDFDVLNNRIYWADLSDEKICRASQ-------DGSSECELCG 476 (877)
T ss_pred CcEEEEecCccceecccCCCcceEEc----cCCccceEEEEEecCCEEEEEeccCCeEeeecc-------CCCccceEec
Confidence 33456666678888876654 33332 223566777888778899999999999988742 22211 1122
Q ss_pred CCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEEeCCC--eEEECCCCcE-EEeecCCCCCCCcCCCccCCC
Q psy4832 268 SGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVSPEGII-HTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 268 ~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id~~G~i-~t~~g~~~~~~~~~p~~~~~~ 343 (770)
. ....|.+|++|. .+++|++|... |.+.+.+|.. ..++..
T Consensus 477 ~---------------------g~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~--------------- 520 (877)
T KOG1215|consen 477 D---------------------GLCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK--------------- 520 (877)
T ss_pred c---------------------CccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec---------------
Confidence 1 144689999997 67799999887 6666666643 233322
Q ss_pred cccccccccCcceEEEeCCCCeEEEEeCC---EEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcc
Q psy4832 344 FPASTAQLQWPTGLALSPLDDSLHFIDDR---VIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSV 420 (770)
Q Consensus 344 ~~~~~~~l~~P~gla~d~~~g~lyv~D~~---~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (770)
.+..|..++++|..+.+|++|.+ +|.|-..+|.-.....
T Consensus 521 ------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~-------------------------------- 562 (877)
T KOG1215|consen 521 ------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLV-------------------------------- 562 (877)
T ss_pred ------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEE--------------------------------
Confidence 24579999999999999999943 5666666664222221
Q ss_pred cccccccCCeeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCccccccee
Q psy4832 421 RASNMDLGSLTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTAR 499 (770)
Q Consensus 421 ~a~~~~l~~P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 499 (770)
...+..|+|+++|. +..+|++|..... .|.+++-+|....+. ....
T Consensus 563 ---~~~~~~p~glt~d~~~~~~yw~d~~~~~--~i~~~~~~g~~r~~~----------------------------~~~~ 609 (877)
T KOG1215|consen 563 ---TNGILWPNGLTIDYETDRLYWADAKLDY--TIESANMDGQNRRVV----------------------------DSED 609 (877)
T ss_pred ---eCCccCCCcceEEeecceeEEEcccCCc--ceeeeecCCCceEEe----------------------------cccc
Confidence 01145699999996 6779999998763 367777677654311 1123
Q ss_pred cCCeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 500 FTSISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
+..|.++++-.+ .+|..|..+..+.+...
T Consensus 610 ~~~p~~~~~~~~-~iyw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 610 LPHPFGLSVFED-YIYWTDWSNRAISRAEK 638 (877)
T ss_pred CCCceEEEEecc-eeEEeeccccceEeeec
Confidence 567999999755 89999988765554433
No 65
>COG3209 RhsA Rhs family protein [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.0067 Score=73.97 Aligned_cols=145 Identities=19% Similarity=0.303 Sum_probs=95.2
Q ss_pred ecCCCCCCceEEEECCCCCEEEEEEcCC-CcceEeccCCccccCCCCcceeecceeeeee-cCceEEEEEecCCceEEEE
Q psy4832 576 YSKNTSFGKLSTITDASGNKINFLRDYS-NVAQLQWPTGLALSPLDDSLHFIDDRVIFKL-TNDLKIRALKKGRFDVTYD 653 (770)
Q Consensus 576 Yd~~~~~G~L~~vtd~~G~~~~~~~d~~-~~~~~~~p~G~~~~~~d~~~~~~~~~~~~~~-~~g~l~~~~~~~g~~~~y~ 653 (770)
|+.. +.+..++|+.|+.+++.|+.. .+..+.+|.|. ...+.+ ..|.+++++++.+. ..|.
T Consensus 40 y~~~---~~~~~~~~~~g~~t~~~y~~~~~~~~i~d~~g~--------------~~~~~yd~~g~~~~~t~~~~~-~~~~ 101 (796)
T COG3209 40 YDYL---GQTIALTDTQGATTRYEYDLAGNLTQITDPDGS--------------RTTTTYDADGNTTSVTDAPGT-PTYT 101 (796)
T ss_pred eccc---CCeEEEEcCCCCeEEEEeccCCccceecCCCCc--------------eeeeeecCCCceeeeecCCCC-cceE
Confidence 6665 778888888888888888866 44457778887 344443 47778888888888 7788
Q ss_pred EeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEecCcEEEEEeCCCCCeEEEEcCC
Q psy4832 654 YDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQY 733 (770)
Q Consensus 654 YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~~~d~~ 733 (770)
||..++++...++.|..+.+.|+... ++...... ++.+..+.||..| +......+. ...++..+.++.+.+..
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~~---~l~~~~~~-~g~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~d~ 174 (796)
T COG3209 102 YDAGGRVISQTTGRGSVTTFTYDGLD---RLPEVRGL-GGRVQFYLYDAGG-FTYDASGGL--TYATNSRGKTTTLRDDA 174 (796)
T ss_pred EcCCCceeeccCCCcceEEEccCCcc---ceeEEecc-CCeEEEEeecccc-cceecccCc--cccccccccceeeeccc
Confidence 88888888888888877777776554 33344444 7788888888887 222222222 44456666666555544
Q ss_pred CCEEEEEEeCCCCce
Q psy4832 734 GETVREIMRSPYGHI 748 (770)
Q Consensus 734 G~~v~~~~yd~~G~~ 748 (770)
+. ++.|+..+..
T Consensus 175 ~~---r~~~~~~~~~ 186 (796)
T COG3209 175 TR---RVTYDKGGRL 186 (796)
T ss_pred hh---heehhhcCcc
Confidence 43 2444444443
No 66
>KOG0318|consensus
Probab=97.11 E-value=0.64 Score=51.14 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=72.4
Q ss_pred CCeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEE
Q psy4832 428 GSLTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALS 507 (770)
Q Consensus 428 ~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gia 507 (770)
++..+|+.+..+.||..-+++. +++++..+.- +.... . ...=..|-++|
T Consensus 364 nqI~~~~~~~~~~~~t~g~Dd~----l~~~~~~~~~--~t~~~----------------------~---~~lg~QP~~la 412 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWDDT----LRVISLKDNG--YTKSE----------------------V---VKLGSQPKGLA 412 (603)
T ss_pred ceEEEEeecCCCcEEEEecCCe----EEEEecccCc--ccccc----------------------e---eecCCCceeEE
Confidence 4578999988899999998874 6666532210 00000 0 00013588999
Q ss_pred EcCCCcE-EEEcCCCceEEe-eecCC---c-------ccCCCCcEEEeCCCCCcEEEEecCCceEEEE--cCCCCCcEEE
Q psy4832 508 VSPDGVV-NVADQGSLHILA-LQHYL---P-------THDEHGEFKIPYPATNEIYVFNRYGQHITTR--DMTSGKPRYS 573 (770)
Q Consensus 508 v~~dG~l-yvaD~~~~~I~~-i~~~~---~-------~~~~~g~~~i~~~~~~e~yvfd~~G~~~~t~--d~~tg~~~y~ 573 (770)
+.++|.+ .++-.....+.+ ..... . .....+.+....-..+.+++|.-.|.-+... -....+....
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 9988743 444333323322 10000 0 1112233333333444577776555332111 1111222333
Q ss_pred EEecCCCCCCceEEEECCCCCEEEEEEcC
Q psy4832 574 FLYSKNTSFGKLSTITDASGNKINFLRDY 602 (770)
Q Consensus 574 ~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~ 602 (770)
..|..+ |......|+.+..+-|....
T Consensus 493 vaySpd---~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 493 VAYSPD---GAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred EEECCC---CcEEEEeccCCcEEEEEccc
Confidence 457766 88888999888877765543
No 67
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.04 E-value=0.01 Score=67.85 Aligned_cols=87 Identities=22% Similarity=0.391 Sum_probs=55.7
Q ss_pred CcccccceeEEEEeCCCCcEEEEeCCCc-------------------EEEEEeccCCccCCC---CcEEEEECCCccccC
Q psy4832 217 SATQVSYQYYLALSPADGHLYISDAEKH-------------------QILRVLSLESVADPS---INWEVAVGSGERCIP 274 (770)
Q Consensus 217 ~~~~~~~p~~lav~p~~g~lyvsd~~~~-------------------~I~~i~~~~~~~~~~---g~~~~vaG~g~~~~p 274 (770)
+++.+..|.+|+++|.++.|||+.+++. +|+++..... +.. ..+++++-.|..-
T Consensus 345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~--d~~~~~f~~~~~~~~g~~~-- 420 (524)
T PF05787_consen 345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGN--DHAATTFTWELFLVGGDPT-- 420 (524)
T ss_pred ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCC--ccccceeEEEEEEEecCcc--
Confidence 3678999999999999999999987765 7888853221 111 1233333222110
Q ss_pred CCCCCcCCCcccccccccCcceEEEccCCcEEEEe
Q psy4832 275 GDETNCGDNGPALAAKLSHPKGLAIKADKTMFIAD 309 (770)
Q Consensus 275 ~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD 309 (770)
. .............|..|..|+|+++|+|||+.
T Consensus 421 -~-~~~~~~~~~~~~~f~sPDNL~~d~~G~LwI~e 453 (524)
T PF05787_consen 421 -D-ASGNGSNKCDDNGFASPDNLAFDPDGNLWIQE 453 (524)
T ss_pred -c-ccccccCcccCCCcCCCCceEECCCCCEEEEe
Confidence 0 00011223335669999999999999999985
No 68
>KOG0291|consensus
Probab=96.81 E-value=0.91 Score=52.14 Aligned_cols=160 Identities=20% Similarity=0.221 Sum_probs=101.7
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
+..-..++.+| +|.+.++-...++|..++. .+|...+.+. ++ -+.-.++.+.
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~------~SgfC~vTFt--eH-------------------ts~Vt~v~f~ 401 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNT------QSGFCFVTFT--EH-------------------TSGVTAVQFT 401 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEec------cCceEEEEec--cC-------------------CCceEEEEEE
Confidence 34456788887 8899988888888877752 2232222111 00 0123478888
Q ss_pred cCCcEEEEeCC--CeEEECCCC--cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe---CCE
Q psy4832 301 ADKTMFIADGT--NIRVVSPEG--IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID---DRV 373 (770)
Q Consensus 301 ~~G~lYvaD~~--~Ir~id~~G--~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D---~~~ 373 (770)
..|+..++.+- .+|..|... .+.|+.... ..+ -..||+|| .|.|.++- .-.
T Consensus 402 ~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~------------------p~Q---fscvavD~-sGelV~AG~~d~F~ 459 (893)
T KOG0291|consen 402 ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE------------------PIQ---FSCVAVDP-SGELVCAGAQDSFE 459 (893)
T ss_pred ecCCEEEEeecCCeEEeeeecccceeeeecCCC------------------cee---eeEEEEcC-CCCEEEeeccceEE
Confidence 88887776542 277776542 444443221 112 24799999 88888775 356
Q ss_pred EEEEc-CCCcEEE-EecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 374 IFKLT-NDLKVKI-VAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 374 I~~i~-~~G~v~~-vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
|+..+ +.|++.- +.|.- +| ..+|+|+|.|.+.++-+..+.|
T Consensus 460 IfvWS~qTGqllDiLsGHE---------gP----------------------------Vs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 460 IFVWSVQTGQLLDILSGHE---------GP----------------------------VSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred EEEEEeecCeeeehhcCCC---------Cc----------------------------ceeeEEccccCeEEeccccceE
Confidence 77777 6677553 33321 11 3789999999988887777777
Q ss_pred eeEEEEcCCCcEEEee
Q psy4832 452 NALRVIDSTGRMFDFA 467 (770)
Q Consensus 452 ~~i~~i~~~G~i~~~a 467 (770)
+....++..|++.++.
T Consensus 503 RiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLE 518 (893)
T ss_pred EEEEeeccCceeeeEe
Confidence 6666778888887775
No 69
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.41 E-value=0.45 Score=54.61 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=57.6
Q ss_pred ceee-eeecCCCeEEECCCccEEecccCCCeEEEEeccCc----cCCccCCCCC-cc-----------cccccccCceEE
Q psy4832 123 DVHH-HYNFHEGILQKGDGSSLHLKHEFPRTVSVVMGTGL----QRPLVCKDCD-GV-----------ARDARLLTPVAL 185 (770)
Q Consensus 123 ~~~~-~~~~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~----~~~~~~~~~~-g~-----------~~~~~l~~P~~l 185 (770)
|.|| ++...+|. -||..+|+.+..+.+|.+|.-+-- ...++-.... |. -..+++. +
T Consensus 126 D~HHp~~s~t~g~---ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----~ 198 (635)
T PRK02888 126 DTHHPHMSFTDGT---YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFR----I 198 (635)
T ss_pred CcCCCcccccCCc---cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccc----c
Confidence 4455 68887876 588899999866777766642200 0001000000 00 0011222 2
Q ss_pred EEcCCCC-EEEEeC--ceEEEEcCCC-cEEEEeccCcccccceeEEEEeCCCCcEEEEeC
Q psy4832 186 TSGPDGS-LYVGDF--NLVRRLTPEG-NVFTVLQLSATQVSYQYYLALSPADGHLYISDA 241 (770)
Q Consensus 186 a~~~dG~-lyv~d~--~~I~~i~~~G-~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~ 241 (770)
-+.+||. ++..+. +.+..||.+- ++...+..+ ..|..++++|.++.+|++..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd----gnpd~v~~spdGk~afvTsy 254 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD----GNLDNVDTDYDGKYAFSTCY 254 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC----CCcccceECCCCCEEEEecc
Confidence 2356785 444332 5788887663 232222111 26889999997778888864
No 70
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.36 E-value=0.25 Score=51.63 Aligned_cols=173 Identities=18% Similarity=0.148 Sum_probs=98.1
Q ss_pred cccccCceEEEEcCCCCEEEEeCceEEEEcCCCcEEEEecc--C-----------cccccceeEEEEeCCCCcEEEEeCC
Q psy4832 176 DARLLTPVALTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQL--S-----------ATQVSYQYYLALSPADGHLYISDAE 242 (770)
Q Consensus 176 ~~~l~~P~~la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~--~-----------~~~~~~p~~lav~p~~g~lyvsd~~ 242 (770)
...|..|.||++.+ ..||++....|.++-..-++...... . .++--.-..|++ .++.+|+.++.
T Consensus 45 ~r~F~r~MGl~~~~-~~l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~fVNT~ 121 (335)
T TIGR03032 45 ERTFPRPMGLAVSP-QSLTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL--GAGRLLFVNTL 121 (335)
T ss_pred eeccCccceeeeeC-CeEEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee--cCCcEEEEECc
Confidence 56788999999964 68999998888888221111110000 0 011122346777 37788888888
Q ss_pred CcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCC-----C-eEE
Q psy4832 243 KHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGT-----N-IRV 315 (770)
Q Consensus 243 ~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~-----~-Ir~ 315 (770)
-.++..++ +..+.... .-+|+....... .-.+-+|+|+. +|. -||+--. . -|.
T Consensus 122 fSCLatl~-------~~~SF~P~-----WkPpFIs~la~e-------DRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~ 181 (335)
T TIGR03032 122 FSCLATVS-------PDYSFVPL-----WKPPFISKLAPE-------DRCHLNGMALD-DGEPRYVTALSQSDVADGWRE 181 (335)
T ss_pred ceeEEEEC-------CCCccccc-----cCCccccccCcc-------Cceeecceeee-CCeEEEEEEeeccCCcccccc
Confidence 78888773 33322111 101111000000 01256799997 565 7776321 2 333
Q ss_pred ECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEec
Q psy4832 316 VSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAG 388 (770)
Q Consensus 316 id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG 388 (770)
-..+|-+..-+.++. .....|..|.+--+. +|+|||+| .+.|.+++++ |+...++-
T Consensus 182 ~~~~gG~vidv~s~e---------------vl~~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~ 240 (335)
T TIGR03032 182 GRRDGGCVIDIPSGE---------------VVASGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAF 240 (335)
T ss_pred cccCCeEEEEeCCCC---------------EEEcCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEE
Confidence 333443322222211 112346778888888 89999999 5899999986 99888874
No 71
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.15 E-value=1.3 Score=47.73 Aligned_cols=71 Identities=24% Similarity=0.271 Sum_probs=43.3
Q ss_pred CcceEEEccCCcEEEEeC-C------C-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC
Q psy4832 293 HPKGLAIKADKTMFIADG-T------N-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD 364 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~-~------~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g 364 (770)
.|.||++.++|.+||++- . . |++++.+|.+..-+..+.. +.|.......... =....+||++| +|
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~---~~~~~~~~~~~~~---N~G~E~la~~~-dG 158 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAA---FLPDANGTSGRRN---NRGFEGLAVSP-DG 158 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccc---cccccCccccccC---CCCeEEEEECC-CC
Confidence 789999988999999973 3 3 9999999977443321110 1110000000011 12367999999 87
Q ss_pred e-EEEEe
Q psy4832 365 S-LHFID 370 (770)
Q Consensus 365 ~-lyv~D 370 (770)
. ||++-
T Consensus 159 ~~l~~~~ 165 (326)
T PF13449_consen 159 RTLFAAM 165 (326)
T ss_pred CEEEEEE
Confidence 7 88874
No 72
>KOG0772|consensus
Probab=96.07 E-value=2.3 Score=46.95 Aligned_cols=75 Identities=19% Similarity=0.112 Sum_probs=44.8
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEE--ec-cCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTV--LQ-LSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~--~~-~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
-.++++||.|.=+++-. +.|+.+|-.|.-.+. +. +....-..-..+.+++ .|..+++-+++.++..+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqakl~------- 241 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQAKLL------- 241 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcceeEE-------
Confidence 46789999998777654 478877766542211 11 1122222336788887 55555555566677777
Q ss_pred CCCCcEEE
Q psy4832 257 DPSINWEV 264 (770)
Q Consensus 257 ~~~g~~~~ 264 (770)
|.+|....
T Consensus 242 DRdG~~~~ 249 (641)
T KOG0772|consen 242 DRDGFEIV 249 (641)
T ss_pred ccCCceee
Confidence 56676433
No 73
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.93 E-value=0.78 Score=49.87 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=24.0
Q ss_pred CcceEEEeCCCCeEEEEe-CCEEEEEcCC
Q psy4832 353 WPTGLALSPLDDSLHFID-DRVIFKLTND 380 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D-~~~I~~i~~~ 380 (770)
.|.|+++|...+.||+++ +.-||++..+
T Consensus 209 Q~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 209 QPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp -EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred cceEEEEecccCCEEEecCccEEEEEecC
Confidence 589999998889999999 7889999843
No 74
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.88 E-value=0.12 Score=57.76 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.8
Q ss_pred ccccCCeeEEEEcC-CCCEEEEeCCCCc
Q psy4832 424 NMDLGSLTALAFSP-TGDLYIADIDARK 450 (770)
Q Consensus 424 ~~~l~~P~giavd~-~G~lyVaD~~~~r 450 (770)
...+..|..|++.| .|.+|++.+++.+
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~ 440 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGK 440 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCc
Confidence 45688999999998 5789999998874
No 75
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.85 E-value=0.58 Score=53.72 Aligned_cols=81 Identities=12% Similarity=0.060 Sum_probs=47.5
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
.+|+||+++|||. +|++...+.. +..+|..-....|+++.. + .+...+....=..|...
T Consensus 321 KsPHGV~vSPDGkylyVanklS~t---VSVIDv~k~k~~~~~~~~--~---------------~~~vvaevevGlGPLHT 380 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPT---VTVIDVRKLDDLFDGKIK--P---------------RDAVVAEPELGLGPLHT 380 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCc---EEEEEChhhhhhhhccCC--c---------------cceEEEeeccCCCcceE
Confidence 4699999999998 8888877664 566664332222332210 0 01111111112358899
Q ss_pred EEcCCCcEEEEcCCCceEEeee
Q psy4832 507 SVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~~i~ 528 (770)
+++++|..|++=.-...|-+.+
T Consensus 381 aFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred EECCCCCEEEeEeecceeEEEe
Confidence 9999999988754444555443
No 76
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.77 E-value=0.39 Score=53.55 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=42.8
Q ss_pred eEEEEcCCCCEEEEeCc-eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 183 VALTSGPDGSLYVGDFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~~-~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..+..|.+|.+||+..+ +.|-..++..+......-...++...++..| .+|.||+.+. .+|+++.
T Consensus 250 ~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D-~dGsLWv~t~--~giv~~~ 315 (671)
T COG3292 250 LLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLD-TDGSLWVGTY--GGIVRYL 315 (671)
T ss_pred eeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeec-cCCCEeeecc--CceEEEe
Confidence 34567889999998876 5555556655443322112334455788888 5999999876 4677774
No 77
>KOG1446|consensus
Probab=95.63 E-value=3.3 Score=42.95 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=129.2
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEec-cCcc-CCccCCCCCcccccccccCceEEEEcCCCCEEEEeC---ceEEEE
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMG-TGLQ-RPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF---NLVRRL 204 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g-~G~~-~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~---~~I~~i 204 (770)
..+.+-+..+|..+..+. ....+....- +|.+ +.+.|..-+ ..-++|.. .+..+.-+.. +.||-+
T Consensus 16 ~i~sl~fs~~G~~litss-~dDsl~LYd~~~g~~~~ti~skkyG--~~~~~Fth-------~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSS-EDDSLRLYDSLSGKQVKTINSKKYG--VDLACFTH-------HSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ceeEEEecCCCCEEEEec-CCCeEEEEEcCCCceeeEeeccccc--ccEEEEec-------CCceEEEccCCCCCceEEE
Confidence 345566778887766654 5555555532 3443 222222111 01122222 2222222222 356666
Q ss_pred cC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC
Q psy4832 205 TP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN 283 (770)
Q Consensus 205 ~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~ 283 (770)
+. +.+.++.+. +--.....|.++|. ++.+++-.....|+.++.... ...|.+
T Consensus 86 sl~dNkylRYF~---GH~~~V~sL~~sP~-~d~FlS~S~D~tvrLWDlR~~--~cqg~l--------------------- 138 (311)
T KOG1446|consen 86 SLHDNKYLRYFP---GHKKRVNSLSVSPK-DDTFLSSSLDKTVRLWDLRVK--KCQGLL--------------------- 138 (311)
T ss_pred EeecCceEEEcC---CCCceEEEEEecCC-CCeEEecccCCeEEeeEecCC--CCceEE---------------------
Confidence 63 456666663 23344678999995 489999888888877742100 111111
Q ss_pred cccccccccCcceEEEccCCcEEEEeCCC--eEEECC----CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceE
Q psy4832 284 GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP----EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGL 357 (770)
Q Consensus 284 g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~----~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gl 357 (770)
.+..+--+|+||+|.++.+-.+. |..+|. .|-++++.=. ......=+.|
T Consensus 139 ------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~-------------------~~~~~ew~~l 193 (311)
T KOG1446|consen 139 ------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSIT-------------------DNDEAEWTDL 193 (311)
T ss_pred ------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccC-------------------CCCccceeee
Confidence 12234567999999877665443 655552 2333333211 0112234689
Q ss_pred EEeCCCCe-EEEEe-CCEEEEEc-CCCcEE-EEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEE
Q psy4832 358 ALSPLDDS-LHFID-DRVIFKLT-NDLKVK-IVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTAL 433 (770)
Q Consensus 358 a~d~~~g~-lyv~D-~~~I~~i~-~~G~v~-~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gi 433 (770)
.++| +|. |.++. ++.++.++ .+|.+. .+.+.+.. ...|-+-
T Consensus 194 ~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~----------------------------------~~~~~~a 238 (311)
T KOG1446|consen 194 EFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNA----------------------------------GNLPLSA 238 (311)
T ss_pred EEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCC----------------------------------CCcceeE
Confidence 9999 775 66666 56788888 678743 44443322 2346777
Q ss_pred EEcCCCCEEEEeCCCCceeeEEEEcCCCcE
Q psy4832 434 AFSPTGDLYIADIDARKVNALRVIDSTGRM 463 (770)
Q Consensus 434 avd~~G~lyVaD~~~~ri~~i~~i~~~G~i 463 (770)
++.|+|..+++-.+.++|+. +.+ .+|..
T Consensus 239 ~ftPds~Fvl~gs~dg~i~v-w~~-~tg~~ 266 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHV-WNL-ETGKK 266 (311)
T ss_pred EECCCCcEEEEecCCCcEEE-EEc-CCCcE
Confidence 89999998888888777653 333 45543
No 78
>KOG0263|consensus
Probab=95.63 E-value=1 Score=51.79 Aligned_cols=66 Identities=26% Similarity=0.346 Sum_probs=41.7
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcE-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRM-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
..+|+++|.|.-.++-...+.| .|+.+ ++|++ ..+.|. -+....|.+
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I-~iWDl-~~~~~v~~l~~H------------------------------t~ti~SlsF 627 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLI-KIWDL-ANGSLVKQLKGH------------------------------TGTIYSLSF 627 (707)
T ss_pred eEEEEEcCCCceEeecccCCcE-EEEEc-CCCcchhhhhcc------------------------------cCceeEEEE
Confidence 5889999998765555444433 23332 34442 222221 123567999
Q ss_pred cCCCcEEEEcCCCceEEee
Q psy4832 509 SPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 509 ~~dG~lyvaD~~~~~I~~i 527 (770)
+.||.+++++.+++.|+.-
T Consensus 628 S~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 628 SRDGNVLASGGADNSVRLW 646 (707)
T ss_pred ecCCCEEEecCCCCeEEEE
Confidence 9999999999988877654
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.59 E-value=3.1 Score=42.19 Aligned_cols=146 Identities=20% Similarity=0.206 Sum_probs=75.2
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
..++++.|++.++++-. +.|+.++.+ ++....+.. .......+.+.| ++..+++-..++.|..++...
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~----- 82 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET----- 82 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec---CCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc-----
Confidence 46778888876555433 466666543 333222211 111224788887 454444444466776664211
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-CC-eEEECCC-CcEEEeecCCCCCCCc
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-TN-IRVVSPE-GIIHTLIGHHKHHNIW 335 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-~~-Ir~id~~-G~i~t~~g~~~~~~~~ 335 (770)
......+.+. -..+..+++.+++.++++.. .. |+.++.. +.....+..
T Consensus 83 ~~~~~~~~~~----------------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------- 133 (289)
T cd00200 83 GECVRTLTGH----------------------TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG------- 133 (289)
T ss_pred ccceEEEecc----------------------CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-------
Confidence 0112122110 11356788888777776655 33 7777654 433222211
Q ss_pred CCCccCCCcccccccccCcceEEEeCCCCeEEEE-e-CCEEEEEcCC
Q psy4832 336 SPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-D-DRVIFKLTND 380 (770)
Q Consensus 336 ~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D-~~~I~~i~~~ 380 (770)
.-..+..++++| ++.++++ . ++.|..++..
T Consensus 134 --------------~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~ 165 (289)
T cd00200 134 --------------HTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLR 165 (289)
T ss_pred --------------CCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcc
Confidence 112467888998 5665544 3 5667776643
No 80
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=95.39 E-value=1.2 Score=48.07 Aligned_cols=73 Identities=26% Similarity=0.299 Sum_probs=46.6
Q ss_pred CcceEEEeCCCCeEEEEe--C------CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccc
Q psy4832 353 WPTGLALSPLDDSLHFID--D------RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASN 424 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D--~------~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 424 (770)
-|.+|++.+ +|.+||++ . ++|++++.+|++....-.|........+. ...
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~------------------~~~--- 143 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGT------------------SGR--- 143 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCcc------------------ccc---
Confidence 688999965 99999998 6 89999999998743332232211110000 000
Q ss_pred cccCCeeEEEEcCCCC-EEEEeCC
Q psy4832 425 MDLGSLTALAFSPTGD-LYIADID 447 (770)
Q Consensus 425 ~~l~~P~giavd~~G~-lyVaD~~ 447 (770)
..=....+||+.++|. ||++-..
T Consensus 144 ~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 144 RNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred cCCCCeEEEEECCCCCEEEEEECc
Confidence 0113479999999999 7777543
No 81
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=1.2 Score=43.65 Aligned_cols=183 Identities=16% Similarity=0.150 Sum_probs=101.5
Q ss_pred eEEEEcCCCCEEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 183 VALTSGPDGSLYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
+++..+ +|.||.+-. .+||+.+.+ |++...-.+.+ .-..-.|+... .+.+|...+..+.-++++.
T Consensus 49 QGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~--gd~~y~LTw~egvaf~~d~------ 118 (262)
T COG3823 49 QGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKL--GDYFYQLTWKEGVAFKYDA------ 118 (262)
T ss_pred cceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeec--cceEEEEEeccceeEEECh------
Confidence 456665 567777654 489999976 66654332211 11122456554 6788888888777777743
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-----CcEE-EeecCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-----GIIH-TLIGHHK 330 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-----G~i~-t~~g~~~ 330 (770)
+.- + -.|.. .+.|+ -.|++-| +.+|+.+|+.. ++..||. ++|. +.-|.+
T Consensus 119 -~t~-~---~lg~~------~y~Ge-----------GWgLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p- 174 (262)
T COG3823 119 -DTL-E---ELGRF------SYEGE-----------GWGLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP- 174 (262)
T ss_pred -HHh-h---hhccc------ccCCc-----------ceeeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCee-
Confidence 110 0 01111 12232 2477776 44588898877 8877764 2222 222211
Q ss_pred CCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC-CcEEEEecC-CCCCCCCCCCCcccccc
Q psy4832 331 HHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND-LKVKIVAGI-PLHCRTGDKDKRDFKDK 406 (770)
Q Consensus 331 ~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~-G~v~~vaG~-~~~~~~~~~~~~~~~~~ 406 (770)
...-+.|-.- +|.||.-= +.+|.||+|+ |+|....-. +......
T Consensus 175 --------------------v~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~---------- 222 (262)
T COG3823 175 --------------------VSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELN---------- 222 (262)
T ss_pred --------------------cccccceeee--ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcC----------
Confidence 1112233333 67777543 6899999975 887755422 1111000
Q ss_pred ccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEeC
Q psy4832 407 QSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADI 446 (770)
Q Consensus 407 ~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~ 446 (770)
......+-++|||.++++ ++|++-.
T Consensus 223 ---------------~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 223 ---------------LDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ---------------ccccccccccceeecCcCCeEEEecC
Confidence 011224678999999976 6888754
No 82
>KOG0640|consensus
Probab=95.35 E-value=4.1 Score=42.18 Aligned_cols=194 Identities=12% Similarity=0.191 Sum_probs=107.8
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCc--EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVLSLESVADPSIN--WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~--~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
.+.|.|+| ...|.++....+.|.-++-... .-. ..++ ..-..-+.|.++|
T Consensus 175 vn~l~FHP-re~ILiS~srD~tvKlFDfsK~----saKrA~K~~-----------------------qd~~~vrsiSfHP 226 (430)
T KOG0640|consen 175 VNDLDFHP-RETILISGSRDNTVKLFDFSKT----SAKRAFKVF-----------------------QDTEPVRSISFHP 226 (430)
T ss_pred ccceeecc-hhheEEeccCCCeEEEEecccH----HHHHHHHHh-----------------------hccceeeeEeecC
Confidence 35789998 7788888888777766632100 000 0000 0011246899999
Q ss_pred CCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCCEEEEEcC
Q psy4832 302 DKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDRVIFKLTN 379 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~~I~~i~~ 379 (770)
.|+...+-+.. +|..|-+- ..-++... ..+..-...+.+-.++ .++|||+. +.
T Consensus 227 sGefllvgTdHp~~rlYdv~T-~Qcfvsan----------------Pd~qht~ai~~V~Ys~-t~~lYvTa-------Sk 281 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNT-YQCFVSAN----------------PDDQHTGAITQVRYSS-TGSLYVTA-------SK 281 (430)
T ss_pred CCceEEEecCCCceeEEeccc-eeEeeecC----------------cccccccceeEEEecC-CccEEEEe-------cc
Confidence 99855554444 66655432 11222111 0111223456778888 99999997 45
Q ss_pred CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC
Q psy4832 380 DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 380 ~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
||.|+..-|....|...... ..++ ....+..|..+|....+... ..+.+++.+.+
T Consensus 282 DG~IklwDGVS~rCv~t~~~-----------------AH~g-------sevcSa~Ftkn~kyiLsSG~-DS~vkLWEi~t 336 (430)
T KOG0640|consen 282 DGAIKLWDGVSNRCVRTIGN-----------------AHGG-------SEVCSAVFTKNGKYILSSGK-DSTVKLWEIST 336 (430)
T ss_pred CCcEEeeccccHHHHHHHHh-----------------hcCC-------ceeeeEEEccCCeEEeecCC-cceeeeeeecC
Confidence 66666666655555211000 0000 12355667777765555444 44557788877
Q ss_pred CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCC
Q psy4832 460 TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDG 512 (770)
Q Consensus 460 ~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG 512 (770)
..-+..+.|.+..+.+ -..+++.|+.-..-.+.||.
T Consensus 337 ~R~l~~YtGAg~tgrq-----------------~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQ-----------------KHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred CceEEEEecCCcccch-----------------hhhhhhhhcCccceEEcccc
Confidence 7778888888755543 23556667766666665543
No 83
>PRK01742 tolB translocation protein TolB; Provisional
Probab=95.14 E-value=3.6 Score=46.32 Aligned_cols=64 Identities=22% Similarity=0.158 Sum_probs=34.5
Q ss_pred eEEEEcCCCC-E-EEEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 183 VALTSGPDGS-L-YVGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~-l-yv~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
..+++.|||. | |++.. ..|+.++.. |+...+.... . .-..++++|.+..|+++.. ++-+|+.++
T Consensus 207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~--g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR--G--HNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC--C--ccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 4567888886 3 33332 268888765 4433332111 1 1235789984445766532 234577774
No 84
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.12 E-value=0.24 Score=55.34 Aligned_cols=89 Identities=21% Similarity=0.389 Sum_probs=55.9
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCc----------------EEEEEeccC-CccCCCCcEEEEECCCccccCCCCCCc
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKH----------------QILRVLSLE-SVADPSINWEVAVGSGERCIPGDETNC 280 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~----------------~I~~i~~~~-~~~~~~g~~~~vaG~g~~~~p~~~~~~ 280 (770)
++.+..|..|++.|..+.+|++.+++. +|+|+-... ...+....+++++-.|..- ....
T Consensus 413 AT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~----~~~~ 488 (616)
T COG3211 413 ATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPS----VLEG 488 (616)
T ss_pred CccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcc----cccc
Confidence 567889999999999999999988765 566664322 1122233555554322210 0011
Q ss_pred CCCcccccccccCcceEEEccCCcEEEEeC
Q psy4832 281 GDNGPALAAKLSHPKGLAIKADKTMFIADG 310 (770)
Q Consensus 281 g~~g~~~~a~l~~P~gIavd~~G~lYvaD~ 310 (770)
+.........|+.|.+|+||+.|+|||+.-
T Consensus 489 ~~~~~~~~~~f~~PDnl~fD~~GrLWi~TD 518 (616)
T COG3211 489 GASANINANWFNSPDNLAFDPWGRLWIQTD 518 (616)
T ss_pred ccccCcccccccCCCceEECCCCCEEEEec
Confidence 111112225688999999999999999743
No 85
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.04 E-value=4.5 Score=40.93 Aligned_cols=66 Identities=12% Similarity=0.156 Sum_probs=43.3
Q ss_pred EEccCCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEE
Q psy4832 298 AIKADKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVI 374 (770)
Q Consensus 298 avd~~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I 374 (770)
++..++.+|+++... |+.+|. +|++.--.-... .+..+ ..++ ++.|||.. ++.|
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-------------------~~~~~--~~~~--~~~v~v~~~~~~l 88 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-------------------PISGA--PVVD--GGRVYVGTSDGSL 88 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-------------------CGGSG--EEEE--TTEEEEEETTSEE
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-------------------cccce--eeec--ccccccccceeee
Confidence 554578899996655 999996 787643222111 11112 2444 78899887 5799
Q ss_pred EEEc-CCCcEEEE
Q psy4832 375 FKLT-NDLKVKIV 386 (770)
Q Consensus 375 ~~i~-~~G~v~~v 386 (770)
+.++ .+|++..-
T Consensus 89 ~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 89 YALDAKTGKVLWS 101 (238)
T ss_dssp EEEETTTSCEEEE
T ss_pred EecccCCcceeee
Confidence 9999 88987654
No 86
>KOG0286|consensus
Probab=94.83 E-value=5.6 Score=40.99 Aligned_cols=136 Identities=24% Similarity=0.349 Sum_probs=81.3
Q ss_pred cceEEEcc-CCcEEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 294 PKGLAIKA-DKTMFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 294 P~gIavd~-~G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
-.+|++.| +++.||+-+.. |+-+-...-+.++.|.... .+.+.|-| +|.-|+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD----------------------INsv~ffP-~G~afa 245 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD----------------------INSVRFFP-SGDAFA 245 (343)
T ss_pred EEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc----------------------cceEEEcc-CCCeee
Confidence 34677777 88999985543 4444334456666655321 33566777 777666
Q ss_pred Ee--CCEEEEEc--CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEE
Q psy4832 369 ID--DRVIFKLT--NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIA 444 (770)
Q Consensus 369 ~D--~~~I~~i~--~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVa 444 (770)
+- +...+.+| .|.++.++...+. ....++++|+.+|+|.++
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys~~~~-----------------------------------~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYSHDSI-----------------------------------ICGITSVAFSKSGRLLFA 290 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeeccCcc-----------------------------------cCCceeEEEcccccEEEe
Confidence 54 44444444 6666666553221 122588999999999999
Q ss_pred eCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCC
Q psy4832 445 DIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 445 D~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~ 520 (770)
-.....++ .-|. .|+ +..+.|-. ++.++|.++|||.-.-+-.-
T Consensus 291 gy~d~~c~---vWDtlk~e~vg~L~GHe------------------------------NRvScl~~s~DG~av~TgSW 335 (343)
T KOG0286|consen 291 GYDDFTCN---VWDTLKGERVGVLAGHE------------------------------NRVSCLGVSPDGMAVATGSW 335 (343)
T ss_pred eecCCcee---EeeccccceEEEeeccC------------------------------CeeEEEEECCCCcEEEecch
Confidence 77665433 3332 343 33344332 45788999999977665443
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.75 E-value=7.1 Score=44.20 Aligned_cols=63 Identities=17% Similarity=0.004 Sum_probs=35.3
Q ss_pred EEEEcCCCC-EE-EEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 184 ALTSGPDGS-LY-VGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~-ly-v~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
...+.|||. |+ +.+. ..|+.++.+ |+...+... . . .....+++|.+..|+++.. ++.+|+.++
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~-g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-P-G--INGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-C-C--CcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 456788886 43 3333 268888865 444333221 1 1 1235688985556776533 234688874
No 88
>KOG1446|consensus
Probab=94.68 E-value=6.4 Score=40.94 Aligned_cols=232 Identities=14% Similarity=0.172 Sum_probs=118.5
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEE-EeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYI-SDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyv-sd~~~~~I~~i~~~~~~~ 256 (770)
.+..|.++++|...++.. +.|+.++ .+|+....+... -..+.-+.+......+.- +...+..|+-++.
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk---kyG~~~~~Fth~~~~~i~sStk~d~tIryLsl----- 87 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK---KYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL----- 87 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc---cccccEEEEecCCceEEEccCCCCCceEEEEe-----
Confidence 468899999999887643 4777777 467776655321 111222223221222222 2222344444422
Q ss_pred CCCCcE-EEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCC
Q psy4832 257 DPSINW-EVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHN 333 (770)
Q Consensus 257 ~~~g~~-~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~ 333 (770)
-+..+ ..+.|-.. .-..|.+.|-++.|++-+.. ||..|.. +.
T Consensus 88 -~dNkylRYF~GH~~----------------------~V~sL~~sP~~d~FlS~S~D~tvrLWDlR--~~---------- 132 (311)
T KOG1446|consen 88 -HDNKYLRYFPGHKK----------------------RVNSLSVSPKDDTFLSSSLDKTVRLWDLR--VK---------- 132 (311)
T ss_pred -ecCceEEEcCCCCc----------------------eEEEEEecCCCCeEEecccCCeEEeeEec--CC----------
Confidence 11222 22222211 24578888878888886543 6655532 00
Q ss_pred CcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccc
Q psy4832 334 IWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTK 411 (770)
Q Consensus 334 ~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~ 411 (770)
.|.+ -..+..+--.|+|| +|-++.+-+ ..|..+|.. .+-..|...+..
T Consensus 133 -----~cqg-----~l~~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~R----s~dkgPF~tf~i--------------- 182 (311)
T KOG1446|consen 133 -----KCQG-----LLNLSGRPIAAFDP-EGLIFALANGSELIKLYDLR----SFDKGPFTTFSI--------------- 182 (311)
T ss_pred -----CCce-----EEecCCCcceeECC-CCcEEEEecCCCeEEEEEec----ccCCCCceeEcc---------------
Confidence 0100 00122344579999 888887763 356555521 111111111000
Q ss_pred cccccCCcccccccccCCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcE-EEeecCccCCCCCcCCCCCcccccC
Q psy4832 412 KSTVQDDSVRASNMDLGSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRM-FDFAGRWQSDKKNCNTTNCAEFEKN 488 (770)
Q Consensus 412 ~~~~~~~~~~a~~~~l~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i-~~~aG~~~~~~~~~~~~~~~~~~~~ 488 (770)
.......-+.|-|+++|. |.++...+ . +..+| .+|.+ .++.+...
T Consensus 183 -----------~~~~~~ew~~l~FS~dGK~iLlsT~~s-~---~~~lDAf~G~~~~tfs~~~~----------------- 230 (311)
T KOG1446|consen 183 -----------TDNDEAEWTDLEFSPDGKSILLSTNAS-F---IYLLDAFDGTVKSTFSGYPN----------------- 230 (311)
T ss_pred -----------CCCCccceeeeEEcCCCCEEEEEeCCC-c---EEEEEccCCcEeeeEeeccC-----------------
Confidence 001223458899999998 55555444 2 55666 36763 33443221
Q ss_pred ccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEee
Q psy4832 489 SKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 489 ~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i 527 (770)
..+.|-+-++.|||..++.-.++++|...
T Consensus 231 ----------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw 259 (311)
T KOG1446|consen 231 ----------AGNLPLSATFTPDSKFVLSGSDDGTIHVW 259 (311)
T ss_pred ----------CCCcceeEEECCCCcEEEEecCCCcEEEE
Confidence 12346677888999887776666555433
No 89
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.59 E-value=5.8 Score=40.09 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=78.5
Q ss_pred ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCC
Q psy4832 199 NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDE 277 (770)
Q Consensus 199 ~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~ 277 (770)
+.|..+|+ +|+........ .....+...++. .++.+|+++ ..+.|+.++. .+|++.--.-...
T Consensus 3 g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~-~~~~v~~~~-~~~~l~~~d~------~tG~~~W~~~~~~------- 66 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLG-PGIGGPVATAVP-DGGRVYVAS-GDGNLYALDA------KTGKVLWRFDLPG------- 66 (238)
T ss_dssp SEEEEEETTTTEEEEEEECS-SSCSSEEETEEE-ETTEEEEEE-TTSEEEEEET------TTSEEEEEEECSS-------
T ss_pred CEEEEEECCCCCEEEEEECC-CCCCCccceEEE-eCCEEEEEc-CCCEEEEEEC------CCCCEEEEeeccc-------
Confidence 45677776 67766554331 123333333553 378999985 5578888842 2565432211100
Q ss_pred CCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEEC-CCCcEEEee-cCCCCCCCcCCCccCCCcccccccccCc
Q psy4832 278 TNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVS-PEGIIHTLI-GHHKHHNIWSPFNCHRSFPASTAQLQWP 354 (770)
Q Consensus 278 ~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id-~~G~i~t~~-g~~~~~~~~~p~~~~~~~~~~~~~l~~P 354 (770)
.+..+ ..+ .++.|||....+ |+.+| .+|++.--. ..... ...+..+
T Consensus 67 ------------~~~~~--~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~----------------~~~~~~~ 115 (238)
T PF13360_consen 67 ------------PISGA--PVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP----------------PAGVRSS 115 (238)
T ss_dssp ------------CGGSG--EEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC----------------TCSTB--
T ss_pred ------------cccce--eee-cccccccccceeeeEecccCCcceeeeecccccc----------------ccccccc
Confidence 01111 233 367899988666 89998 788775432 21110 1113445
Q ss_pred ceEEEeCCCCeEEEEe-CCEEEEEc-CCCcEEE
Q psy4832 355 TGLALSPLDDSLHFID-DRVIFKLT-NDLKVKI 385 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D-~~~I~~i~-~~G~v~~ 385 (770)
...+++ ++.+|+.. ++.|+.++ .+|++..
T Consensus 116 ~~~~~~--~~~~~~~~~~g~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 116 SSPAVD--GDRLYVGTSSGKLVALDPKTGKLLW 146 (238)
T ss_dssp SEEEEE--TTEEEEEETCSEEEEEETTTTEEEE
T ss_pred cCceEe--cCEEEEEeccCcEEEEecCCCcEEE
Confidence 566666 67889988 78999999 5687643
No 90
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.54 E-value=10 Score=42.66 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=35.8
Q ss_pred eEEEEcCCCC-E-EEEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 183 VALTSGPDGS-L-YVGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~-l-yv~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
...++.|||. | |++.. ..|+.++.+ |+...+.... .....++++|.+..|+++.. ++.+|+.++
T Consensus 202 ~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d 273 (429)
T PRK03629 202 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTGSLNLYVMD 273 (429)
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCCCcEEEEEE
Confidence 4567889986 3 33322 367777654 4444433211 11235789985556777633 334688775
No 91
>PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold
Probab=94.47 E-value=0.68 Score=46.02 Aligned_cols=97 Identities=19% Similarity=0.252 Sum_probs=60.6
Q ss_pred eec-CceEEEEEe----------cCCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEc
Q psy4832 633 KLT-NDLKIRALK----------KGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYD 701 (770)
Q Consensus 633 ~~~-~g~l~~~~~----------~~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd 701 (770)
.|+ .|+|++.+. .....++|.|++. +.+ .++..|.+..|..+.++.....+....+..-....|.||
T Consensus 2 ~yd~~Grl~~~~~~~~~~~~~~~~~~~~~~~ty~~~-~iv-~t~~~~~~~t~~Ln~~G~v~~~~~~~~~~~~~t~~FtYn 79 (197)
T PF15283_consen 2 EYDAKGRLISITTTQEYEAGFEFKEENVTTYTYSPN-KIV-VTDEEGNVSTYTLNDNGYVTSCVSQDYEGYTDTYTFTYN 79 (197)
T ss_pred cCCCCCCEEEEEEecccccccceeeeEEEEEEECCC-EEE-EEeCCCCEEEEEEccCCcEEEEEEEccCCCEEEEEEEEC
Confidence 344 378876663 1244567888743 333 377788888888887776655555333335578899999
Q ss_pred cCCcEeEEEec-Cc---EEEEEeCCCCCeEEEEcC
Q psy4832 702 ERGFLIFAQMF-RH---KYYIATDQCGTPVMVFNQ 732 (770)
Q Consensus 702 ~~G~l~~~~~~-~~---~~~~~~d~~G~~~~~~d~ 732 (770)
++|+|+.+... +. ...+.+. .|.++.+...
T Consensus 80 ~~~qL~~i~~~~~~~~~~~~itw~-nGni~~i~~~ 113 (197)
T PF15283_consen 80 ADGQLTKITESNNDSYSSYTITWE-NGNITSITTK 113 (197)
T ss_pred CCCceEEEEEECCCceEEEEEEEE-CCCEEEEEEe
Confidence 99999999944 33 2333333 3666665443
No 92
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=94.46 E-value=3 Score=42.11 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEE
Q psy4832 650 VTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVT 685 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~ 685 (770)
+.|+||+.|=++......- ..+|+|+..+.|...+
T Consensus 123 l~~~~nd~GfI~~~~~~e~-~~~Y~Yd~~g~pl~~t 157 (236)
T PF06788_consen 123 LTYEYNDNGFIVSAKGKET-KVTYRYDDEGFPLGKT 157 (236)
T ss_pred eEEEECCCcEEEEeccCCc-ceEEEECCCCCccceE
Confidence 4578887776665433322 2667777777664444
No 93
>KOG2106|consensus
Probab=94.44 E-value=9.9 Score=42.07 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=76.9
Q ss_pred cCceEEEEcCCCCEEEEeCc-eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 180 LTPVALTSGPDGSLYVGDFN-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~~-~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
..-..|++.++|.+.-+|.+ .|..+++.+...+.... .--..-+.|+.- .+|.|.- -...++|...+
T Consensus 247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~l-r~GtllS-GgKDRki~~Wd-------- 314 (626)
T KOG2106|consen 247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCML-RDGTLLS-GGKDRKIILWD-------- 314 (626)
T ss_pred eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEe-cCccEee-cCccceEEecc--------
Confidence 44567888888888888884 77777776654433211 122234566666 4666654 33344454442
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWS 336 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~ 336 (770)
.++..+.... ...++..|+-|+-. .+.|||.-+.| |..=+.+ +.-.++.|.+.
T Consensus 315 -~~y~k~r~~e-----------------lPe~~G~iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d------ 369 (626)
T KOG2106|consen 315 -DNYRKLRETE-----------------LPEQFGPIRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGD------ 369 (626)
T ss_pred -cccccccccc-----------------CchhcCCeeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccc------
Confidence 2232222111 11223456666655 34499988887 6654433 33334444432
Q ss_pred CCccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 337 PFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 337 p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.-.|+|..| +.++|++-
T Consensus 370 ----------------elwgla~hp-s~~q~~T~ 386 (626)
T KOG2106|consen 370 ----------------ELWGLATHP-SKNQLLTC 386 (626)
T ss_pred ----------------ceeeEEcCC-Chhheeec
Confidence 245899999 88888876
No 94
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.33 E-value=0.94 Score=45.52 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=74.8
Q ss_pred cCcceEEEccCCcEEEEeCCCeEEECC--CC-----cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC
Q psy4832 292 SHPKGLAIKADKTMFIADGTNIRVVSP--EG-----IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD 364 (770)
Q Consensus 292 ~~P~gIavd~~G~lYvaD~~~Ir~id~--~G-----~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g 364 (770)
+.=.-|+..|+|.||.....++++-.+ ++ ...+.++.++ .+.=..|++++ +|
T Consensus 34 ~~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig~g~--------------------W~~F~~i~~d~-~G 92 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIGDGG--------------------WNSFKFIFFDP-TG 92 (229)
T ss_dssp TT-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE-S---------------------GGG-SEEEE-T-TS
T ss_pred cccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccccCc--------------------ccceeEEEecC-Cc
Confidence 344578889999999998766666531 11 1112222221 12223799999 99
Q ss_pred eEEEEe-CCEEEEEcCC--CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCE
Q psy4832 365 SLHFID-DRVIFKLTND--LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDL 441 (770)
Q Consensus 365 ~lyv~D-~~~I~~i~~~--G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~l 441 (770)
.||..+ +..++|..+. +...-..+.+. .......+....|.++++|.|
T Consensus 93 ~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~-----------------------------~iG~~GW~~f~~vfa~~~GvL 143 (229)
T PF14517_consen 93 VLYAVTPDGKLYRHPRPTNGSDNWIGGSGK-----------------------------KIGGTGWNDFDAVFAGPNGVL 143 (229)
T ss_dssp -EEEEETT-EEEEES---STT--HHH-HSE-----------------------------EEE-SSGGGEEEEEE-TTS-E
T ss_pred cEEEeccccceeeccCCCccCcchhhccce-----------------------------ecccCCCccceEEEeCCCccE
Confidence 999877 4567666521 11111000000 000122345788999999999
Q ss_pred EEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCC
Q psy4832 442 YIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS 521 (770)
Q Consensus 442 yVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~ 521 (770)
|..+.+. ++++. ..|++.-..... ...+.....+..+.-|..+|+|.||.++ .+
T Consensus 144 Y~i~~dg-~~~~~--~~p~~~~~~W~~----------------------~s~~v~~~gw~~~~~i~~~~~g~L~~V~-~~ 197 (229)
T PF14517_consen 144 YAITPDG-RLYRR--YRPDGGSDRWLS----------------------GSGLVGGGGWDSFHFIFFSPDGNLWAVK-SN 197 (229)
T ss_dssp EEEETTE--EEEE-----SSTT--HHH----------------------H-EEEESSSGGGEEEEEE-TTS-EEEE--ET
T ss_pred EEEcCCC-ceEEe--CCCCCCCCcccc----------------------ccceeccCCcccceEEeeCCCCcEEEEe-cC
Confidence 9999766 43332 233322000000 0000111224558889999999999995 45
Q ss_pred ceEEeeec
Q psy4832 522 LHILALQH 529 (770)
Q Consensus 522 ~~I~~i~~ 529 (770)
+.++|-.+
T Consensus 198 G~lyr~~~ 205 (229)
T PF14517_consen 198 GKLYRGRP 205 (229)
T ss_dssp TEEEEES-
T ss_pred CEEeccCC
Confidence 57765433
No 95
>KOG0272|consensus
Probab=94.30 E-value=4.8 Score=43.40 Aligned_cols=173 Identities=16% Similarity=0.194 Sum_probs=95.6
Q ss_pred EEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCC-CcEEEEeCCCc--EEEEEeccCCccCC
Q psy4832 185 LTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPAD-GHLYISDAEKH--QILRVLSLESVADP 258 (770)
Q Consensus 185 la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~-g~lyvsd~~~~--~I~~i~~~~~~~~~ 258 (770)
..+..|+.++++-. +.+..+. ++++....+. +-...-.++.++|.. +.-.++-...+ ++|+++...
T Consensus 181 ~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~---gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~----- 252 (459)
T KOG0272|consen 181 CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR---GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET----- 252 (459)
T ss_pred eEeecCCCeEEEeecCCceeEeecCCcceeEEEe---ccccceeeEEEccCCCccceeeeccCCceeeeccCCCc-----
Confidence 34456888888765 4444444 4555554442 233456788888863 43334433333 344442111
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC--CcEEEeecCCCCCCC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE--GIIHTLIGHHKHHNI 334 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~--G~i~t~~g~~~~~~~ 334 (770)
.+..+. ..+..-..++++|+|....+-... -|..|.. -.+...-|.
T Consensus 253 --~l~~l~----------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH------ 302 (459)
T KOG0272|consen 253 --PLQDLE----------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH------ 302 (459)
T ss_pred --chhhhh----------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc------
Confidence 111111 122345578999999877664433 3333322 122111111
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC----CEEEEEcCCCcEEEEecCCCCCCCCCCCCcccccccccc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD----RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKT 410 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~----~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~ 410 (770)
=..-.+|++.+ +|.|..+-. +||+-+...-.+..++|.
T Consensus 303 ----------------s~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH--------------------- 344 (459)
T KOG0272|consen 303 ----------------SKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGH--------------------- 344 (459)
T ss_pred ----------------ccccceeEecC-CCceeeccCccchhheeecccCcEEEEeccc---------------------
Confidence 11345899999 999988752 677766444445566652
Q ss_pred ccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCC
Q psy4832 411 KKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDAR 449 (770)
Q Consensus 411 ~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ 449 (770)
+....+|+++|+|....+-+..+
T Consensus 345 ----------------~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 345 ----------------IKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ----------------ccceeeEeECCCceEEeecCCCC
Confidence 23468999999999888777654
No 96
>KOG1274|consensus
Probab=94.17 E-value=14 Score=43.77 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=78.9
Q ss_pred ceEEEEcCCCC-EEEEeCc-eEEEEcCCCc--EEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 182 PVALTSGPDGS-LYVGDFN-LVRRLTPEGN--VFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 182 P~~la~~~dG~-lyv~d~~-~I~~i~~~G~--v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
=..|++|++|+ |++++.+ .||+++..-. -...+.. .-..-.+++.. .+.+++-+.++.|.++..
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~---s~~f~~~s~~~tv~~y~f------ 83 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACY---SNHFLTGSEQNTVLRYKF------ 83 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeec---ccceEEeeccceEEEeeC------
Confidence 36789999987 5556665 5666653211 0011100 00112455554 346666677778777742
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCc-ceEEEccCCcEEEEeCCC--eEEECCC--CcEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHP-KGLAIKADKTMFIADGTN--IRVVSPE--GIIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P-~gIavd~~G~lYvaD~~~--Ir~id~~--G~i~t~~g~~~~~ 332 (770)
+++.... .-++|..| +.++|+.+|++.++-+.. |..++.+ +.+..+-|...
T Consensus 84 ps~~~~~----------------------iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-- 139 (933)
T KOG1274|consen 84 PSGEEDT----------------------ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-- 139 (933)
T ss_pred CCCCccc----------------------eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--
Confidence 2222111 11334444 578888888877765444 5555532 34444444332
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEE-Ee-CCEEEEEc-CCCcEE
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF-ID-DRVIFKLT-NDLKVK 384 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv-~D-~~~I~~i~-~~G~v~ 384 (770)
.-.+|.++| ++++.+ ++ ++.|+.++ .++.+.
T Consensus 140 --------------------pVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~ 173 (933)
T KOG1274|consen 140 --------------------PVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS 173 (933)
T ss_pred --------------------ceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh
Confidence 124788899 776554 44 67777777 556544
No 97
>PF15283 DUF4595: Domain of unknown function (DUF4595) with porin-like fold
Probab=93.99 E-value=0.98 Score=44.90 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=21.1
Q ss_pred CceEEEEEe----cCCceEEEEEeCCCCEEEEEcCCCC---EEEEEecC
Q psy4832 636 NDLKIRALK----KGRFDVTYDYDHLDRLSVRKDNYGN---ITQFFYNN 677 (770)
Q Consensus 636 ~g~l~~~~~----~~g~~~~y~YD~~grlv~~~d~~G~---~~~~~y~~ 677 (770)
+|.+++... ..-....|.||+.|+|+..+-..+. ...+.|.+
T Consensus 56 ~G~v~~~~~~~~~~~~~t~~FtYn~~~qL~~i~~~~~~~~~~~~itw~n 104 (197)
T PF15283_consen 56 NGYVTSCVSQDYEGYTDTYTFTYNADGQLTKITESNNDSYSSYTITWEN 104 (197)
T ss_pred CCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEECCCceEEEEEEEEC
Confidence 555544443 1224456666666666654443333 35555554
No 98
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.96 E-value=0.12 Score=36.93 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=28.7
Q ss_pred ccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 219 TQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 219 ~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.++..|.+||+|+.++.||++|...+.|.+.+
T Consensus 6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~ 37 (43)
T smart00135 6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN 37 (43)
T ss_pred CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEe
Confidence 36788999999999999999999999998884
No 99
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.71 E-value=11 Score=42.28 Aligned_cols=63 Identities=17% Similarity=0.147 Sum_probs=35.1
Q ss_pred EEEEcCCCC-EEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 184 ALTSGPDGS-LYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~-lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
..++.|||+ |+++.. ..|++++.+ |+...+.... .....++++|.+..|+++-. ++..|+.++
T Consensus 208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR----GINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC----CCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 456778886 444432 268888865 4444333211 11235788985556766532 345788874
No 100
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.67 E-value=0.14 Score=36.52 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=27.5
Q ss_pred cccCcceEEEeCCCCeEEEEe--CCEEEEEcCCCc
Q psy4832 350 QLQWPTGLALSPLDDSLHFID--DRVIFKLTNDLK 382 (770)
Q Consensus 350 ~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~G~ 382 (770)
.+..|.+||+|+..+.||++| .+.|.+.+-+|.
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 477899999999888999999 467888877663
No 101
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.62 E-value=0.17 Score=36.50 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCEEEEeC--c-eEEEEcCCCcEE-EEeccCcccccceeEEEEeC
Q psy4832 191 GSLYVGDF--N-LVRRLTPEGNVF-TVLQLSATQVSYQYYLALSP 231 (770)
Q Consensus 191 G~lyv~d~--~-~I~~i~~~G~v~-~~~~~~~~~~~~p~~lav~p 231 (770)
|.||++|. + .|.+.+.+|+-. +++ ...+.+|.+||+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi---~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI---SDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE---ESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE---ECCCCCcCEEEECC
Confidence 57999998 5 899999998764 444 45699999999985
No 102
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=93.56 E-value=14 Score=40.65 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEEEcCCCcEEEEcCCCceEEeeecCCcccC-------------------CCCcEEEeCCCCCcEEEEecCCceEEEEcC
Q psy4832 505 ALSVSPDGVVNVADQGSLHILALQHYLPTHD-------------------EHGEFKIPYPATNEIYVFNRYGQHITTRDM 565 (770)
Q Consensus 505 giav~~dG~lyvaD~~~~~I~~i~~~~~~~~-------------------~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~ 565 (770)
-|.+...|.||+-|..+-++.++.-.+|..- ..|.+ |+--..+..++++..+.-...+--
T Consensus 280 rIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~-ia~VSRGkaFi~~~~~~~~iqv~~ 358 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDY-IALVSRGKAFIMRPWDGYSIQVGK 358 (668)
T ss_pred EEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcE-EEEEecCcEEEECCCCCeeEEcCC
Confidence 3677778999999999999999877655321 11222 222234566777666554444433
Q ss_pred CCCCcEEE-EEecCCCCCCceEEEECCCCCEEEEEEcCCCc-ceEeccCCcccc---CCCCcceee-cce---eeeeecC
Q psy4832 566 TSGKPRYS-FLYSKNTSFGKLSTITDASGNKINFLRDYSNV-AQLQWPTGLALS---PLDDSLHFI-DDR---VIFKLTN 636 (770)
Q Consensus 566 ~tg~~~y~-~~Yd~~~~~G~L~~vtd~~G~~~~~~~d~~~~-~~~~~p~G~~~~---~~d~~~~~~-~~~---~~~~~~~ 636 (770)
..+ .+|. +.-+ ++=..+-+.+|..+-++...++. .+++-+-|..+. ..++....+ +.+ ..+..++
T Consensus 359 ~~~-VrY~r~~~~-----~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 359 KGG-VRYRRIQVD-----PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCc-eEEEEEccC-----CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 333 3333 2222 23233444566666665443332 334444443111 222222222 111 1234456
Q ss_pred ceEEEEEec--CCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCc
Q psy4832 637 DLKIRALKK--GRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGF 705 (770)
Q Consensus 637 g~l~~~~~~--~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~ 705 (770)
|... .+|. -|.-+.|.|.+.+|-++---|.|-.+|-.-=.+-....+..++.| .+--..=++|+.|+
T Consensus 433 gnv~-~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~r 501 (668)
T COG4946 433 GNVR-LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGR 501 (668)
T ss_pred CCee-EecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCCc
Confidence 6655 3332 566778888888888888888887765433223333345556655 44444444555555
No 103
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.35 E-value=0.25 Score=35.55 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=17.8
Q ss_pred CeEEEEe--CC-EEEEEcCCCc-EEEEe
Q psy4832 364 DSLHFID--DR-VIFKLTNDLK-VKIVA 387 (770)
Q Consensus 364 g~lyv~D--~~-~I~~i~~~G~-v~~va 387 (770)
++||++| .+ +|.+.+.+|. .++++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi 28 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI 28 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE
Confidence 5799999 47 8999888875 33443
No 104
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.01 E-value=19 Score=40.52 Aligned_cols=48 Identities=17% Similarity=-0.011 Sum_probs=24.9
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC--CcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE--KHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~ 250 (770)
+|..++.+|.....+..... .-...+++|.+..|+++... +..|+.++
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~---~v~~p~wSPDG~~la~~s~~~~~~~I~~~d 226 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPE---PIISPAWSPDGTKLAYVSFESKKPVVYVHD 226 (427)
T ss_pred EEEEECCCCCCceEeccCCC---CcccceEcCCCCEEEEEEccCCCcEEEEEE
Confidence 56666666654322211111 12356888855566555432 35688774
No 105
>PRK03629 tolB translocation protein TolB; Provisional
Probab=92.99 E-value=19 Score=40.53 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred eEEEccCCc-EEEE-e-CC--CeEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-E-E
Q psy4832 296 GLAIKADKT-MFIA-D-GT--NIRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-L-H 367 (770)
Q Consensus 296 gIavd~~G~-lYva-D-~~--~Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-l-y 367 (770)
.+++.|||. |+++ + .+ +|+.++.+ |.+..+..... .....+++| +|+ | |
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~----------------------~~~~~~wSP-DG~~I~f 303 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS----------------------NNTEPTWFP-DSQNLAY 303 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC----------------------CcCceEECC-CCCEEEE
Confidence 457888886 6654 3 22 28877765 45544432110 123567888 665 5 4
Q ss_pred EEeC---CEEEEEcCC-CcEEEE
Q psy4832 368 FIDD---RVIFKLTND-LKVKIV 386 (770)
Q Consensus 368 v~D~---~~I~~i~~~-G~v~~v 386 (770)
+++. ..|++++.+ |..+.+
T Consensus 304 ~s~~~g~~~Iy~~d~~~g~~~~l 326 (429)
T PRK03629 304 TSDQAGRPQVYKVNINGGAPQRI 326 (429)
T ss_pred EeCCCCCceEEEEECCCCCeEEe
Confidence 4442 378888865 344443
No 106
>TIGR03696 Rhs_assc_core RHS repeat-associated core domain. This model represents a conserved unique core sequence shared by large numbers of proteins. It is occasional in the Archaea Methanosarcina barkeri) but common in bacteria and eukaryotes. Most fall into two large classes. One class consists of long proteins in which two classes of repeats are abundant: an FG-GAP repeat (pfam01839) class, and an RHS repeat (pfam05593) or YD repeat (TIGR01643). This class includes secreted bacterial insecticidal toxins and intercellular signalling proteins such as the teneurins in animals. The other class consists of uncharacterized proteins shorter than 400 amino acids, where this core domain of about 75 amino acids tends to occur in the N-terminal half. Over twenty such proteins are found in Pseudomonas putida alone; little sequence similarity or repeat structure is found among these proteins outside the region modeled by this domain.
Probab=92.81 E-value=0.038 Score=45.65 Aligned_cols=27 Identities=26% Similarity=0.641 Sum_probs=23.8
Q ss_pred eCCCCceEEecCCceeeeeccCccccCCC
Q psy4832 742 RSPYGHIVYDSNPYIYLPIDFCGGLLDQE 770 (770)
Q Consensus 742 yd~~G~~~~~~~~~~~~p~~~~G~~~d~~ 770 (770)
|+|||+++..+. ..+|++|+|+++|+|
T Consensus 1 Y~pfG~~~~~~~--~~~~~~f~G~~~d~~ 27 (76)
T TIGR03696 1 YDPFGEVLSEAP--VDNPLRFTGQYYDAE 27 (76)
T ss_pred CCCCCcccccCc--ccCCCCCCCEeEhhh
Confidence 799999998655 778999999999975
No 107
>KOG0266|consensus
Probab=92.70 E-value=21 Score=40.45 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=84.9
Q ss_pred eEEEEcCCCCEEEEeC-c-eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC
Q psy4832 183 VALTSGPDGSLYVGDF-N-LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~-~-~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g 260 (770)
..+.+.++|...++-. . .|+.....+...............-..++++| ++...++-....+|+.++.. +..-
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~----~~~~ 237 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLK----DDGR 237 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeecc----CCCe
Confidence 3466788888755443 3 34433332211011111122344567899997 88888888888888777431 1112
Q ss_pred cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCC
Q psy4832 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSP 337 (770)
Q Consensus 261 ~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p 337 (770)
.+.++.|- ......++|.++|+++++-... ||.-+.. |+....+....
T Consensus 238 ~~~~l~gH----------------------~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs------- 288 (456)
T KOG0266|consen 238 NLKTLKGH----------------------STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS------- 288 (456)
T ss_pred EEEEecCC----------------------CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC-------
Confidence 33444432 2235789999999877764433 7776644 44433332211
Q ss_pred CccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEcCC
Q psy4832 338 FNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLTND 380 (770)
Q Consensus 338 ~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~~~ 380 (770)
..-+++++++ +++++++- .+.|+..+..
T Consensus 289 --------------~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 289 --------------DGISGLAFSP-DGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred --------------CceEEEEECC-CCCEEEEcCCCccEEEEECC
Confidence 1346789998 88776665 4677777744
No 108
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=92.42 E-value=2.2 Score=42.88 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=78.1
Q ss_pred ccCceEEEEcCCCCEEEEeCceEEEEcC--CCcE-----EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEec
Q psy4832 179 LLTPVALTSGPDGSLYVGDFNLVRRLTP--EGNV-----FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 179 l~~P~~la~~~dG~lyv~d~~~I~~i~~--~G~v-----~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~ 251 (770)
+..-..|+..|+|.||....+.+.+..+ ++.- .+.++ ......=..|+++| .|.||..+. +..++|...
T Consensus 33 w~~~~~i~~~P~g~lY~I~~~~lY~~~~~~~~~~~~~~~~~~Ig--~g~W~~F~~i~~d~-~G~LYaV~~-~G~lyR~~~ 108 (229)
T PF14517_consen 33 WNNFRDIAAGPNGRLYAIRNDGLYRGSPSSSGGNTWDSGSKQIG--DGGWNSFKFIFFDP-TGVLYAVTP-DGKLYRHPR 108 (229)
T ss_dssp -TT-SEEEE-TTS-EEEEETTEEEEES---STT--HHHH-EEEE---S-GGG-SEEEE-T-TS-EEEEET-T-EEEEES-
T ss_pred ccccceEEEcCCceEEEEECCceEEecCCccCcccccccCcccc--cCcccceeEEEecC-CccEEEecc-ccceeeccC
Confidence 5556778999999999999887777732 2211 12222 22233334899997 999997766 467777743
Q ss_pred cCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEE-CCCCc------EE
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVV-SPEGI------IH 323 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~i-d~~G~------i~ 323 (770)
-. ++...-..+.+... | ....+....|.++++|.||..+... +.+. .+++. -+
T Consensus 109 ~~-----~~~~~W~~~~~~~i--------G------~~GW~~f~~vfa~~~GvLY~i~~dg~~~~~~~p~~~~~~W~~~s 169 (229)
T PF14517_consen 109 PT-----NGSDNWIGGSGKKI--------G------GTGWNDFDAVFAGPNGVLYAITPDGRLYRRYRPDGGSDRWLSGS 169 (229)
T ss_dssp -------STT--HHH-HSEEE--------E-------SSGGGEEEEEE-TTS-EEEEETTE-EEEE---SSTT--HHHH-
T ss_pred CC-----ccCcchhhccceec--------c------cCCCccceEEEeCCCccEEEEcCCCceEEeCCCCCCCCcccccc
Confidence 11 11110001111110 0 1123456788899999999887665 4444 33321 12
Q ss_pred EeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcC
Q psy4832 324 TLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTN 379 (770)
Q Consensus 324 t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~ 379 (770)
.+++.. ....+.-|.+.| +|+||.++ ++.++|-.+
T Consensus 170 ~~v~~~--------------------gw~~~~~i~~~~-~g~L~~V~~~G~lyr~~~ 205 (229)
T PF14517_consen 170 GLVGGG--------------------GWDSFHFIFFSP-DGNLWAVKSNGKLYRGRP 205 (229)
T ss_dssp EEEESS--------------------SGGGEEEEEE-T-TS-EEEE-ETTEEEEES-
T ss_pred ceeccC--------------------CcccceEEeeCC-CCcEEEEecCCEEeccCC
Confidence 222211 233477889999 99999987 688888764
No 109
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.42 E-value=24 Score=40.31 Aligned_cols=160 Identities=17% Similarity=0.236 Sum_probs=79.3
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCC
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETN 279 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~ 279 (770)
...-+|.+|.++..+....... ..+-.-+ +|+|++... +++.++ |..|++....-.... .
T Consensus 129 ~~~~iD~~G~Vrw~~~~~~~~~---~~~~~l~-nG~ll~~~~--~~~~e~-------D~~G~v~~~~~l~~~-------~ 188 (477)
T PF05935_consen 129 YTYLIDNNGDVRWYLPLDSGSD---NSFKQLP-NGNLLIGSG--NRLYEI-------DLLGKVIWEYDLPGG-------Y 188 (477)
T ss_dssp EEEEEETTS-EEEEE-GGGT-----SSEEE-T-TS-EEEEEB--TEEEEE--------TT--EEEEEE--TT-------E
T ss_pred eEEEECCCccEEEEEccCcccc---ceeeEcC-CCCEEEecC--CceEEE-------cCCCCEEEeeecCCc-------c
Confidence 6777788888776653211111 0144443 788887766 788888 567775433211100 0
Q ss_pred cCCCcccccccccCcceEEEccCCcEEEEeC--------C------C-eEEECCCCcEEEeecCCCCCCCcC-----CCc
Q psy4832 280 CGDNGPALAAKLSHPKGLAIKADKTMFIADG--------T------N-IRVVSPEGIIHTLIGHHKHHNIWS-----PFN 339 (770)
Q Consensus 280 ~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~--------~------~-Ir~id~~G~i~t~~g~~~~~~~~~-----p~~ 339 (770)
...=+.+...++|++.+.-. . . |..+|++|.|....-....-..++ +.+
T Consensus 189 -----------~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~ 257 (477)
T PF05935_consen 189 -----------YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYP 257 (477)
T ss_dssp -----------E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--
T ss_pred -----------cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccccccccc
Confidence 11235777888888555332 1 1 888999998887653322110000 000
Q ss_pred cCCCcccccccccC--cceEEEeCCCCeEEEEeC--CEEEEEc-CCCcEEEEecCCC
Q psy4832 340 CHRSFPASTAQLQW--PTGLALSPLDDSLHFIDD--RVIFKLT-NDLKVKIVAGIPL 391 (770)
Q Consensus 340 ~~~~~~~~~~~l~~--P~gla~d~~~g~lyv~D~--~~I~~i~-~~G~v~~vaG~~~ 391 (770)
+. ..........| -++|.+++.+++|+|+-. +.|++|+ .++++..++|.+.
T Consensus 258 ~~-~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 258 YG-DISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp SS-SSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cc-ccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 00 01111122233 578999987788988883 6899999 8899999998654
No 110
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.32 E-value=6.9 Score=40.39 Aligned_cols=61 Identities=21% Similarity=0.404 Sum_probs=43.3
Q ss_pred CCCEEEEeC--ceEEEEcCC-CcEEEEeccC---------c---ccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF--NLVRRLTPE-GNVFTVLQLS---------A---TQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~---------~---~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.||---. ++|.+|||. |.|..++.+. . ....--+|||.+|..+.+||+--.=.++++|.
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~ 259 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVK 259 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEE
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEE
Confidence 788887665 699999975 9999877532 0 11234689999999999999987656777763
No 111
>KOG2055|consensus
Probab=91.78 E-value=23 Score=38.84 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=17.8
Q ss_pred ccccceecCCeeEEEEcCCC-cEEEE
Q psy4832 493 LLTSTARFTSISALSVSPDG-VVNVA 517 (770)
Q Consensus 493 ~~~~~~~l~~P~giav~~dG-~lyva 517 (770)
.+.....+..+..|+++|.| .+-+.
T Consensus 475 fP~~n~~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 475 FPTSNTKVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred CCCCCCcccceEEEEecCCCceEEee
Confidence 34456678899999999955 44444
No 112
>PRK05137 tolB translocation protein TolB; Provisional
Probab=91.55 E-value=28 Score=39.21 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=24.0
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
.|..++.+|.....+.... ..-...+++|.+..|+++.. +...|+.++
T Consensus 183 ~l~~~d~dg~~~~~lt~~~---~~v~~p~wSpDG~~lay~s~~~g~~~i~~~d 232 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGS---SLVLTPRFSPNRQEITYMSYANGRPRVYLLD 232 (435)
T ss_pred EEEEECCCCCCcEEEecCC---CCeEeeEECCCCCEEEEEEecCCCCEEEEEE
Confidence 4555555554433221111 12346778885445554432 345788774
No 113
>PRK04922 tolB translocation protein TolB; Provisional
Probab=91.36 E-value=29 Score=39.05 Aligned_cols=26 Identities=23% Similarity=0.096 Sum_probs=15.8
Q ss_pred eEEEEeCCCCcEEEEeCC--CcEEEEEe
Q psy4832 225 YYLALSPADGHLYISDAE--KHQILRVL 250 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~--~~~I~~i~ 250 (770)
...+++|.+..|+++... ..+|+.++
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~d 234 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQD 234 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEE
Confidence 456788855556665432 35687774
No 114
>KOG0266|consensus
Probab=91.35 E-value=30 Score=39.25 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=69.4
Q ss_pred cCceEEEEcCCCCEEEEeC--ceEEEEcC--CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCc
Q psy4832 180 LTPVALTSGPDGSLYVGDF--NLVRRLTP--EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESV 255 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~--~~I~~i~~--~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~ 255 (770)
..-..+++.|+|.+.++-. ..|+.++. ++....++. +-....+.++|+| .++++++-...+.|+..+.
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~---- 275 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDV---- 275 (456)
T ss_pred cceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEec----
Confidence 4457889999999776544 35666654 345555552 3345569999998 5599999888777776642
Q ss_pred cCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-Cc
Q psy4832 256 ADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GI 321 (770)
Q Consensus 256 ~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~ 321 (770)
..+... .+.+- -..-.++++.++|+++++-... |+..|.. |.
T Consensus 276 --~~~~~~~~l~~h----------------------s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 276 --RTGECVRKLKGH----------------------SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred --cCCeEEEeeecc----------------------CCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 122322 22221 1123578999999877665433 8888865 44
No 115
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.18 E-value=29 Score=38.84 Aligned_cols=64 Identities=17% Similarity=0.138 Sum_probs=36.0
Q ss_pred eEEEEcCCCC-E-EEEeC---ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeC--CCcEEEEEe
Q psy4832 183 VALTSGPDGS-L-YVGDF---NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDA--EKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~-l-yv~d~---~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~--~~~~I~~i~ 250 (770)
...++.|||+ | |+++. ..|.+++.+ |+...+... . ......+++|.+..|+++-. ++..|+.++
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~---g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-E---GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-C---CCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4557888886 4 44433 268887765 444443321 1 11235788885556765543 334788774
No 116
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.08 E-value=31 Score=38.99 Aligned_cols=68 Identities=19% Similarity=0.241 Sum_probs=36.7
Q ss_pred eEEEccCCc-EEEE-eC-CC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEE
Q psy4832 296 GLAIKADKT-MFIA-DG-TN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHF 368 (770)
Q Consensus 296 gIavd~~G~-lYva-D~-~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv 368 (770)
..++.++|. |+++ +. ++ |+.++.+ +.+..+.... ......+++| +|. |++
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~----------------------~~~~~p~wSp-DG~~I~f 322 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHR----------------------AIDTEPSWHP-DGKSLIF 322 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCC----------------------CCccceEECC-CCCEEEE
Confidence 357778876 6554 22 22 7777754 4554443211 0123456777 664 555
Q ss_pred Ee----CCEEEEEcCC-CcEEEE
Q psy4832 369 ID----DRVIFKLTND-LKVKIV 386 (770)
Q Consensus 369 ~D----~~~I~~i~~~-G~v~~v 386 (770)
+- ...|++++.+ |+.+.+
T Consensus 323 ~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 323 TSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred EECCCCCceEEEEECCCCCEEEE
Confidence 43 2468888854 555444
No 117
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.83 E-value=30 Score=38.37 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=35.3
Q ss_pred EEEEcCCCC-EEEEeC----ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC--CcEEEEEe
Q psy4832 184 ALTSGPDGS-LYVGDF----NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE--KHQILRVL 250 (770)
Q Consensus 184 ~la~~~dG~-lyv~d~----~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~--~~~I~~i~ 250 (770)
..++.|||. |+++.. ..|+.++.. |+...+.... .....++++|.+..|+++... +..|+.++
T Consensus 194 ~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 194 SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 345778886 333332 368788754 5444443211 123457889855567776443 34687774
No 118
>KOG0772|consensus
Probab=90.78 E-value=31 Score=38.45 Aligned_cols=214 Identities=14% Similarity=0.099 Sum_probs=106.4
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccC
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKAD 302 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~ 302 (770)
-...++++| .|.-+++-.-...|..++ -.|--..+--... ...+.-+.-+.+.+.+.
T Consensus 169 ~Vsal~~Dp-~GaR~~sGs~Dy~v~~wD-------f~gMdas~~~fr~---------------l~P~E~h~i~sl~ys~T 225 (641)
T KOG0772|consen 169 IVSALAVDP-SGARFVSGSLDYTVKFWD-------FQGMDASMRSFRQ---------------LQPCETHQINSLQYSVT 225 (641)
T ss_pred EEEEeeecC-CCceeeeccccceEEEEe-------cccccccchhhhc---------------cCcccccccceeeecCC
Confidence 356789997 777777777666776663 2221100000000 00011123456777777
Q ss_pred CcEEEEeCCC--eEEECCCCc-EEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--C--CEEE
Q psy4832 303 KTMFIADGTN--IRVVSPEGI-IHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--D--RVIF 375 (770)
Q Consensus 303 G~lYvaD~~~--Ir~id~~G~-i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~--~~I~ 375 (770)
|+.+++-+++ ++.+|.+|. +..+. .|..- ...+..+..+...-+.-++.|.+...|++- . -|||
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~-KGDQY--------I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiW 296 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFS-KGDQY--------IRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIW 296 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeee-ccchh--------hhhhhccCCceeeeeccccccCcccceEEecCCCcEEEE
Confidence 8755554444 888999994 33322 21110 111222333344455666777555666664 2 3555
Q ss_pred EEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeE
Q psy4832 376 KLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNAL 454 (770)
Q Consensus 376 ~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i 454 (770)
-++.. -+..++.-.+... .-..|..-+++++|.++.|--..+.| ++
T Consensus 297 dv~~~k~q~qVik~k~~~g--------------------------------~Rv~~tsC~~nrdg~~iAagc~DGSI-Q~ 343 (641)
T KOG0772|consen 297 DVNNTKSQLQVIKTKPAGG--------------------------------KRVPVTSCAWNRDGKLIAAGCLDGSI-QI 343 (641)
T ss_pred ecCCchhheeEEeeccCCC--------------------------------cccCceeeecCCCcchhhhcccCCce-ee
Confidence 54422 2333443222111 01236788899999986665555543 22
Q ss_pred EEEcCCCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceec--CCeeEEEEcCCCcEEEEcCC--CceEEeeec
Q psy4832 455 RVIDSTGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARF--TSISALSVSPDGVVNVADQG--SLHILALQH 529 (770)
Q Consensus 455 ~~i~~~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l--~~P~giav~~dG~lyvaD~~--~~~I~~i~~ 529 (770)
+..-.-+. ..... ..|.+ ...++|++++||+.+.+-.+ ..++|-++.
T Consensus 344 W~~~~~~v~p~~~v----------------------------k~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKV----------------------------KDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred eecCCcccccceEe----------------------------eeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 22110000 00001 11112 25788999999998887554 445666644
No 119
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=90.71 E-value=30 Score=38.16 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=66.6
Q ss_pred CC-cEEEEcCCCceEEeeecCCc-----ccCCCCcEEEeCCCCCcEEEEecCCceEEEEcCCCCCcEEEEEecCCCCCCc
Q psy4832 511 DG-VVNVADQGSLHILALQHYLP-----THDEHGEFKIPYPATNEIYVFNRYGQHITTRDMTSGKPRYSFLYSKNTSFGK 584 (770)
Q Consensus 511 dG-~lyvaD~~~~~I~~i~~~~~-----~~~~~g~~~i~~~~~~e~yvfd~~G~~~~t~d~~tg~~~y~~~Yd~~~~~G~ 584 (770)
|| .|=|-|...+.+.++...+. ..+..|.+.+...+..|+|+.|-+...+..+|.+-.+....|.+..+ ++
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~n---sr 456 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPN---SR 456 (668)
T ss_pred CCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCC---ce
Confidence 55 56666666666666666543 12345566666677778888876655567777777777778888777 77
Q ss_pred eEEEECCCCCE---EEEEEcCC-CcceEeccCCcccc
Q psy4832 585 LSTITDASGNK---INFLRDYS-NVAQLQWPTGLALS 617 (770)
Q Consensus 585 L~~vtd~~G~~---~~~~~d~~-~~~~~~~p~G~~~~ 617 (770)
..+-.=++|-. ++++.-.+ +...+++|++..+.
T Consensus 457 ~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~Dfs 493 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFS 493 (668)
T ss_pred eEEEecCcceeeeeEEEEecCCCeEEEecCCcccccC
Confidence 76666666653 33333233 55667888876544
No 120
>PRK01742 tolB translocation protein TolB; Provisional
Probab=90.29 E-value=36 Score=38.27 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=34.5
Q ss_pred eEEEccCCc-EEEE-e-CCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe-EEE
Q psy4832 296 GLAIKADKT-MFIA-D-GTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHF 368 (770)
Q Consensus 296 gIavd~~G~-lYva-D-~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv 368 (770)
.+++.|+|. |+++ + .++ |+.++.+ +.+..+.+... .....+++| +|. |++
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~----------------------~~~~~~wSp-DG~~i~f 308 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAG----------------------NNTEPSWSP-DGQSILF 308 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCC----------------------CcCCEEECC-CCCEEEE
Confidence 467888886 5554 2 222 6777754 45544432210 123567888 775 555
Q ss_pred E-e---CCEEEEEcCCC
Q psy4832 369 I-D---DRVIFKLTNDL 381 (770)
Q Consensus 369 ~-D---~~~I~~i~~~G 381 (770)
+ + .-+|+.++.++
T Consensus 309 ~s~~~g~~~I~~~~~~~ 325 (429)
T PRK01742 309 TSDRSGSPQVYRMSASG 325 (429)
T ss_pred EECCCCCceEEEEECCC
Confidence 4 3 23677777554
No 121
>PRK02939 lipoprotein; Reviewed
Probab=90.23 E-value=22 Score=35.80 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=45.2
Q ss_pred EEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEE--EEEccCCc----EeEEE-ecC-----cEEE
Q psy4832 650 VTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLIS--LVYDERGF----LIFAQ-MFR-----HKYY 717 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~--~~yd~~G~----l~~~~-~~~-----~~~~ 717 (770)
+.|+||+.|=++......- ..+|+|+..+.|...+ .+.++.+.+ ..||..++ .+++. ..+ ....
T Consensus 123 l~~~~nd~GfI~~~~~~~~-~~~Y~Yd~~g~P~~~t---~~~~~kv~sv~~~~~~d~~K~lD~t~~~~~~~~~i~~vk~~ 198 (236)
T PRK02939 123 VSWETDDNGFVIKASGKEM-QVEYRYDDEGYPLGKT---TKSNDKTLSVSATPSADPRKKLDYTAVTTLNNQQVGNVKQS 198 (236)
T ss_pred EEEEECCCceEEEeecCCC-ceEEEecCCCCceeeE---EecCCeEEEEEEecCCCCCCCcceEEEEEECCEEEEEEeee
Confidence 3377777666655444333 2467777766664333 233443332 34553322 12222 222 2334
Q ss_pred EEeCCCCCeEE----EEcCCCCEEEEEEeC
Q psy4832 718 IATDQCGTPVM----VFNQYGETVREIMRS 743 (770)
Q Consensus 718 ~~~d~~G~~~~----~~d~~G~~v~~~~yd 743 (770)
..||..+.|+. +.|++|+......|+
T Consensus 199 C~YD~~~np~~C~~l~~~~~g~~~~~~~~t 228 (236)
T PRK02939 199 CEYDSHANPVDCQLLIVDESVKPAVERTYT 228 (236)
T ss_pred EecCCCCCceeeEEEEECCCCcceeEEEee
Confidence 45677777764 566777665554443
No 122
>KOG1274|consensus
Probab=90.07 E-value=49 Score=39.55 Aligned_cols=194 Identities=15% Similarity=0.124 Sum_probs=100.5
Q ss_pred cCCCeEEECCCccEEecccCCCeEEEEeccCc-cCC-ccCCCCCcccccccccCceEEEEcCCCCEEEEe--CceEEEEc
Q psy4832 130 FHEGILQKGDGSSLHLKHEFPRTVSVVMGTGL-QRP-LVCKDCDGVARDARLLTPVALTSGPDGSLYVGD--FNLVRRLT 205 (770)
Q Consensus 130 ~~~gil~~~dG~~~~~~~~~~~~i~~v~g~G~-~~~-~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d--~~~I~~i~ 205 (770)
--..|+++.+|+++++.. .++.|.++-.+-. .-| ..|. .| ..-.+++... +.|++- .+.|.+..
T Consensus 15 G~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~--~g-------~~v~~ia~~s--~~f~~~s~~~tv~~y~ 82 (933)
T KOG1274|consen 15 GLTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDI--SG-------ELVSSIACYS--NHFLTGSEQNTVLRYK 82 (933)
T ss_pred ceEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhc--cC-------ceeEEEeecc--cceEEeeccceEEEee
Confidence 356789999999998888 7777777765333 111 0000 00 1123445443 334432 36676664
Q ss_pred -CCCcEEEEeccCcccccce-eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCC
Q psy4832 206 -PEGNVFTVLQLSATQVSYQ-YYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDN 283 (770)
Q Consensus 206 -~~G~v~~~~~~~~~~~~~p-~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~ 283 (770)
+++..-+++ .+|.-| ..++|+ .+|...++-...-.|..++.. ......++.|--.
T Consensus 83 fps~~~~~iL----~Rftlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~-----D~s~~~~lrgh~a------------- 139 (933)
T KOG1274|consen 83 FPSGEEDTIL----ARFTLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLD-----DSSQEKVLRGHDA------------- 139 (933)
T ss_pred CCCCCcccee----eeeeccceEEEEe-cCCcEEEeecCceeEEEEecc-----ccchheeecccCC-------------
Confidence 455544443 234444 467888 477777776665555555421 1222222222100
Q ss_pred cccccccccCcceEEEccCCcEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCc-ceEEE
Q psy4832 284 GPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWP-TGLAL 359 (770)
Q Consensus 284 g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P-~gla~ 359 (770)
.-.+|.++|+|++..+-..+ ++.++ .++.+...+..-. +|.+ ..+..+ .-+++
T Consensus 140 ---------pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~--------k~n~------~~~s~i~~~~aW 196 (933)
T KOG1274|consen 140 ---------PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD--------KDNE------FILSRICTRLAW 196 (933)
T ss_pred ---------ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC--------cccc------ccccceeeeeee
Confidence 12478888888865544333 66666 3454443332211 1111 111122 34788
Q ss_pred eCCCCeEEEEe-CCEEEEEcCCC
Q psy4832 360 SPLDDSLHFID-DRVIFKLTNDL 381 (770)
Q Consensus 360 d~~~g~lyv~D-~~~I~~i~~~G 381 (770)
.|..|.+-+.- .+.|..++.+|
T Consensus 197 ~Pk~g~la~~~~d~~Vkvy~r~~ 219 (933)
T KOG1274|consen 197 HPKGGTLAVPPVDNTVKVYSRKG 219 (933)
T ss_pred cCCCCeEEeeccCCeEEEEccCC
Confidence 88557766654 57777777554
No 123
>KOG0279|consensus
Probab=90.02 E-value=25 Score=36.18 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=82.0
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
.++++.+||+..++-. ..+|..|.. |+.+..|. ..-....+++|++ ++.-.|+-+..+.|.-.+..
T Consensus 67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~------- 135 (315)
T KOG0279|consen 67 SDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTL------- 135 (315)
T ss_pred cceEEccCCceEEeccccceEEEEEecCCcEEEEEE---ecCCceEEEEecC-CCceeecCCCcceeeeeeec-------
Confidence 4567778888887655 356666755 45555552 2334567899997 77777787777777666322
Q ss_pred CcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCC-cEEEEeCCC---eEEECCCC-c-EEEeecCCCCC
Q psy4832 260 INWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADK-TMFIADGTN---IRVVSPEG-I-IHTLIGHHKHH 332 (770)
Q Consensus 260 g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G-~lYvaD~~~---Ir~id~~G-~-i~t~~g~~~~~ 332 (770)
|... ++...++ -..-.-+.|.|+. +.+|..... ++.-|.++ + -.++.|...
T Consensus 136 g~ck~t~~~~~~--------------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-- 193 (315)
T KOG0279|consen 136 GVCKYTIHEDSH--------------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-- 193 (315)
T ss_pred ccEEEEEecCCC--------------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc--
Confidence 2211 1111110 1134567788764 556555443 66666655 2 233344321
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT 378 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~ 378 (770)
.-+-++++| ||.|...- .+.++-.+
T Consensus 194 --------------------~v~t~~vSp-DGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 194 --------------------YVNTVTVSP-DGSLCASGGKDGEAMLWD 220 (315)
T ss_pred --------------------cEEEEEECC-CCCEEecCCCCceEEEEE
Confidence 345789999 99988775 34444444
No 124
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.01 E-value=35 Score=37.78 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCcEEEEeCCC-eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEc
Q psy4832 302 DKTMFIADGTN-IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLT 378 (770)
Q Consensus 302 ~G~lYvaD~~~-Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~ 378 (770)
++.||++.... +..+|. +|++.--. .+..+..++++ ++.||+.+ ++.|+.++
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~-----------------------~~~~~~~~~~~--~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKR-----------------------EYGSVNDFAVD--GGRIYLVDQNDRVYALD 310 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEee-----------------------cCCCccCcEEE--CCEEEEEcCCCeEEEEE
Confidence 67888877544 777774 46442211 01122334555 78999987 68899998
Q ss_pred C-CCcE
Q psy4832 379 N-DLKV 383 (770)
Q Consensus 379 ~-~G~v 383 (770)
. +|++
T Consensus 311 ~~tG~~ 316 (394)
T PRK11138 311 TRGGVE 316 (394)
T ss_pred CCCCcE
Confidence 4 5654
No 125
>KOG0282|consensus
Probab=89.57 E-value=9.6 Score=41.91 Aligned_cols=192 Identities=16% Similarity=0.203 Sum_probs=110.7
Q ss_pred eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc
Q psy4832 225 YYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT 304 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~ 304 (770)
..+-+-|..+.|+.+-.-.++|..++.- +.-+-+.++.|-.. .-+.+++..+|.
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy----~~~~~lrtf~gH~k----------------------~Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVY----DDRRCLRTFKGHRK----------------------PVRDASFNNCGT 271 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEe----cCcceehhhhcchh----------------------hhhhhhccccCC
Confidence 4455667788899888888887766421 21122223332111 124677777787
Q ss_pred EEEEeCCC--eEEECC-CCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCC-eEEEEe--CCEEEEEc
Q psy4832 305 MFIADGTN--IRVVSP-EGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDD-SLHFID--DRVIFKLT 378 (770)
Q Consensus 305 lYvaD~~~--Ir~id~-~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g-~lyv~D--~~~I~~i~ 378 (770)
=|.+-+.. |+..|. .|++..-+-.+ .-|+.+.+.| ++ ++|++- +.+|+.+|
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~----------------------~~~~cvkf~p-d~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFHLD----------------------KVPTCVKFHP-DNQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEecC----------------------CCceeeecCC-CCCcEEEEecCCCcEEEEe
Confidence 66665544 666664 36655433222 1377889999 55 888887 57888887
Q ss_pred C-CCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCceeeEEEE
Q psy4832 379 N-DLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKVNALRVI 457 (770)
Q Consensus 379 ~-~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i 457 (770)
. .|+|..- ....|.....|.|-++|.=||+.++...+ +|.-.
T Consensus 329 iRs~kvvqe------------------------------------Yd~hLg~i~~i~F~~~g~rFissSDdks~-riWe~ 371 (503)
T KOG0282|consen 329 IRSGKVVQE------------------------------------YDRHLGAILDITFVDEGRRFISSSDDKSV-RIWEN 371 (503)
T ss_pred ccchHHHHH------------------------------------HHhhhhheeeeEEccCCceEeeeccCccE-EEEEc
Confidence 3 3442110 11224456788888899988888776643 33333
Q ss_pred cCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 458 DSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 458 ~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
...--+..++-.. .. .--.|++.|+|..+++-...++|..+....
T Consensus 372 ~~~v~ik~i~~~~----------------------------~h-smP~~~~~P~~~~~~aQs~dN~i~ifs~~~ 416 (503)
T KOG0282|consen 372 RIPVPIKNIADPE----------------------------MH-TMPCLTLHPNGKWFAAQSMDNYIAIFSTVP 416 (503)
T ss_pred CCCccchhhcchh----------------------------hc-cCcceecCCCCCeehhhccCceEEEEeccc
Confidence 2221122222111 11 112477788888888888777887775443
No 126
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.37 E-value=23 Score=40.38 Aligned_cols=138 Identities=19% Similarity=0.275 Sum_probs=69.3
Q ss_pred EEEcCCCCEEEEeCceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCC-------------CcEEEEEec
Q psy4832 185 LTSGPDGSLYVGDFNLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAE-------------KHQILRVLS 251 (770)
Q Consensus 185 la~~~dG~lyv~d~~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~-------------~~~I~~i~~ 251 (770)
+-..++|.|++...++++.++..|++......+......=..+...| +|++++.... ...|..+
T Consensus 153 ~~~l~nG~ll~~~~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev-- 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSGNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVEV-- 229 (477)
T ss_dssp EEE-TTS-EEEEEBTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEEE--
T ss_pred eeEcCCCCEEEecCCceEEEcCCCCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEEE--
Confidence 55678999999998999999999998876654332112235677776 5655543331 2456666
Q ss_pred cCCccCCCCcEEEEECCCccccCCCC-----CCcCC-CcccccccccCcceEEEcc-CCcEEEEeCCC--eEEEC-CCCc
Q psy4832 252 LESVADPSINWEVAVGSGERCIPGDE-----TNCGD-NGPALAAKLSHPKGLAIKA-DKTMFIADGTN--IRVVS-PEGI 321 (770)
Q Consensus 252 ~~~~~~~~g~~~~vaG~g~~~~p~~~-----~~~g~-~g~~~~a~l~~P~gIavd~-~G~lYvaD~~~--Ir~id-~~G~ 321 (770)
+++|++.-.--....-.|... ...++ .+......-.+-++|..++ ++.|+++-... |.+|| .+++
T Consensus 230 -----d~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 230 -----DPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp ------TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred -----CCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 456665544322222111110 00000 0001112223567899998 66677776544 99999 7899
Q ss_pred EEEeecCCC
Q psy4832 322 IHTLIGHHK 330 (770)
Q Consensus 322 i~t~~g~~~ 330 (770)
|.-++|...
T Consensus 305 i~Wilg~~~ 313 (477)
T PF05935_consen 305 IKWILGPPG 313 (477)
T ss_dssp EEEEES-ST
T ss_pred EEEEeCCCC
Confidence 998888754
No 127
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.37 E-value=16 Score=41.25 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=62.8
Q ss_pred eEEEccCCcEEEEeCCC-eEEECCCC--cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeCC
Q psy4832 296 GLAIKADKTMFIADGTN-IRVVSPEG--IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDDR 372 (770)
Q Consensus 296 gIavd~~G~lYvaD~~~-Ir~id~~G--~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~~ 372 (770)
-..+|++|.+|+....+ +.+.+..- -+.... .+.+ ...-..|.-+| +++|++-..+
T Consensus 380 ~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~---------------agl~-----ss~V~aived~-dnsLWIGTs~ 438 (671)
T COG3292 380 TTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDED---------------AGLP-----SSEVSAIVEDP-DNSLWIGTSG 438 (671)
T ss_pred hhhhccCCcEEEEecccchhhhccCCcccccccc---------------cCCc-----ccceeeeeecC-CCCEEEeccC
Confidence 34456688899988775 65555332 111100 0000 11223566678 8889998877
Q ss_pred EEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 373 VIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 373 ~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
-|.+.++. +++....-...+.. . -.....|+++++|.|+++-..+
T Consensus 439 Glvk~~pe~~~v~n~ln~~~~~l---~----------------------------~s~~~~lg~~~~g~Lw~a~g~g--- 484 (671)
T COG3292 439 GLVKRDPESGRVLNLLNPGSHGL---D----------------------------GSRVEQLGLGPDGRLWLAAGSG--- 484 (671)
T ss_pred CeEecCccccchhcccccccCcC---C----------------------------cchhhhhccCCCCceEEEecce---
Confidence 77777754 44443321111110 0 0124668889999999998754
Q ss_pred eeEEEEcCCCcEEE
Q psy4832 452 NALRVIDSTGRMFD 465 (770)
Q Consensus 452 ~~i~~i~~~G~i~~ 465 (770)
|...++.+++..
T Consensus 485 --va~~~sq~~~~~ 496 (671)
T COG3292 485 --VAAWESQRRMFV 496 (671)
T ss_pred --eeeeccccceec
Confidence 455555555543
No 128
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=89.26 E-value=23 Score=38.76 Aligned_cols=70 Identities=24% Similarity=0.305 Sum_probs=44.2
Q ss_pred ccccCceEEEEc--C-CCCEEE--EeC-c--eEEEEc--CCCcEE----EEeccCcccccceeEEEEeCCCCcEEEEeCC
Q psy4832 177 ARLLTPVALTSG--P-DGSLYV--GDF-N--LVRRLT--PEGNVF----TVLQLSATQVSYQYYLALSPADGHLYISDAE 242 (770)
Q Consensus 177 ~~l~~P~~la~~--~-dG~lyv--~d~-~--~I~~i~--~~G~v~----~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~ 242 (770)
..+..|.++|.- + +|.+|+ .+. + ..+++. .+|.+. +-|.. ...+.++++|...+.||+++..
T Consensus 153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe~g~LYvgEE~ 228 (381)
T PF02333_consen 153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDETGRLYVGEED 228 (381)
T ss_dssp -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETTTTEEEEEETT
T ss_pred cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecccCCEEEecCc
Confidence 456678999973 3 677765 333 2 233333 456543 33332 2468999999999999999976
Q ss_pred CcEEEEEec
Q psy4832 243 KHQILRVLS 251 (770)
Q Consensus 243 ~~~I~~i~~ 251 (770)
.-||++..
T Consensus 229 -~GIW~y~A 236 (381)
T PF02333_consen 229 -VGIWRYDA 236 (381)
T ss_dssp -TEEEEEES
T ss_pred -cEEEEEec
Confidence 68999975
No 129
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=88.60 E-value=38 Score=36.34 Aligned_cols=111 Identities=19% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCEEEEeC------ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcE---------EEEEeccCC
Q psy4832 191 GSLYVGDF------NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQ---------ILRVLSLES 254 (770)
Q Consensus 191 G~lyv~d~------~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~---------I~~i~~~~~ 254 (770)
..+||.|. .++..+|.+ +++.-.+ .+.+.. .++++|....+|++++--.| |..++..
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi---~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-- 75 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMI---DTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-- 75 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEE---EEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT--
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEe---ecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecC--
Confidence 35888886 388888865 5554333 233332 37788888889998764222 2223211
Q ss_pred ccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCc-EEEEeCCC---eEEECCC-CcEEEee
Q psy4832 255 VADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKT-MFIADGTN---IRVVSPE-GIIHTLI 326 (770)
Q Consensus 255 ~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~-lYvaD~~~---Ir~id~~-G~i~t~~ 326 (770)
+..-..++..-.+. ....+..+.-+++..+|. +||....- |-+||.. +++..-+
T Consensus 76 --TL~~~~EI~iP~k~----------------R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 76 --TLSPTGEIEIPPKP----------------RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp --TTEEEEEEEETTS-----------------B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE
T ss_pred --cCcccceEecCCcc----------------hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee
Confidence 11111222221100 012245677888887776 88876543 8888854 4555444
No 130
>KOG2106|consensus
Probab=88.48 E-value=46 Score=37.11 Aligned_cols=69 Identities=22% Similarity=0.418 Sum_probs=48.3
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS 509 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~ 509 (770)
.+.+.++|+|..+..-+.++.| -|.+++.+|+....+|.-.. .-...|-.+
T Consensus 450 ls~v~ysp~G~~lAvgs~d~~i-yiy~Vs~~g~~y~r~~k~~g----------------------------s~ithLDwS 500 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDNHI-YIYRVSANGRKYSRVGKCSG----------------------------SPITHLDWS 500 (626)
T ss_pred eEEEEEcCCCCEEEEecCCCeE-EEEEECCCCcEEEEeeeecC----------------------------ceeEEeeec
Confidence 3678899999866655555555 57788999988777765421 124568888
Q ss_pred CCCcEEEEcCCCceEEee
Q psy4832 510 PDGVVNVADQGSLHILAL 527 (770)
Q Consensus 510 ~dG~lyvaD~~~~~I~~i 527 (770)
+|+..+++.++...|.--
T Consensus 501 ~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYEILYW 518 (626)
T ss_pred CCCceEEeccCceEEEEE
Confidence 898888888777666433
No 131
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=88.03 E-value=48 Score=36.77 Aligned_cols=26 Identities=23% Similarity=0.077 Sum_probs=15.8
Q ss_pred eEEEEeCCCCcEEEEeCCC--cEEEEEe
Q psy4832 225 YYLALSPADGHLYISDAEK--HQILRVL 250 (770)
Q Consensus 225 ~~lav~p~~g~lyvsd~~~--~~I~~i~ 250 (770)
...+++|.+..|+++.... ..|+.++
T Consensus 193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d 220 (417)
T TIGR02800 193 LSPAWSPDGQKLAYVSFESGKPEIYVQD 220 (417)
T ss_pred ecccCCCCCCEEEEEEcCCCCcEEEEEE
Confidence 3456887555666665433 5677774
No 132
>KOG0645|consensus
Probab=87.87 E-value=35 Score=35.05 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=87.8
Q ss_pred CceEEEEcCC-CCEEEEeC--ceEEEEcCCC-c-EE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 181 TPVALTSGPD-GSLYVGDF--NLVRRLTPEG-N-VF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 181 ~P~~la~~~d-G~lyv~d~--~~I~~i~~~G-~-v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
+-+.+|+.|- |.|+-+-. ..||..+..+ . .. +++. ..--..-..+|.+| .|++..+-+....+....
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~--- 89 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVAWSP-HGRYLASASFDATVVIWK--- 89 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc--ccchheeeeeeecC-CCcEEEEeeccceEEEee---
Confidence 5688899986 88666544 3677766552 2 22 2331 22334567899998 666555544444444443
Q ss_pred CccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC----eEEECCCCcEEEeecCC
Q psy4832 254 SVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN----IRVVSPEGIIHTLIGHH 329 (770)
Q Consensus 254 ~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~----Ir~id~~G~i~t~~g~~ 329 (770)
+.++.++.++-- +..-+.-+.+|+.++|++.-+.+.. |+.++.++.+..++=-
T Consensus 90 ---k~~~efecv~~l-------------------EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL- 146 (312)
T KOG0645|consen 90 ---KEDGEFECVATL-------------------EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL- 146 (312)
T ss_pred ---cCCCceeEEeee-------------------eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee-
Confidence 345555554421 1223456799999999877666544 7888877766554311
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT 378 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~ 378 (770)
+...+--..+.+.| ...|.++- .+.|..+.
T Consensus 147 ------------------~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~ 178 (312)
T KOG0645|consen 147 ------------------QEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYR 178 (312)
T ss_pred ------------------ccccccccEEEEcC-CcceeEEeccCCeEEEEe
Confidence 11233345788888 77777765 34444443
No 133
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.82 E-value=47 Score=36.41 Aligned_cols=55 Identities=16% Similarity=0.299 Sum_probs=36.0
Q ss_pred CCCEEEEeC-ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF-NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
++.||+++. +.|..++ .+|++......... + ...++++ ++.+|+... ++.++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-~--~~~p~v~--~~~v~v~~~-~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-L--SGGVGAD--GGLVFVGTE-KGEVIALD 121 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-c--ccceEEc--CCEEEEEcC-CCEEEEEE
Confidence 678999877 4899998 57887755433221 1 1234554 678888764 46788885
No 134
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=87.79 E-value=41 Score=35.75 Aligned_cols=127 Identities=16% Similarity=0.191 Sum_probs=73.6
Q ss_pred ccccCceEEEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccC--------cccccceeEEEEe---CCCCcEEEEeC-
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLS--------ATQVSYQYYLALS---PADGHLYISDA- 241 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~--------~~~~~~p~~lav~---p~~g~lyvsd~- 241 (770)
--.....+|..+++|+++|+-. +.|.+|+ .+|++...++.. ...+.+.....+. +.++.|-+-|.
T Consensus 141 ~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 141 WDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred CCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3445567888889999999877 4899999 679999887532 1225555555554 23555555554
Q ss_pred ---------CCcEEEEEeccCCccCCCCc-EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCC
Q psy4832 242 ---------EKHQILRVLSLESVADPSIN-WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGT 311 (770)
Q Consensus 242 ---------~~~~I~~i~~~~~~~~~~g~-~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~ 311 (770)
...+|+.++ +... ++.+...-.. ...-.+. ..-.+-.-++|+++|..+.
T Consensus 221 ~~~~~~~~~s~~~v~~ld-------~~~~~~~~~~~~~~~---~~~~~s~-----------~~G~~Q~L~nGn~li~~g~ 279 (299)
T PF14269_consen 221 NSDFNGTEPSRGLVLELD-------PETMTVTLVREYSDH---PDGFYSP-----------SQGSAQRLPNGNVLIGWGN 279 (299)
T ss_pred CCCCCCCcCCCceEEEEE-------CCCCEEEEEEEeecC---CCccccc-----------CCCcceECCCCCEEEecCC
Confidence 335666663 3322 2222211000 0000000 1112334568999999877
Q ss_pred C--eEEECCCCcEEE
Q psy4832 312 N--IRVVSPEGIIHT 324 (770)
Q Consensus 312 ~--Ir~id~~G~i~t 324 (770)
. +..++++|++.-
T Consensus 280 ~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 280 NGRISEFTPDGEVVW 294 (299)
T ss_pred CceEEEECCCCCEEE
Confidence 6 888999997753
No 135
>KOG0279|consensus
Probab=87.36 E-value=38 Score=34.93 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=100.8
Q ss_pred ceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEE-EECCCccccCCCCCCcCCCcccccccccCcceEEEcc
Q psy4832 223 YQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV-AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA 301 (770)
Q Consensus 223 ~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~-vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~ 301 (770)
....+++.+.+-.+|++-.....|...+.... ...-|++.. +-| .=..-.++++.+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-d~~~G~~~r~~~G----------------------HsH~v~dv~~s~ 73 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSD-DIKYGVPVRRLTG----------------------HSHFVSDVVLSS 73 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccC-ccccCceeeeeec----------------------cceEecceEEcc
Confidence 34566776666677777666666655533211 011122211 111 112356888999
Q ss_pred CCcEEEEeCCC--eEEECCCC--cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEeC--CEEE
Q psy4832 302 DKTMFIADGTN--IRVVSPEG--IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFIDD--RVIF 375 (770)
Q Consensus 302 ~G~lYvaD~~~--Ir~id~~G--~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D~--~~I~ 375 (770)
+|+..++-+.. +|.-|..+ ....+.|... --.+++|++ ++.-.|+-+ ..|.
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~----------------------dVlsva~s~-dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTK----------------------DVLSVAFST-DNRQIVSGSRDKTIK 130 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCC----------------------ceEEEEecC-CCceeecCCCcceee
Confidence 99988876543 77777553 2333444432 135789998 777777652 4454
Q ss_pred EEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCC-CEEEEeCCCCceeeE
Q psy4832 376 KLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTG-DLYIADIDARKVNAL 454 (770)
Q Consensus 376 ~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G-~lyVaD~~~~ri~~i 454 (770)
..+.-|....-.+...+ -...+.+.|.|+. +.+|+.....+. +
T Consensus 131 lwnt~g~ck~t~~~~~~----------------------------------~~WVscvrfsP~~~~p~Ivs~s~Dkt--v 174 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSH----------------------------------REWVSCVRFSPNESNPIIVSASWDKT--V 174 (315)
T ss_pred eeeecccEEEEEecCCC----------------------------------cCcEEEEEEcCCCCCcEEEEccCCce--E
Confidence 44433332222211110 1346788899975 666666665543 4
Q ss_pred EEEcCCCc-E-EEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCce
Q psy4832 455 RVIDSTGR-M-FDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSLH 523 (770)
Q Consensus 455 ~~i~~~G~-i-~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~~ 523 (770)
+.-+.++- + ..+.|. -...+.++|+|||.+..+-...+.
T Consensus 175 KvWnl~~~~l~~~~~gh------------------------------~~~v~t~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIGH------------------------------SGYVNTVTVSPDGSLCASGGKDGE 215 (315)
T ss_pred EEEccCCcchhhccccc------------------------------cccEEEEEECCCCCEEecCCCCce
Confidence 44343321 1 122221 123557999999999887544443
No 136
>PRK00178 tolB translocation protein TolB; Provisional
Probab=86.92 E-value=57 Score=36.48 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=25.0
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEE-EeC-CCcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYI-SDA-EKHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyv-sd~-~~~~I~~i~ 250 (770)
+|..++.+|.-...+.... ......+++|.+..|++ ++. .+.+|+.++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~---~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~ 229 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSR---EPILSPRWSPDGKRIAYVSFEQKRPRIFVQN 229 (430)
T ss_pred EEEEECCCCCCceEEecCC---CceeeeeECCCCCEEEEEEcCCCCCEEEEEE
Confidence 4666677765333221111 12356688885556644 433 235687774
No 137
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.54 E-value=57 Score=36.07 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=35.0
Q ss_pred CCCEEEEeC-ceEEEEcC-CCcEEEEeccCcc-cc-c------ceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 190 DGSLYVGDF-NLVRRLTP-EGNVFTVLQLSAT-QV-S------YQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~~-~G~v~~~~~~~~~-~~-~------~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.||+.+. +.|..++. +|++.-....... .+ . .-.+++++ ++.||+.+. ++.++.++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~v~v~~~-~g~l~ald 136 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVA--GGKVYIGSE-KGQVYALN 136 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEE--CCEEEEEcC-CCEEEEEE
Confidence 678888876 47888885 5887654432210 00 0 01235555 688998764 45777775
No 138
>PLN00181 protein SPA1-RELATED; Provisional
Probab=85.89 E-value=95 Score=38.02 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=37.3
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCC-----cEE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEG-----NVF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G-----~v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.+++++++|+++++-. ..|+.++.+. ... .+... ..-.....+++++..+.+.++-..++.|+.++
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL--ASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe--cccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 46789999999776433 4677665432 110 00000 01123457788765566666665667776664
No 139
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=85.67 E-value=1.9 Score=36.47 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=29.2
Q ss_pred cccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 218 ATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 218 ~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+..+..|+||+++|....|||++...+.|..++
T Consensus 50 a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~ 82 (86)
T PF01731_consen 50 ASGFSFANGIAISPDKKYLYVASSLAHSIHVYK 82 (86)
T ss_pred eccCCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence 457889999999998899999999999998774
No 140
>KOG0282|consensus
Probab=85.47 E-value=20 Score=39.60 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=36.0
Q ss_pred CcceEEEccCC-cEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 293 HPKGLAIKADK-TMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 293 ~P~gIavd~~G-~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
-|..+.+.|++ ++|++-..+ |+..| ..|.|..-.. ..|..-..|.|-+ +|.=||
T Consensus 301 ~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd---------------------~hLg~i~~i~F~~-~g~rFi 358 (503)
T KOG0282|consen 301 VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD---------------------RHLGAILDITFVD-EGRRFI 358 (503)
T ss_pred CceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH---------------------hhhhheeeeEEcc-CCceEe
Confidence 36677888877 799887655 88877 4565433222 2344556777776 777666
Q ss_pred Ee
Q psy4832 369 ID 370 (770)
Q Consensus 369 ~D 370 (770)
+.
T Consensus 359 ss 360 (503)
T KOG0282|consen 359 SS 360 (503)
T ss_pred ee
Confidence 54
No 141
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=85.33 E-value=1.5 Score=37.13 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.5
Q ss_pred ccCCeeEEEEcCCCC-EEEEeCCCCceee
Q psy4832 426 DLGSLTALAFSPTGD-LYIADIDARKVNA 453 (770)
Q Consensus 426 ~l~~P~giavd~~G~-lyVaD~~~~ri~~ 453 (770)
.|..|+||+++|+++ ||||+...+.|+.
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~~~~~I~v 80 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASSLAHSIHV 80 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEeccCCeEEE
Confidence 467899999999866 9999999887643
No 142
>KOG0272|consensus
Probab=84.22 E-value=69 Score=34.98 Aligned_cols=138 Identities=15% Similarity=0.231 Sum_probs=80.5
Q ss_pred cceEEEccCCcEEEEeCCC----eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 294 PKGLAIKADKTMFIADGTN----IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 294 P~gIavd~~G~lYvaD~~~----Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
-.+|++.++|.|..+-+-. |+-+-.-..|-.+.|. +....+++++| +|....+
T Consensus 306 v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH----------------------~k~I~~V~fsP-NGy~lAT 362 (459)
T KOG0272|consen 306 VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGH----------------------IKEILSVAFSP-NGYHLAT 362 (459)
T ss_pred cceeEecCCCceeeccCccchhheeecccCcEEEEeccc----------------------ccceeeEeECC-CceEEee
Confidence 4589999999987764432 3333233356666653 33456899999 9988777
Q ss_pred eC----CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcC-CCCEEEE
Q psy4832 370 DD----RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSP-TGDLYIA 444 (770)
Q Consensus 370 D~----~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~-~G~lyVa 444 (770)
-+ -+|+.+...-.+.++.+.. +-.+.|.++| .|...++
T Consensus 363 gs~Dnt~kVWDLR~r~~ly~ipAH~-------------------------------------nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 363 GSSDNTCKVWDLRMRSELYTIPAHS-------------------------------------NLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred cCCCCcEEEeeecccccceeccccc-------------------------------------chhhheEecccCCeEEEE
Confidence 52 3455554333333443211 2246788887 6777777
Q ss_pred eCCCCceeeEEEEcCCC--cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 445 DIDARKVNALRVIDSTG--RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 445 D~~~~ri~~i~~i~~~G--~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
-...+. ++..++.+ -+..++|-. ....++.+++||..+++-....
T Consensus 406 asyD~t---~kiWs~~~~~~~ksLaGHe------------------------------~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 406 ASYDNT---VKIWSTRTWSPLKSLAGHE------------------------------GKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred cccCcc---eeeecCCCcccchhhcCCc------------------------------cceEEEEeccCCceEEEeccCc
Confidence 766654 34333322 233444433 2356788888988777655544
Q ss_pred eE
Q psy4832 523 HI 524 (770)
Q Consensus 523 ~I 524 (770)
.|
T Consensus 453 T~ 454 (459)
T KOG0272|consen 453 TI 454 (459)
T ss_pred ee
Confidence 33
No 143
>KOG0283|consensus
Probab=84.03 E-value=52 Score=38.71 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=45.9
Q ss_pred cCcceEEEeCCCCeEEEEe--CCEEEEEc-CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 352 QWPTGLALSPLDDSLHFID--DRVIFKLT-NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 352 ~~P~gla~d~~~g~lyv~D--~~~I~~i~-~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
.+-+.|+|+|.|++.|++- .++|+..+ ++-+|.... .+ =.
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~----Dl---------------------------------~~ 452 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWN----DL---------------------------------RD 452 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeeh----hh---------------------------------hh
Confidence 3568999999888888887 46666555 444432221 01 02
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCc
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDSTGR 462 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~ 462 (770)
..+++++.|+|...|.-+.++. .+.++..|.
T Consensus 453 lITAvcy~PdGk~avIGt~~G~---C~fY~t~~l 483 (712)
T KOG0283|consen 453 LITAVCYSPDGKGAVIGTFNGY---CRFYDTEGL 483 (712)
T ss_pred hheeEEeccCCceEEEEEeccE---EEEEEccCC
Confidence 3588999999987777776663 455655553
No 144
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.69 E-value=65 Score=34.27 Aligned_cols=131 Identities=15% Similarity=0.245 Sum_probs=78.0
Q ss_pred ccCcceEEEccCCcEEEEeCCC--eEEEC-CCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEe----CCC
Q psy4832 291 LSHPKGLAIKADKTMFIADGTN--IRVVS-PEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALS----PLD 363 (770)
Q Consensus 291 l~~P~gIavd~~G~lYvaD~~~--Ir~id-~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d----~~~ 363 (770)
..+.++|..+++|++.|+-... |.+|+ .+|.|.-.+|.... +.|. + ....|.+-.+..+- . +
T Consensus 143 ~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~-~df~-------~--~~~~f~~QHdar~~~~~~~-~ 211 (299)
T PF14269_consen 143 YFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN-SDFT-------L--PATNFSWQHDARFLNESND-D 211 (299)
T ss_pred ccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC-Cccc-------c--cCCcEeeccCCEEeccCCC-C
Confidence 4467889999999988776544 99999 67888766643311 1111 1 23345555555554 4 6
Q ss_pred CeEEEEeC------------CEEEEEcCCCc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCe
Q psy4832 364 DSLHFIDD------------RVIFKLTNDLK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSL 430 (770)
Q Consensus 364 g~lyv~D~------------~~I~~i~~~G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P 430 (770)
+.|-+-|| ++|+.+++..+ ++.+.....+.... . -...
T Consensus 212 ~~IslFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~---------------------------~--s~~~ 262 (299)
T PF14269_consen 212 GTISLFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGF---------------------------Y--SPSQ 262 (299)
T ss_pred CEEEEEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcc---------------------------c--ccCC
Confidence 77777775 36788886543 33222111000000 0 0011
Q ss_pred eEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEE
Q psy4832 431 TALAFSPTGDLYIADIDARKVNALRVIDSTGRMF 464 (770)
Q Consensus 431 ~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~ 464 (770)
-.+..-|+|+++|.+....+ +..++++|++.
T Consensus 263 G~~Q~L~nGn~li~~g~~g~---~~E~~~~G~vv 293 (299)
T PF14269_consen 263 GSAQRLPNGNVLIGWGNNGR---ISEFTPDGEVV 293 (299)
T ss_pred CcceECCCCCEEEecCCCce---EEEECCCCCEE
Confidence 22334578999999999875 78899999864
No 145
>KOG0268|consensus
Probab=83.67 E-value=19 Score=38.35 Aligned_cols=68 Identities=21% Similarity=0.397 Sum_probs=44.1
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCC-CcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDST-GRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~-G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
...++++|.|.=||+-+.... ||.+..+ |.-..+. -..++++..++..
T Consensus 275 V~dVdfsptG~EfvsgsyDks---IRIf~~~~~~SRdiY----------------------------htkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 275 VMDVDFSPTGQEFVSGSYDKS---IRIFPVNHGHSRDIY----------------------------HTKRMQHVFCVKY 323 (433)
T ss_pred EEEeccCCCcchhccccccce---EEEeecCCCcchhhh----------------------------hHhhhheeeEEEE
Confidence 577899999999998887764 4444322 1111110 1234677888999
Q ss_pred cCCCcEEEE--cCCCceEEeee
Q psy4832 509 SPDGVVNVA--DQGSLHILALQ 528 (770)
Q Consensus 509 ~~dG~lyva--D~~~~~I~~i~ 528 (770)
+.|....++ |.+|.|+|+..
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred eccccEEEecCCCcceeeeecc
Confidence 888776665 66777777653
No 146
>KOG0263|consensus
Probab=83.41 E-value=69 Score=37.56 Aligned_cols=132 Identities=16% Similarity=0.265 Sum_probs=72.1
Q ss_pred ceEEEccCCcEEEEeCCC--eE--EECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 295 KGLAIKADKTMFIADGTN--IR--VVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 295 ~gIavd~~G~lYvaD~~~--Ir--~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.|..+.|+.+..++.+.. +| -++..-.+...-|... --..+.|.| -|.-|++-
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~----------------------PVwdV~F~P-~GyYFata 511 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA----------------------PVWDVQFAP-RGYYFATA 511 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCc----------------------ceeeEEecC-CceEEEec
Confidence 477888888888876653 44 4444444444333211 012455666 45444433
Q ss_pred C----CEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEEeC
Q psy4832 371 D----RVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADI 446 (770)
Q Consensus 371 ~----~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~ 446 (770)
+ .++|..+..--.++++|. +.....+.|.|+.+...+.+
T Consensus 512 s~D~tArLWs~d~~~PlRifagh-------------------------------------lsDV~cv~FHPNs~Y~aTGS 554 (707)
T KOG0263|consen 512 SHDQTARLWSTDHNKPLRIFAGH-------------------------------------LSDVDCVSFHPNSNYVATGS 554 (707)
T ss_pred CCCceeeeeecccCCchhhhccc-------------------------------------ccccceEEECCcccccccCC
Confidence 2 355555554445555542 23346688988866555554
Q ss_pred CCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEE
Q psy4832 447 DARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVA 517 (770)
Q Consensus 447 ~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyva 517 (770)
..+. .|++-+.+...+..+.|-. ....+|+++|+|.-..+
T Consensus 555 sD~t-VRlWDv~~G~~VRiF~GH~------------------------------~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 555 SDRT-VRLWDVSTGNSVRIFTGHK------------------------------GPVTALAFSPCGRYLAS 594 (707)
T ss_pred CCce-EEEEEcCCCcEEEEecCCC------------------------------CceEEEEEcCCCceEee
Confidence 4443 3455554545555554421 12578999999865554
No 147
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=83.19 E-value=47 Score=32.31 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=14.0
Q ss_pred ecCceEEEEEecCCceEEEEEeCCCCEEEEEcCCCC
Q psy4832 634 LTNDLKIRALKKGRFDVTYDYDHLDRLSVRKDNYGN 669 (770)
Q Consensus 634 ~~~g~l~~~~~~~g~~~~y~YD~~grlv~~~d~~G~ 669 (770)
|.+|....+...+-++++| +.||+ ..+|..|+
T Consensus 142 yPDGTvk~vy~dG~qet~y---~~gr~-r~kd~~g~ 173 (179)
T PF07202_consen 142 YPDGTVKTVYPDGRQETRY---ASGRV-RIKDKDGN 173 (179)
T ss_pred cCCCCEEEEecCCCEEEEe---CCCcE-EEecCCCC
Confidence 4455444333322244443 25554 34565554
No 148
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=83.15 E-value=0.94 Score=31.79 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.5
Q ss_pred CcceEEEccCCcEEEEeCC
Q psy4832 293 HPKGLAIKADKTMFIADGT 311 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~~ 311 (770)
.|.+|++|++|++||+-..
T Consensus 14 ~~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred eEEEEEECCCCCEEEEEee
Confidence 6899999999999998543
No 149
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=82.76 E-value=1.3 Score=31.05 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCeeEEEEcCCCCEEEEeCCC
Q psy4832 428 GSLTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 428 ~~P~giavd~~G~lyVaD~~~ 448 (770)
..|.+|++|++|++||+-..+
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred eeEEEEEECCCCCEEEEEeec
Confidence 358999999999999997654
No 150
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.67 E-value=70 Score=33.91 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=85.9
Q ss_pred EEcCCCC-EEEEeC------ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEE-----EEEeccC
Q psy4832 186 TSGPDGS-LYVGDF------NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQI-----LRVLSLE 253 (770)
Q Consensus 186 a~~~dG~-lyv~d~------~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I-----~~i~~~~ 253 (770)
++.+||. ||.++. +.|-+.+.......+-+. .+.-..|..|.+.|....|.|++-+-..- .|++..
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~- 134 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD- 134 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh-
Confidence 4668887 455543 378888877555555433 22334699999998444899987542110 122111
Q ss_pred CccCCCCcEEEE-ECCCccccCCCCCCcCCCcccc--cccccCcceEEEccCCcEEEEeCCC---------eEEECCCCc
Q psy4832 254 SVADPSINWEVA-VGSGERCIPGDETNCGDNGPAL--AAKLSHPKGLAIKADKTMFIADGTN---------IRVVSPEGI 321 (770)
Q Consensus 254 ~~~~~~g~~~~v-aG~g~~~~p~~~~~~g~~g~~~--~a~l~~P~gIavd~~G~lYvaD~~~---------Ir~id~~G~ 321 (770)
..+-++..+ +.+|.-- +.... .-...+-+-|+++.+|.++++.... +-....++.
T Consensus 135 ---tM~psL~~ld~~sG~ll----------~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~ 201 (305)
T PF07433_consen 135 ---TMQPSLVYLDARSGALL----------EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA 201 (305)
T ss_pred ---hcCCceEEEecCCCcee----------eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc
Confidence 122333333 2222210 00001 1122356789999999999885432 222333332
Q ss_pred EEEeecCCCCCCCcCCCccCCCcccccccc-cCcceEEEeCCCCeEE-EEe--CCEEEEEc-CCCcEE
Q psy4832 322 IHTLIGHHKHHNIWSPFNCHRSFPASTAQL-QWPTGLALSPLDDSLH-FID--DRVIFKLT-NDLKVK 384 (770)
Q Consensus 322 i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l-~~P~gla~d~~~g~ly-v~D--~~~I~~i~-~~G~v~ 384 (770)
+..+.... .....| ++--+||+++ ++.++ ++- .+++..++ .+|++.
T Consensus 202 ~~~~~~p~----------------~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 202 LRLLPAPE----------------EQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred ceeccCCh----------------HHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEe
Confidence 22211100 001123 3567899998 77655 444 47888885 556543
No 151
>PRK02889 tolB translocation protein TolB; Provisional
Probab=81.70 E-value=95 Score=34.80 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=17.8
Q ss_pred eEEEeCCCCe-EEEEe----CCEEEEEcCC-CcEEEEe
Q psy4832 356 GLALSPLDDS-LHFID----DRVIFKLTND-LKVKIVA 387 (770)
Q Consensus 356 gla~d~~~g~-lyv~D----~~~I~~i~~~-G~v~~va 387 (770)
..+++| +|+ |+++. ...|+.++.+ |+...+.
T Consensus 200 ~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~ 236 (427)
T PRK02889 200 SPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA 236 (427)
T ss_pred cceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee
Confidence 457778 664 54443 2468888854 5544443
No 152
>PRK01029 tolB translocation protein TolB; Provisional
Probab=80.77 E-value=1e+02 Score=34.59 Aligned_cols=51 Identities=25% Similarity=0.109 Sum_probs=28.5
Q ss_pred EEcCCCC----EEEEeC---ceEEEEcCCCc-EEEEeccCcccccceeEEEEeCCCCcEEEEe
Q psy4832 186 TSGPDGS----LYVGDF---NLVRRLTPEGN-VFTVLQLSATQVSYQYYLALSPADGHLYISD 240 (770)
Q Consensus 186 a~~~dG~----lyv~d~---~~I~~i~~~G~-v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd 240 (770)
++.|||. +|++.. ..|..++.+|. ...+.... ......+++|.+..|.++-
T Consensus 191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s 249 (428)
T PRK01029 191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ----GNQLMPTFSPRKKLLAFIS 249 (428)
T ss_pred eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC----CCccceEECCCCCEEEEEE
Confidence 6788875 345554 26888887643 33332211 1234568888554666554
No 153
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=80.46 E-value=5.9 Score=33.04 Aligned_cols=53 Identities=26% Similarity=0.319 Sum_probs=34.6
Q ss_pred ceEEEEeecCCCCCCCccEEEEEEE-EceeEE-EEEeeCCCCceEEEEEecccccCceee
Q psy4832 22 LSSILIHLTHNEIPASLVKVHVRVE-IEGSVH-TKTYEADPNLTHVFTWNKRNVYKQKVY 79 (770)
Q Consensus 22 ~~~~~~~~~~~~~p~~l~~v~~~~~-v~g~~~-~~~~~~~p~~~~~~~W~~~d~y~~~v~ 79 (770)
+..+.+.| |..-..|.|.|. -.|++- +..+.+.+.-.+.|.||++|.-|+.+-
T Consensus 13 ~~~~~~~l-----~~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~ 67 (81)
T PF13860_consen 13 KGSIEYTL-----PEDADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVP 67 (81)
T ss_dssp EEEEEEEE-----CSSCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--
T ss_pred EEEEEEeC-----CCcccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCC
Confidence 34555555 677778888885 457774 445678888899999999999998754
No 154
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.84 E-value=4.7 Score=39.66 Aligned_cols=60 Identities=23% Similarity=0.405 Sum_probs=42.6
Q ss_pred CCCEEEEeC--ceEEEEcCC-CcEEEEeccC---------cccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 190 DGSLYVGDF--NLVRRLTPE-GNVFTVLQLS---------ATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 190 dG~lyv~d~--~~I~~i~~~-G~v~~~~~~~---------~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
||.||---+ ++|.||+|+ |++...+... .....-++|||.+|..+++|++--.=-.++.+
T Consensus 185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEE
Confidence 677775443 699999986 9998877642 23455789999999888999986543334433
No 155
>PRK02939 lipoprotein; Reviewed
Probab=78.25 E-value=52 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.207 Sum_probs=23.5
Q ss_pred EEEEEccCCcEeEEEecCcEEEEEeCCCCCeEEEEcCC
Q psy4832 696 ISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQY 733 (770)
Q Consensus 696 ~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~~~d~~ 733 (770)
..|.||.+|.++.+...+.+..+.||..|.|+.++...
T Consensus 123 l~~~~nd~GfI~~~~~~~~~~~Y~Yd~~g~P~~~t~~~ 160 (236)
T PRK02939 123 VSWETDDNGFVIKASGKEMQVEYRYDDEGYPLGKTTKS 160 (236)
T ss_pred EEEEECCCceEEEeecCCCceEEEecCCCCceeeEEec
Confidence 55566666666666655555566666666666655543
No 156
>PRK13616 lipoprotein LpqB; Provisional
Probab=78.17 E-value=1.5e+02 Score=34.90 Aligned_cols=162 Identities=12% Similarity=0.087 Sum_probs=79.2
Q ss_pred ccCceEEEEcCCCC--EEEE-------eC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEE
Q psy4832 179 LLTPVALTSGPDGS--LYVG-------DF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILR 248 (770)
Q Consensus 179 l~~P~~la~~~dG~--lyv~-------d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~ 248 (770)
+..+..+++.|||. .|+. |. ..|+..+..|....+.. ...+.. -.++|..+.||+....+ ++.+
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~--g~~~t~---PsWspDG~~lw~v~dg~-~~~~ 422 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE--GHSLTR---PSWSLDADAVWVVVDGN-TVVR 422 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec--CCCCCC---ceECCCCCceEEEecCc-ceEE
Confidence 34567788888886 3443 11 25666665554443321 112333 46787557788775433 3444
Q ss_pred EeccCCccCCCCcEEEEE-CCCccccCCCCCCcCCCccccccccc-CcceEEEccCCc-E-EEEeCCCeEE---E-CCCC
Q psy4832 249 VLSLESVADPSINWEVAV-GSGERCIPGDETNCGDNGPALAAKLS-HPKGLAIKADKT-M-FIADGTNIRV---V-SPEG 320 (770)
Q Consensus 249 i~~~~~~~~~~g~~~~va-G~g~~~~p~~~~~~g~~g~~~~a~l~-~P~gIavd~~G~-l-YvaD~~~Ir~---i-d~~G 320 (770)
+... +..+.+..+. ..++. .. .+. .+..+.+.+||. | |+++ +.|+. + +.+|
T Consensus 423 v~~~----~~~gql~~~~vd~ge~---------------~~-~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~Vvr~~~G 481 (591)
T PRK13616 423 VIRD----PATGQLARTPVDASAV---------------AS-RVPGPISELQLSRDGVRAAMIIG-GKVYLAVVEQTEDG 481 (591)
T ss_pred Eecc----CCCceEEEEeccCchh---------------hh-ccCCCcCeEEECCCCCEEEEEEC-CEEEEEEEEeCCCC
Confidence 4211 1233333221 11110 00 111 367788888886 3 3443 34332 2 2345
Q ss_pred cEEEeecCCCCCCCcCCCccCCCcccccccccC-cceEEEeCCCCeEEEEe---CCEEEEEcCCCcEEE
Q psy4832 321 IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQW-PTGLALSPLDDSLHFID---DRVIFKLTNDLKVKI 385 (770)
Q Consensus 321 ~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~-P~gla~d~~~g~lyv~D---~~~I~~i~~~G~v~~ 385 (770)
. .++. ... .....+.. +..+++-. ++.|+|.- +..|++++.||....
T Consensus 482 ~-~~l~-~~~---------------~l~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~vDG~~~~ 532 (591)
T PRK13616 482 Q-YALT-NPR---------------EVGPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVNLDGSNSD 532 (591)
T ss_pred c-eeec-ccE---------------EeecccCCccccceEec-CCEEEEEecCCCCceEEEecCCcccc
Confidence 4 2321 100 00111222 46677776 78888765 356888888876443
No 157
>PLN00181 protein SPA1-RELATED; Provisional
Probab=77.91 E-value=1.8e+02 Score=35.66 Aligned_cols=66 Identities=14% Similarity=0.113 Sum_probs=40.9
Q ss_pred ceEEEEcC-CCCEE-EEeC-ceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGP-DGSLY-VGDF-NLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~-dG~ly-v~d~-~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..++++.+ ++.+. .++. +.|+.++.. ++....+. ..-..-+.++++|.++.++++-...+.|+.++
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~---~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK---EHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec---CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 45677766 34443 3444 467777744 55444442 12234578999976788888887777777774
No 158
>KOG2110|consensus
Probab=77.88 E-value=64 Score=34.64 Aligned_cols=69 Identities=32% Similarity=0.370 Sum_probs=48.4
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEc-CCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVID-STGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~-~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
...|||+++|.+.-+-+..+.| ||.+. ++|....=.-.+. ..-+..+|++
T Consensus 176 lAalafs~~G~llATASeKGTV--IRVf~v~~G~kl~eFRRG~---------------------------~~~~IySL~F 226 (391)
T KOG2110|consen 176 LAALAFSPDGTLLATASEKGTV--IRVFSVPEGQKLYEFRRGT---------------------------YPVSIYSLSF 226 (391)
T ss_pred eeEEEECCCCCEEEEeccCceE--EEEEEcCCccEeeeeeCCc---------------------------eeeEEEEEEE
Confidence 4779999999999999988886 67666 5776433222220 1234778999
Q ss_pred cCCCcEEEEcCCCceEEee
Q psy4832 509 SPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 509 ~~dG~lyvaD~~~~~I~~i 527 (770)
+||+.+..+-..+..|..|
T Consensus 227 s~ds~~L~~sS~TeTVHiF 245 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIF 245 (391)
T ss_pred CCCCCeEEEecCCCeEEEE
Confidence 9999987776666665554
No 159
>KOG1539|consensus
Probab=77.33 E-value=1.1e+02 Score=36.31 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=39.8
Q ss_pred CceEEEEcCCCCEEE-EeC-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 181 TPVALTSGPDGSLYV-GDF-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 181 ~P~~la~~~dG~lyv-~d~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
+-.++++++=||.-+ +-. +.|-+++. +|.....++.....-..-.++|+|. -+.+.|+-...+ |.++
T Consensus 450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~G-ilkf 519 (910)
T KOG1539|consen 450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADG-ILKF 519 (910)
T ss_pred ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcc-eEEE
Confidence 456777777777444 333 57888874 4665555542222223357999994 677777765544 4444
No 160
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.05 E-value=1.1e+02 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=19.3
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCC
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVIDST 460 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~ 460 (770)
..+.-++++.+|. +||....-. ..|..+|..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa--~SVtVVDl~ 126 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPA--TSVTVVDLA 126 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSS--EEEEEEETT
T ss_pred ccccceEEccCCcEEEEEccCCC--CeEEEEECC
Confidence 3566778888776 888876543 357777753
No 161
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=76.86 E-value=40 Score=34.24 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=9.5
Q ss_pred EEEEEccCCcEeEEE
Q psy4832 696 ISLVYDERGFLIFAQ 710 (770)
Q Consensus 696 ~~~~yd~~G~l~~~~ 710 (770)
.+|.||..|.++.++
T Consensus 143 ~~Y~Yd~~g~pl~~t 157 (236)
T PF06788_consen 143 VTYRYDDEGFPLGKT 157 (236)
T ss_pred eEEEECCCCCccceE
Confidence 456666666666665
No 162
>KOG0301|consensus
Probab=76.55 E-value=57 Score=37.79 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=46.2
Q ss_pred cccCceEEEEcCCCCEEEEeC-ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 178 RLLTPVALTSGPDGSLYVGDF-NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 178 ~l~~P~~la~~~dG~lyv~d~-~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
....-+++++-+++.+.-++. +.|++++.+|.+.... .+.-++-|.|.... ++.++|+...++.++.+
T Consensus 178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~---~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEM---HGHTNFVYSISMAL-SDGLIVSTGEDRTLRIW 246 (745)
T ss_pred chhheeeeEEecCCCeEeecCCceEEEEeccCceeeee---eccceEEEEEEecC-CCCeEEEecCCceEEEe
Confidence 345578999988766554443 5899999988876544 22345567777553 67888888877766555
No 163
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=74.39 E-value=15 Score=25.68 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=16.9
Q ss_pred CCCCcEEEEeCCCcEEEEEe
Q psy4832 231 PADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 231 p~~g~lyvsd~~~~~I~~i~ 250 (770)
|.++.||+++...+.|..++
T Consensus 1 pd~~~lyv~~~~~~~v~~id 20 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVID 20 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEE
Confidence 34678999999999999985
No 164
>PRK05137 tolB translocation protein TolB; Provisional
Probab=72.72 E-value=1.7e+02 Score=32.87 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=10.8
Q ss_pred cEEEEcCCCceEEeee
Q psy4832 513 VVNVADQGSLHILALQ 528 (770)
Q Consensus 513 ~lyvaD~~~~~I~~i~ 528 (770)
.||++|......+.+.
T Consensus 183 ~l~~~d~dg~~~~~lt 198 (435)
T PRK05137 183 RLAIMDQDGANVRYLT 198 (435)
T ss_pred EEEEECCCCCCcEEEe
Confidence 7888887665555554
No 165
>PTZ00420 coronin; Provisional
Probab=71.94 E-value=2e+02 Score=33.54 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=16.1
Q ss_pred eeEEEEcCCCcEEEEcCCCceEEeee
Q psy4832 503 ISALSVSPDGVVNVADQGSLHILALQ 528 (770)
Q Consensus 503 P~giav~~dG~lyvaD~~~~~I~~i~ 528 (770)
..+++++++|.++++-...+.|+.++
T Consensus 170 V~SlswspdG~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 170 LSSLKWNIKGNLLSGTCVGKHMHIID 195 (568)
T ss_pred EEEEEECCCCCEEEEEecCCEEEEEE
Confidence 56788888887777654444444443
No 166
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=70.03 E-value=1.5e+02 Score=31.18 Aligned_cols=140 Identities=20% Similarity=0.285 Sum_probs=70.7
Q ss_pred CCCEEEEeC-ceEEEEc---CCCcEEEEeccCcccc-cceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEE
Q psy4832 190 DGSLYVGDF-NLVRRLT---PEGNVFTVLQLSATQV-SYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEV 264 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~---~~G~v~~~~~~~~~~~-~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~ 264 (770)
..-+|++|. +-++.+| |+. - +..+. -.. .+-+++.++ ++.+||+|..+.-+ .++.. +|+.- .
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~s-P-~~~~~--lnt~gyaygv~vs--Gn~aYVadlddgfL-ivdvs----dpssP--~ 162 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDS-P-TLIGF--LNTDGYAYGVYVS--GNYAYVADLDDGFL-IVDVS----DPSSP--Q 162 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCC-c-ceecc--ccCCceEEEEEec--CCEEEEeeccCcEE-EEECC----CCCCc--e
Confidence 556899987 3444444 222 1 22211 111 456777776 78999999855432 23211 33322 2
Q ss_pred EECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCC-CcEEEeecCCCCCCCcCCCccCC
Q psy4832 265 AVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHR 342 (770)
Q Consensus 265 vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~ 342 (770)
++|.... ..+ .-+.+++. -..-|+|+..+ +..+|-. ..--.+.|.-.. .|
T Consensus 163 lagrya~-------~~~-----------d~~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~----g~----- 214 (370)
T COG5276 163 LAGRYAL-------PGG-----------DTHDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT----GP----- 214 (370)
T ss_pred eeeeecc-------CCC-----------CceeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec----CC-----
Confidence 3443221 111 11467774 34589998777 5555522 221223332210 00
Q ss_pred CcccccccccCcceEEEeCCCCeEEEEe-CCEEEEEcCCCc
Q psy4832 343 SFPASTAQLQWPTGLALSPLDDSLHFID-DRVIFKLTNDLK 382 (770)
Q Consensus 343 ~~~~~~~~l~~P~gla~d~~~g~lyv~D-~~~I~~i~~~G~ 382 (770)
.-.++.++ ++..|+++ +-.+..++.++.
T Consensus 215 ----------g~~sv~vs--dnr~y~vvy~egvlivd~s~~ 243 (370)
T COG5276 215 ----------GTYSVSVS--DNRAYLVVYDEGVLIVDVSGP 243 (370)
T ss_pred ----------ceEEEEec--CCeeEEEEcccceEEEecCCC
Confidence 12334444 78899998 556777777664
No 167
>KOG0646|consensus
Probab=69.71 E-value=1.9e+02 Score=32.17 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=43.5
Q ss_pred eEEEEcCCCCEEEEeC--ceEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 183 VALTSGPDGSLYVGDF--NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 183 ~~la~~~dG~lyv~d~--~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.+|+.+|+|...++.. ..|..+. ..|....++ ..-...-..|.|+ .+|..+|+-...+.|+.+.
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~ 151 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVL---SAHYQSITCLKFS-DDGSHIITGSKDGAVLVWL 151 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHH---HhhccceeEEEEe-CCCcEEEecCCCccEEEEE
Confidence 5677788888777663 3344433 457666554 2334445678888 5999999999988887764
No 168
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.24 E-value=1.6e+02 Score=31.26 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=42.0
Q ss_pred CCeeEEEEcCCCC-EEEEeCCCCceeeEEEEc-CCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeE
Q psy4832 428 GSLTALAFSPTGD-LYIADIDARKVNALRVID-STGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISA 505 (770)
Q Consensus 428 ~~P~giavd~~G~-lyVaD~~~~ri~~i~~i~-~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~g 505 (770)
...-+||++.+|. +.++.-..++ +...| .+|++.... .+..-.|
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~---~~~~d~~tg~~~~~~-------------------------------~l~D~cG 262 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGR---VAVWDAATGRLLGSV-------------------------------PLPDACG 262 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCE---EEEEECCCCCEeecc-------------------------------ccCceee
Confidence 4567899999987 5566666665 44444 466653322 1333457
Q ss_pred EEEcCCCcEEEEcCCCceEEeeecCC
Q psy4832 506 LSVSPDGVVNVADQGSLHILALQHYL 531 (770)
Q Consensus 506 iav~~dG~lyvaD~~~~~I~~i~~~~ 531 (770)
||..++| |++-.+.+.+..+....
T Consensus 263 va~~~~~--f~~ssG~G~~~~~~~~~ 286 (305)
T PF07433_consen 263 VAPTDDG--FLVSSGQGQLIRLSPDG 286 (305)
T ss_pred eeecCCc--eEEeCCCccEEEccCcc
Confidence 7887777 66666777777665443
No 169
>KOG0278|consensus
Probab=68.94 E-value=1.4e+02 Score=30.48 Aligned_cols=105 Identities=18% Similarity=0.425 Sum_probs=64.2
Q ss_pred CcceEEEccCCcEE-EEeCCCeEEECCC--CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 293 HPKGLAIKADKTMF-IADGTNIRVVSPE--GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 293 ~P~gIavd~~G~lY-vaD~~~Ir~id~~--G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
.+..+.+..+|.|. ++++..|...|++ +.+...- .||. -..-.+.| +..+||+
T Consensus 186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-----------~P~n------------V~SASL~P-~k~~fVa 241 (334)
T KOG0278|consen 186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-----------MPCN------------VESASLHP-KKEFFVA 241 (334)
T ss_pred CCcceeeccCCCEEEEecCceeEEeccccccceeecc-----------Cccc------------cccccccC-CCceEEe
Confidence 46788999999854 5666657666654 2332210 1221 22334567 7789999
Q ss_pred eC--CEEEEEcCC-Cc-EEEE-ecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEEEE
Q psy4832 370 DD--RVIFKLTND-LK-VKIV-AGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLYIA 444 (770)
Q Consensus 370 D~--~~I~~i~~~-G~-v~~v-aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVa 444 (770)
-+ ..++|+|-+ |. +... -| .+.-...+-|+|+|.+|-+
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkg-------------------------------------h~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKG-------------------------------------HFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred cCcceEEEEEeccCCceeeecccC-------------------------------------CCCceEEEEECCCCceeec
Confidence 74 678898843 43 2111 11 1223588999999999999
Q ss_pred eCCCCceeeEEEEcC
Q psy4832 445 DIDARKVNALRVIDS 459 (770)
Q Consensus 445 D~~~~ri~~i~~i~~ 459 (770)
-+....| |+++..+
T Consensus 285 GSEDGTi-rlWQt~~ 298 (334)
T KOG0278|consen 285 GSEDGTI-RLWQTTP 298 (334)
T ss_pred cCCCceE-EEEEecC
Confidence 8877654 4555443
No 170
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=68.67 E-value=1.7e+02 Score=31.81 Aligned_cols=74 Identities=24% Similarity=0.248 Sum_probs=37.8
Q ss_pred eEEEeCCCCeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEE
Q psy4832 356 GLALSPLDDSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTAL 433 (770)
Q Consensus 356 gla~d~~~g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~gi 433 (770)
.|++-. +++||+.+ .+...+++.+|.-.+.-|.+. ....+..|....++
T Consensus 56 ~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~d----------------------------wvyeEEv~~~~~~~ 106 (353)
T PF00930_consen 56 YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPD----------------------------WVYEEEVFDRRSAV 106 (353)
T ss_dssp EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB------------------------------HHHHHHTSSSSBSE
T ss_pred eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccc----------------------------eeccccccccccce
Confidence 355555 67777776 356666666663333333221 01122236778899
Q ss_pred EEcCCCC-EEEEeCCCCceeeEEEEc
Q psy4832 434 AFSPTGD-LYIADIDARKVNALRVID 458 (770)
Q Consensus 434 avd~~G~-lyVaD~~~~ri~~i~~i~ 458 (770)
..+|+|. |.+.-.+...|..+...+
T Consensus 107 ~WSpd~~~la~~~~d~~~v~~~~~~~ 132 (353)
T PF00930_consen 107 WWSPDSKYLAFLRFDEREVPEYPLPD 132 (353)
T ss_dssp EE-TTSSEEEEEEEE-TTS-EEEEEE
T ss_pred EECCCCCEEEEEEECCcCCceEEeec
Confidence 9999987 555555555554554443
No 171
>KOG0289|consensus
Probab=68.45 E-value=1.9e+02 Score=31.85 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=40.3
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS 509 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~ 509 (770)
...|+|+.+|...++..+...| +++-+-..-.+.++.-.. +.....+.+|
T Consensus 392 vk~i~FsENGY~Lat~add~~V-~lwDLRKl~n~kt~~l~~-----------------------------~~~v~s~~fD 441 (506)
T KOG0289|consen 392 VKAISFSENGYWLATAADDGSV-KLWDLRKLKNFKTIQLDE-----------------------------KKEVNSLSFD 441 (506)
T ss_pred eeEEEeccCceEEEEEecCCeE-EEEEehhhcccceeeccc-----------------------------cccceeEEEc
Confidence 4889999999877766665532 222221222333332111 1124568888
Q ss_pred CCCcEEEEcCCCceEEeeecC
Q psy4832 510 PDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 510 ~dG~lyvaD~~~~~I~~i~~~ 530 (770)
..|...++-....+|+.+.+.
T Consensus 442 ~SGt~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 442 QSGTYLGIAGSDLQVYICKKK 462 (506)
T ss_pred CCCCeEEeecceeEEEEEecc
Confidence 888777666566666666543
No 172
>KOG0285|consensus
Probab=67.38 E-value=1.8e+02 Score=31.22 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=67.8
Q ss_pred ccccCceEEEEcCCCCEEEEeC-c-eEEEEc-CCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccC
Q psy4832 177 ARLLTPVALTSGPDGSLYVGDF-N-LVRRLT-PEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLE 253 (770)
Q Consensus 177 ~~l~~P~~la~~~dG~lyv~d~-~-~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~ 253 (770)
..+..-++|++||-...|.+.. + .|..+| ..|+....+ .+-.....+++|++.--.|| +-....+|.-++
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltl---tGhi~~vr~vavS~rHpYlF-s~gedk~VKCwD--- 221 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTL---TGHIETVRGVAVSKRHPYLF-SAGEDKQVKCWD--- 221 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEee---cchhheeeeeeecccCceEE-EecCCCeeEEEe---
Confidence 3456678999999755555544 2 455556 456665443 22345568999986443444 444445555442
Q ss_pred CccCCCCc--EEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECC--CCcEEEeec
Q psy4832 254 SVADPSIN--WEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSP--EGIIHTLIG 327 (770)
Q Consensus 254 ~~~~~~g~--~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~--~G~i~t~~g 327 (770)
..-+ +... ...|..-..+++.|.-.+.++.+.. ||+-|. .-.|.++.|
T Consensus 222 ----Le~nkvIR~Y----------------------hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G 275 (460)
T KOG0285|consen 222 ----LEYNKVIRHY----------------------HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG 275 (460)
T ss_pred ----chhhhhHHHh----------------------ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC
Confidence 2211 1111 1235556678888866677765544 666663 346777766
Q ss_pred CC
Q psy4832 328 HH 329 (770)
Q Consensus 328 ~~ 329 (770)
..
T Consensus 276 H~ 277 (460)
T KOG0285|consen 276 HT 277 (460)
T ss_pred CC
Confidence 54
No 173
>KOG1539|consensus
Probab=66.89 E-value=84 Score=37.32 Aligned_cols=91 Identities=15% Similarity=0.090 Sum_probs=47.9
Q ss_pred cccCCCCCccceee--eee-cCCCeEEECCCccEEecccCCCeEEEE-eccCccCCccCCCCCcccccccccCceEEEEc
Q psy4832 113 DISDIGGWSLDVHH--HYN-FHEGILQKGDGSSLHLKHEFPRTVSVV-MGTGLQRPLVCKDCDGVARDARLLTPVALTSG 188 (770)
Q Consensus 113 ~~~~~ggw~l~~~~--~~~-~~~gil~~~dG~~~~~~~~~~~~i~~v-~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~ 188 (770)
.-..+|.|.|+... ..+ .-..+....-|...++-. ..+.|..+ +-+|..+.-. ...+ +.=..-.+|++|
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~-S~G~Id~fNmQSGi~r~sf---~~~~---ah~~~V~gla~D 502 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY-SKGTIDRFNMQSGIHRKSF---GDSP---AHKGEVTGLAVD 502 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEec-cCCeEEEEEcccCeeeccc---ccCc---cccCceeEEEec
Confidence 33445666665210 011 123455667776677765 66777776 4456554211 1111 112345789999
Q ss_pred CCCCEEEEeC--ceEEEEcCCCcE
Q psy4832 189 PDGSLYVGDF--NLVRRLTPEGNV 210 (770)
Q Consensus 189 ~dG~lyv~d~--~~I~~i~~~G~v 210 (770)
.-+.+.|+-. +.+..++-++++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcc
Confidence 8887777654 344444544443
No 174
>KOG1407|consensus
Probab=65.58 E-value=1.7e+02 Score=30.17 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.1
Q ss_pred eeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 224 QYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 224 p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
...++.+|....++++-.+...|+.++
T Consensus 67 vdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhhheeCCCCCcceEEecCCceEEEEE
Confidence 345788888888888888888887775
No 175
>KOG0640|consensus
Probab=65.46 E-value=1.9e+02 Score=30.56 Aligned_cols=110 Identities=9% Similarity=0.190 Sum_probs=55.4
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCCcEE-EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGNVF-TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~-~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
-..+.+.|...|.++.. +.|+-+|-..... .-+.. -........|.++| .|.....-+....++.++.
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv------- 245 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-FQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDV------- 245 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH-hhccceeeeEeecC-CCceEEEecCCCceeEEec-------
Confidence 45678888888888765 4566665322111 10100 01222346889998 5555555555444444421
Q ss_pred CCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEEC
Q psy4832 259 SINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVS 317 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id 317 (770)
+ ....++.. -|.+ ... ..-..+-..+.|+|||+-+.. |+..|
T Consensus 246 ~-T~Qcfvsa----nPd~-qht-----------~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 246 N-TYQCFVSA----NPDD-QHT-----------GAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred c-ceeEeeec----Cccc-ccc-----------cceeEEEecCCccEEEEeccCCcEEeec
Confidence 1 12222211 0100 111 123456677899999987643 66554
No 176
>KOG0293|consensus
Probab=65.33 E-value=2.2e+02 Score=31.29 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=43.1
Q ss_pred ceEEEccCCcEEEEeCCC--eEEECCC-CcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe-
Q psy4832 295 KGLAIKADKTMFIADGTN--IRVVSPE-GIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID- 370 (770)
Q Consensus 295 ~gIavd~~G~lYvaD~~~--Ir~id~~-G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D- 370 (770)
.-|++.||.+-.++.+.. ++.-|.+ |......+.+ .+ ..+...++.| ||.=+|+-
T Consensus 273 ~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~-~~-------------------~S~~sc~W~p-Dg~~~V~Gs 331 (519)
T KOG0293|consen 273 SYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG-LG-------------------FSVSSCAWCP-DGFRFVTGS 331 (519)
T ss_pred EEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC-cC-------------------CCcceeEEcc-CCceeEecC
Confidence 367888888877776654 5555543 5544445443 11 1356677778 77767776
Q ss_pred -CCEEEEEcCCCcE
Q psy4832 371 -DRVIFKLTNDLKV 383 (770)
Q Consensus 371 -~~~I~~i~~~G~v 383 (770)
...|...+.||.+
T Consensus 332 ~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNI 345 (519)
T ss_pred CCCcEEEecCCcch
Confidence 3567777888764
No 177
>KOG2055|consensus
Probab=64.17 E-value=2.4e+02 Score=31.40 Aligned_cols=24 Identities=38% Similarity=0.650 Sum_probs=16.7
Q ss_pred cccccCCeeEEEEcCCCC-EEEEeC
Q psy4832 423 SNMDLGSLTALAFSPTGD-LYIADI 446 (770)
Q Consensus 423 ~~~~l~~P~giavd~~G~-lyVaD~ 446 (770)
.+..+..++.|+|+|.|- |-|...
T Consensus 478 ~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred CCCcccceEEEEecCCCceEEeecC
Confidence 345678899999999654 545443
No 178
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=61.76 E-value=1.6e+02 Score=28.65 Aligned_cols=30 Identities=20% Similarity=0.438 Sum_probs=20.9
Q ss_pred CceEEEECCCCCEEEEEEcCCCcceEeccCCc
Q psy4832 583 GKLSTITDASGNKINFLRDYSNVAQLQWPTGL 614 (770)
Q Consensus 583 G~L~~vtd~~G~~~~~~~d~~~~~~~~~p~G~ 614 (770)
|.+..+ -++|.+++++- ..+..++..|+|.
T Consensus 37 GDvK~~-~pDg~v~Y~ya-~~~T~~tt~pdG~ 66 (179)
T PF07202_consen 37 GDVKQT-LPDGRVIYYYA-DAQTTHTTYPDGL 66 (179)
T ss_pred CCEeEE-ecCCcEEEEEe-CCCEEEEEcCCCc
Confidence 777666 57787665554 4566778889997
No 179
>KOG1538|consensus
Probab=61.70 E-value=3.2e+02 Score=31.97 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=55.4
Q ss_pred CceEEEEcCCCC-EEEEeCceEEEEcCC-CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCC
Q psy4832 181 TPVALTSGPDGS-LYVGDFNLVRRLTPE-GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADP 258 (770)
Q Consensus 181 ~P~~la~~~dG~-lyv~d~~~I~~i~~~-G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~ 258 (770)
.-..+|+.|||+ |.++-.+++..+|++ |.....+. +.-...+.+|.+ .+|.+|.+......|..+.. ..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK---gHKDtVycVAys-~dGkrFASG~aDK~VI~W~~-----kl 84 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK---GHKDTVYCVAYA-KDGKRFASGSADKSVIIWTS-----KL 84 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc---cccceEEEEEEc-cCCceeccCCCceeEEEecc-----cc
Confidence 346789999997 666767899999875 66555442 223346788998 59999988877666665533 23
Q ss_pred CCcEEEEECCCccccCC
Q psy4832 259 SINWEVAVGSGERCIPG 275 (770)
Q Consensus 259 ~g~~~~vaG~g~~~~p~ 275 (770)
+|.+.---+...+|..+
T Consensus 85 EG~LkYSH~D~IQCMsF 101 (1081)
T KOG1538|consen 85 EGILKYSHNDAIQCMSF 101 (1081)
T ss_pred cceeeeccCCeeeEeec
Confidence 44443333444455443
No 180
>KOG0273|consensus
Probab=60.16 E-value=2.8e+02 Score=30.92 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=25.7
Q ss_pred CcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecC
Q psy4832 293 HPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGH 328 (770)
Q Consensus 293 ~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~ 328 (770)
.-.+++...+|++.++-..+ +|..+.+|.....++.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~ 274 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQ 274 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhc
Confidence 35688888889988876655 8888888855444443
No 181
>KOG0284|consensus
Probab=59.67 E-value=1.6e+02 Score=32.19 Aligned_cols=105 Identities=14% Similarity=0.156 Sum_probs=63.4
Q ss_pred eEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEcCCCCEEEEeC--ceEEEEcCCCcEE
Q psy4832 134 ILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSGPDGSLYVGDF--NLVRRLTPEGNVF 211 (770)
Q Consensus 134 il~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~ 211 (770)
|...++|..+.+.. ..+..+..-|..-- |. .+ ..+-=..-++|.+.++|.-.|+-. +.|+.+.++-+..
T Consensus 102 v~WtPeGRRLltgs-~SGEFtLWNg~~fn--FE--ti----lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGS-QSGEFTLWNGTSFN--FE--TI----LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred EEEcCCCceeEeec-ccccEEEecCceee--HH--HH----hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 34456776666655 66666665552111 00 00 111122346788888998777543 4777777775554
Q ss_pred EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 212 TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 212 ~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.++. +..-..-.++|++| ++..|++-++.++|...+
T Consensus 173 k~~~--ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd 208 (464)
T KOG0284|consen 173 KIIQ--AHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD 208 (464)
T ss_pred HHhh--HhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence 4432 22224467999998 889999988888887664
No 182
>KOG2096|consensus
Probab=59.57 E-value=2.4e+02 Score=29.91 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=47.6
Q ss_pred CCeEEEEEEccCCcEeEEEecCcEEEEEeCCCCCeEE-EEcCCCCEEEEEEeCCCCceEEecCCceeeeec
Q psy4832 692 YGKLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVM-VFNQYGETVREIMRSPYGHIVYDSNPYIYLPID 761 (770)
Q Consensus 692 ~g~~~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~-~~d~~G~~v~~~~yd~~G~~~~~~~~~~~~p~~ 761 (770)
.+...|++--++|..+++.... ...+.+...|.... +.+..+..+..+.|++.|+-+..-....--.|+
T Consensus 331 g~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred CCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 5567799999999988887443 33344445566554 667788889999999999987555444333333
No 183
>PTZ00421 coronin; Provisional
Probab=59.23 E-value=3.2e+02 Score=31.30 Aligned_cols=30 Identities=30% Similarity=0.561 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCc
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDS-TGR 462 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~ 462 (770)
..+|+++++|.++++-...+. |+..|. ++.
T Consensus 171 V~sla~spdG~lLatgs~Dg~---IrIwD~rsg~ 201 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKK---LNIIDPRDGT 201 (493)
T ss_pred eEEEEEECCCCEEEEecCCCE---EEEEECCCCc
Confidence 588999999998887776654 566664 444
No 184
>KOG0315|consensus
Probab=58.33 E-value=2.2e+02 Score=29.14 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=32.3
Q ss_pred CeeEEEEcCCCcEEEEc--CCCceEEeeecCC------cc--------------cCCCCcEEEeCCCCCcEEEEecCCc
Q psy4832 502 SISALSVSPDGVVNVAD--QGSLHILALQHYL------PT--------------HDEHGEFKIPYPATNEIYVFNRYGQ 558 (770)
Q Consensus 502 ~P~giav~~dG~lyvaD--~~~~~I~~i~~~~------~~--------------~~~~g~~~i~~~~~~e~yvfd~~G~ 558 (770)
....++|.|||+..++- .|+--+++.-... |. +...+.|-.+.....++++|+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 35678999999877763 3444455542211 11 1122334445556667888887776
No 185
>PF09318 DUF1975: Domain of unknown function (DUF1975); InterPro: IPR015397 This domain is functionally uncharacterised and found predominantly in the N-terminal region of various prokaryotic alpha-glucosyltransferases.
Probab=57.78 E-value=1.7e+02 Score=28.79 Aligned_cols=38 Identities=37% Similarity=0.640 Sum_probs=20.6
Q ss_pred eEEEEEEccCCcEeEEEecCcEEEEEeCCCCCeEEEEcCCCCEEEEEEeCCCCceE
Q psy4832 694 KLISLVYDERGFLIFAQMFRHKYYIATDQCGTPVMVFNQYGETVREIMRSPYGHIV 749 (770)
Q Consensus 694 ~~~~~~yd~~G~l~~~~~~~~~~~~~~d~~G~~~~~~d~~G~~v~~~~yd~~G~~~ 749 (770)
...+-.||..|.+.+.+ .+|.+|+++.+.-|++.|++.
T Consensus 134 ~~~rd~YD~rGfls~~~------------------~~~~~g~~~~~~y~~~~G~~~ 171 (203)
T PF09318_consen 134 LIKRDFYDDRGFLSCTQ------------------YFDDDGKLIREQYYNPDGQVV 171 (203)
T ss_pred EEEEEEEcCCceEEEEE------------------EECCCCcEEEEEEECCCCcEE
Confidence 44566666666655443 334445555555555555544
No 186
>KOG0278|consensus
Probab=57.73 E-value=2.3e+02 Score=29.06 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=38.0
Q ss_pred EEEcCCCCEEEEeCCCCceeeEEEEcC-CCc-EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcC
Q psy4832 433 LAFSPTGDLYIADIDARKVNALRVIDS-TGR-MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSP 510 (770)
Q Consensus 433 iavd~~G~lyVaD~~~~ri~~i~~i~~-~G~-i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~ 510 (770)
....|+-.+|||-...- .++++|- .|+ +..+ . ...+.....|.++|
T Consensus 230 ASL~P~k~~fVaGged~---~~~kfDy~TgeEi~~~-n----------------------------kgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDF---KVYKFDYNTGEEIGSY-N----------------------------KGHFGPVHCVRFSP 277 (334)
T ss_pred ccccCCCceEEecCcce---EEEEEeccCCceeeec-c----------------------------cCCCCceEEEEECC
Confidence 34567778999977654 4677774 332 2111 0 11234467899999
Q ss_pred CCcEEEEcCCCceEE
Q psy4832 511 DGVVNVADQGSLHIL 525 (770)
Q Consensus 511 dG~lyvaD~~~~~I~ 525 (770)
||.+|.+-+..+.||
T Consensus 278 dGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 278 DGELYASGSEDGTIR 292 (334)
T ss_pred CCceeeccCCCceEE
Confidence 999999866555443
No 187
>KOG0276|consensus
Probab=57.04 E-value=3.7e+02 Score=31.25 Aligned_cols=67 Identities=10% Similarity=0.077 Sum_probs=45.4
Q ss_pred cCceEEEEcCCCCEEEEeCc--eEEEEcCCCcEE--EEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 180 LTPVALTSGPDGSLYVGDFN--LVRRLTPEGNVF--TVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 180 ~~P~~la~~~dG~lyv~d~~--~I~~i~~~G~v~--~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
..-+.|+++|.--.+++..+ .|+.++=+++.. .++ .+.-.+...+|+.|.+.+-|.+-.-.+.|...
T Consensus 98 DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf---eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW 168 (794)
T KOG0276|consen 98 DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF---EGHEHYVMQVAFNPKDPNTFASASLDRTVKVW 168 (794)
T ss_pred cceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE---cCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence 44578889887665555442 677777666654 344 23345678999999999999988776655444
No 188
>KOG0271|consensus
Probab=56.32 E-value=3e+02 Score=29.97 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=44.4
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCc--EEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEE
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGR--MFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALS 507 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~--i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gia 507 (770)
.-.++|+|+|.-.++-.+... +|.-|.+-+ +.+..|- -+....|+
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~T---vR~WD~~TeTp~~t~KgH------------------------------~~WVlcva 164 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTT---VRLWDLDTETPLFTCKGH------------------------------KNWVLCVA 164 (480)
T ss_pred EEEEEecCCCceEEecCCCce---EEeeccCCCCcceeecCC------------------------------ccEEEEEE
Confidence 467889999998888887654 555555433 2222211 23466788
Q ss_pred EcCCCcEEEEcCCCceEEeeec
Q psy4832 508 VSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 508 v~~dG~lyvaD~~~~~I~~i~~ 529 (770)
.+|||..+.+-.-++.|+--++
T Consensus 165 wsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 165 WSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred ECCCcchhhccccCCeEEEecC
Confidence 9999988887777777766654
No 189
>KOG0286|consensus
Probab=56.19 E-value=2.6e+02 Score=29.30 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=42.0
Q ss_pred eeEEEEcC-CCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEE
Q psy4832 430 LTALAFSP-TGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSV 508 (770)
Q Consensus 430 P~giavd~-~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav 508 (770)
..+|++.| +++.||+-.-... -+++-+-...-+.+|.|.. . ....|.+
T Consensus 189 V~slsl~p~~~ntFvSg~cD~~-aklWD~R~~~c~qtF~ghe-------------------s-----------DINsv~f 237 (343)
T KOG0286|consen 189 VMSLSLSPSDGNTFVSGGCDKS-AKLWDVRSGQCVQTFEGHE-------------------S-----------DINSVRF 237 (343)
T ss_pred EEEEecCCCCCCeEEecccccc-eeeeeccCcceeEeecccc-------------------c-----------ccceEEE
Confidence 57788888 8999998765432 2344333344455666544 1 1456888
Q ss_pred cCCCcEEEEcCCCceEEee
Q psy4832 509 SPDGVVNVADQGSLHILAL 527 (770)
Q Consensus 509 ~~dG~lyvaD~~~~~I~~i 527 (770)
-|+|.-|++-..+...|.+
T Consensus 238 fP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLY 256 (343)
T ss_pred ccCCCeeeecCCCceeEEE
Confidence 8888888876555555444
No 190
>KOG0643|consensus
Probab=52.91 E-value=2.8e+02 Score=28.71 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.2
Q ss_pred eecCCeeEEEEcCCCcEEEEcCCCceE
Q psy4832 498 ARFTSISALSVSPDGVVNVADQGSLHI 524 (770)
Q Consensus 498 ~~l~~P~giav~~dG~lyvaD~~~~~I 524 (770)
..|.-...||+.|+|..|-+-...+-|
T Consensus 285 GHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred ccccCcceeEECCCCcccccCCCCceE
Confidence 346667889999999999886555444
No 191
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=52.24 E-value=2.4e+02 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.0
Q ss_pred eeEEEEcCCCCEEEEeCCC
Q psy4832 430 LTALAFSPTGDLYIADIDA 448 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~ 448 (770)
...++.+|+|..+++-...
T Consensus 146 ~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTS 164 (194)
T ss_pred EEEEEEcCCCCEEEEEEec
Confidence 5789999999977776543
No 192
>PRK01029 tolB translocation protein TolB; Provisional
Probab=51.70 E-value=3.9e+02 Score=29.95 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=11.5
Q ss_pred CcEEEEcCCCceEEeeec
Q psy4832 512 GVVNVADQGSLHILALQH 529 (770)
Q Consensus 512 G~lyvaD~~~~~I~~i~~ 529 (770)
..||++|......+.+..
T Consensus 165 ~~l~~~d~dG~~~~~lt~ 182 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ 182 (428)
T ss_pred ceEEEEcCCCCCceEccc
Confidence 468888876655555543
No 193
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=49.69 E-value=3.7e+02 Score=29.11 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=35.9
Q ss_pred EEEEEccCCcEeEEEecC----cEEEEEeCC--CCCeEEEEcCCCCEEEEEEeCCCCceEEecCCc
Q psy4832 696 ISLVYDERGFLIFAQMFR----HKYYIATDQ--CGTPVMVFNQYGETVREIMRSPYGHIVYDSNPY 755 (770)
Q Consensus 696 ~~~~yd~~G~l~~~~~~~----~~~~~~~d~--~G~~~~~~d~~G~~v~~~~yd~~G~~~~~~~~~ 755 (770)
.-+.+|+.+..+..+... +...|..+- .|.+.++|...|.. .++.-.|-|+-+.++...
T Consensus 284 ~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~~Spdg~y~v~~~s~ 348 (353)
T PF00930_consen 284 SILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSASFSPDGKYYVDTYSG 348 (353)
T ss_dssp EEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEEE-TTSSEEEEEEES
T ss_pred ccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEEECCCCCEEEEEEcC
Confidence 346677777777666332 333333333 57888888888875 456777778866554433
No 194
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=49.31 E-value=3.4e+02 Score=28.62 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=67.3
Q ss_pred CCC-EEEEeC-ceEEEEcC-CCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcE-EEEEeccCCccCCCCcEEEE
Q psy4832 190 DGS-LYVGDF-NLVRRLTP-EGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQ-ILRVLSLESVADPSINWEVA 265 (770)
Q Consensus 190 dG~-lyv~d~-~~I~~i~~-~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~-I~~i~~~~~~~~~~g~~~~v 265 (770)
.|+ .||+|. +-...++. +-+-.++++..+..-...+.++++ ++.-|+++++++- |.-+. +|..- ++
T Consensus 137 sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVS------np~sP--vl 206 (370)
T COG5276 137 SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVS------NPHSP--VL 206 (370)
T ss_pred cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEcc------CCCCC--eE
Confidence 454 899996 33334442 222223333211111122578887 7899999887653 33332 22211 22
Q ss_pred ECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCCc-EEEeecCCCCCCCcCCCccCCC
Q psy4832 266 VGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEGI-IHTLIGHHKHHNIWSPFNCHRS 343 (770)
Q Consensus 266 aG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G~-i~t~~g~~~~~~~~~p~~~~~~ 343 (770)
.|.-.. | + .-+++.+. +...|+++... +..+|.++. -.+++|.....
T Consensus 207 i~~~n~---------g---~-------g~~sv~vs-dnr~y~vvy~egvlivd~s~~ssp~~~gsyet~----------- 255 (370)
T COG5276 207 IGSYNT---------G---P-------GTYSVSVS-DNRAYLVVYDEGVLIVDVSGPSSPTVFGSYETS----------- 255 (370)
T ss_pred EEEEec---------C---C-------ceEEEEec-CCeeEEEEcccceEEEecCCCCCceEeeccccC-----------
Confidence 221110 0 0 12355554 56799998877 777777663 23456554321
Q ss_pred cccccccccCcce---EEEeCCCCeEEEEeC
Q psy4832 344 FPASTAQLQWPTG---LALSPLDDSLHFIDD 371 (770)
Q Consensus 344 ~~~~~~~l~~P~g---la~d~~~g~lyv~D~ 371 (770)
.|.+ +.+. +...|++|+
T Consensus 256 ---------~p~~~s~v~Vs--~~~~Yvadg 275 (370)
T COG5276 256 ---------NPVSISTVPVS--GEYAYVADG 275 (370)
T ss_pred ---------Ccccccceecc--cceeeeecc
Confidence 2333 3555 788999995
No 195
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=48.43 E-value=31 Score=21.33 Aligned_cols=18 Identities=22% Similarity=0.641 Sum_probs=14.1
Q ss_pred CceEEEEcCCCCEEEEeC
Q psy4832 181 TPVALTSGPDGSLYVGDF 198 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~ 198 (770)
.-.+|..|++|+|||+..
T Consensus 6 ~I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp CEEEEEE-TTSCEEEEET
T ss_pred eEEEEEEcCCcCEEEEeC
Confidence 457899999999999864
No 196
>KOG0268|consensus
Probab=47.55 E-value=2.8e+02 Score=30.02 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=21.7
Q ss_pred CeeEEEEcCCCcEEEEcCCCceEEeeec
Q psy4832 502 SISALSVSPDGVVNVADQGSLHILALQH 529 (770)
Q Consensus 502 ~P~giav~~dG~lyvaD~~~~~I~~i~~ 529 (770)
....|.++|-|.=||+-+....||.+..
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPV 301 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeec
Confidence 4567889999999999888877766533
No 197
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.52 E-value=3.6e+02 Score=28.39 Aligned_cols=21 Identities=33% Similarity=0.249 Sum_probs=16.6
Q ss_pred cCCeeEEEEcCCCcEEEEcCC
Q psy4832 500 FTSISALSVSPDGVVNVADQG 520 (770)
Q Consensus 500 l~~P~giav~~dG~lyvaD~~ 520 (770)
-.+...|++++||++|..-+.
T Consensus 225 ~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 225 QLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred hcceeeeeeCCCCcEEEEEEe
Confidence 345778999999999988654
No 198
>KOG0301|consensus
Probab=47.51 E-value=5.3e+02 Score=30.32 Aligned_cols=111 Identities=21% Similarity=0.364 Sum_probs=57.8
Q ss_pred CceEEEEcCCCCEEEEeCc---eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDFN---LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~~---~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
+-.++..+.++.|.-+..+ +|+++. +....+ .+.-...+.++.-| ++ .|++-.....|+.+..
T Consensus 103 nVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l---~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~------ 168 (745)
T KOG0301|consen 103 NVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSL---QGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG------ 168 (745)
T ss_pred ceeeeecCCcCceEecccccceEEecch---hhhccc---CCcchheeeeeecC-CC-cEEeccCcceeeeccC------
Confidence 3456677777774444443 444443 222222 11223345666665 33 8998888777766631
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC-eEEECCCC-cEEEeecC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN-IRVVSPEG-IIHTLIGH 328 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~-Ir~id~~G-~i~t~~g~ 328 (770)
...+.++.| ....-+|+++-+++.+.=++... |+..+.+| .+.+..|.
T Consensus 169 -~~~l~tf~g----------------------HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~gh 218 (745)
T KOG0301|consen 169 -GTLLKTFSG----------------------HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGH 218 (745)
T ss_pred -Cchhhhhcc----------------------chhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeecc
Confidence 111222222 12245788887664444333322 88888876 44555544
No 199
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=47.43 E-value=3.4e+02 Score=27.98 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=56.2
Q ss_pred CCCeEEEEeccCccCCccCCCCCcccccccccCceEEEEc--C-CCCEEE--EeC-ceEEEE---c-CCCcEEEEeccCc
Q psy4832 149 FPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVALTSG--P-DGSLYV--GDF-NLVRRL---T-PEGNVFTVLQLSA 218 (770)
Q Consensus 149 ~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~la~~--~-dG~lyv--~d~-~~I~~i---~-~~G~v~~~~~~~~ 218 (770)
++..|....-++..+.+....+....-...+..|.+++.- + .|..|| .+. +.|+.+ + .+|++.+-+-
T Consensus 122 ~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~v--- 198 (364)
T COG4247 122 QNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLV--- 198 (364)
T ss_pred cCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceee---
Confidence 4445555554555443332222222345677889998875 3 366555 443 344433 2 4566654321
Q ss_pred cccc---ceeEEEEeCCCCcEEEEeCCCcEEEEEec
Q psy4832 219 TQVS---YQYYLALSPADGHLYISDAEKHQILRVLS 251 (770)
Q Consensus 219 ~~~~---~p~~lav~p~~g~lyvsd~~~~~I~~i~~ 251 (770)
.+|. ...|+..|...|.|||+... -.|||+..
T Consensus 199 R~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~A 233 (364)
T COG4247 199 RQFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEA 233 (364)
T ss_pred EeeecCCcccceeeccccceEEEeecc-ceeeeccc
Confidence 1222 34688888888999999864 57899853
No 200
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=46.96 E-value=3.3e+02 Score=27.77 Aligned_cols=129 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred eEEEcc-CCcEE-EEeCCCeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE-eCC
Q psy4832 296 GLAIKA-DKTMF-IADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI-DDR 372 (770)
Q Consensus 296 gIavd~-~G~lY-vaD~~~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~-D~~ 372 (770)
||.+-| +|.|| +.+.++|+.||+.--..+.+|..... .+--..+.++.|+|.-++|.|. +++
T Consensus 31 GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~---------------~al~g~~~gvDFNP~aDRlRvvs~~G 95 (236)
T PF14339_consen 31 GIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLT---------------VALSGTAFGVDFNPAADRLRVVSNTG 95 (236)
T ss_pred EEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeeccccc---------------ccccCceEEEecCcccCcEEEEccCC
Q ss_pred EEEEEcCC-CcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCC------CC-EEEE
Q psy4832 373 VIFKLTND-LKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPT------GD-LYIA 444 (770)
Q Consensus 373 ~I~~i~~~-G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~------G~-lyVa 444 (770)
.=+|++++ |.+...-|.-.........+. -....+.|...+ .. ||--
T Consensus 96 qNlR~npdtGav~~~Dg~L~y~~gd~~~G~-------------------------~p~v~aaAYTNs~~g~~t~TtLy~I 150 (236)
T PF14339_consen 96 QNLRLNPDTGAVTIVDGNLAYAAGDMNAGT-------------------------TPGVTAAAYTNSFAGATTSTTLYDI 150 (236)
T ss_pred cEEEECCCCCCceeccCccccCCCccccCC-------------------------CCceEEEEEecccCCCccceEEEEE
Q ss_pred eCCCCceeeEEEEcC-CCcEEEe
Q psy4832 445 DIDARKVNALRVIDS-TGRMFDF 466 (770)
Q Consensus 445 D~~~~ri~~i~~i~~-~G~i~~~ 466 (770)
|....++ +.+-.| +|.+.++
T Consensus 151 D~~~~~L--v~Q~ppN~GtL~~v 171 (236)
T PF14339_consen 151 DTTLDAL--VTQNPPNDGTLNTV 171 (236)
T ss_pred ecCCCeE--EEecCCCCCcEEee
No 201
>KOG2110|consensus
Probab=46.65 E-value=1.1e+02 Score=32.79 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=42.9
Q ss_pred ceEEEeCCCCeEEEEe--CCE-EEEEc-CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCe
Q psy4832 355 TGLALSPLDDSLHFID--DRV-IFKLT-NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSL 430 (770)
Q Consensus 355 ~gla~d~~~g~lyv~D--~~~-I~~i~-~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P 430 (770)
..|||++ +|.+..+. .+. |+++. ++|+...-+-++..| ...
T Consensus 177 Aalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~----------------------------------~~I 221 (391)
T KOG2110|consen 177 AALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP----------------------------------VSI 221 (391)
T ss_pred eEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee----------------------------------eEE
Confidence 4799999 99998876 354 44444 677644333333322 346
Q ss_pred eEEEEcCCCCEEEEeCCCCcee
Q psy4832 431 TALAFSPTGDLYIADIDARKVN 452 (770)
Q Consensus 431 ~giavd~~G~lyVaD~~~~ri~ 452 (770)
.+|+|++++.+..+-..+..|+
T Consensus 222 ySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 222 YSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred EEEEECCCCCeEEEecCCCeEE
Confidence 8999999999888887777654
No 202
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=45.57 E-value=1.2e+02 Score=30.85 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=36.3
Q ss_pred ceEEEEeecCCCCCCCccEEEEEEEE-ceeEE-EEEeeCCCCceEEEEEecccccCcee
Q psy4832 22 LSSILIHLTHNEIPASLVKVHVRVEI-EGSVH-TKTYEADPNLTHVFTWNKRNVYKQKV 78 (770)
Q Consensus 22 ~~~~~~~~~~~~~p~~l~~v~~~~~v-~g~~~-~~~~~~~p~~~~~~~W~~~d~y~~~v 78 (770)
...+++.| |..-..|.|+|.= +|.+- +..+.+.+.-.+.|.||++|.-|..+
T Consensus 114 ~~~~~~~l-----~~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~l 167 (225)
T PRK06655 114 TTPFGVEL-----PSAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNAL 167 (225)
T ss_pred ceEEEEEc-----CCCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcC
Confidence 44555555 6666677777743 47654 35565666777999999999988876
No 203
>PF14977 FAM194: FAM194 protein
Probab=45.08 E-value=2.1e+02 Score=28.62 Aligned_cols=75 Identities=23% Similarity=0.200 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCeEEEEEEccCCcEeEEE---ecCcEEEEEe--CCCCCeEEEEcCCCCEEEEEEeCCCCceEEecCCcee
Q psy4832 683 QVTHIYSPRYGKLISLVYDERGFLIFAQ---MFRHKYYIAT--DQCGTPVMVFNQYGETVREIMRSPYGHIVYDSNPYIY 757 (770)
Q Consensus 683 ~~~~~~~p~~g~~~~~~yd~~G~l~~~~---~~~~~~~~~~--d~~G~~~~~~d~~G~~v~~~~yd~~G~~~~~~~~~~~ 757 (770)
++-.+..| ||...- |=++|++.-.. ..++.+++.+ .+.+..+|++|+.|+ -.-|++.|++...-++
T Consensus 15 ~~f~~~f~-DGsg~i--~YPSGnlAi~~~~~~~~~~~~~v~eD~~~~~ilA~Fd~~G~---g~~y~~~g~~~l~l~~--- 85 (208)
T PF14977_consen 15 RKFHYMFP-DGSGQI--FYPSGNLAICISPTCRGGFTYIVYEDSPENTILALFDSSGH---GTCYHPNGNIWLVLNQ--- 85 (208)
T ss_pred cEEEEEcC-CCCEEE--EeCCCCEEEEEeccCCCceEEEEEecCCCCceEEEEcCCCC---EEEEcCCCCEEEEEEC---
Q ss_pred eeeccCccccCCC
Q psy4832 758 LPIDFCGGLLDQE 770 (770)
Q Consensus 758 ~p~~~~G~~~d~~ 770 (770)
.-|.+.|++
T Consensus 86 ----~gG~~~D~~ 94 (208)
T PF14977_consen 86 ----EGGQYFDQK 94 (208)
T ss_pred ----CCCEEEcCC
No 204
>PRK04043 tolB translocation protein TolB; Provisional
Probab=44.44 E-value=5e+02 Score=29.06 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=9.9
Q ss_pred CcEEEEcCCCceEEee
Q psy4832 512 GVVNVADQGSLHILAL 527 (770)
Q Consensus 512 G~lyvaD~~~~~I~~i 527 (770)
-.||++|......+.+
T Consensus 169 ~~l~~~d~dg~~~~~~ 184 (419)
T PRK04043 169 SNIVLADYTLTYQKVI 184 (419)
T ss_pred ceEEEECCCCCceeEE
Confidence 3789988755444434
No 205
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=43.95 E-value=39 Score=25.91 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCEEEEeC---------ceEEEEcCCCcEEEEec
Q psy4832 182 PVALTSGPDGSLYVGDF---------NLVRRLTPEGNVFTVLQ 215 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~---------~~I~~i~~~G~v~~~~~ 215 (770)
-+++++.|||.|+++-. ..|.|+++||+.-+.|+
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg 45 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTFG 45 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCcC
Confidence 36789999999998653 15999999998877764
No 206
>KOG0293|consensus
Probab=42.21 E-value=5.1e+02 Score=28.57 Aligned_cols=185 Identities=14% Similarity=0.125 Sum_probs=96.6
Q ss_pred CceEEEEcCCCCEEEEeC----ceEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGPDGSLYVGDF----NLVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~----~~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
.-+-+.+.++|.-.-+-. .-|..+..++.+.-...+ .+-.....+|.++| +++-.++-.....++..+..
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~---- 299 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVD---- 299 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEEEECC-CCCeEEecCchHheeeccCC----
Confidence 345666666666333222 146666777773322111 11222346889998 55555555544455555321
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCCCcEEEeecCCCCCCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPEGIIHTLIGHHKHHNI 334 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~G~i~t~~g~~~~~~~ 334 (770)
.|......+.+. -..+...+.-|||.=+|+-+.. |...+.||.+.--
T Consensus 300 --tgd~~~~y~~~~--------------------~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~--------- 348 (519)
T KOG0293|consen 300 --TGDLRHLYPSGL--------------------GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN--------- 348 (519)
T ss_pred --cchhhhhcccCc--------------------CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc---------
Confidence 222222222110 1246677777888777775443 7888888876221
Q ss_pred cCCCccCCCcccccccccCcceEEEeCCCCe-EEEEe-CCEEEEEcCCCcEEE-EecCCCCCCCCCCCCccccccccccc
Q psy4832 335 WSPFNCHRSFPASTAQLQWPTGLALSPLDDS-LHFID-DRVIFKLTNDLKVKI-VAGIPLHCRTGDKDKRDFKDKQSKTK 411 (770)
Q Consensus 335 ~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~-lyv~D-~~~I~~i~~~G~v~~-vaG~~~~~~~~~~~~~~~~~~~~~~~ 411 (770)
|. ..+...-.+||+.+ ||. ++..+ ..+|+.++-.-++.+ +.-
T Consensus 349 W~-----------gvr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis----------------------- 393 (519)
T KOG0293|consen 349 WE-----------GVRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS----------------------- 393 (519)
T ss_pred cc-----------ccccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-----------------------
Confidence 21 11223456899998 664 66655 344554442221111 000
Q ss_pred cccccCCcccccccccCCeeEEEEcCCCCEEEEeCCCCce
Q psy4832 412 KSTVQDDSVRASNMDLGSLTALAFSPTGDLYIADIDARKV 451 (770)
Q Consensus 412 ~~~~~~~~~~a~~~~l~~P~giavd~~G~lyVaD~~~~ri 451 (770)
. -...+.+.++.+|.+.+..-..+.|
T Consensus 394 -----------e---~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 394 -----------E---EQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred -----------c---cCceeEEEEcCCCcEEEEEcccCee
Confidence 0 0124778889999988888877654
No 207
>KOG2919|consensus
Probab=42.18 E-value=4.6e+02 Score=28.01 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred EEEEecCCceEEEEEeCCCCEEEEEcCCCCEEEEEecCCCCCeeEEEEEeCCCCeEEEEEEccCCcEeEEEecCcEEEEE
Q psy4832 640 IRALKKGRFDVTYDYDHLDRLSVRKDNYGNITQFFYNNHEYPTQVTHIYSPRYGKLISLVYDERGFLIFAQMFRHKYYIA 719 (770)
Q Consensus 640 ~~~~~~~g~~~~y~YD~~grlv~~~d~~G~~~~~~y~~~~~~~~~~~~~~p~~g~~~~~~yd~~G~l~~~~~~~~~~~~~ 719 (770)
.+.++.-.+.+.|.-|..|+.++.=+..|.+..|.-.+.+.+..++ -+....+-.+...+. +++..+..|++.+-.
T Consensus 291 ~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~---~~~sd~vNgvslnP~-mpilatssGqr~f~~ 366 (406)
T KOG2919|consen 291 ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT---GNYSDTVNGVSLNPI-MPILATSSGQRIFKY 366 (406)
T ss_pred hhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc---ccccccccceecCcc-cceeeeccCceeecC
Confidence 3455555677889999999999988899988888888777653343 333445666777777 777777777665443
Q ss_pred -eCCCCC
Q psy4832 720 -TDQCGT 725 (770)
Q Consensus 720 -~d~~G~ 725 (770)
.|.+|.
T Consensus 367 ~~dD~ge 373 (406)
T KOG2919|consen 367 PKDDNGE 373 (406)
T ss_pred CCccccc
Confidence 344443
No 208
>KOG0283|consensus
Probab=41.82 E-value=6.8e+02 Score=29.89 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=23.9
Q ss_pred cceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 222 SYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 222 ~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
.+.+.++|.|.+++.|++-.-.++|+.+.
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWs 438 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWS 438 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEee
Confidence 45678999999999999998888776664
No 209
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=40.83 E-value=4.3e+02 Score=27.28 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=21.2
Q ss_pred ccCcceEEEeCCCCeEEEEeCCEEEEE
Q psy4832 351 LQWPTGLALSPLDDSLHFIDDRVIFKL 377 (770)
Q Consensus 351 l~~P~gla~d~~~g~lyv~D~~~I~~i 377 (770)
+...+.|..+|.+..||+=|++.++..
T Consensus 218 ~~~~~~l~YNP~dk~LY~wd~G~~v~Y 244 (250)
T PF02191_consen 218 YGNISMLSYNPRDKKLYAWDNGYQVTY 244 (250)
T ss_pred cCceEeeeECCCCCeEEEEECCeEEEE
Confidence 446678999999999999997655544
No 210
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=40.12 E-value=59 Score=24.94 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=26.1
Q ss_pred ceEEEccCCcEEEEeC-----CC----eEEECCCCcEEEeecCC
Q psy4832 295 KGLAIKADKTMFIADG-----TN----IRVVSPEGIIHTLIGHH 329 (770)
Q Consensus 295 ~gIavd~~G~lYvaD~-----~~----Ir~id~~G~i~t~~g~~ 329 (770)
++|++.++|.|+++-. .+ |.+++++|.+-+-+|..
T Consensus 4 ~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLDttFg~~ 47 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLDTTFGTG 47 (55)
T ss_pred EEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCccCCcCCC
Confidence 4789999999988752 22 77889999887666543
No 211
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=39.10 E-value=1.5e+02 Score=26.17 Aligned_cols=54 Identities=11% Similarity=0.286 Sum_probs=31.3
Q ss_pred eeEEEEcCCCcEEEEcCCCceEEeeecCCcccCCCCcEEEeCCCCCcEEEEecCCceE
Q psy4832 503 ISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHI 560 (770)
Q Consensus 503 P~giav~~dG~lyvaD~~~~~I~~i~~~~~~~~~~g~~~i~~~~~~e~yvfd~~G~~~ 560 (770)
+..+.+.++|.|.+.|..+..|+.-... ...+.+.+.-.+++.+.+++..|+.+
T Consensus 55 ~~~l~l~~dGnLvl~~~~g~~vW~S~t~----~~~~~~~~~L~ddGnlvl~~~~~~~~ 108 (114)
T smart00108 55 SCTLTLQSDGNLVLYDGDGRVVWSSNTT----GANGNYVLVLLDDGNLVIYDSDGNFL 108 (114)
T ss_pred CEEEEEeCCCCEEEEeCCCCEEEEeccc----CCCCceEEEEeCCCCEEEECCCCCEE
Confidence 3567888899999988776666643222 12334444444444555566555544
No 212
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=37.98 E-value=1.6e+02 Score=29.86 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=33.3
Q ss_pred ceEEEEeecCCCCCCCccEEEEEEE-EceeEEEEEeeCCCCceEEEEEecccccCcee
Q psy4832 22 LSSILIHLTHNEIPASLVKVHVRVE-IEGSVHTKTYEADPNLTHVFTWNKRNVYKQKV 78 (770)
Q Consensus 22 ~~~~~~~~~~~~~p~~l~~v~~~~~-v~g~~~~~~~~~~p~~~~~~~W~~~d~y~~~v 78 (770)
.....+.| |..-..|.|.|. =+|.+ .++++. +.-.+.|.||++|.-|..+
T Consensus 112 ~~~~~~~l-----~~~a~~v~v~I~D~~G~v-V~t~~~-~~G~~~f~WDG~d~~G~~l 162 (223)
T PRK12813 112 PVTISPNP-----AADADKAELVVRDAAGAE-VARETV-PVGAGPVEWAGEDADGNPL 162 (223)
T ss_pred eeEEEEec-----cCCCceEEEEEEcCCCCE-EEEEee-CCCceeEEeCCcCCCCCcC
Confidence 44445554 677778888885 34444 344444 3456789999999988876
No 213
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=37.20 E-value=5.7e+02 Score=27.70 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=20.4
Q ss_pred EEEeCCCCeEEEEe-CCEEEEEc-CCCcEEE
Q psy4832 357 LALSPLDDSLHFID-DRVIFKLT-NDLKVKI 385 (770)
Q Consensus 357 la~d~~~g~lyv~D-~~~I~~i~-~~G~v~~ 385 (770)
.++. ++.||+.+ ++.|+.++ .+|++..
T Consensus 61 p~v~--~~~v~v~~~~g~v~a~d~~tG~~~W 89 (377)
T TIGR03300 61 PAVA--GGKVYAADADGTVVALDAETGKRLW 89 (377)
T ss_pred eEEE--CCEEEEECCCCeEEEEEccCCcEee
Confidence 4555 78999998 46899999 5787653
No 214
>KOG0306|consensus
Probab=35.62 E-value=8.4e+02 Score=29.17 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=45.8
Q ss_pred CeeEEEEcCCCCEEEEeCCCCceeeEEEEcCCC--cEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEE
Q psy4832 429 SLTALAFSPTGDLYIADIDARKVNALRVIDSTG--RMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISAL 506 (770)
Q Consensus 429 ~P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G--~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~gi 506 (770)
....+.|-|.-.+|++....+. |++.|.+- .|.++-| .......+
T Consensus 594 Svm~V~F~P~~~~FFt~gKD~k---vKqWDg~kFe~iq~L~~------------------------------H~~ev~cL 640 (888)
T KOG0306|consen 594 SVMSVQFLPKTHLFFTCGKDGK---VKQWDGEKFEEIQKLDG------------------------------HHSEVWCL 640 (888)
T ss_pred ceeEEEEcccceeEEEecCcce---EEeechhhhhhheeecc------------------------------chheeeee
Confidence 3567888888889999887664 55554321 2223322 23346789
Q ss_pred EEcCCCcEEEEcCCCceEEeeecC
Q psy4832 507 SVSPDGVVNVADQGSLHILALQHY 530 (770)
Q Consensus 507 av~~dG~lyvaD~~~~~I~~i~~~ 530 (770)
|+.|+|...|+-...+.||.....
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeecc
Confidence 999999999988777777766443
No 215
>KOG3567|consensus
Probab=35.49 E-value=50 Score=36.59 Aligned_cols=49 Identities=14% Similarity=0.302 Sum_probs=37.8
Q ss_pred eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 200 LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 200 ~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
+|.+++++.....- ..+..+|.-|.+|.+| .+|..|++|-..|++.|.+
T Consensus 446 ~ilvi~~~n~~~l~-~~g~~~fylphgl~~d-kdgf~~~tdvash~v~k~k 494 (501)
T KOG3567|consen 446 TILVIDPNNAAVLQ-SSGKNLFYLPHGLSID-KDGFYWVTDVASHQVFKLK 494 (501)
T ss_pred eEEEEcCcchhhhh-hccCCceecCCcceec-CCCcEEeecccchhhhhcc
Confidence 67788876322211 3346789999999999 6999999999999999884
No 216
>KOG0289|consensus
Probab=35.02 E-value=6.7e+02 Score=27.87 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=40.9
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEc
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVS 509 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~ 509 (770)
-+.++|.|||.||.+-+.+..+ +|+-+...-.+..|.|-. .....|+++
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~v-kiwdlks~~~~a~Fpght------------------------------~~vk~i~Fs 398 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVV-KIWDLKSQTNVAKFPGHT------------------------------GPVKAISFS 398 (506)
T ss_pred eEEeeEcCCceEEeccCCCceE-EEEEcCCccccccCCCCC------------------------------CceeEEEec
Confidence 4778899999999998877632 343332222222222210 124679999
Q ss_pred CCCcEEEE--cCCCceEEeeecC
Q psy4832 510 PDGVVNVA--DQGSLHILALQHY 530 (770)
Q Consensus 510 ~dG~lyva--D~~~~~I~~i~~~ 530 (770)
.+|...++ |.+.-++|-+++.
T Consensus 399 ENGY~Lat~add~~V~lwDLRKl 421 (506)
T KOG0289|consen 399 ENGYWLATAADDGSVKLWDLRKL 421 (506)
T ss_pred cCceEEEEEecCCeEEEEEehhh
Confidence 99965553 5555566655554
No 217
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=34.43 E-value=9.4e+02 Score=29.38 Aligned_cols=62 Identities=19% Similarity=0.271 Sum_probs=41.7
Q ss_pred eEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecC-CeeEEEEc
Q psy4832 431 TALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFT-SISALSVS 509 (770)
Q Consensus 431 ~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~-~P~giav~ 509 (770)
+.+|.+.+|.|-|+...+. ||.+|..|.- |-...+ .|. -..+|.|+
T Consensus 581 s~~aTt~~G~iavgs~~G~----IRLyd~~g~~---AKT~lp--------------------------~lG~pI~~iDvt 627 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGD----IRLYDRLGKR---AKTALP--------------------------GLGDPIIGIDVT 627 (794)
T ss_pred eEEEecCCceEEEEeCCCc----EEeecccchh---hhhcCC--------------------------CCCCCeeEEEec
Confidence 6788899999999988764 7888765521 111100 012 25789999
Q ss_pred CCCcEEEEcCCCceEE
Q psy4832 510 PDGVVNVADQGSLHIL 525 (770)
Q Consensus 510 ~dG~lyvaD~~~~~I~ 525 (770)
.||...+|...+..+.
T Consensus 628 ~DGkwilaTc~tyLlL 643 (794)
T PF08553_consen 628 ADGKWILATCKTYLLL 643 (794)
T ss_pred CCCcEEEEeecceEEE
Confidence 9999888876665443
No 218
>KOG0310|consensus
Probab=34.34 E-value=7.1e+02 Score=27.97 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCEEEEeC--ceEEEEcCCCc-EEEEeccCcccccce-eEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGPDGSLYVGDF--NLVRRLTPEGN-VFTVLQLSATQVSYQ-YYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~dG~lyv~d~--~~I~~i~~~G~-v~~~~~~~~~~~~~p-~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
..++.+=.||.|+-+-. +.|+.+|..-+ +...+. .-..| .-+-|.|.++.++++-.+ .++.++.
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~----ah~apv~~~~f~~~d~t~l~s~sD-d~v~k~~ 138 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLY----AHQAPVHVTKFSPQDNTMLVSGSD-DKVVKYW 138 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHh----hccCceeEEEecccCCeEEEecCC-CceEEEE
Confidence 45677778999887643 68888873321 111111 11234 345567766777766555 4555553
No 219
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=34.04 E-value=2e+02 Score=30.32 Aligned_cols=51 Identities=24% Similarity=0.143 Sum_probs=32.5
Q ss_pred CCCCCccEEEEEEEEceeEEEEEee--CC--CCceEEEEEecccccCceee-eeEE
Q psy4832 33 EIPASLVKVHVRVEIEGSVHTKTYE--AD--PNLTHVFTWNKRNVYKQKVY-GVAQ 83 (770)
Q Consensus 33 ~~p~~l~~v~~~~~v~g~~~~~~~~--~~--p~~~~~~~W~~~d~y~~~v~-g~~~ 83 (770)
.+|..-..|.|.|.=+--...++++ +. +.-.++|.|||+|.-|.++- |.-.
T Consensus 160 ~~~~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt 215 (295)
T PRK05842 160 KIDASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYK 215 (295)
T ss_pred cccccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceE
Confidence 3455556777777544444445554 33 23478999999999998873 4333
No 220
>KOG0643|consensus
Probab=33.28 E-value=5.8e+02 Score=26.58 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=25.0
Q ss_pred cccCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC
Q psy4832 425 MDLGSLTALAFSPTGDLYIADIDARKVNALRVIDS 459 (770)
Q Consensus 425 ~~l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~ 459 (770)
..|.-.+.|||.|+|..|-+-....-| |+..+++
T Consensus 285 GHFGPINsvAfhPdGksYsSGGEDG~V-R~h~Fd~ 318 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDGKSYSSGGEDGYV-RLHHFDS 318 (327)
T ss_pred ccccCcceeEECCCCcccccCCCCceE-EEEEecc
Confidence 446667999999999999987766543 5555554
No 221
>KOG0273|consensus
Probab=32.71 E-value=7.6e+02 Score=27.76 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=78.7
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCCCcEEEEeccCcccccce-eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccC
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPEGNVFTVLQLSATQVSYQ-YYLALSPADGHLYISDAEKHQILRVLSLESVAD 257 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v~~~~~~~~~~~~~p-~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~ 257 (770)
.-++|+...+|++.++-. +.+|.++.+|.....++.- ..| ..|-.. ..|+-.++-.-.+++..++.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~H----kgPI~slKWn-k~G~yilS~~vD~ttilwd~------ 305 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQH----KGPIFSLKWN-KKGTYILSGGVDGTTILWDA------ 305 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhcc----CCceEEEEEc-CCCCEEEeccCCccEEEEec------
Confidence 457889989999888765 5899999999887766532 223 456666 35555555555566666642
Q ss_pred CCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEcc-CCcEEEE-eCCC---eEEECCCCcEEEeecCCCCC
Q psy4832 258 PSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKA-DKTMFIA-DGTN---IRVVSPEGIIHTLIGHHKHH 332 (770)
Q Consensus 258 ~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~-~G~lYva-D~~~---Ir~id~~G~i~t~~g~~~~~ 332 (770)
..|.+...+- |..--++.|+- +..=|++ +... +.+++.++-+.++.|...
T Consensus 306 ~~g~~~q~f~-----------------------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-- 360 (524)
T KOG0273|consen 306 HTGTVKQQFE-----------------------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG-- 360 (524)
T ss_pred cCceEEEeee-----------------------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--
Confidence 2233322221 11111333332 1223333 2322 667889999999998532
Q ss_pred CCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe
Q psy4832 333 NIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID 370 (770)
Q Consensus 333 ~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D 370 (770)
.-.+|.++| .|.|..+-
T Consensus 361 --------------------~V~alk~n~-tg~LLaS~ 377 (524)
T KOG0273|consen 361 --------------------EVNALKWNP-TGSLLASC 377 (524)
T ss_pred --------------------ceEEEEECC-CCceEEEe
Confidence 245788888 88877764
No 222
>KOG0645|consensus
Probab=32.09 E-value=6.1e+02 Score=26.46 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=89.8
Q ss_pred CcceEEEccC-CcEEEEeCCC--eEEECCCC----cEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCe
Q psy4832 293 HPKGLAIKAD-KTMFIADGTN--IRVVSPEG----IIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDS 365 (770)
Q Consensus 293 ~P~gIavd~~-G~lYvaD~~~--Ir~id~~G----~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~ 365 (770)
.-..+|++|. |.|+-+.+.. ||..+..+ ...+++.. ..-+.-..+|..| .|+
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~--------------------~hkrsVRsvAwsp-~g~ 74 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD--------------------GHKRSVRSVAWSP-HGR 74 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc--------------------cchheeeeeeecC-CCc
Confidence 3557888886 7766555443 77766552 22222211 1223466899999 888
Q ss_pred EEEEeC--CEEEEE-cCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCCeeEEEEcCCCCEE
Q psy4832 366 LHFIDD--RVIFKL-TNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGDLY 442 (770)
Q Consensus 366 lyv~D~--~~I~~i-~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~ly 442 (770)
+..+-+ ..+... ..++.+..++-.-.+ =+...++|++++|++.
T Consensus 75 ~La~aSFD~t~~Iw~k~~~efecv~~lEGH----------------------------------EnEVK~Vaws~sG~~L 120 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEFECVATLEGH----------------------------------ENEVKCVAWSASGNYL 120 (312)
T ss_pred EEEEeeccceEEEeecCCCceeEEeeeecc----------------------------------ccceeEEEEcCCCCEE
Confidence 555442 222222 245555544321111 1336899999999999
Q ss_pred EEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCCc
Q psy4832 443 IADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGSL 522 (770)
Q Consensus 443 VaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~~ 522 (770)
.+.+..+.| .|..++.++++..++=-. ...+....+..-|.-.|+++-...+
T Consensus 121 ATCSRDKSV-WiWe~deddEfec~aVL~---------------------------~HtqDVK~V~WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 121 ATCSRDKSV-WIWEIDEDDEFECIAVLQ---------------------------EHTQDVKHVIWHPTEDLLFSCSYDN 172 (312)
T ss_pred EEeeCCCeE-EEEEecCCCcEEEEeeec---------------------------cccccccEEEEcCCcceeEEeccCC
Confidence 998888765 678888888775543111 1123345677778667777777666
Q ss_pred eEEeee
Q psy4832 523 HILALQ 528 (770)
Q Consensus 523 ~I~~i~ 528 (770)
.|+...
T Consensus 173 TIk~~~ 178 (312)
T KOG0645|consen 173 TIKVYR 178 (312)
T ss_pred eEEEEe
Confidence 776443
No 223
>KOG1408|consensus
Probab=31.80 E-value=3.7e+02 Score=31.74 Aligned_cols=35 Identities=29% Similarity=0.264 Sum_probs=20.1
Q ss_pred cceEEEeCCCCeEEEEe--CCEEEEEc-CCCc-EEEEecC
Q psy4832 354 PTGLALSPLDDSLHFID--DRVIFKLT-NDLK-VKIVAGI 389 (770)
Q Consensus 354 P~gla~d~~~g~lyv~D--~~~I~~i~-~~G~-v~~vaG~ 389 (770)
-.+|+++| +-.+.++- ...|+.++ .+|+ ++.+-|.
T Consensus 599 lYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs 637 (1080)
T KOG1408|consen 599 LYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGS 637 (1080)
T ss_pred EEEeeeCC-CcceEEEEecccceEEEeccccceeeeeccc
Confidence 35788888 55444433 45566666 4554 5555554
No 224
>KOG3881|consensus
Probab=31.39 E-value=4.8e+02 Score=28.48 Aligned_cols=102 Identities=5% Similarity=-0.075 Sum_probs=58.3
Q ss_pred cceeEEEEeCC-CCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEc
Q psy4832 222 SYQYYLALSPA-DGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIK 300 (770)
Q Consensus 222 ~~p~~lav~p~-~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd 300 (770)
.++.++.|-+. ...-+++-+..|+++.++ +..--..|+-. +. .-+.-..++..
T Consensus 203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YD-------t~~qRRPV~~f-----d~--------------~E~~is~~~l~ 256 (412)
T KOG3881|consen 203 VWITDIRFLEGSPNYKFATITRYHQVRLYD-------TRHQRRPVAQF-----DF--------------LENPISSTGLT 256 (412)
T ss_pred eeeccceecCCCCCceEEEEecceeEEEec-------CcccCcceeEe-----cc--------------ccCcceeeeec
Confidence 45677777641 157788888889999884 22211112110 00 00112467778
Q ss_pred cCCc-EEEEeCCC-eEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEE
Q psy4832 301 ADKT-MFIADGTN-IRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFI 369 (770)
Q Consensus 301 ~~G~-lYvaD~~~-Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~ 369 (770)
+.|+ ||++++.. +..||..+......+..+. -..+++|..+| ...+..+
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-------------------tGsirsih~hp-~~~~las 307 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-------------------TGSIRSIHCHP-THPVLAS 307 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCc-------------------cCCcceEEEcC-CCceEEe
Confidence 8777 99998765 8899977644332222111 12577888887 5554443
No 225
>KOG3881|consensus
Probab=30.08 E-value=4.3e+02 Score=28.81 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=44.7
Q ss_pred CcceEEEeCCC--CeEEEEe--CCEEEEEcCCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccC
Q psy4832 353 WPTGLALSPLD--DSLHFID--DRVIFKLTNDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLG 428 (770)
Q Consensus 353 ~P~gla~d~~~--g~lyv~D--~~~I~~i~~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 428 (770)
|++++.|-+ . .+-|++- .|.++.+|+..+=+.|+ ++... =+
T Consensus 204 W~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~-----~fd~~-----------------------------E~ 248 (412)
T KOG3881|consen 204 WITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVA-----QFDFL-----------------------------EN 248 (412)
T ss_pred eeccceecC-CCCCceEEEEecceeEEEecCcccCccee-----Eeccc-----------------------------cC
Confidence 889999986 4 4455554 58888888653322222 11000 01
Q ss_pred CeeEEEEcCCCC-EEEEeCCCCceeeEEEEcCCCcE
Q psy4832 429 SLTALAFSPTGD-LYIADIDARKVNALRVIDSTGRM 463 (770)
Q Consensus 429 ~P~giavd~~G~-lyVaD~~~~ri~~i~~i~~~G~i 463 (770)
..+.++..|+|+ ||++++... +..+|..+..
T Consensus 249 ~is~~~l~p~gn~Iy~gn~~g~----l~~FD~r~~k 280 (412)
T KOG3881|consen 249 PISSTGLTPSGNFIYTGNTKGQ----LAKFDLRGGK 280 (412)
T ss_pred cceeeeecCCCcEEEEecccch----hheecccCce
Confidence 136778889887 888888764 6778765543
No 226
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=29.94 E-value=1.6e+02 Score=30.45 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=34.2
Q ss_pred CCCccEEEEEEE-EceeEE-EEEeeCCCCceEEEEEecccccCcee-eeeEEEEE
Q psy4832 35 PASLVKVHVRVE-IEGSVH-TKTYEADPNLTHVFTWNKRNVYKQKV-YGVAQCKI 86 (770)
Q Consensus 35 p~~l~~v~~~~~-v~g~~~-~~~~~~~p~~~~~~~W~~~d~y~~~v-~g~~~a~v 86 (770)
|..-..|.|.|. =+|..- +..+.+.+.-.+.|.||++|.-|.++ -|.-...|
T Consensus 137 ~~~a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v 191 (259)
T PRK12812 137 PEDSDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKA 191 (259)
T ss_pred CCcCceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEE
Confidence 666677888885 445543 23344555567899999999999876 34333333
No 227
>smart00284 OLF Olfactomedin-like domains.
Probab=29.94 E-value=6.4e+02 Score=26.09 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=19.9
Q ss_pred CcceEEEeCCCCeEEEEeCCEEEEEc
Q psy4832 353 WPTGLALSPLDDSLHFIDDRVIFKLT 378 (770)
Q Consensus 353 ~P~gla~d~~~g~lyv~D~~~I~~i~ 378 (770)
.-+.|..+|.+..||+=|++.++..+
T Consensus 225 ~~s~l~YNP~d~~LY~wdng~~l~Y~ 250 (255)
T smart00284 225 YISMLDYNPNDRKLYAWNNGHLVHYD 250 (255)
T ss_pred cceeceeCCCCCeEEEEeCCeEEEEE
Confidence 34568999989999999987665543
No 228
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=29.62 E-value=1.3e+02 Score=30.61 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=32.7
Q ss_pred CCCccEEEEEEE-EceeEE-EEEeeCCCCceEEEEEecccccCcee
Q psy4832 35 PASLVKVHVRVE-IEGSVH-TKTYEADPNLTHVFTWNKRNVYKQKV 78 (770)
Q Consensus 35 p~~l~~v~~~~~-v~g~~~-~~~~~~~p~~~~~~~W~~~d~y~~~v 78 (770)
|..-..|.|.|. =+|.+- +..+.+.+.-.+.|.||++|.-|.++
T Consensus 125 ~~~a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~ 170 (230)
T PRK12633 125 QGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPL 170 (230)
T ss_pred CCcCcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcC
Confidence 666677888885 566664 34465666667999999999988875
No 229
>PRK13616 lipoprotein LpqB; Provisional
Probab=29.45 E-value=9.9e+02 Score=28.12 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=23.5
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEe
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDF 466 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~ 466 (770)
+..++.-.++.|+|....... .+..++.+|...+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~--~v~~v~vDG~~~~~ 533 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEH--PVWYVNLDGSNSDA 533 (591)
T ss_pred cccceEecCCEEEEEecCCCC--ceEEEecCCccccc
Confidence 466778788888887665442 46777777765443
No 230
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=28.99 E-value=2.5e+02 Score=24.85 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=31.4
Q ss_pred eeEEEEcCCCcEEEEcCCCceEEeeecCCcccCCCCcEEEeCCCCCcEEEEecCCceEE
Q psy4832 503 ISALSVSPDGVVNVADQGSLHILALQHYLPTHDEHGEFKIPYPATNEIYVFNRYGQHIT 561 (770)
Q Consensus 503 P~giav~~dG~lyvaD~~~~~I~~i~~~~~~~~~~g~~~i~~~~~~e~yvfd~~G~~~~ 561 (770)
+..+.+..+|+|++.|..+..|+.-.... ..+.+...-.+++.+.+++..|+.++
T Consensus 56 ~~~l~l~~dGnLvl~~~~g~~vW~S~~~~----~~~~~~~~L~ddGnlvl~~~~~~~~W 110 (116)
T cd00028 56 SCTLTLQSDGNLVIYDGSGTVVWSSNTTR----VNGNYVLVLLDDGNLVLYDSDGNFLW 110 (116)
T ss_pred CEEEEEecCCCeEEEcCCCcEEEEecccC----CCCceEEEEeCCCCEEEECCCCCEEE
Confidence 55688888999999987766665432211 12334433444445555555554443
No 231
>KOG0646|consensus
Probab=28.29 E-value=8.8e+02 Score=27.15 Aligned_cols=28 Identities=21% Similarity=0.498 Sum_probs=19.9
Q ss_pred CeeEEEEcCCCcEEEEcC--CCceEEeeec
Q psy4832 502 SISALSVSPDGVVNVADQ--GSLHILALQH 529 (770)
Q Consensus 502 ~P~giav~~dG~lyvaD~--~~~~I~~i~~ 529 (770)
..+.+|++-||+|.++-. ++.+||.+.+
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 578899999999888743 4456665544
No 232
>PRK04043 tolB translocation protein TolB; Provisional
Probab=28.16 E-value=8.8e+02 Score=27.08 Aligned_cols=12 Identities=8% Similarity=0.011 Sum_probs=6.4
Q ss_pred EEeCCCCEEEEE
Q psy4832 653 DYDHLDRLSVRK 664 (770)
Q Consensus 653 ~YD~~grlv~~~ 664 (770)
.+.+.|+.++..
T Consensus 325 ~~SPDG~~Ia~~ 336 (419)
T PRK04043 325 SVSTYKNYIVYS 336 (419)
T ss_pred eECCCCCEEEEE
Confidence 555666655433
No 233
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=27.48 E-value=2.3e+02 Score=30.28 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=48.4
Q ss_pred ccceeEEEEeCCCCcEEEEeCCCc-----EEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccccccccCcc
Q psy4832 221 VSYQYYLALSPADGHLYISDAEKH-----QILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPK 295 (770)
Q Consensus 221 ~~~p~~lav~p~~g~lyvsd~~~~-----~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~ 295 (770)
-.+|+.|+-- .+|++|++.-..+ +|+-+. .|+-..++++.-.-...|+.-...|| -.
T Consensus 182 GTf~yNmgAl-~nGH~Y~asLSG~~~SPLKiY~w~------tPts~PevIa~inV~~I~gAg~RhGD-----------n~ 243 (442)
T PF15416_consen 182 GTFSYNMGAL-VNGHSYLASLSGGKASPLKIYYWE------TPTSAPEVIADINVGDIPGAGNRHGD-----------NF 243 (442)
T ss_pred cccccchhhh-cCCeEEEEeccCCCCCceEEEEec------CCCCCceEEEeeeeccCcccccccCc-----------ce
Confidence 3457777766 4899999976533 566664 56666777764333222332223333 23
Q ss_pred eEEEccCCc--EEEEeCCC--eEEECCC
Q psy4832 296 GLAIKADKT--MFIADGTN--IRVVSPE 319 (770)
Q Consensus 296 gIavd~~G~--lYvaD~~~--Ir~id~~ 319 (770)
.+.+|.+|+ +||.|... |.+++-.
T Consensus 244 S~nlD~nGnGyiFFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 244 SLNLDENGNGYIFFGDNAATNILRFTVS 271 (442)
T ss_pred eEEeccCCceEEEecCCccceEEEEEcc
Confidence 678888665 88887543 6666533
No 234
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=27.30 E-value=55 Score=30.18 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=13.2
Q ss_pred EEEEEeCCCCEEEEEc
Q psy4832 650 VTYDYDHLDRLSVRKD 665 (770)
Q Consensus 650 ~~y~YD~~grlv~~~d 665 (770)
..|.||+.||++.++-
T Consensus 64 Y~Y~YD~~grl~eK~a 79 (132)
T PF12930_consen 64 YNYKYDDNGRLTEKEA 79 (132)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEeeeee
Confidence 4799999999997653
No 235
>KOG1517|consensus
Probab=26.73 E-value=1.4e+03 Score=28.85 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=89.1
Q ss_pred CceEEEEcC-CCCEEEEeC-ceEEEEc-CCCcEEEEeccCcccccceeEEEEe-CCCCcEEEEeCCCcEEEEEeccCCcc
Q psy4832 181 TPVALTSGP-DGSLYVGDF-NLVRRLT-PEGNVFTVLQLSATQVSYQYYLALS-PADGHLYISDAEKHQILRVLSLESVA 256 (770)
Q Consensus 181 ~P~~la~~~-dG~lyv~d~-~~I~~i~-~~G~v~~~~~~~~~~~~~p~~lav~-p~~g~lyvsd~~~~~I~~i~~~~~~~ 256 (770)
.|.-+.+.| .--|+++|. .+|+.++ .+|+...-+.++.....+...|.+- ..+..|.++-+.++.|+.++...
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~--- 1142 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA--- 1142 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc---
Confidence 477778887 566888885 5777776 5677777776555555555666653 23456777777777777665422
Q ss_pred CCCCcEEEEECCCccccCCCCCCcCCCccccccccc--CcceEEEcc---CCcEEEEeCCC-eEEECCCCcEE-EeecCC
Q psy4832 257 DPSINWEVAVGSGERCIPGDETNCGDNGPALAAKLS--HPKGLAIKA---DKTMFIADGTN-IRVVSPEGIIH-TLIGHH 329 (770)
Q Consensus 257 ~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~--~P~gIavd~---~G~lYvaD~~~-Ir~id~~G~i~-t~~g~~ 329 (770)
+..++.+.|.+-.. - ...+. .-.|+.+|- .|.||++-..+ ||.-|.+.... .-+..+
T Consensus 1143 ~~~~~~eLVTaw~~--------L--------s~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~ 1206 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSS--------L--------SDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG 1206 (1387)
T ss_pred cccCCceeEEeecc--------c--------cccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC
Confidence 22245555543110 0 00111 122466653 67888876445 77777665322 112111
Q ss_pred CCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--CCEEEEEc
Q psy4832 330 KHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--DRVIFKLT 378 (770)
Q Consensus 330 ~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--~~~I~~i~ 378 (770)
.. ..++.|.-+-..|+++++- .+.|+.+|
T Consensus 1207 s~--------------------t~vTaLS~~~~~gn~i~AGfaDGsvRvyD 1237 (1387)
T KOG1517|consen 1207 SS--------------------TLVTALSADLVHGNIIAAGFADGSVRVYD 1237 (1387)
T ss_pred CC--------------------ccceeecccccCCceEEEeecCCceEEee
Confidence 11 1355566555467888775 56666665
No 236
>PTZ00421 coronin; Provisional
Probab=26.13 E-value=1e+03 Score=27.23 Aligned_cols=109 Identities=9% Similarity=0.063 Sum_probs=61.0
Q ss_pred ceEEEEcC-CCCEEEEeC--ceEEEEcCC-CcE-------EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEe
Q psy4832 182 PVALTSGP-DGSLYVGDF--NLVRRLTPE-GNV-------FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVL 250 (770)
Q Consensus 182 P~~la~~~-dG~lyv~d~--~~I~~i~~~-G~v-------~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~ 250 (770)
-.++++.| +++++++-. +.|+.++.. +.. ...+ ...-.....++++|..++++++-..++.|+.++
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L---~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL---QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe---cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 46889998 777665433 466666532 211 1111 111233568999986667777766677777664
Q ss_pred ccCCccCCCCcEE-EEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC--eEEECCC-Cc
Q psy4832 251 SLESVADPSINWE-VAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN--IRVVSPE-GI 321 (770)
Q Consensus 251 ~~~~~~~~~g~~~-~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~--Ir~id~~-G~ 321 (770)
.. .+... .+.+. -.....|++.++|.+.++-... |+.+|.. +.
T Consensus 155 l~------tg~~~~~l~~h----------------------~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 155 VE------RGKAVEVIKCH----------------------SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred CC------CCeEEEEEcCC----------------------CCceEEEEEECCCCEEEEecCCCEEEEEECCCCc
Confidence 21 12221 11110 1124578899999876664433 8888853 43
No 237
>PF06661 VirE3: VirE3; InterPro: IPR009550 This family represents a conserved region within Agrobacterium tumefaciens VirE3. Agrobacterium tumefaciens (a plant pathogen) has a tumour-inducing (Ti) plasmid of which part, the transfer (T)-region, is transferred to plant cells during the infection process. Vir proteins mediate the processing of the T-region and the transfer of a single-stranded (ss) DNA copy of this region, the T-strand, into the recipient cells. VirE3 is a translocated effector protein, but its specific role has not been established [].
Probab=26.00 E-value=17 Score=36.95 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=13.5
Q ss_pred CCceEEEEEeCCCCEEE
Q psy4832 646 GRFDVTYDYDHLDRLSV 662 (770)
Q Consensus 646 ~g~~~~y~YD~~grlv~ 662 (770)
+.++.+|+||+.|.|+.
T Consensus 106 GrFeekwerDE~G~L~r 122 (317)
T PF06661_consen 106 GRFEEKWERDENGQLIR 122 (317)
T ss_pred cchhhhheecCCCceEE
Confidence 44677899999999984
No 238
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.38 E-value=1.7e+02 Score=29.49 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=36.6
Q ss_pred cccCCCCeEEEEecCCCCCCceEEEEeecCCCCCCCccEEEEEEE-EceeEEEEEeeCCCCceEEEEEeccc
Q psy4832 2 IQIPGSDLHLTYRSSLSSGYLSSILIHLTHNEIPASLVKVHVRVE-IEGSVHTKTYEADPNLTHVFTWNKRN 72 (770)
Q Consensus 2 ~~i~gt~~~l~y~s~r~~g~~~~~~~~~~~~~~p~~l~~v~~~~~-v~g~~~~~~~~~~p~~~~~~~W~~~d 72 (770)
+.++|..+.| . +-.....+.| |..-..|.|.|. -.|..-+..+.+.+.-.++|.||+++
T Consensus 98 V~~~g~~~~l---~----~~~~~~~~~L-----~~~a~~v~v~I~D~~G~v~t~~l~~~~aG~~~f~WDG~~ 157 (218)
T PRK09619 98 VMVESHEITL---G----EDPVAGRLTL-----KHPAPTLTLHITDILGQEKKIDLGKQPAGPVNFTLDPAA 157 (218)
T ss_pred EEEecceEEe---c----CCeeEEEEec-----CCcCcEEEEEEEeCCCCEEEEecCCcCCCceeEEECCCC
Confidence 3456665554 1 1233445554 666667888884 68886333344556668999999986
No 239
>KOG2096|consensus
Probab=24.84 E-value=8.7e+02 Score=25.94 Aligned_cols=68 Identities=7% Similarity=0.033 Sum_probs=39.4
Q ss_pred CceEEEEcCCCCEEEEeC--ceEEEEcCCCcE---EEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 181 TPVALTSGPDGSLYVGDF--NLVRRLTPEGNV---FTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 181 ~P~~la~~~dG~lyv~d~--~~I~~i~~~G~v---~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
.-.+|++.+||.-+.+-. ..||.++.+.-. -..+. ..-...+|.-++|.|.-..+.|+-...+.++.+
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhh-ccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 346788888887665433 345555433200 01111 023456899999998666777776665665555
No 240
>KOG2919|consensus
Probab=24.65 E-value=8.9e+02 Score=25.96 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=21.4
Q ss_pred ccCcceEEEeCCCCe-EEEEeCCEEEEEcC
Q psy4832 351 LQWPTGLALSPLDDS-LHFIDDRVIFKLTN 379 (770)
Q Consensus 351 l~~P~gla~d~~~g~-lyv~D~~~I~~i~~ 379 (770)
+.....|+|+| ||. ||.-++++|+.++.
T Consensus 158 ~taAhsL~Fs~-DGeqlfaGykrcirvFdt 186 (406)
T KOG2919|consen 158 YTAAHSLQFSP-DGEQLFAGYKRCIRVFDT 186 (406)
T ss_pred hhhheeEEecC-CCCeEeecccceEEEeec
Confidence 44566899999 775 66667899999884
No 241
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=23.60 E-value=1.2e+03 Score=27.01 Aligned_cols=301 Identities=14% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCEEEEeC-ceEEEEc-CCCcEEEEeccCcccccce--------eEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCC
Q psy4832 190 DGSLYVGDF-NLVRRLT-PEGNVFTVLQLSATQVSYQ--------YYLALSPADGHLYISDAEKHQILRVLSLESVADPS 259 (770)
Q Consensus 190 dG~lyv~d~-~~I~~i~-~~G~v~~~~~~~~~~~~~p--------~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~ 259 (770)
+|.||+++. +.|..+| .+|++.-.+......-..+ .++++. ++.||++... ++++.++ -.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~d-g~l~ALD------a~T 139 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLD-ARLVALD------AKT 139 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCC-CEEEEEE------CCC
Q ss_pred CcEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeC-------CCeEEEC-CCCcEEEeecCCCC
Q psy4832 260 INWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADG-------TNIRVVS-PEGIIHTLIGHHKH 331 (770)
Q Consensus 260 g~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~-------~~Ir~id-~~G~i~t~~g~~~~ 331 (770)
|++.--...... ......-..-.+. ++.||+... +.|+.+| .+|++.--.-....
T Consensus 140 Gk~~W~~~~~~~----------------~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 140 GKVVWSKKNGDY----------------KAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred CCEEeecccccc----------------cccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Q ss_pred CCCcCCCccCCCcccccccccCcc--------------------------------eEEEeCCCCeEEEEeCC-------
Q psy4832 332 HNIWSPFNCHRSFPASTAQLQWPT--------------------------------GLALSPLDDSLHFIDDR------- 372 (770)
Q Consensus 332 ~~~~~p~~~~~~~~~~~~~l~~P~--------------------------------gla~d~~~g~lyv~D~~------- 372 (770)
. |. .+++|+..+.||+.-.+
T Consensus 203 ~---------------------~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~ 261 (527)
T TIGR03075 203 D---------------------MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSH 261 (527)
T ss_pred C---------------------cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCC
Q ss_pred ----------EEEEEc-CCCcEEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCC--------eeEE
Q psy4832 373 ----------VIFKLT-NDLKVKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGS--------LTAL 433 (770)
Q Consensus 373 ----------~I~~i~-~~G~v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--------P~gi 433 (770)
.|+.++ ..|+++...-.-.+-....+.. ....|.. |-=+
T Consensus 262 ~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~----------------------~~p~l~d~~~~G~~~~~v~ 319 (527)
T TIGR03075 262 LRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGV----------------------NEMILFDLKKDGKPRKLLA 319 (527)
T ss_pred CCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCC----------------------CCcEEEEeccCCcEEEEEE
Q ss_pred EEcCCCCEEEEeCCCCce----------eeEEEEc-----------------CCCcEEEeecCccCCCCCcCCCCCcccc
Q psy4832 434 AFSPTGDLYIADIDARKV----------NALRVID-----------------STGRMFDFAGRWQSDKKNCNTTNCAEFE 486 (770)
Q Consensus 434 avd~~G~lyVaD~~~~ri----------~~i~~i~-----------------~~G~i~~~aG~~~~~~~~~~~~~~~~~~ 486 (770)
...++|.+|+-|..+.+. +....++ +.+.-+.++.....+.
T Consensus 320 ~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~------------ 387 (527)
T TIGR03075 320 HADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGK------------ 387 (527)
T ss_pred EeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCC------------
Q ss_pred cCccCcccccceecCCeeEEEEcC-CCcEEEEcCC--------------------------------CceEEeeecCC--
Q psy4832 487 KNSKETLLTSTARFTSISALSVSP-DGVVNVADQG--------------------------------SLHILALQHYL-- 531 (770)
Q Consensus 487 ~~~~d~~~~~~~~l~~P~giav~~-dG~lyvaD~~--------------------------------~~~I~~i~~~~-- 531 (770)
.-.++|+|| .|.+|+.-.. .+.|..++...
T Consensus 388 ---------------~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk 452 (527)
T TIGR03075 388 ---------------NWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGK 452 (527)
T ss_pred ---------------CCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCc
Q ss_pred -------------cccCCCCcEEEeCCCCCcEEEEe-cCCceEEEEcCCCCCcEEEEEecCCCCCCceEEEE
Q psy4832 532 -------------PTHDEHGEFKIPYPATNEIYVFN-RYGQHITTRDMTSGKPRYSFLYSKNTSFGKLSTIT 589 (770)
Q Consensus 532 -------------~~~~~~g~~~i~~~~~~e~yvfd-~~G~~~~t~d~~tg~~~y~~~Yd~~~~~G~L~~vt 589 (770)
......+..-+.....+.++.+| ..|+.+....+-++..---.+|..+ |++..+.
T Consensus 453 ~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~---G~qYv~~ 521 (527)
T TIGR03075 453 IVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQD---GKQYVAV 521 (527)
T ss_pred eeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeC---CEEEEEE
No 242
>smart00284 OLF Olfactomedin-like domains.
Probab=22.83 E-value=8.6e+02 Score=25.17 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=20.4
Q ss_pred eEEEEcCCCC--EEEEeCCCCceeeEEEEcCC
Q psy4832 431 TALAFSPTGD--LYIADIDARKVNALRVIDST 460 (770)
Q Consensus 431 ~giavd~~G~--lyVaD~~~~ri~~i~~i~~~ 460 (770)
-.+|+|.+|- ||-++..++.| .|.|+++.
T Consensus 131 iDlAvDE~GLWvIYat~~~~g~i-vvSkLnp~ 161 (255)
T smart00284 131 IDLAVDENGLWVIYATEQNAGKI-VISKLNPA 161 (255)
T ss_pred EEEEEcCCceEEEEeccCCCCCE-EEEeeCcc
Confidence 5688998885 66666665655 46788873
No 243
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.50 E-value=1.1e+03 Score=26.13 Aligned_cols=233 Identities=20% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEcCCCC--EEEEeCc---eEEEEcCCCcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCC
Q psy4832 186 TSGPDGS--LYVGDFN---LVRRLTPEGNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSI 260 (770)
Q Consensus 186 a~~~dG~--lyv~d~~---~I~~i~~~G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g 260 (770)
++.+||+ ||.++.. .+..++.+....+-+. ...-....|..++|.+..||....+ +++++++ -.+.
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT--dg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vd------L~T~ 112 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT--DGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVD------LDTL 112 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEE------TTT-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc--cCCCCCccceEEecCCCeEEEEECC-CeEEEEE------CCcC
Q ss_pred cEEEEECCCccccCCCCCCcCCCcccccccccCcceEEEccCCcEEEEeCCC------------eEEEC-CCCcEEEeec
Q psy4832 261 NWEVAVGSGERCIPGDETNCGDNGPALAAKLSHPKGLAIKADKTMFIADGTN------------IRVVS-PEGIIHTLIG 327 (770)
Q Consensus 261 ~~~~vaG~g~~~~p~~~~~~g~~g~~~~a~l~~P~gIavd~~G~lYvaD~~~------------Ir~id-~~G~i~t~~g 327 (770)
....+.-... ...|.+.-...+.-..--|+.+.........+... |..|+ ..|.+.++.-
T Consensus 113 e~~~vy~~p~-------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~ 185 (386)
T PF14583_consen 113 EERVVYEVPD-------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE 185 (386)
T ss_dssp -EEEEEE--T-------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE
T ss_pred cEEEEEECCc-------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe
Q ss_pred CCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEEEe--------CCEEEEEcCCCcEEEEecCCCCCCCCCCC
Q psy4832 328 HHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHFID--------DRVIFKLTNDLKVKIVAGIPLHCRTGDKD 399 (770)
Q Consensus 328 ~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv~D--------~~~I~~i~~~G~v~~vaG~~~~~~~~~~~ 399 (770)
... |-.-+-++|.+..+..-- ..||+.|+.+|.-..-.-
T Consensus 186 ~~~----------------------wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~----------- 232 (386)
T PF14583_consen 186 DTD----------------------WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH----------- 232 (386)
T ss_dssp ESS-----------------------EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----------
T ss_pred cCc----------------------cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-----------
Q ss_pred CccccccccccccccccCCcccccccccCCeeEEEEcCCCC--EEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCC
Q psy4832 400 KRDFKDKQSKTKKSTVQDDSVRASNMDLGSLTALAFSPTGD--LYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKN 476 (770)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~P~giavd~~G~--lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~ 476 (770)
.+.......-=.+.++|. .|++-.....-..|..+++ ++.-..+.-.+
T Consensus 233 -----------------------~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p------ 283 (386)
T PF14583_consen 233 -----------------------RRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP------ 283 (386)
T ss_dssp --------------------------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-------
T ss_pred -----------------------cCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC------
Q ss_pred cCCCCCcccccCccCcccccceecCCeeEEEEcCCCcEEEEcCCC
Q psy4832 477 CNTTNCAEFEKNSKETLLTSTARFTSISALSVSPDGVVNVADQGS 521 (770)
Q Consensus 477 ~~~~~~~~~~~~~~d~~~~~~~~l~~P~giav~~dG~lyvaD~~~ 521 (770)
.-+.+-.++||.|+|.|.+.
T Consensus 284 -------------------------~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 284 -------------------------WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -------------------------SEEEEEE-TTSSEEEEEE--
T ss_pred -------------------------ceeeeEEcCCCCEEEecCCC
No 244
>KOG0310|consensus
Probab=21.97 E-value=1.2e+03 Score=26.37 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=79.2
Q ss_pred CCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCCCcccccccccCceE-EEEcC-CCCEEEEeC-ceEEEE-cCC
Q psy4832 132 EGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDCDGVARDARLLTPVA-LTSGP-DGSLYVGDF-NLVRRL-TPE 207 (770)
Q Consensus 132 ~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~~g~~~~~~l~~P~~-la~~~-dG~lyv~d~-~~I~~i-~~~ 207 (770)
.++-+..||..+-.-+ ..+.|.++.-+ . +.+-- ...+ =..|.- +-+.| ++.++++-. ..++++ +.+
T Consensus 72 ~s~~fR~DG~LlaaGD-~sG~V~vfD~k-~-r~iLR------~~~a-h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s 141 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGD-ESGHVKVFDMK-S-RVILR------QLYA-HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS 141 (487)
T ss_pred eEEEeecCCeEEEccC-CcCcEEEeccc-c-HHHHH------HHhh-ccCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence 3455667786444445 66667666521 1 11100 0000 012333 33445 455665433 454444 555
Q ss_pred CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEEeccCCccCCCCcEEEEECCCccccCCCCCCcCCCcccc
Q psy4832 208 GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRVLSLESVADPSINWEVAVGSGERCIPGDETNCGDNGPAL 287 (770)
Q Consensus 208 G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i~~~~~~~~~~g~~~~vaG~g~~~~p~~~~~~g~~g~~~ 287 (770)
+... .+.+ .+.-.+-...++.|.++.+.++-...+.|+-++.-. .++...-. .||
T Consensus 142 ~a~v-~~~l-~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~-----~~~~v~el------------nhg------ 196 (487)
T KOG0310|consen 142 TAYV-QAEL-SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS-----LTSRVVEL------------NHG------ 196 (487)
T ss_pred CcEE-EEEe-cCCcceeEeeccccCCCeEEEecCCCceEEEEEecc-----CCceeEEe------------cCC------
Confidence 5443 3222 233456778889999999999999999998885311 11111111 111
Q ss_pred cccccCc-ceEEEccCCcEEEEeCCC-eEEECCC
Q psy4832 288 AAKLSHP-KGLAIKADKTMFIADGTN-IRVVSPE 319 (770)
Q Consensus 288 ~a~l~~P-~gIavd~~G~lYvaD~~~-Ir~id~~ 319 (770)
.| ..|.+-+.|.++++.++| +++.|..
T Consensus 197 -----~pVe~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 197 -----CPVESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred -----CceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 12 345556788888888888 7777743
No 245
>KOG1408|consensus
Probab=21.79 E-value=6.5e+02 Score=29.88 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=14.2
Q ss_pred EEeeCCCCceEEEEEeccccc
Q psy4832 54 KTYEADPNLTHVFTWNKRNVY 74 (770)
Q Consensus 54 ~~~~~~p~~~~~~~W~~~d~y 74 (770)
.|+..-=|---.|+||=+|.=
T Consensus 337 ~klscVYndhSlYvWDvrD~~ 357 (1080)
T KOG1408|consen 337 DKLSCVYNDHSLYVWDVRDVN 357 (1080)
T ss_pred ceEEEEEcCceEEEEeccccc
Confidence 345555566677899988864
No 246
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=21.24 E-value=2.3e+02 Score=28.64 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=30.0
Q ss_pred CccEEEEEEE-EceeE-EEEEeeCCCCceEEEEEecccccCceee
Q psy4832 37 SLVKVHVRVE-IEGSV-HTKTYEADPNLTHVFTWNKRNVYKQKVY 79 (770)
Q Consensus 37 ~l~~v~~~~~-v~g~~-~~~~~~~~p~~~~~~~W~~~d~y~~~v~ 79 (770)
.-..|.|.|. =.|.+ .+..+.+.+.-.+.|.||++|.-|.++-
T Consensus 120 ~a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~ 164 (221)
T PRK12634 120 SAGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMA 164 (221)
T ss_pred cCCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCC
Confidence 3466777774 35554 3444556666689999999999988864
No 247
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=20.89 E-value=1.5e+02 Score=20.48 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=15.5
Q ss_pred eEEEeCCCCeEEEEe-CCEEEEEcC
Q psy4832 356 GLALSPLDDSLHFID-DRVIFKLTN 379 (770)
Q Consensus 356 gla~d~~~g~lyv~D-~~~I~~i~~ 379 (770)
.+++. ++.||+.+ ++.|+.++.
T Consensus 16 ~~~v~--~g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 16 SPAVA--GGRVYVGTGDGNLYALDA 38 (40)
T ss_dssp --EEC--TSEEEEE-TTSEEEEEET
T ss_pred CCEEE--CCEEEEEcCCCEEEEEeC
Confidence 34676 88999998 588888875
No 248
>KOG3567|consensus
Probab=20.83 E-value=84 Score=34.90 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=50.4
Q ss_pred cCCeeEEEEcCCCCEEEEeCCCCceeeEEEEcC-CCcEEEeecCccCCCCCcCCCCCcccccCccCcccccceecCCeeE
Q psy4832 427 LGSLTALAFSPTGDLYIADIDARKVNALRVIDS-TGRMFDFAGRWQSDKKNCNTTNCAEFEKNSKETLLTSTARFTSISA 505 (770)
Q Consensus 427 l~~P~giavd~~G~lyVaD~~~~ri~~i~~i~~-~G~i~~~aG~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~P~g 505 (770)
|..|.|..+|.+|+.++++-.-|. +++..+ .+.+....|.+... ......|..|.+
T Consensus 167 lqvhyg~t~df~~~~d~TgV~mH~---t~kp~pkla~~~L~l~~~tvp--------------------~~~~~~f~~~ts 223 (501)
T KOG3567|consen 167 LQVHYGLTIDFDGNYDVTGVGMHQ---TEKPQPKLAKTMLLLGDGTVP--------------------GEGTKHFETPTS 223 (501)
T ss_pred EEeccccccCCCCCcccccceeee---eccCCchhhceEEeecCCccC--------------------CCCccccCCCce
Confidence 677999999999999999998774 455444 44444444432111 123455788999
Q ss_pred EEEcCCCcEEEEcCCC
Q psy4832 506 LSVSPDGVVNVADQGS 521 (770)
Q Consensus 506 iav~~dG~lyvaD~~~ 521 (770)
++|..+|.++++|...
T Consensus 224 c~v~~n~~ihvfa~r~ 239 (501)
T KOG3567|consen 224 CAVEENGPIHVFAYRC 239 (501)
T ss_pred EEEecCcceeeEEeee
Confidence 9999999999998644
No 249
>KOG2280|consensus
Probab=20.80 E-value=1.5e+03 Score=27.23 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=38.3
Q ss_pred ccCcceEEEccCC--cEEEEeCCCeEEECCCCcEEEeecCCCCCCCcCCCccCCCcccccccccCcceEEEeCCCCeEEE
Q psy4832 291 LSHPKGLAIKADK--TMFIADGTNIRVVSPEGIIHTLIGHHKHHNIWSPFNCHRSFPASTAQLQWPTGLALSPLDDSLHF 368 (770)
Q Consensus 291 l~~P~gIavd~~G--~lYvaD~~~Ir~id~~G~i~t~~g~~~~~~~~~p~~~~~~~~~~~~~l~~P~gla~d~~~g~lyv 368 (770)
+..|-.|+.++.. .+|.+ ...|+.++..|++. |.-. | .-..+-++-++. +..|.+
T Consensus 43 ~gGpIAV~r~p~~~~~~~~a-~~~I~If~~sG~lL---~~~~----w--------------~~~~lI~mgWs~-~eeLI~ 99 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLYSA-RPYIRIFNISGQLL---GRIL----W--------------KHGELIGMGWSD-DEELIC 99 (829)
T ss_pred cCCceEEEeccccccccccc-ceeEEEEeccccch---HHHH----h--------------cCCCeeeecccC-CceEEE
Confidence 4457777777633 25521 12288888888652 1110 0 000355677775 555544
Q ss_pred E-eCCEEEEEcCCCcEE
Q psy4832 369 I-DDRVIFKLTNDLKVK 384 (770)
Q Consensus 369 ~-D~~~I~~i~~~G~v~ 384 (770)
. .++.+++++.-|...
T Consensus 100 v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 100 VQKDGTVHVYGLLGEFI 116 (829)
T ss_pred EeccceEEEeecchhhh
Confidence 4 467777777655533
No 250
>KOG0275|consensus
Probab=20.09 E-value=1.1e+03 Score=25.18 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCeEEECCCccEEecccCCCeEEEEeccCccCCccCCCC-CcccccccccCceEEEEcCCC--CEEEEeC-ceEEEEcCC
Q psy4832 132 EGILQKGDGSSLHLKHEFPRTVSVVMGTGLQRPLVCKDC-DGVARDARLLTPVALTSGPDG--SLYVGDF-NLVRRLTPE 207 (770)
Q Consensus 132 ~gil~~~dG~~~~~~~~~~~~i~~v~g~G~~~~~~~~~~-~g~~~~~~l~~P~~la~~~dG--~lyv~d~-~~I~~i~~~ 207 (770)
+-..+..||..+..+. ..+.|.+..+.-+. |... ..++.+... ..+..-|.. .+.|+.. |.|..++..
T Consensus 352 n~a~ft~dG~~iisaS-sDgtvkvW~~Ktte----C~~Tfk~~~~d~~v---nsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 352 NEATFTDDGHHIISAS-SDGTVKVWHGKTTE----CLSTFKPLGTDYPV---NSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred cceEEcCCCCeEEEec-CCccEEEecCcchh----hhhhccCCCCcccc---eeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 3455667887666555 77777777664332 2100 001111111 122222321 2444443 566666777
Q ss_pred CcEEEEeccCcccccceeEEEEeCCCCcEEEEeCCCcEEEEE
Q psy4832 208 GNVFTVLQLSATQVSYQYYLALSPADGHLYISDAEKHQILRV 249 (770)
Q Consensus 208 G~v~~~~~~~~~~~~~p~~lav~p~~g~lyvsd~~~~~I~~i 249 (770)
|.+...+..+...-..-..-+++|.+..+|... ....++-+
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF 464 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCF 464 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEE
Confidence 777766654322222223456777555666443 33455544
No 251
>KOG1538|consensus
Probab=20.06 E-value=1.5e+03 Score=26.84 Aligned_cols=131 Identities=13% Similarity=0.152 Sum_probs=72.5
Q ss_pred CcceEEEeCCCCe-EEEEeCCEEEEEcCC-Cc-EEEEecCCCCCCCCCCCCccccccccccccccccCCcccccccccCC
Q psy4832 353 WPTGLALSPLDDS-LHFIDDRVIFKLTND-LK-VKIVAGIPLHCRTGDKDKRDFKDKQSKTKKSTVQDDSVRASNMDLGS 429 (770)
Q Consensus 353 ~P~gla~d~~~g~-lyv~D~~~I~~i~~~-G~-v~~vaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 429 (770)
....||+-| ||. |.++..++++.+|++ |. +.++-|.. ..
T Consensus 14 ci~d~afkP-DGsqL~lAAg~rlliyD~ndG~llqtLKgHK-------------------------------------Dt 55 (1081)
T KOG1538|consen 14 CINDIAFKP-DGTQLILAAGSRLLVYDTSDGTLLQPLKGHK-------------------------------------DT 55 (1081)
T ss_pred chheeEECC-CCceEEEecCCEEEEEeCCCccccccccccc-------------------------------------ce
Confidence 467899999 775 788888999999954 43 33444321 22
Q ss_pred eeEEEEcCCCCEEEEeCCCCceeeEEEEcCCCcEEEeecCccCCCCCcCCCC--------Ccccc---cCccCcccccce
Q psy4832 430 LTALAFSPTGDLYIADIDARKVNALRVIDSTGRMFDFAGRWQSDKKNCNTTN--------CAEFE---KNSKETLLTSTA 498 (770)
Q Consensus 430 P~giavd~~G~lyVaD~~~~ri~~i~~i~~~G~i~~~aG~~~~~~~~~~~~~--------~~~~~---~~~~d~~~~~~~ 498 (770)
...+|.+.+|..|.+-...+-| .|+.-.-.|.+..-.+.. -.|...| |...+ .+..+.......
T Consensus 56 VycVAys~dGkrFASG~aDK~V-I~W~~klEG~LkYSH~D~----IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~k 130 (1081)
T KOG1538|consen 56 VYCVAYAKDGKRFASGSADKSV-IIWTSKLEGILKYSHNDA----IQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHK 130 (1081)
T ss_pred EEEEEEccCCceeccCCCceeE-EEecccccceeeeccCCe----eeEeecCchHHHhhhcchhhccccChhhhhHHhhh
Confidence 5778999999998876655421 222111245443322222 1232211 32110 000011111111
Q ss_pred ecCCeeEEEEcCCCcEEEEcCCCceEEe
Q psy4832 499 RFTSISALSVSPDGVVNVADQGSLHILA 526 (770)
Q Consensus 499 ~l~~P~giav~~dG~lyvaD~~~~~I~~ 526 (770)
.-.+..+.+...||.+++...+|+.|..
T Consensus 131 ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 131 SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 2234667888889999998888887743
No 252
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=20.04 E-value=1.3e+03 Score=26.05 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=12.7
Q ss_pred EEcCCCCEEEEEEeCCCCceE
Q psy4832 729 VFNQYGETVREIMRSPYGHIV 749 (770)
Q Consensus 729 ~~d~~G~~v~~~~yd~~G~~~ 749 (770)
.++++|+++.+..||+-|+++
T Consensus 131 ~y~~~g~~~~~~y~~~~G~~v 151 (438)
T TIGR02919 131 VYDANGKAILKRYFDKDGKEV 151 (438)
T ss_pred EECCCCcEEEEEEECCCCCEE
Confidence 455666666666666666644
Done!